Methods for inhibition of membrane-fusion-associated events, including Hepatitis B virus transmission

ABSTRACT

The present invention relates to peptides which exhibit potent anti-viral activity. In particular, the invention relates to methods of using such peptides as inhibitory of hepatitis B virus (“HepB”) transmission to uninfected cells. The peptides used in the methods of the invention are homologs of the DP-178 and DP-107 peptides, peptides corresponding to amino acid residues 638 to 673, and to amino acid residues 558 to 595, respectively, of the HIV-1 LAI  transmembrane protein (TM) gp41.

This is a division, of application Ser. No. 08/470,896 filed Jun. 6, 1995 now U.S. Pat. No. 6,479,055, which is a continuation-in-part of Ser. No. 08/360,107, filed Dec. 20, 1994 now U.S. Pat. No. 6,017,536, which is a continuation-in-part of Ser. No. 08/255,208, filed Jun. 7, 1994 now U.S. Pat. No. 6,440,656, which is a continuation-in-part of Ser. No. 08/073,028, filed Jun. 7, 1993 now U.S. Pat. No. 5,464,933, each which is incorporated by reference in its entirety.

This invention was made with Government support under Grant No. AI-30411-02 awarded by the National Institutes of Health. The Government has certain rights in the invention.

1. INTRODUCTION

The present invention relates, first, to DP178 (SEQ ID NO:1), a peptide corresponding to amino acids 638 to 673 of the HIV-1_(LAI) transmembrane protein (TM) gp41, and portions or analogs of DP178 (SEQ ID NO:1), which exhibit anti-membrane fusion capability, antiviral activity, such as the ability to inhibit HIV transmission to uninfected CD-4⁺ cells, or an ability to modulate intracellular processes involving coiled-coil peptide structures. Further, the invention relates to the use of DP178 (SEQ ID NO:1) and DP178 portions and/or analogs as antifusogenic or antiviral compounds or as inhibitors of intracellular events involving coiled-coil peptide structures. The present invention also relates to peptides analogous to DP107, a peptide corresponding to amino acids 558 to 595 of the HIV-1_(LAI) transmembrane protein (TM) gp41, having amino acid sequences present in other viruses, such as enveloped viruses, and/or other organisms, and further relates to the uses of such peptides. These peptides exhibit anti-membrane fusion capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil peptide structures. The present invention additionally relates to methods for identifying compounds that disrupt the interaction between DP178 and DP107, and/or between DP107-like and DP178-like peptides. Further, the invention relates to the use of the peptides of the invention as diagnostic agents. For example, a DP178 peptide may be used as an HIV subtype-specific diagnostic. The invention is demonstrated, first, by way of an Example wherein DP178 (SEQ ID:1), and a peptide whose sequence is homologous to DP178 are each shown to be potent, non-cytotoxic inhibitors of HIV-1 transfer to uninfected CD-4⁺ cells. The invention is further demonstrated by Examples wherein peptides having structural and/or amino acid motif similarity to DP107 and DP178 are identified in a variety of viral and nonviral organisms, and in examples wherein a number of such identified peptides derived from several different viral systems are demonstrated to exhibit antiviral activity.

2. BACKGROUND OF THE INVENTION 2.1 Membrane Fusion Events

Membrane fusion is a ubiquitous cell biological process (for a review, see White, J. M., 1992, Science 258:917-924). Fusion events which mediate cellular housekeeping functions, such as endocytosis, constitutive secretion, and recycling of membrane components, occur continuously in all eukaryotic cells.

Additional fusion events occur in specialized cells. Intracellularly, for example, fusion events are involved in such processes as occur in regulated exocytosis of hormones, enzymes and neurotransmitters. Intercellularly, such fusion events feature prominently in, for example, sperm-egg fusion and myoblast fusion.

Fusion events are also associated with disease states. For example, fusion events are involved in the formation of giant cells during inflammatory reactions, the entry of all enveloped viruses into cells, and, in the case of human immunodeficiency virus (HIV), for example, are responsible for the virally induced cell-cell fusion which leads to cell death.

2.2. The Human Immunodeficiency Virus

The human immunodeficiency virus (HIV) has been implicated as the primary cause of the slowly degenerative immune system disease termed acquired immune deficiency syndrome (AIDS) (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo, R. et al., 1984, Science 224:500-503). There are at least two distinct types of HIV: HIV-1 (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo R. et al., 1984, Science 224:500-503) and HIV-2 (Clavel, F. et al., 1986, Science 233:343-346; Guyader, M. et al., 1987, Nature 326:662-669). Further, a large amount of genetic heterogeneity exists within populations of each of these types. Infection of human CD-4⁺ T-lymphocytes with an HIV virus leads to depletion of the cell type and eventually to opportunistic infections, neurological dysfunctions, neoplastic growth, and ultimately death.

HIV is a member of the lentivirus family of retroviruses (Teich, N. et al., 1984, RNA Tumor Viruses, Weiss, R. et al., eds., CSH-Press, pp. 949-956). Retroviruses are small enveloped viruses that contain a diploid, single-stranded RNA genome, and replicate via a DNA intermediate produced by a virally-encoded reverse transcriptase, an RNA-dependent DNA polymerase (Varmus, H., 1988, Science 240:1427-1439). Other retroviruses include, for example, oncogenic viruses such as human T-cell leukemia viruses (HTLV-I, -II, -III), and feline leukemia virus.

The HIV viral particle consists of a viral core, composed of capsid proteins, that contains the viral RNA genome and those enzymes required for early replicative events. Myristylated Gag protein forms an outer viral shell around the viral core, which is, in turn, surrounded by a lipid membrane enveloped derived from the infected cell membrane. The HIV enveloped surface glycoproteins are synthesized as a single 160 Kd precursor protein which is cleaved by a cellular protease during viral budding into two glycoproteins, gp41 and gp120. gp41 is a transmembrane protein and gp120 is an extracellular protein which remains non-covalently associated with gp41, possibly in a trimeric or multimeric form (Hammarskjold, M. and Rekosh, D., 1989, Biochem. Biophys. Acta 989:269-280).

HIV is targeted to CD-4⁺ cells because the CD-4 cell surface protein acts as the cellular receptor for the HIV-1 virus (Dalgleish, A. et al., 1984, Nature 312:763-767; Klatzmann et al., 1984, Nature 312:767-768; Maddon et al., 1986, Cell 47:333-348). Viral entry into cells is dependent upon gp120 binding the cellular CD-4⁺ receptor molecules (McDougal, J. S. et al., 1986, Science 231:382-385; Maddon, P. J. et al., 1986, Cell 47:333-348) and thus explains HIV's tropism for CD-4⁺ cells, while gp41 anchors the enveloped glycoprotein complex in the viral membrane.

2.3. HIV Treatment

HIV infection is pandemic and HIV associated diseases represent a major world health problem. Although considerable effort is being put into the successful design of effective therapeutics, currently no curative anti-retroviral drugs against AIDS exist. In attempts to develop such drugs, several stages of the HIV life cycle have been considered as targets for therapeutic intervention (Mitsuya, H. et al., 1991, FASEB J. 5:2369-2381). For example, virally encoded reverse transcriptase has been one focus of drug development. A number of reverse-transcriptase-targeted drugs, including 2′,3′-dideoxynucleoside analogs such as AZT, ddI, ddC, and d4T have been developed which have been shown to been active against HIV (Mitsuya, H. et al., 1991, Science 249:1533-1544). While beneficial, these nucleoside analogs are not curative, probably due to the rapid appearance of drug resistant HIV mutants (Lander, B. et al., 1989, Science 243:1731-1734). In addition, the drugs often exhibit toxic side effects such as bone marrow suppression, vomiting, and liver function abnormalities.

Attempts are also being made to develop drugs which can inhibit viral entry into the cell, the earliest stage of HIV infection. Here, the focus has thus far been on CD4, the cell surface receptor for HIV. Recombinant soluble CD4, for example, has been shown to inhibit infection of CD-4⁺ T-cells by some HIV-1 strains (Smith, D. H. et al., 1987, Science 238:1704-1707). Certain primary HIV-1 isolates, however, are relatively less sensitive to inhibition by recombinant CD-4 (Daar, E. et al., 1990, Proc. Natl. Acad. Sci. USA 87:6574-6579). In addition, recombinant soluble CD-4 clinical trials have produced inconclusive results (Schooley, R. et al., 1990, Ann. Int. Med. 112:247-253; Kahn, J. O. et al., 1990, Ann. Int. Med. 112:254-261; Yarchoan, R. et al., 1989, Proc. Vth Int. Conf. on AIDS, p. 564, MCP 137).

The late stages of HIV replication, which involve crucial virus-specific secondary processing of certain viral proteins, have also been suggested as possible anti-HIV drug targets. Late stage processing is dependent on the activity of a viral protease, and drugs are being developed which inhibit this protease (Erickson, J., 1990, Science 249:527-533). The clinical outcome of these candidate drugs is still in question.

Attention is also being given to the development of vaccines for the treatment of HIV infection. The HIV-1 enveloped proteins (gp160, gp120, gp41) have been shown to be the major antigens for anti-HIV antibodies present in AIDS patients (Barin, et al., 1985, Science 228:1094-1096). Thus far, therefore, these proteins seem to be the most promising candidates to act as antigens for anti-HIV vaccine development. To this end, several groups have begun to use various portions of gp160, gp120, and/or gp41 as immunogenic targets for the host immune system. See for example, Ivanoff, L. et al., U.S. Pat. No. 5,141,867; Saith, G. et al., WO 92/22,654; Shafferman, A., WO 91/09,872; Formoso, C. et al., WO 90/07,119. Clinical results concerning these candidate vaccines, however, still remain far in the future.

Thus, although a great deal of effort is being directed to the design and testing of anti-retroviral drugs, a truly effective, non-toxic treatment is still needed.

3. SUMMARY OF THE INVENTION

The present invention relates, first, to DP178 (SEQ ID:1), a 36-amino acid synthetic peptide corresponding to amino acids 638 to 673 of the transmembrane protein (TM) gp41 from the HIV-1 isolate LAI (HIV-1_(LAI)), which exhibits potent anti-HIV-1 activity. As evidenced by the Example presented below, in Section 6, the DP178 (SEQ ID:1) antiviral activity is so high that, on a weight basis, no other known anti-HIV agent is effective at concentrations as low as those at which DP178 (SEQ ID:1) exhibits its inhibitory effects.

The invention further relates to those portions and analogs of DP178 which also show such antiviral activity, and/or show anti-membrane fusion capability, or an ability to modulate intracellular processes involving coiled-coil peptide structures. The term “DP178 analog” refers to a peptide which contains an amino acid sequence corresponding to the DP178 peptide sequence present within the gp41 protein of HIV-1_(LIA), but found in viruses and/or organisms other than HIV-1_(LAI). Such DP178 analog peptides may, therefore, correspond to DP178-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1_(LAI), as well as non-enveloped viruses. Further, such analogous DP178 peptides may also correspond to DP178-like amino acid sequences present in nonviral organisms.

The invention further relates to DP107 (SEQ ID NO:89) peptide analogs. DP107 is a peptide corresponding to amino acids 558-595 of the HIV-1LAI transmembrane protein (TM) gp41. The term “DP107 analog” as used herein refers to a peptide which contains an amino acid sequence corresponding to the DP107 sequence present within the gp41 protein of HIV-1_(LAI), but found in viruses and organisms other than HIV-1_(LAI). Such DP107 analog peptides may, therefore, correspond to DP107-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1_(LAI), as well as non-enveloped viruses. Further, such DP107 analog peptides may also correspond to DP107-like amino acid sequences present in nonviral organisms.

Further, the peptides of the invention include DP107 analog and DP178 analog peptides having amino acid sequences recognized or identified by the 107×178×4, ALLMOTI5 and/or PLZIP search motifs described herein.

The peptides of the invention may, for example, exhibit antifusogenic activity, antiviral activity, and/or may have the ability to modulate intracellular processes which involve coiled-coil peptide structures. With respect to the antiviral activity of the peptides of the invention, such an antiviral activity includes, but is not limited to the inhibition of HIV transmission to uninfected-CD-4⁺ cells. Additionally, the antifusogenic capability, antiviral activity or intracellular modulatory activity of the peptides of the invention merely requires the presence of the peptides of the invention, and, specifically, does not require the stimulation of a host immune response directed against such peptides.

The peptides of the invention may be used, for example, as inhibitors of membrane fusion-asociated events, such as, for example, the inhibition of human and non-human retroviral, especially HIV, transmission to uninfected cells. It is further contemplated that the peptides of the invention may be used as modulators of intracellular events involving coiled-coil peptide structures.

The peptides of the invention may, alternatively, be used to identify compounds which may themselves exhibit antifusogenic, antiviral, or intracellular modulatory activity. Additional uses include, for example, the use of the peptides of the invention as organism or viral type and/or subtype-specific diagnostic tools.

The terms “antifusogenic” and “anti-membrane fusion”, as used herein, refer to an agent's ability to inhibit or reduce the level of membrane fusion events between two or more moieties relative to the level of membrane fusion which occurs between said moieties in the absence of the peptide. The moieties may be, for example, cell membranes or viral structures, such as viral envelopes or pili. The term “antiviral”, as used herein, refers to the compound's ability to inhibit viral infection of cells, via, for example, cell-cell fusion or free virus infection. Such infection may involve membrane fusion, as occurs in the case of enveloped viruses, or some other fusion event involving a viral structure and a cellular structure (e.g., such as the fusion of a viral pilus and bacterial membrane during bacterial conjugation).

It is also contemplated that the peptides of the invention may exhibit the ability to modulate intracellular events involving coiled-coil peptide structures. “Modulate”, as used herein, refers to a stimulatory or inhibitory effect on the intracellular process of interest relative to the level or activity of such a process in the absence of a peptide of the invention.

Embodiments of the invention are demonstrated below wherein an extremely low concentration of DP178 (SEQ ID:1), and very low concentrations of a DP178 homolog (SEQ ID:3) are shown to be potent inhibitors of HIV-1 mediated CD-4⁺ cell-cell fusion (i.e., syncytial formation) and infection of CD-4⁺ cells by cell-free virus. Further, it is shown that DP178 (SEQ ID:1) is not toxic to cells, even at concentrations 3 logs higher than the inhibitory DP-178 (SEQ ID:1) concentration.

The present invention is based, in part, on the surprising discovery that the DP107 and DP178 domains of the HIV gp41 protein non-covalently complex with each other, and that their interaction is required for the normal infectivity of the virus. This discovery is described in the Example presented, below, in Section 8. The invention, therefore, further relates to methods for identifying antifusogenic, including antiviral, compounds that disrupt the interaction between DP107 and DP178, and/or between DP107-like and DP178-like peptides.

Additional embodiments of the invention (specifically, the Examples presents in Sections 9-16 and 19-25, below) are demonstrated, below, wherein peptides, from a variety of viral and nonviral sources, having structural and/or amino acid motif similarity to DP107 and DP178 are identified, and search motifs for their identification are described. Further, Examples (in Sections 17, 18, 25-29) are presented wherein a number of the peptides of the invention are demonstrated exhibit substantial antiviral activity or activity predictive of antiviral activity.

3.1. Definitions

Peptides are defined herein as organic compounds comprising two or more amino acids covalently joined by peptide bonds. Peptides may be referred to with respect to the number of constituent amino acids, i.e., a dipeptide contains two amino acid residues, a tripeptide contains three, etc. Peptides containing ten or fewer amino acids may be referred to as oligopeptides, while those with more than ten amino acid residues are polypeptides. Such peptides may also include any of the modifications and additional amino and carboxy groups as are described herein.

Peptide sequences defined herein are represented by one-letter symbols for amino acid residues as follows:

A (alanine)

R (arginine)

N (asparagine)

D (aspartic acid)

C (cysteine)

Q (glutamine)

E (glutamic acid)

G (glycine)

H (histidine)

I (isoleucine)

L (leucine)

K (lysine)

M (methionine)

F (phenylalanine)

P (proline)

S (serine)

T (threonine)

W (tryptophan)

Y (tyrosine)

V (valine)

4. BRIEF DESCRIPTION OF THE FIGURES

FIG. 1. Amino acid sequence of DP178 (SEQ ID:1) derived from HIV_(LAI); DP178 homologs derived from HIV-1_(SF2) (DP-185; SEQ ID:3), HIV-1_(RF) (SEQ ID:4), and HIV-1_(MN) (SEQ ID:5); DP178 homologs derived from amino acid sequences of two prototypic HIV-2 isolates, namely, HIV-2_(rod) (SEQ ID:6) and HIV-2_(NHZ) (SEQ ID:7); control peptides: DP-180 (SEQ ID:2), a peptide incorporating the amino acid residues of DP178 in a scrambled sequence; DP-118 (SEQ ID:10) unrelated to DP178, which inhibits HIV-1 cell free virus infection; DP-125 (SEQ ID:8), unrelated to DP178, also inhibits HIV-1 cell free virus infection; DP-116 (SEQ ID:9), unrelated to DP178, is negative for inhibition of HIV-1 infection when tested using a cell-free virus infection assay. Throughout the figures, the one letter amino acid code is used.

FIG. 2. Inhibition of HIV-1 cell-free virus infection by synthetic peptides. IC₅₀ refers to the concentration of peptide that inhibits RT production from infected cells by 50% compared to the untreated control. Control: the level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.

FIG. 3. Inhibition of HIV-1 and HIV-2 cell-free virus infection by the synthetic peptide DP178 (SEQ ID:1). IC₅₀: concentration of peptide that inhibits RT production by 50% compared to the untreated control. Control: Level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.

FIGS. 4A-4B. Fusion Inhibition Assays. FIG. 4A: DP178 (SEQ ID:1) inhibition of HIV-1 prototypic isolate-mediated syncytial formation; data represents the number of virus-induced syncytial per cell. FIG. 4B: DP-180 (SEQ ID:2) represents a scrambled control peptide; DP-185 (SEQ ID:3) represents a DP178 homolog derived from HIV-1_(SP2) isolate; Control, refers to the number of syncytial produced in the absence of peptide.

FIG. 5. Fusion inhibition assay: HIV-1 vs. HIV-2. Data represents the number of virus-induced syncytial per well. ND: not done.

FIG. 6. Cytotoxicity study of DP178 (SEQ ID:1) and DP-116 (SEQ ID:9) on CEM cells. Cell proliferation data is shown.

FIG. 7. Schematic representation of HIV-gp41 and maltose binding protein (MBP)-gp41 fusion proteins. DP107 and DP178 are synthetic peptides based on the two putative helices of gp41. The letter P in the DP107 boxes denotes an Ile to Pro mutation at amino acid number 578. Amino acid residues are numbered according to Meyers et al., “Human Retroviruses and AIDS”, 1991, Theoret. Biol. and Biophys. Group, Los Alamos Natl. Lab., Los Alamos, N. Mex. The proteins are more fully described, below, in Section 8.1.1.

FIG. 8. A point mutation alters the conformation and anti-HIV activity of M41.

FIG. 9. Abrogation of DP178 anti-HIV activity. Cell fusion assays were carried out in the presence of 10 nM DP178 and various concentrations of M41Δ178 or M41PΔ178.

FIG. 10. Binding of DP178 to leucine zipper of gp41 analyzed by FAb-D ELISA.

FIGS. 11A-B. Models for a structural transition in the HIV-1 TM protein. Two models are proposed which indicate a structural transition from a native oligomer to a fusogeric state following a trigger event (possibly gp120 binding to CD4). Common features of both models include (1) the native state is held together by noncovalent protein-protein interactions to form the heterodimer of gp120/41 and other interactions, principally though gp41 interactive sites, to form homo-oligomers on the virus surface of the gp120/41 complexes; (2) shielding of the hydrophobic fusogenic peptide at the N-terminus (F) in the native state; and (3) the leucine zipper domain (DP107) exists as a homo-oligomer coiled coil only in the fusogenic state. The major differences in the two models include the structural state (native or fusogenic) in which the DP107 and DP178 domains are complexed to each other. In the first model (FIG. 11A) this interaction occurs in the native state and in the second (FIG. 11B), it occurs during the fusogenic state. When triggered, the fusion complex in the model depicted in (A) is generated through formation of coiled-coil interactions in homologous DP17 domains resulting in an extended α-helix. This conformational change positions the fusion peptide for interaction with the cell membrane. In the second model (FIG. 11B), the fusogenic complex is stabilized by the association of the DP178 domain with the DP107 coiled-coil.

FIG. 12. Motif design using heptad repeat positioning of amino acids of known coiled-coils [GCN4:(SEQ ID NO:84); C-FOS:(SEQ ID NO:85); C-JUN:(SEQ ID NO:86); C-MYC:(SEQ ID NO:87); FLU LOOP 36:(SEQ ID NO:88)].

FIG. 13. Motif design using proposed heptad repeat positioning of amino acids of DP107 and DP178.

FIG. 14. Hybrid motif design crossing GCN4 and DP107.

FIG. 15. Hybrid motif design crossing GCN4 and DP178.

FIG. 16. Hybrid motif design 107×178×4, crossing DP107 (SEQ ID NO:89) and DP178 (SEQ ID NO:1). This motif was found to be the most consistent at identifying relevant DP107-like and DP178-like peptide regions.

FIG. 17. Hybrid motif design crossing GCN4, DP107, and DP178.

FIG. 18. Hybrid motif design ALLMOTI5 crossing GCN4, DP107, DP178, c-Fos c-Jun, c-Myc, and Flu Loop 36.

FIG. 19. PLZIP motifs designed to identify N-terminal proline-leucine zipper motifs.

FIG. 20. Search results for HIV-1 (BRU isolate) enveloped protein gp41(SEQ ID NO:90). Sequence search motif designations: Spades (

): 107×178×4; Hearts (♥) ALLMOTI5; Clubs (

): PLZIP; Diamonds (♦): transmembrane region (the putative transmembrane domains were identified using a PC/Gene program designed to search for such peptide regions). Asterisk (*): Lupas method. The amino acid sequences identified by each motif are bracketed by the respective characters. Representative sequences chosen based on 107×178×4 searches are underlined and in bold. DP107 and DP178 sequences are marked, and additionally double-underlined and italicized.

FIG. 21. Search results for human respiratory syncytial virus (RSV) strain A2 fusion glycoprotein F1 (SEQ ID NO:91). Sequence search motif designations are as in FIG. 20.

FIG. 22. Search results for simian immunodeficiency virus (SIV) enveloped protein gp41 (AGM3 isolate)(SEQ ID NO:92). Sequence search motif designations are as in FIG. 20.

FIG. 23. Search results for canine distemper virus (strain Onderstepoort) fusion glycoprotein 1 (SEQ ID NO:93). Sequence search motif designations are as in FIG. 20.

FIG. 24. Search results for newcastle disease virus (strain Australia-Victoria/32) fusion glycoprotein F1 (SEQ ID NO:94). Sequence search motif designations are as in FIG. 20.

FIG. 25. Search results for human parainfluenza 3 virus (strain NIH 47885) fusion glycoprotein F1 (SEQ ID NO:95). Sequence search motif designations are as in FIG. 20.

FIG. 26. Search results for influenza A virus (strain A/AICHI/2/68) hemagglutinin precursor HA2 (SEQ ID NO:96). Sequence search designations are as in FIG. 20.

FIGS. 27A-F: Respiratory Syncytial Virus (RSV) peptide (SEQ ID NO:97) antiviral and circular dichroism data. FIGS. 27A-C: Peptides derived from the F2 DP178/DP107-like region: [T-22: (SEQ ID NO:121); T-68: (SEQ ID NO:122); T-334: (SEQ ID NO:123); T-371: (SEQ ID NO:124); T-372: (SEQ ID NO:125); T-373: (SEQ ID NO:126); T-374: (SEQ ID NO:127); T-375:(SEQ ID NO:128); T-575:(SEQ ID NO:129)]. Antiviral and CD data. FIGS. 27D-F: Peptides derived from the F1 DP107-like region: [F1-107: (SEQ ID NO:98); T-12: (SEQ ID NO:130); T-13: (SEQ ID NO:131); T-15: (SEQ ID NO:132); T-19: (SEQ ID NO:133); T-28: (SEQ ID NO:134); T-30: (SEQ ID NO:135); T-66: (SEQ ID NO:136); T-576: (SEQ ID NO:137)]. Peptide and CD data.

Antiviral activity (AV) is represented by the following qualitative symbols:

“−”, negative antiviral activity;

“+/−”, antiviral activity at greater than 100 μg/ml;

“+”, antiviral activity at between 50-100 μg/ml;

“++”, antiviral activity at between 20-50 μg/ml;

“+++”, antiviral activity at between 1-20 μg/ml;

“++++”, antiviral activity at <1 μg/ml.

CD data, referring to the level of helicity is represented by the following qualitative symbol:

“−”, no helicity;

“+”, 25-50% helicity;

“++”, 50-75% helicity;

“+++”, 75-100% helicity.

IC₅₀ refers to the concentration of peptide necessary to produce only 50% of the number of syncytial relative to infected control cultures containing no peptide. IC₅₀ values were obtained using purified peptides only.

FIGS. 28A-C: Respiratory Syncytial Virus (RSV) DP178-like region (F1) peptide antiviral and CD data [F1-178: (SEQ ID NO:99); T-71: (SEQ ID NO:138); T-384: (SEQ ID NO:139); T-616: (SEQ ID NO:140); T-617: (SEQ ID NO:141); T-662: (SEQ ID NO:142); T-665: (SEQ ID NO:143); T-671: (SEQ ID NO:144); T-730: (SEQ ID NO:145)]. Antiviral symbols, CD symbols, and IC₅₀ are as in FIGS. 27A-F. IC₅₀ values were obtained using purified peptides only.

FIGS. 29A-E: Peptides derived from the HPIV3 F1 DP107-like region. Peptide antiviral and CD data [HPF1 107: (SEQ ID NO:100); T-42: (SEQ ID NO:146); T-39: (SEQ ID NO:147); T-40: (SEQ ID NO:148); T-45: (SEQ ID NO:149); T-46: (SEQ ID NO:150); T-582: (SEQ ID NO:151)]. Antiviral symbols, CD symbols, and IC₅₀ are as in FIGS. 27A-F. Purified peptides were used to obtain IC₅₀ values, except where the values are marked by an asterisk (*); in such cases the IC₅₀ values were obtained using a crude peptide preparation.

FIGS. 30A-C: Peptides derived from the HPIV3 F1 DP178-like region. Peptide antiviral and CD data [HPF3 178: (SEQ ID NO:101); T-269: (SEQ ID NO:152); T-626: (SEQ ID NO:153); T-383: (SEQ ID NO:154); T-577: (SEQ ID NO:155); T-578: (SEQ ID NO:156); T-579: (SEQ ID NO:157)]. Antiviral symbols, CD symbols, and IC₅₀ are as in FIGS. 27A-F. Purified peptides were used to obtain IC₅₀ values, except where the values are marked by an asterisk (*); in such cases the IC₅₀ values were obtained using a crude peptide preparation.

FIG. 31. Motif search results for simian immunodeficiency virus (SIV) isolate MM251, enveloped polyprotein gp41(SEQ ID NO:102). Sequence search designations are as in FIG. 20.

FIG. 32. Motif search results for Epstein-Barr Virus (Strain B95-8), glycoprotein gp110 precursor (designated gp115). BALF4(SEQ ID NO:103). Sequence search designations are as in FIG. 20.

FIG. 33. Motif search results for Epstein-Barr Virus (Strain B95-8), BZLF1 trans-activator protein (designated EB1 or Zebra)(SEQ ID NO:104). Sequence search designations are as in FIG. 20. Additionally, “@” refers to a well known DNA binding domain and “+” refers to a well known dimerization domain, as defined by Flemington and Speck (Flemington, E. and Speck, S. H., 1990, Proc. Natl. Acad. Sci. USA 87:9459-9463).

FIG. 34. Motif search results for measles virus (strain Edmonston), fusion glycoprotein F1 (SEQ ID NO:105). Sequence search designations are as in FIG. 20.

FIG. 35. Motif search results for Hepatitis B Virus (Subtype AYW), major surface antigen precursor S. (SEQ ID NO:106) Sequence search designations are as in FIG. 20.

FIG. 36. Motif search results for simian Mason-Pfizer monkey virus, enveloped (TM) protein gp20 (SEQ ID NO:107). Sequence search designations are as in FIG. 20.

FIG. 37. Motif search results for Pseudomonas aerginosa, fimbrial protein (SEQ ID NO:110) (Pilin) (SEQ ID NO:108). Sequence search designations are as in FIG. 20.

FIG. 38. Motif search results for Neisseria gonorrhoeae fimbrial protein (Pilin)(SEQ ID NO:109). Sequence search designations are as in FIG. 20.

FIG. 39. Motif search results for Hemophilus influenzae fimbrial protein. Sequence search designations are as in FIG. 20.

FIG. 40. Motif search results for Staphylococcus aureus, toxic shock syndrome toxin-1(SEQ ID NO:111). Sequence search designations are as in FIG. 20.

FIG. 41. Motif search results for Staphylococcus aureus enterotoxin Type E (SEQ ID NO:112). Sequence search designations are as in FIG. 20.

FIG. 42. Motif search results for Staphylococcus aureus enterotoxin A (SEQ ID NO:113). Sequence search designations are as in FIG. 20.

FIG. 43. Motif search results for Escherichia coli, heat labile enterotoxin A (SEQ ID NO:114). Sequence search designations are as in FIG. 20.

FIG. 44. Motif search results for human c-fos proto-oncoprotein (SEQ ID NO:115). Sequence search designations are as in FIG. 20.

FIG. 45. Motif search results for human lupus KU autoantigen protein P70 (SEQ ID NO:117). Sequence search designations are as in FIG. 20.

FIG. 46. Motif search results for human zinc finger protein 10 (SEQ ID NO:117). Sequence search designations are as in FIG. 20.

FIGS. 47A-B: Measles virus (MeV) fusion protein DP178-like region antiviral and CD data [T-252AO: (SEQ ID NO:118); T-268A0: (SEQ ID NO:119)]. Antiviral symbols, CD symbols, and IC₅₀ are as in FIGS. 27A-F.

FIGS. 48A-B: Simian immunodeficiency virus (SIV) TM (fusion) protein DP178-like region antiviral data (SEQ ID NO:120). Antiviral symbols are as in FIGS. 27A-F. “NT”, not tested.

FIGS. 49A-L: DP178-derived peptide antiviral data T50: (SEQ ID NO:159); T234: (SEQ ID NO:161); T235: (SEQ ID NO:162); T570: (SEQ ID NO:163); T381: (SEQ ID NO:164); T677: (SEQ ID NO:165); T589: (SEQ ID NO:166); T590: (SEQ ID NO:167); T591: (SEQ ID NO:168); T270: (SEQ ID NO:169); T271: (SEQ ID NO:170); T273: (SEQ ID NO:171); T608: (SEQ ID NO:172); T609: (SEQ ID NO:173); T610: (SEQ ID NO:174); T611: (SEQ ID NO:175); T612: (SEQ ID NO:176); T595: (SEQ ID NO:177); T95: (SEQ ID NO:178); T96: (SEQ ID NO:179); T97: (SEQ ID NO:180); T98: (SEQ ID NO:181); T99: (SEQ ID NO:182); T103: (SEQ ID NO:183); T212: (SEQ ID NO:184); T213: (SEQ ID NO:185); T214: (SEQ ID NO:186); T215: (SEQ ID NO:187); T216: (SEQ ID NO:188); T229: (SEQ ID NO:189); T230: (SEQ ID NO:190); T231: (SEQ ID NO:191); T379: (SEQ ID NO:192); T701: (SEQ ID NO:193); T702: (SEQ ID NO:194); T703: (SEQ ID NO:195); T704: (SEQ ID NO:196); T705: (SEQ ID NO:197); T706: (SEQ ID NO:198); T156: (SEQ ID NO:199); T90: (SEQ ID NO:200)].

The peptides listed herein were derived from the region surrounding the HIV-1 BRU isolate DP178 region (e.g., gp41 amino acid residues 615-717).

In instances where peptides contained DP178 point mutations, the mutated amino acid residues are shown with a shaded background. In instances in which the test peptide has had an amino and/or carboxy-terminal group added or removed (apart from the standard amido- and acetyl-blocking groups found on such peptides), such modifications are indicated. FIGS. 49A, 49C: The column to the immediate right of the name of the test peptide indicates the size of the test peptide and points out whether the peptide is derived from a one amino acid peptide “walk” across the DP178 region. The next column to the right indicates whether the test peptide contains a point mutation, while the column to its right indicates whether certain amino acid residues have been added to or removed from the DP178-derived amino acid sequence. FIGS. 49E, 49G: The column to the immediate right of the test peptide name indicates whether the peptide represents a DP178 truncation, the next column to the right points out whether the peptide contains a point mutation, and the column to its right indicates whether the peptide contains amino acids which have been added to or removed from the DP178 sequence itself. FIGS. 49I, 49K: The column to the immediate right of the test peptide name indicates whether the test peptide contains a point mutation, while the column to its right indicates whether amino acid residues have been added to or removed from the DP178 sequence itself. IC₅₀ is as defined in FIG. 27A D, FIGS. 27A-F, and IC₅₀ values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC₅₀ was obtained using a crude peptide preparation.

FIG. 50. FIGS. 50A-B: DP107 and DP107 gp41 region truncated peptide antiviral data (SEQ ID NO:201). IC₅₀ as defined in FIGS. 27A-F, and IC₅₀ values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC₅₀ was obtained using a crude peptide preparation.

FIGS. 51A-C: Epstein-Barr virus Strain B95-8 BLZF1 DP178/DP107 analog region peptide walks and electrophoretic mobility shift assay results. The peptides [173-219: (SEQ ID NO:202); 185-230: (SEQ ID NO:203); T-446: (SEQ ID NO:204); 197-242. (SEQ ID NO:205); T-458: (SEQ ID NO:206); 209-246: (SEQ ID NO:207)] (T-423 to T-434, FIG. 51A; T-435 to T-446, FIG. 51B: T-447 to T-449, T-451 to T-458 and T-459 to T-461. FIG. 51C) represent one amino acid residue “walks” through the EBV Zebra protein region from amino acid residue 173 to 246.

The amino acid residue within this region which corresponds to the first amino acid residue of each peptide is listed to the left of each peptide, while the amino acid residue within this region which corresponds to the last amino acid residue of each peptide is listed to the right of each peptide. The length of each test peptide is listed at the far right of each line, under the heading “Res”.

“ACT” refers to a test peptide's ability to inhibit Zebra binding to its response element. “+” refers to a visible, but incomplete, abrogation of the response element/Zebra homodimer complex; “+++” refers to a complete abrogation of the complex; and “−” represents a lack of complex disruption.

FIGS. 52A-B. Hepatitis B virus subtype AYW major surface antigen precursor S protein DP178/DP107 analog region and peptide walks. 52A depicts Domain I (SEQ ID NO:208) (S protein amino acid residues 174-219, which contains a potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain I. 52B depicts Domain II (SEQ ID NO:209) (S protein amino acid residues 233-290), which contains a second potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain II.

5. DETAILED DESCRIPTION OF THE INVENTION

Described herein are peptides which may exhibit antifusogenic activity, antiviral capability, and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. The peptides described include, first, DP178 (SEQ ID NO:1), a gp41-derived 36 amino acid peptide and fragments and analogs of DP178.

In addition, the peptides of the invention described herein include peptides which are DP107 analogs. DP107 (SEQ ID NO:99) is a 38 amino acid peptide corresponding to residues 558 to 595 of the HIV-1_(LAI) transmembrane (TM) gp41 protein. Such DP107 analogs may exhibit antifusogenic capability, antiviral activity or an ability to modulate intracellular processes involving coiled-coil structures.

Further, peptides of the invention include DP107 and DP178 are described herein having amino acid sequences recognized by the 107×178×4, ALLMOTI5, and PLZIP search motifs. Such motifs are also discussed.

Also described here are antifusogenic, antiviral, intracellular modulatory, and diagnostic uses of the peptides of the invention. Further, procedures are described for the use of the peptides of the invention for the identification of compounds exhibiting antifusogenic, antiviral or intracellular modulatory activity.

While not limited to any theory of operation, the following model is proposed to explain the potent anti-HIV activity of DP178, based, in part, on the experiments described in the Examples, infra. In the HIV protein, gp41, DP178 corresponds to a putative α-helix region-located in the C-terminal end of the gp41 ectodomain, and appears to associate with a distal site on gp41 whose interactive structure is influenced by the leucine zipper motif, a coiled-coil structure, referred to as DP107. The association of these two domains may reflect a molecular linkage or “molecular clasp” intimately involved in the fusion process. It is of interest that mutations in the C-terminal α-helix motif of gp41 (i.e., the D178 domain) tend to enhance the fusion ability of gp41, whereas mutations in the leucine zipper region (i.e., the DP107 domain) decrease or abolish the fusion ability of the viral protein. It may be that the leucine zipper motif is involved in membrane fusion while the C-terminal α-helix motif serves as a molecular safety to regulate the availability of the leucine zipper during virus-induced membrane fusion.

On the basis of the foregoing, two models are proposed of gp41-mediated membrane fusion which are schematically shown in FIGS. 11A-B. The reason for proposing two models is that the temporal nature of the interaction between the regions defined by DP107 and DP178 cannot, as yet, be pinpointed. Each model envisions two conformations for gp41—one in a “native” state as it might be found on a resting virion. The other in a “fusogenic” state to reflect conformational changes triggered following binding of gp120 to CD4 and just prior to fusion with the target cell membrane. The strong binding affinity between gp120 and CD4 may actually represent the trigger for the fusion process obviating the need for a pH change such as occurs for viruses that fuse within intracellular vesicles. The two major features of both models are: (1) the leucine zipper sequences (DP107) in each chain of oligomeric enveloped are held apart in the native state and are only allowed access to one another in the fusogenic state so as to form the extremely stable coiled-coils, and (2) association of the DP178 and DP107 sites as they exist in gp41 occur either in the native or fusogenic state. FIG. 11A depicts DP178/DP107 interaction in the native state as a molecular clasp. On the other hand, if one assumes that the most stable form of the enveloped occurs in the fusogenic state, the model in FIG. 11B can be considered.

When synthesized as peptides, both DP107 and DP178 are potent inhibitors of HIV infection and fusion, probably by virtue of their ability to form complexes with viral gp41 and interfere with its fusogenic process; e.g., during the structural transition of the viral protein from the native structure to the fusogenic state, the DP178 and DP107 peptides may gain access to their respective binding sites on the viral gp41, and exert a disruptive influence. DP107 peptides which demonstrate anti-HIV activity are described in Applicants' co-pending application Ser. No. 08/264,531, filed Jun. 23, 1994, which is incorporated by reference herein in its entirety.

As shown in the Examples, infra, a truncated recombinant gp41 protein corresponding to the ectodomain of gp41 containing both DP107 and DP178 domains (excluding the fusion peptide, transmembrane region and cytoplasmic domain of gp41) did not inhibit HIV-1 induced fusion. However, when a single mutation was introduced to disrupt the coiled-coil structure of the DP107 domain—a mutation which results in a total loss of biological activity of DP107 peptides—the inactive recombinant protein was transformed to an active inhibitor of HIV-1 induced fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107 domain.

For clarity of discussion, the invention will be described primarily for DP178 peptide inhibitors of HIV. However, the principles may be analogously applied to other viruses, both enveloped and nonenveloped, and to other non-viral organisms.

5.1. DP178 and DP178-Like Peptides

The DP178 peptide (SEQ ID:1) of the invention corresponds to amino acid residues 638 to 673 of the transmembrane protein gp41 from the HIV-1_(LAI) isolate, and has the 36 amino acid sequence (reading from amino to carboxy terminus):

NH₂-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:1

In addition to the full-length DP178 (SEQ ID:1) 36-mer, the peptides of the invention may include truncations of the DP178 (SEQ ID:1) peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP178 (SEQ ID:1) peptides may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide), as shown in Tables I and IA, below.

Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH₂) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.

TABLE I DP178 (SEQ ID NO:1) CARBOXY TRUNCATIONS* X-YTS-Z X-YTSL-Z X-YTSLI-Z X-YTSLIH-Z X-YTSLIHS-Z X-YTSLIHSL-Z X-YTSLIHSLI-Z X-YTSLIHSLIE-Z X-YTSLIHSLIEE-Z X-YTSLIHSLIEES-Z X-YTSLIHSLIEESQ-Z X-YTSLIHSLIEESQN-Z X-YTSLIHSLIEESQNQ-Z X-YTSLIHSLIEESQNQQ-Z X-YTSLIHSLIEESQNQQE-Z X-YTSLIHSLIEESQNQQEK-Z X-YTSLIHSLIEESQNQQEKN-Z X-YTSLIHSLIEESQNQQEKNE-Z X-YTSLIHSLIEESQNQQEKNEQ-Z X-YTSLIHSLIEESQNQQEKNEQE-Z X-YTSLIHSLIEESQNQQEKNEQEL-Z X-YTSLIHSLIEESQNQQEKNEQELL-Z X-YTSLIHSLIEESQNQQEKNEQELLE-Z X-YTSLIHSLIEESQNQQEKNEQELLEL-Z X-YTSLIHSLIEESQNQQEKNEQELLELD-Z X-YTSLIHSLIEESQNQQEKNEQELLELDK-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKW-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWA-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWAS-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWASL-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLW-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWN-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNW-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z (SEQ ID NO:1) (*The one-letter amino acid code is used) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE IA DP178 (SEQ ID NO:1) AMINO TRUNCATIONS* X-NWF-Z X-WNWF-Z X-LWNWF-Z X-SLWNWF-Z X-ASLWNWF-Z X-WASLWNWF-Z X-KWASLWNWF-Z X-DKWASLWNWF-Z X-LDKWASLWNWF-Z X-ELDKWASLWNWF-Z X-LELDKWASLWNWF-Z X-LLELDKWASLWNWF-Z X-ELLELDKWASLWNWF-Z X-QELLELDKWASLWNWF-Z X-EQELLELDKWASLWNWF-Z X-NEQELLELDKWASLWNWF-Z X-KNEQELLELDKWASLWNWF-Z X-EKNEQELLELDKWASLWNWF-Z X-QEKNEQELLELDKWASLWNWF-Z X-QQEKNEQELLELDKWASLWNWF-Z X-NQQEKNEQELLELDKWASLWNWF-Z X-QNQQEKNEQELLELDKWASLWNWF-Z X-SQNQQEKNEQELLELDKWASLWNWF-Z X-ESQNQQEKNEQELLELDKWASLWNWF-Z X-EESQNQQEKNEQELLELDKWASLWNWF-Z X-IEESQNQQEKNEQELLELDKWASLWNWF-Z X-LIEESQNQQEKNEQELLELDKWASLWNWF-Z X-SLIEESQNQQEKNEQELLELDKWASLWNWF-Z X-HSLIEESQNQQEKNEQELLELDKWASLWNWF-Z X-IHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z X-LIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z X-SLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z X-TSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z (SEQ ID NO:1) (*The one-letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

The peptides of the invention also include DP178-like peptides. “DP178-like”, as used herein, refers, first, to DP178 and DP178 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-178-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107×178×4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP178. The DP178-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP178-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.

HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP178-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP178 peptides of the invention. Utilizing the DP178 and DP178 analog sequences described herein, the skilled artisan can readily compile DP178 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.

The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.

Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP178 or DP178 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such insertions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP178 region of the gp41 protein.

Deletions of DP178 (SEQ ID:1) or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP178 or DP178-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences. One or more such deletions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such deletions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

DP178 analogs are further described, below, in Section 5.3.

5.2. DP107 and DP107-Like Peptides

Further, the peptides of the invention include peptides having amino acid sequences corresponding to DP107 analogs. DP107 is a 38 amino acid peptide which exhibits potent antiviral activity, and corresponds to residues 558 to 595 of HIV-1_(LAI) transmembrane (TM) gp41 protein, as shown here:

NH₂-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-COOH (SEQ ID NO:89)

In addition to the full-length DP107 38-mer, the peptides of the invention may include truncations of the DP107 peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP107 peptides may comprise peptides of between 3 and 38 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 38-mer polypeptide), as shown in Tables II and IIA, below. Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH₂) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.

TABLE II DP107 (SEQ ID NO:89) CARBOXY TRUNCATIONS* X-NNL-Z X-NNLL-Z X-NNLLR-Z X-NNLLRA-Z X-NNLLRAI-Z X-NNLLRAIE-Z X-NNLLRAIEA-Z X-NNLLRAIEAQ-Z X-NNLLRAIEAQQ-Z X-NNLLRAIEAQQH-Z X-NNLLRAIEAQQHL-Z X-NNLLRAIEAQQHLL-Z X-NNLLRAIEAQQHLLQ-Z X-NNLLRAIEAQQHLLQL-Z X-NNLLRAIEAQQHLLQLT-Z X-NNLLRAIEAQQHLLQLTV-Z X-NNLLRAIEAQQHLLQLTVW-Z X-NNLLRAIEAQQHLLQLTVWG-Z X-NNLLRAIEAQQHLLQLTVWGI-Z X-NNLLRAIEAQQHLLQLTVWGIK-Z X-NNLLRAIEAQQHLLQLTVWGIKQ-Z X-NNLLRAIEAQQHLLQLTVWGIKQL-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQ-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQA-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQAR-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARI-Z X-NKLLRAIEAQQHLLQLTVWGIKQLQARIL-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILA-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAV-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVE-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVER-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERY-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYL-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLK-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKD-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ- Z (SEQ ID NO:89) (*The one-letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE IIA DP107 (SEQ ID NO:89) AMINO TRUNCATIONS*. X-KDQ-Z X-LKDQ-Z X-YLKDQ-Z X-RYLKDQ-Z X-ERYLKDQ-Z X-VERYLKDQ-Z X-AVERYLKDQ-Z X-LAVERYLKDQ-Z X-ILAVERYLKDQ-Z X-RILAVERYLKDQ-Z X-ARILAVERYLKDQ-Z X-QARILAVERYLKDQ-Z X-LQARILAVERYLKDQ-Z X-QLQARILAVERYLKDQ-Z X-KQLQARILAVERYLKDQ-Z X-IKQLQARILAVERYLKDQ-Z X-GIKQLQARILAVERYLKDQ-Z X-WGIKQLQARILAVERYLKDQ-Z X-VWGIKQLQARILAVERYLKDQ-Z X-TVWGIKQLQARILAVERYLKDQ-Z X-LTVWGIKQLQARILAVERYLKDQ-Z X-QLTVWGIKQLQARILAVERYLKDQ-Z X-LQLTVWGIKQLQARILAVERYLKDQ-Z X-LLQLTVWGIKQLQARILAVERYLKDQ-Z X-HLLQLTVWGIKQLQARILAVERYLKDQ-Z X-QHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-QQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-AQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-EAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-IEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-AIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-RAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-LRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-LLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-NLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z (SEQ ID NO:89) (*The one-letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

The peptides of the invention also include DP107-like peptides. “DP107-like”, as used herein, refers, first, to DP107 and DP107 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-107-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107×178×4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP107. The DP107-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP107-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.

HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP107-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP107 peptides of the invention. Utilizing the DP107 and DP107 analog sequences described herein, the skilled artisan can readily compile DP107 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.

The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP107 peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP107 (SEQ ID:25) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.

Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP107 or DP107 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP107 or DP107 truncations, as long as such insertions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP107 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP107 region of the gp41 protein.

Deletions of DP107 or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP107 or DP107-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences. One or more such deletions may be introduced into DP107 or DP107 truncations, as long as such deletions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.

DP107 and DP107 truncations are more fully described in Applicants' co-pending U.S. patent application Ser. No. 08/374,666, filed Jan. 27, 1995, and which is incorporated herein by reference in its entirety. DP107 analogs are further described, below, in Section 5.3.

5.3. DP107 and DP178 Analogs

Peptides corresponding to analogs of the DP178, DP178 truncations, DP107 and DP107 truncation sequences of the invention, described, above, in Sections 5.1 and 5.2 may be found in other viruses, including, for example, non-HIV-1_(LAI) enveloped viruses, non-enveloped viruses and other non-viral organisms.

The term “analog”, as used herein, refers to a peptide which is recognized or identified via the 107×178×4, ALLMOTI5 and/or PLZIP search strategies discussed below. Further, such peptides may exhibit antifusogenic capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil structures.

Such DP178 and DP107 analogs may, for example, correspond to peptide sequences present in TM proteins of enveloped viruses and may, additionally correspond to peptide sequences present in non enveloped and non-viral organisms. Such peptides may exhibit antifusogenic activity, antiviral activity, most particularly antiviral activity which is specific to the virus in which their native sequences are found, or may exhibit an ability to modulate intracellular processes involving coiled-coil peptide structures.

DP178 analogs are peptides whose amino acid sequences are comprised of the amino acid sequences of peptide regions of, for example, other (i.e., other than HIV-1_(LAI)) viruses that correspond to the gp41 peptide region from which DP178 (SEQ ID:1) was derived. Such viruses may include, but are not limited to, other HIV-1 isolates and HIV-2 isolates. DP178 analogs derived from the corresponding gp41 peptide region of other (i.e., non HIV-1_(LAI)) HIV-1 isolates may include, for example, peptide sequences as shown below.

NH₂-YTNTIYTLLEESQNQQEKNEQELLELDKWASLWNWF-COOH (DP-185; SEQ ID:3);

NH₂-YTGIIYNLLEESQNQQEKNEQELLELDKWANLWNWF-COOH (SEQ ID:4);

NH₂-YTSLIYSLLEKSQIQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:5).

SEQ ID:3 (DP-185), SEQ ID:4, and SEQ ID:5 are derived from HIV-1_(SF2), HIV-1_(RF), and HIV-1_(MN) isolates, respectively. Underlined amino acid residues refer to those residues that differ from the corresponding position in the DP178 (SEQ ID:1) peptide. One such DP178 analog, DP-185 (SEQ ID:3), is described in the Example presented in Section 6, below, where it is demonstrated that DP-185 (SEQ ID:3) exhibits antiviral activity. The DP178 analogs of the invention may also include truncations, as described above. Further, the analogs of the invention modifications such those described for DP178 analogs in Section 5.1., above. It is preferred that the DP178 analogs of the invention represent peptides whose amino acid sequences correspond to the DP178 region of the gp41 protein, it is also contemplated that the peptides of the invention may, additionally, include amino sequences, ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 amino acid sequence.

Striking similarities, as shown in FIG. 1, exist within the regions of HIV-1 and HIV-2 isolates which correspond to the DP178 sequence. A DP178 analog derived from the HIV-2_(NHZ) isolate has the 36 amino acid sequence (reading from amino to carboxy terminus):

NH₂-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-COOH (SEQ ID:7)

Table III and Table IV show some possible truncations of the HIV-2_(NHZ) DP178 analog, which may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide). Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH₂) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.

TABLE III HIV-2_(NIHZ) DP178 ANALOG (SEQ ID NO:7) CARBOXY TRUNCATIONS*. X-LEA-Z X-LEAN-Z X-LEANI-Z X-LEANIS-Z X-LEANISQ-Z X-LEANISQS-Z X-LEANISQSL-Z X-LEANISQSLE-Z X-LEANISQSLEQ-Z X-LEANISQSLEQA-Z X-LEANISQSLEQAQ-Z X-LEANISQSLEQAQI-Z X-LEANISQSLEQAQIQ-Z X-LEANISQSLEQAQIQQ-Z X-LEANISQSLEQAQIQQE-Z X-LEANISQSLEQAQIQQEK-Z X-LEANISQSLEQAQIQQEKN-Z X-LEANISQSLEQAQIQQEKNM-Z X-LEANISQSLEQAQIQQEKNMY-Z X-LEANISQSLEQAQIQQEKNMYE-Z X-LEANISQSLEQAQIQQEKMMYEL-Z X-LEANISQSLEQAQIQQEKNMYELQ-Z X-LEANISQSLEQAQIQQEKNMYELQK-Z X-LEANISQSLEQAQIQQEKNMYELQKL-Z X-LEANISQSLEQAQIQQEKNMYELQKLN-Z X-LEANISQSLEQAQIQQEKNMYELQKLNS-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSW-Z X-LEAMISQSLEQAQIQQEKNMYELQKLNSWD-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDV-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVF-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFT-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTN-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNW-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL- Z (SEQ ID NO:7) (*The one-letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE IV HIV-2_(NIHZ) DP178 ANALOG (SEQ ID NO:7) AMINO TRUNCATIONS*. X-NWL-Z X-TNWL-Z X-FTNWL-Z X-VFTNWL-Z X-DVFTNWL-Z X-WDVFTNWL-Z X-SWDVFTNWL-Z X-NSWDVFTNWL-Z X-LNSWDVFTNWL-Z X-KLNSWDVFTNWL-Z X-QKLNSWDVFTNWL-Z X-LQKLNSWDVFTNWL-Z X-ELQKLNSWDVFTNWL-Z X-YELQKLNSWDVFTNWL-Z X-MYELQKLNSWDVFTNWL-Z X-NMYELQKLNSWDVFTNWL-Z X-KNMYELQKLNSWDVFTNWL-Z X-EKNMYELQKLNSWDVFTNWL-Z X-QEKNMYELQKLNSWDVFTNWL-Z X-QQEKNMYELQKLNSWDVFTNWL-Z X-IQQEKNMYELQKLNSWDVFTNWL-Z X-QIQQEKNMYELQKLNSWDVFTNWL-Z X-AQIQQEKNMYELQKLNSWDVFTNWL-Z X-QAQIQQEKNMYELQKLNSWDVFTNWL-Z X-EQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-LEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-SLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-QSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-SQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-ISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-NISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-ANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-EANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z (SEQ ID NO:7) (*The one-letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

DP178 and DP107 analogs are recognized or identified, for example, by utilizing one or more of the 107×178×4, ALLMOTI5 or PLZIP computer-assisted search strategies described and demonstrated, below, in the Examples presented in Sections 9 through 16 and 19 through 25. The search strategy identifies additional peptide regions which are predicted to have structural and/or amino acid sequence features similar to those of DP107 and/or DP178.

The search strategies are described fully, below, in the Example presented in Section 9. While this search strategy is based, in part, on a primary amino acid motif deduced from DP107 and DP178, it is not based solely on searching for primary amino acid sequence homologies, as such protein sequence homologies exist within, but not between major groups of viruses. For example, primary amino acid sequence homology is high within the TM protein of different strains of HIV-1 or within the TM protein of different isolates of simian immunodeficiency virus (SIV). Primary amino acid sequence homology between HIV-1 and SIV, however, is low enough so as not to be useful. It is not possible, therefore, to find peptide regions similar to DP107 or DP178 within other viruses, or within non-viral organisms, whether structurally, or otherwise, based on primary sequence homology, alone.

Further, while it would be potentially useful to identify primary sequence arrangements of amino acids based on, for example, the physical chemical characteristics of different classes of amino acids rather than based on the specific amino acids themselves, such search strategies have, until now, proven inadequate. For example, a computer algorithm designed by Lupas et al. to identify coiled-coil propensities of regions within proteins (Lupas, A., et al., 1991 Science 252:1162-1164) is inadequate for identifying protein regions analogous to DP107 or DP178.

Specifically, analysis of HIV-1 gp160 (containing both gp120 and gp41) using the Lupas algorithm does not identify the coiled-coil region within DP107. It does, however, identify a region within DP178 beginning eight amino acids N-terminal to the start of DP178 and ending eight amino acids from the C-terminus. The DP107 peptide has been shown experimentally to form a stable coiled coil. A search based on the Lupas search algorithm, therefore, would not have identified the DP107 coiled-coil region. Conversely, the Lupas algorithm identified the DP178 region as a potential coiled-coil motif. However, the peptide derived from the DP178 region failed to form a coiled coil in solution.

A possible explanation for the inability of the Lupas search algorithm to accurately identify coiled-coil sequences within the HIV-1 TM, is that the Lupas algorithm is based on the structure of coiled coils from proteins that are not structurally or functionally similar to the TM proteins of viruses, antiviral peptides (e.g. DP107 and DP178) of which are an object of this invention.

The computer search strategy of the invention, as demonstrated in the Examples presented below, in Sections 9 through 16 and 19 through 25, successfully identifies regions of proteins similar to DP107 or DP178. This search strategy was designed to be used with a commercially-available sequence database package, preferably PC/Gene.

A series of search motifs, the 107×178×4, ALLMOTI5 and PLZIP motifs, were designed and engineered to range in stringency from strict to broad, as discussed in this Section and in Section 9, with 107×178×4 being preferred. The sequences identified via such search motifs, such as those listed in Tables V-XIV, below, potentially exhibit antifusogenic, such as antiviral, activity, may additionally be useful in the identification of antifusogenic, such as antiviral, compounds, and are intended to be within the scope of the invention.

Coiled-coiled sequences are thought to consist of heptad amino acid repeats. For ease of description, the amino acid positions within the heptad repeats are sometimes referred to as A through G, with the first position being A, the second B, etc. The motifs used to identify DP107-like and DP178-like sequences herein are designed to specifically search for and identify such heptad repeats. In the descriptions of each of the motifs described, below, amino acids enclosed by brackets, i.e., [ ], designate the only amino acid residues that are acceptable at the given position, while amino acids enclosed by braces, i.e., { }, designate the only amino acids which are unacceptable at the given heptad position. When a set of bracketed or braced amino acids is followed by a number in parentheses i.e., ( ), it refers to the number of subsequent amino acid positions for which the designated set of amino acids hold, e.g, a (2) means “for the next two heptad amino acid positions”.

The ALLMOTI5 is written as follows:

{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−

{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−

{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−

{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−

{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−.

Translating this motif, it would read: “at the first (A) position of the heptad, any amino acid residue except C, D, G, H, or P is acceptable, at the next two (B,C) amino acid positions, any amino acid residue except C, F, or P is acceptable, at the fourth heptad position (D), any amino acid residue except C, D, G, H, or P is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, or P is acceptable. This motif is designed to search for five consecutive heptad repeats (thus the repeat of the first line five times), meaning that it searches for 35-mer sized peptides. It may also be designed to search for 28-mers, by only repeating the initial motif four times. With respect to the ALLMOTI5 motif, a 35-mer search is preferred. Those viral (non-bacteriophage) sequences identified via such an ALLMOTI5 motif are listed in Table V, below, at the end of this Section. The viral sequences listed in Table V potentially exhibit antiviral activity, may be useful in the identification of antiviral compounds, and are intended to be within the scope of the invention. In those instances wherein a single gene exhibits greater than one sequence recognized by the ALLMOTI5 search motif, the amino a cid residue numbers of these sequences are listed under “Area 2”, Area 3”, etc. This convention is used for each of the Tables listed, below, at the end of this Section.

The 107×178×4 motif is written as follows:

[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−

[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−

[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−

[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−

Translating this motif, it would read: “at the first (A) position of the heptad, only amino acid residue E, F, I, K, L, N, Q, SI T, V, W, or Y is acceptable, at the next two (B,C) amino acid positions, any amino acid residue except C, F, M or P is acceptable, at the fourth position (D), only amino acid residue E, F, I, K, L, N, Q, S, T, V, W, or Y is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, M or P is acceptable. This motif is designed to search for four consecutive heptad repeats (thus the repeat of the first line four times), meaning that it searches for 28-mer sized peptides. It may also be designed to search for 35-mers, by repeating the initial motif five times. With respect to the 107×178×4 motif, a 28-mer search is preferred.

Those viral (non-bacteriophage) sequences identified via such a 107×178×4 motif are listed in Table VI, below, at the end of this Section, with those viral (non-bacteriophage) sequences listed in Table VII, below at the end of this Section, being preferred.

The 107×178×4 search motif was also utilized to identify non-viral procaryotic protein sequences, as listed in Table VIII, below, at the end of this Section. Further, this search motif was used to reveal a number of human proteins. The results of this human protein 107×178×4 search is listed in Table IX, below, at the end of this Section. The sequences listed in Tables VIII and IX, therefore, reveal peptides which may be useful as antifusogenic compounds or in the identification of antifusogenic compounds, and are intended to be within the scope of the invention.

The PLZIP series of motifs are as listed in FIG. 19. These motifs are designed to identify leucine zipper coiled-coil like heptads wherein at least one proline residue is present at some predefined distance N-terminal to the repeat. These PLZIP motifs find regions of proteins with similarities to HIV-1 DP178 generally located just N-terminal to the transmembrane anchor. These motifs may be translated according to the same convention described above. Each line depicted in FIG. 19 represents a single, complete search motif. “X” in these motifs refers to any amino acid residue. In instances wherein a motif contains two numbers within parentheses, this refers to a variable number of amino acid residues. For example, X (1,12) is translated to “the next one to twelve amino acid residues, inclusive, may be any amino acid”.

Tables X through XIV, below, at the end of this Section, list sequences identified via searches conducted with such PLZIP motifs. Specifically, Table X lists viral sequences identified via PCTLZIP, P1CTLZIP and P2CTLZIP search motifs, Table XI lists viral sequences identified via P3CTLZIP, P4CTLZIP, P5CTLZIP and P6CTLZIP search motifs, Table XII 1sts viral sequences identified via P7CTLZIP, P8CTLZIP and P9CTLZIP search motifs, Table XIII lists viral sequences identified via P12LZIPC searches and Table XIV lists viral sequences identified via P23TLZIPC search motifs The viral sequences listed in these tables represent peptides which potentially exhibit antiviral activity, may be useful in the identification of antiviral compounds, and are intended to be within the scope of the invention.

The Examples presented in Sections 17, 18, 26 and 27 below, demonstrate that viral sequences identified via the motif searches described herein identify substantial antiviral characteristics. Specifically, the Example presented in Section 17 describes peptides with anti-respiratory syncytial virus activity, the Example presented in Section 18 describes peptides with anti-parainfluenza virus activity, the Example presented in Section 26 describes peptides with anti-measles virus activity and the Example presented in Section 27 describes peptides with anti-simian immunodeficiency virus activity.

The DP107 and DP178 analogs may, further, contain any of the additional groups described for DP178, above, in Section 5.1. For example, these peptides may include any of the additional amino-terminal groups as described above for “X” groups, and may also include any of the carboxy-terminal groups as described, above, for “Z” groups.

Additionally, truncations of the identified DP107 and DP178 peptides are among the peptides of the invention. Further, such DP107 and DP178 analogs and DP107/DP178 analog truncations may exhibit one or more amino acid substitutions, insertion, and/or deletions. The DP178 analog amino acid substitutions, insertions and deletions, are as described, above, for DP178-like peptides in Section 5.1. The DP-107 analog amino acid substitutions, insertions and deletions are also as described, above, for DP107-like peptides in Section 5.2.

Tables XV through XXII, below, present representative examples of such DP107/DP178 truncations. Specifically, Table XV presents Respiratory Syncytial Virus F1 region DP107 analog carboxy truncations, Table XVI presents Respiratory Syncytial Virus F1 region DP107 analog amino truncations, Table XVII presents Respiratory Syncytial Virus F1 region DP178 analog carboxy truncations, Table XVIII presents Respiratory Syncytial Virus F1 region DP178 analog amino truncations, Table XIX presents Human Parainfluenza Virus 3 F1 region DP178 analog carboxy truncations, Table XX presents Human Parainfluenza Virus 3 F1 region DP178 analog amino truncations, Table XXI presents Human Parainfluenza Virus 3 F1 region DP107 analog carboxy truncations and Table XXII presents Human Parainfluenza Virus 3 F1 region DP107 analog amino truncations. Further, Table XXIII, below, presents DP107/DP178 analogs and analog truncations which exhibit substantial antiviral activity. These antiviral peptides are grouped according to the specific virus which they inhibit, including respiratory syncytial virus, human parainfluenza virus 3, simian immunodeficiency virus and measles virus.

TABLE V ALLMOTI5 SEARCH RESULTS SUMMARY FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS PCGENE ALLMOT15 All Viruses (no bacteriophage) AREA AREA AREA AREA AREA AREA AREA AREA FILE NAME PROTEIN VIRUS 1 2 3 4 5 6 7 8 P170K_TRVPS POTENTIAL 170 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN PSG) 113-153 P194K_TRVSY POTENTIAL 194 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN SYM 144-178 214-248 391-446 634-678 1045- 1135- 1355- 1618- 1079 1176 1376 1655 P55KD_HSV6U 53 8 KD PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 228-262 PAANT_HDVAM DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 3-48 100-144 PAANT_HDVDJ DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE D380) 7-48 100-144 PAANT_HDVIT DELTA ANTIGEN (ALPHA ANTIGEN) HEPATITIS DELTA VIRUS (ISOLATE ITALIAN) 3-48 100-144 PAANT_HDVL1 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE LEBANON-1) 3-48 PAANT_HDVM1 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE JAPANESE M-1) 3-48 100-144 PAANT_HDVM2 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE JAPANESE M-2) 3-48 100-144 PAANT_HDVNA DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE NAURU) 3-48 100-144 PAANT_HDVS1 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE JAPANESE S-1) 1-49 100-144 PAANT_HDVS2 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE JAPANESE S-2) 1-49 100-144 PAANT_HDVWO DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE WOODCHUCK) 3-48 100-144 PAT3H_FOWPM ANTITHROMBIN-III HOMOLOG FOWLPOX VIRUS (ISOLATE HP-438) 71-110 PATI1_VACCV 94 KD A-TYPE INCLUSION PROTEIN VACCINIA VIRUS (STRAIN WR) 14-57 420-564 570-625 PATI1_VARV 81 KD A-TYPE INCLUSION PROTEIN VARIOLA VIRUS 425-525 531-565 571-628 PATI2_HSV11 ALPHA TRANS-INDUCING FACTOR HERPES SIMPLEX VIRUS (TYPE 1) 304-345 PATI2_HSV1F ALPHA TRANS-INDUCING FACTOR HERPES SIMPLEX VIRUS (TYPE 1) 102-139 304-345 PATI2_HSVEB ALPHA TRANS-INDUCING FACTOR EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 101-147 268-331 PATI2_VACCC PUTATIVE A-TYPE INCLUSION PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 79-124 219-263 PATI2_VACCV PUTATIVE A-TYPE INCLUSION PROTEIN VACCINIA VIRUS 79-124 PATI2_VZVD ALPHA TRANS-INDUCING FACTOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 298-361 395-429 PATI3_VACCV PUTATIVE A-TYPE INCLUSION PROTEIN VACCINIA VIRUS 51-95 PATIN_HSV23 ALPHA TRANS-INDUCING PROTEIN (VMW65) HERPES SIMPLEX VIRUS (TYPE 2) 178-219 324-381 PATIN_HSV2H ALPHA TRANS-INDUCING PROTEIN (VMW65) HERPES SIMPLEX VIRUS (TYPE 2) 177-222 324-381 PATIN_HSVBP ALPHA TRANS-INDUCING PROTEIN BOVINE HERPES VIRUS TYPE 1 195-256 PATIN_HSVEB ALPHA TRANS-INDUCING PROTEIN EQUINE HERPES VIRUS TYPE 1 241-289 PATIN_VZVD ALPHA TRANS-INDUCING PROTEIN ( VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 206-252 PATI_COWPX A-TYPE INCLUSION PROTEIN COWPOX VIRUS 14-57 426-526 532-566 572-629 803-989 1106- 1150 PBDL2_EBV PROTEIN BDLF2 EPSTEIN-BARR VIRUS (STRAIN B95-8) 90-131 PBRL1_EBV TRANSCRIPTION ACTIVATOR BRLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 150-187 PCOA1_POVBA COAT PROTEIN VP1 POLYOMAVIRUS BK 107-141 PCOA1_POVBK COAT PROTEIN VP1 POLYOMAVIRUS BK 107-141 PCOA1_POVHA COAT PROTEIN VP1 HAMSTER POLYOMAVIRUS 159-195 PCOA1_SV40 COAT PROTEIN VP1 SIMIAN VIRUS 40 109-143 PCOA2_BFDV COAT PROTEIN VP2 BUDGERIGAR FLEDGLING DISEASE VIRUS 141-213 PCOA2_POVBA COAT PROTEIN VP2 POLYOMAVIRUS BK (STRAIN AS) 14-64 317-351 PCOA2_POVBK COAT PROTEIN VP2 POLYOMAVIRUS BK 14-64 317-351 PCOA2_POVBO COAT PROTEIN VP2 BOVINE POLYOMAVIRUS 35-76 153-216 PCOA2_POVHA COAT PROTEIN VP2 HAMSTER POLYOMAVIRUS 7-48 174-208 PCOA2_POVJC COAT PROTEIN VP2 POLYOMAVIRUS JC 14-64 233-267 PCOA2_POVLY COAT PROTEIN VP2 LYMPHOTROPIC POLYOMAVIRUS 14-78 156-206 PCOA2_POVM3 COAT PROTEIN VP2 MOUSE POLYOMAVIRUS (STRAIN 3) 5-72 137-185 PCOA2_POVMA COAT PROTEIN VP2 MOUSE POLYOMAVIRUS 5-72 137-185 PCOA2_POVMC COAT PROTEIN VP2 MOUSE POLYOMAVIRUS 5-72 137-185 PCOA2_POVMK COAT PROTEIN VP2 MOUSE POLYOMAVIRUS 15-56 177-211 PCOA2_SV40 COAT PROTEIN VP2 SIMIAN VIRUS 40 14-62 228-262 318-352 PCOAT_ABMVW COAT PROTEIN ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA 180-214 PCOAT_ACLSV COAT PROTEIN APPLE CHLOROTIC LEAF SPOT VIRUS 154-188 PCOAT_AEDEV COAT PROTEIN VP1 AEDES DENSONUCLEOSIS VIRUS 243-284 PCOAT_AMCV COAT PROTEIN ARTICHOKE MOTTLED CRINKLE VIRUS 36-70 100-134 PCOAT_BLRV COAT PROTEIN BEAN LEAFROLL VIRUS 89-123 PCOAT_BMV COAT PROTEIN BROME MOSAIC VIRUS 36-73 PCOAT_BYDV1 COAT PROTEIN BARLEY YELLOW DWARF VIRUS 163-197 PCOAT_BYDVM COAT PROTEIN BARLEY YELLOW DWARF VIRUS 163-197 PCOAT_BYDVP COAT PROTEIN BARLEY YELLOW DWARF VIRUS 164-198 PCOAT_BYDVR COAT PROTEIN BARLEY YELLOW DWARF VIRUS 164-198 PCOAT_CAMVC COAT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN 56-90 186-223 PCOAT_CAMVD COAT PROTEIN CAULIFLOWER MOSAIC VIRUS 53-91 187-224 PCOAT_CAMVE COAT PROTEIN CAULIFLOWER MOSAIC VIRUS 56-90 186-223 PCOAT_CAMVN COAT PROTEIN CAULIFLOWER MOSAIC VIRUS 56-90 185-222 PCOAT_CAMVS COAT PROTEIN CAULIFLOWER MOSAIC VIRUS 53-91 187-224 PCOAT_CARMV COAT PROTEIN CARNATION MOTTLE VIRUS 13-51 PCOAT_CCMV COAT PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS 141-178 PCOAT_CERV PROBABLE COAT PROTEIN CARNATION ETCHED RING VIRUS 192-226 PCOAT_CHVP1 MAJOR CAPSID PROTEIN PARAMECIUM BURSARIA CHLORELLA VIRUS 1 393-435 PCOAT_CLVK COAT PROTEIN CASSAVA LATENT VIRUS 197-231 PCOAT_CLVN COAT PROTEIN CASSAVA LATENT VIRUS 197-231 PCOAT_CMVFC COAT PROTEIN CUCUMBER MOSAIC VIRUS 153-187 PCOAT_CMVI COAT PROTEIN CUCUMBER MOSAIC VIRUS 153-187 PCOAT_CMVP6 COAT PROTEIN CUCUMBER MOSAIC VIRUS 153-187 PCOAT_CMVQ COAT PROTEIN CUCUMBER MOSAIC VIRUS 153-187 PCOAT_CMVWL COAT PROTEIN CUCUMBER MOSAIC VIRUS 153-187 PCOAT_CMVY COAT PROTEIN CUCUMBER MOSAIC VIRUS 153-187 PCOAT_CNV COAT PROTEIN CUCUMBER NECROSIS VIRUS 328-365 PCOAT_CSMV COAT PROTEIN CHLORIS STRIATE MOSAIC VIRUS 184-218 PCOAT_CTV36 COAT PROTEIN CITRUS TRISTEZA VIRUS 79-120 PCOAT_CYMV COAT PROTEIN CLOVER YELLOW MOSAIC VIRUS 162-204 PCOAT_EPMV COAT PROTEIN EGGPLANT MOSAIC VIRUS 40-74 PCOAT_FCVC6 COAT PROTEIN FELINE CALICIVIRUS 432-466 566-600 PCOAT_FCVF4 COAT PROTEIN FELINE CALICIVIRUS 502-550 566-600 PCOAT_FCVF9 COAT PROTEIN FELINE CALICIVIRUS 519-553 569-603 PCOAT_FMVD PROBABLE COAT PROTEIN FIGWORT MOSAIC VIRUS 144-199 206-247 449-483 PCOAT_FXMV COAT PROTEIN FOXTAIL MOSAIC VIRUS 168-220 PCOAT_IRV1 CAPSID PROTEIN TIPULA IRIDESCENT VIRUS 90-124 PCOAT_IRV22 CAPSID PROTEIN SIMULIUM IRIDESCENT VIRUS 90-124 PCOAT_IRV6 CAPSID PROTEIN CHILO IRIDESCENT VIRUS 51-85 PCOAT_LSV COAT PROTEIN LILY SYMPTOMLESS VIRUS 32-70 255-289 PCOAT_MSTV COAT PROTEIN MAIZE STEAK VIRUS 7-76 84-121 PCOAT_MSVK COAT PROTEIN MAIZE STEAK VIRUS 187-221 PCOAT_MSVN COAT PROTEIN MAIZE STEAK VIRUS 187-221 PCOAT_MSVS COAT PROTEIN MAIZE STEAK VIRUS 187-221 PCOAT_ORSV COAT PROTEIN ODONTOGLOSSUM RINGSPOT VIRUS 105-139 PCOAT_PAVBO COAT PROTEIN VP2 BOVINE PARVOVIRUS 380-414 444-480 PCOAT_PAVC7 COAT PROTEIN VP1 CANINE PARVOVIRUS 497-531 PCOAT_PEBV COAT PROTEIN PEA EARLY BROWNING VIRUS 73-114 PCOAT_POPMV COAT PROTEIN POPLAR MOSAIC VIRUS 36-81 PCOAT_PPMVS COAT PROTEIN PEPPER MILD MOTTLE VIRUS 104-138 PCOAT_PVSP COAT PROTEIN POTATO VIRUS 38-72 251-292 PCOAT_PYMVV COAT PROTEIN POTATO YELLOW MOSAIC VIRUS 190-224 PCOAT_RBDV COAT PROTEIN RASPBERRY BUSHY DWARF VIRUS 10-44 140-199 PCOAT_RCNMV COAT PROTEIN RED CLOVER NECROTIC MOSAIC VIRUS 272-306 PCOAT_RSV COAT PROTEIN RICE STRIPE VIRUS 34-68 83-120 259-309 PCOAT_SLCV COAT PROTEIN SQUASH LEAF CURL VIRUS 190-224 PCOAT_SMWLM COAT PROTEIN SATELLITE MAIZE WHITE LINE MOSAIC VIRUS 66-100 PCOAT_SOCMV COAT PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 128-166 PCOAT_STNV1 COAT PROTEIN SATELLITE TOBACCO NECROSIS VIRUS 1 2-50 PCOAT_STNV2 COAT PROTEIN SATELLITE TOBACCO NECROSIS VIRUS 2 38-72 PCOAT_TAMV GENOME POLYPROTEIN TAMARILLO MOSAIC VIRUS 7-55 PCOAT_TAV COAT PROTEIN TOMATO ASPERMY VIRUS 14-48 PCOAT_TBSVB COAT PROTEIN TOMATO BUSHY STUNT VIRUS 1-37 43-77 PCOAT_TBSVC COAT PROTEIN TOMATO BUSHY STUNT VIRUS 44-78 100-134 PCOAT_TCV COAT PROTEIN TURNIP CRINKLE VIRUS 12-46 PCOAT_TGMV COAT PROTEIN TOMATO GOLDEN MOSAIC VIRUS 186-220 PCOAT_TMGMV COAT PROTEIN TOBACCO MILD GREEN MOSAIC VIRUS 103-137 PCOAT_TMV COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMV06 COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMVCO COAT PROTEIN TOBACCO MOSAIC VIRUS 76-138 PCOAT_TMVDA COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMVER COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMVHR COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMVO COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMVOM COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TMVTO COAT PROTEIN TOBACCO MOSAIC VIRUS 103-137 PCOAT_TRVCA COAT PROTEIN TOBACCO RATTLE VIRUS 71-109 PCOAT_TRVTC COAT PROTEIN TOBACCO RATTLE VIRUS 69-103 PCOAT_TYDVA COAT PROTEIN TOBACCO YELLOW DWARF VIRUS 2-36 PCOAT_TYMV COAT PROTEIN TURNIP YELLOW MOSAIC VIRUS 41-75 PCOAT_TYMVA COAT PROTEIN TURNIP YELLOW MOSAIC VIRUS 41-75 PCOAT_WCMVO COAT PROTEIN WHITE CLOVER MOSAIC VIRUS 163-197 PCORA_HPBGS CORE ANTIGEN GROUND SQUIRREL HEPATITIS VIRUS 94-135 PCORA_HPBV9 CORE ANTIGEN HEPATITIS B VIRUS 111-149 PCORA_WHV1 CORE ANTIGEN WOODCHUCK HEPATITIS VIRUS 1 62-106 PCORA_WHV8 CORE ANTIGEN WOODCHUCK HEPATITIS VIRUS 8 62-106 PD250_ASFB7 PROTEIN D250R AFRICAN SWINE FEVER VIRUS 198-232 PDNB2_ADE02 EARLY E2A DNA-BINDING PROTEIN HUMAN ADENOVIRUS TYPE 2 291-336 PDNB2_ADE05 EARLY E2A DNA-BINDING PROTEIN HUMAN ADENOVIRUS TYPE 5 291-336 PDNB1_EBV MAJOR DNA-BINDING PROTEIN EPSTEIN-BARR VIRUS 215-252 718-752 974- 1027- 1009 1068 PDNB1_HCMVA MAJOR DNA-BINDING PROTEIN HUMAN CYTOMEGALOVIRUS 338-372 1013- 1070 PDNB1_HSV11 MAJOR DNA-BINDING PROTEIN HERPES SIMPLEX VIRUS 557-595 599-640 769-803 1079- 1140 PDNB1_HSV1F MAJOR DNA-BINDING PROTEIN HERPES SIMPLEX VIRUS 557-595 599-640 769-803 1079- 1140 PDNB1_HSV1K MAJOR DNA-BINDING PROTEIN HERPES SIMPLEX VIRUS 557-595 599-640 769-803 1079- 1140 PDNB1_HSVB2 MAJOR DNA-BINDING PROTEIN BOVINE HERPES VIRUS TYPE 2 552-591 599-633 1048- 1131 PDNB1_HSVE1 MAJOR DNA-BINDING PROTEIN EQUINE HERPES VIRUS TYPE 1 273-314 PDNB1_HSVEB MAJOR DNA-BINDING PROTEIN EQUINE HERPES VIRUS TYPE 1 617-658 1107- 1148 PDNB1_HSVSA MAJOR DNA-BINDING PROTEIN HERPES VIRUS SAIMIRI 222-259 330-367 506-557 873-907 PDNB1_MCMVS MAJOR DNA-BINDING PROTEIN MURINE CYTOMEGALOVIRUS 584-618 987- 1125 PDNB1_SCMVC MAJOR DNA-BINDING PROTEIN SIMIAN CYTOMEGALOVIRUS 525-562 PDNB1_VZVD MAJOR DNA-BINDING PROTEIN VARICELLA-ZOSTER VIRUS 613-650 1043- 1077 PDNL1_ASFM2 DNA LIGASE AFRICAN SWINE FEVER VIRUS 72-106 PDNL1_VACCC DNA LIGASE VACCINIA VIRUS 395-436 PDNL1_VACCV DNA LIGASE VACCINIA VIRUS 395-436 PDNL1_VARV DNA LIGASE VARIOLA VIRUS 395-436 PDPOL_ADE02 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 2 667-743 PDPOL_ADE05 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 5 667-743 PDPOL_ADE07 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 7 733-809 PDPOL_ADE12 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 12 665-741 PDPOL_CBEPV DNA POLYMERASE CHORISTONEURA BIENNIS ENTOMOPOXVIRUS 23-64 202-240 PDPOL_CHVN2 DNA POLYMERASE CHLORELLA VIRUS NY-2A 247-284 PDPOL_CHVP1 DNA POLYMERASE PARAMECIUM BURSARIA CHLORELLA VIRUS 1 247-284 PDPOL_FOWPV DNA POLYMERASE FOWLPOX VIRUS 17-51 80-114 371-412 PDPOL_HCMVA DNA POLYMERASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 753-787 1033- 1074 PDPOL_HPBDB DNA POLYMERASE DUCK HEPATITIS B VIRUS 5-39 PDPOL_HPBDC DNA POLYMERASE DUCK HEPATITIS B VIRUS (STRAIN CHINA) 5-39 PDPOL_HPBDW DNA POLYMERASE DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK ISOLATE 5-39 297-338 S3 PDPOL_HPBGS DNA POLYMERASE GROUND SQUIRREL HEPATITIS VIRUS 291-325 PDPOL_HPBHE DNA POLYMERASE HERON HEPATITIS B VIRUS 5-39 224-265 557-595 PDPOL_HPBVY DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE AYW) 201-235 PDPOL_HPBVZ DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADYW) 201-235 PDPOL_HSV11 DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 511-559 PDPOL_HSV1A DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI 511-559 PDPOL_HSV1K DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 511-559 PDPOL_HSV1S DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16) 511-559 PDPOL_HSV21 DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 186) 512-560 PDPOL_HSVEB DNA POLYMERASE EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 494-528 PDPOL_HSV11 DNA POLYMERASE ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) 33-67 328-366 401-435 706-749 808-858 PDPOL_NPVAC DNA POLYMERASE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 595-646 PDPOL_VACCC DNA POLYMERASE VACCINIA VIRUS (STRAIN COPENHAGEN) 627-683 770-818 828-862 PDPOL_VACCV DNA POLYMERASE VACCINIA VIRUS (STRAIN WR) 627-683 770-818 828-862 PDPOL_VARV DNA POLYMERASE VARIOLA VIRUS 626-682 769-817 827-861 PDPOL_VZVD DNA POLYMERASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 473-533 PDPOL_WHV1 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 1 285-326 PDPOL_WHV59 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 59 290-331 PDPOL_WHV7 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 7 290-331 PDPOL_WHV8 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 289-330 PDPOL_WHV81 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE) 290-331 PDPOM_HPBVY DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE AYW) 201-235 PDUT_HSVEB DEOXYURIDINE 5′-TRIPHOSPHATE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P 135-169 NUCLEOTIDOHY PDUT_HSVSA DEOXYURIDINE 5′-TRIPHOSPHATE HERPES VIRUS SAIMIRI (STRAIN 11) 179-223 NUCLEOTIDOHY PE1A_ADE41 EARLY E1A 27 KD PROTEIN HUMAN ADENOVIRUS TYPE 41 107-141 PE1BL_ADE40 E1B PROTEIN, LARGE T-ANTIGEN HUMAN ADENOVIRUS TYPE 40 102-166 PE1BS_ADE02 E1B PROTEIN, SMALL T-ANTIGEN HUMAN ADENOVIRUS TYPE 2 103-137 PE1BS_ADE05 E1B PROTEIN, SMALL T-ANTIGEN HUMAN ADENOVIRUS TYPE 5 103-137 PE1BS_ADE12 E1B PROTEIN, SMALL T-ANTIGEN HUMAN ADENOVIRUS TYPE 12 96-131 PE1BS_ADE40 E1B PROTEIN, SMALL T-ANTIGEN HUMAN ADENOVIRUS TYPE 40 100-134 PE1BS_ADE41 E1B PROTEIN, SMALL T-ANTIGEN HUMAN ADENOVIRUS TYPE 41 100-134 PE1BS_ADEM1 E1B PROTEIN, SMALL T-ANTIGEN MOUSE ADENOVIRUS TYPE 1 119-173 PE314_ADE02 EARLY E3B 14 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 2-39 PE314_ADE03 EARLY E3 15.3 KD PROTEIN HUMAN ADENOVIRUS TYPE 3 8-49 PE314_ADE05 EARLY E3 14.5 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 2-39 PE314_ADE07 EARLY E3 15.3 KD PROTEIN HUMAN ADENOVIRUS TYPE 7 7-48 PE320_ADE35 EARLY E3 20.3 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 35 70-107 PE321_ADE35 EARLY E3 20.6 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 35 125-169 PE411_ADE02 PROBABLE EARLY E4 11 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 10-44 PE411_ADE05 PROBABLE EARLY E4 11 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 10-44 PEAR_EBV EARLY ANTIGEN PROTEIN R EPSTEIN-BARR VIRUS (STRAIN B95-8) 123-157 PEBN4_EBV EBNA-4 NUCLEAR PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 487-521 PEFT1_VARV EARLY TRANSCRIPTION FACTOR 70 KD SUB- VARIOLA VIRUS 23-171 307-341 UNIT PENV1_FRSFV ENV POLYPROTEIN PRECURSOR FRIEND SPLEEN FOCUS-FORMING VIRUS 341-375 PENV2_FRSFV ENV POLYPROTEIN PRECURSOR FRIEND SPLEEN FOCUS-FORMING VIRUS 341-378 PENV_AVIRE ENV POLYPROTEIN AVIAN RETICULOENDOTHELIOSIS VIRUS 420-472 PENV_AVIAN ENV POLYPROTEIN AVIAN SPLEEN NECROSIS VIRUS 426-478 PENV_BAEVM ENV POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 390-456 PENV_BIV06 ENV POLYPROTEIN PRECURSOR BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) 10-44 88-122 221-255 530-610 635-691 PENV_BIV27 ENV POLYPROTEIN PRECURSOR BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) 10-44 88-122 159-193 250-284 559-639 664-724 PENV_BLVAF ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE FLK) 304-379 PENV_BLVAU ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) 304-379 PENV_BLVAV ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE VDM) 304-379 PENV_BLVB2 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB285) 304-379 PENV_BLVB5 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB59) 304-379 PENV_BLVJ ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) 304-379 PENV_CAEVC ENV POLYPROTEIN PRECURSOR CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) 157-196 615-720 751-785 847-895 PENV_CAEVG ENV POLYPROTEIN PRECURSOR CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN G63) 154-193 613-718 749-783 845-893 PENV_E1AV1 ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-1) 39-76 436-525 559-593 668-716 PENV_E1AV2 ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-2) 39-76 436-525 559-593 658-692 PENV_E1AV3 ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-3) 39-76 436-525 559-593 658-716 PENV_E1AV5 ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-5) 38-76 437-526 560-594 659-693 PENV_E1AV9 ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) 39-76 436-525 559-593 658-716 PENV_E1AVC ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 39-76 436-525 559-593 658-716 PENV_E1AVW ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (STRAIN WSU5) 39-76 436-525 559-593 658-716 PENV_E1AVY ENV POLYPROTEIN PRECURSOR EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) 39-76 436-525 559-593 658-716 PENV_FENV1 ENV POLYPROTEIN PRECURSOR FELINE ENDOGENOUS VIRUS ECE1 503-555 567-604 PENV_FTVPE ENVELOPE POLYPROTEIN PRECURSOR FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) 610-690 715-756 PENV_FTVSD ENVELOPE POLYPROTEIN PRECURSOR FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO) 601-688 713-754 PENV_FTVT2 ENVELOPE POLYPROTEIN PRECURSOR FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2) 60-122 609-689 714-755 PENV_FLVC6 ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA PROVIRUS (CLONE CFE-6) 497-549 561-595 PENV_FLVGL ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1) 478-530 542-576 PENV_FLVLB ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1) 498-550 562-596 PENV_FLVSA ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA VIRUS (STRAIN SARMA) 475-527 539-573 PENV_FOAMV ENV POLYPROTEIN HUMAN SPUMARETRO VIRUS 1-41 154-205 321-355 563-693 866-903 PENV_FSVGA ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN) 498-550 562-596 PENV_FSVGB ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN GA) 478-530 542-576 PENV_FSVSM ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN SM) 481-524 545-579 PENV_FSVST ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN SNYDER-THEILEN) 498-532 PENV_GALV ENV POLYPROTEIN PRECURSOR GIBBON APE LEUKEMIA VIRUS 523-575 587-621 PENV_HTL1A ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK) 321-383 PENV_HTL1C ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN 316-383 ISOLATE PENV_HTL1M ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (ISOLATE MT-2) 321-383 PENV_HTLV2 ENV POLYPROTEIN PRECURSOR HUMAN T-CELL LEUKEMIA VIRUS TYPE II 317-377 PENV_HV1A2 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE 497-593 612-711 766-845 PENV_HV1B1 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) 505-594 610-712 767-843 PENV_HV1B8 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE) 500-589 605-707 762-838 PENV_HV1BN ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE) 331-365 501-590 609-708 763-831 (CONT PENV_HV1BR ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) 510-599 615-717 772-841 PENV_HV1C4 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE) 342-376 510-606 626-724 779-855 PENV_HV1EL ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (EL1 ISOLATE) 255-296 502-591 607-709 768-829 PENV_HV1H2 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) 505-594 610-712 767-836 PENV_HV1H3 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB3 ISOLATE) 505-594 610-712 767-843 PENV_HV1J3 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 343-377 517-605 622-723 778-843 PENV_HV1JR ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) 329-363 497-586 603-704 759-835 PENV_HV1KB ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN KB-1- 88-122 338-372 511-545 555-599 618-677 681-718 772-848 GP32) PENV_HV1MA ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) 259-300 507-596 617-714 770-825 PENV_HV1MF ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MFA ISOLATE) 503-592 622-710 765-841 PENV_HV1MN ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 336-370 506-595 617-713 774-841 PENV_HV1N5 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 326-360 ISOL PENV_HV1ND ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) 249-290 495-584 601-702 757-825 PENV_HY1OY ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) 336-370 497-593 610-711 766-842 PENV_HV1PV ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) 505-594 610-712 767-843 PENV_HV1RH ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) 344-378 507-603 619-721 776-852 PENV_HV1S1 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162 ISOLATE) 496-585 602-703 758-830 PENV_HV1S3 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF33 ISOLATE) 332-366 494-590 607-708 763-837 PENV_HV1SC ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SC ISOLATE) 331-365 498-594 611-712 767-834 PENV_HV1W1 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ1 ISOLATE) 331-365 498-594 611-712 768-836 PENV_HV1W2 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ2 ISOLATE) 327-361 489-584 602-703 758-827 PENV_HV1Z2 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 255-296 502-591 610-709 764-831 ISOLAT PENV_HV1Z3 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 3 ISOLATE) 251-292 PENV_HV1Z6 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6 ISOLATE) 256-297 504-593 609-711 766-840 PENV_HV1Z8 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z-84 ISOLATE) 266-307 512-601 617-675 682-719 774-831 PENV_HV1ZH ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE HZ321 522-594 612-671 675-712 777-839 ISOLA PENV_HV2BE ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) 447-481 510-595 617-680 PENV_HV2CA ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) 512-597 619-709 PENV_HV2D1 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) 501-586 608-698 PENV_HV2G1 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 439-473 502-587 609-699 GHANA-1) PENV_HV2NZ ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) 488-587 609-699 PENV_HV2RO ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) 511-596 618-708 PENV_HV2S2 ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 442-476 505-590 612-702 ST/24.1C# PENV_HV2SB ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) 526-588 614-700 PENV_HV2ST ENVELOPE POLYPROTEIN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) 442-476 505-590 612-702 PENV_IPMAE ENV POLYPROTEIN PRECURSOR MOUSE INTRACISTERNAL A-PARTICLE 367-422 465-527 PENV_JSRV ENV POLYPROTEIN PRECURSOR SHEEP PULMONARY ADENOMATOSIS VIRUS 403-455 571-605 PENV_MCFF ENV POLYPROTEIN PRECURSOR MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS 473-525 537-571 PENV_MCFF3 ENV POLYPROTEIN PRECURSOR (COAT MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS 474-526 538-572 POLYPROTE (ISOLA PENV_MLVAV ENV POLYPROTEIN PRECURSOR AKV MURINE LEUKEMIA VIRUS 503-555 567-601 PENV_MLVCB ENV POLYPROTEIN PRECURSOR CAS-BR-E MURINE LEUKEMIA VIRUS 498-550 562-596 PENV_MLVF5 ENV POLYPROTEIN PRECURSOR FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57) 520-564 576-610 PENV_MLVFF ENV POLYPROTEIN PRECURSOR FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29) 520-564 576-610 PENV_MLVFP ENV POLYPROTEIN PRECURSOR FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211) 520-564 576-610 PENV_MLVHO ENV POLYPROTEIN PRECURSOR HOMULV MURINE LEUKEMIA VIRUS 504-551 563-597 PENV_MLVKI ENV POLYPROTEIN KIRSTEN MURINE LEUKEMIA VIRUS 40-92 104-138 PENV_MLVMO ENV POLYPROTEIN PRECURSOR MOLONEY MURINE LEUKEMIA VIRUS 502-554 566-600 PENV_MLVRD ENV POLYPROTEIN PRECURSOR RADIATION MURINE LEUKEMIA VIRUS 497-549 561-595 PENV_MLVRK ENV POLYPROTEIN PRECURSOR RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN) 497-549 561-595 PENV_MMTVB ENV POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 477-539 556-612 PENV_MMTVG ENV POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 477-539 556-612 PENV_MPMV ENV POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 408-474 PENV_MSVFB ENV POLYPROTEIN FBJ MURINE OSTEOSARCOMA VIRUS 43-95 107-141 PENV_OMVVS ENV POLYPROTEIN PRECURSOR OVINE LENTIVIRUS (STRAIN SA-OMVV) 22-64 185-223 664-746 780-816 PENV_RMCFV ENV POLYPROTEIN PRECURSOR RAUSCHER MINK CELL FOCUS-INDUCING VIRUS 484-528 540-574 PENV_RSFFV ENV POLYPROTEIN PRECURSOR RAUSCHER SPLEEN FOCUS-FORMING VIRUS 342-376 PENV_SFV1 ENV POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1) 1-41 101-140 154-205 321-355 563-651 658-693 866-904 PENV_SFV3L ENV POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 5-46 158-209 319-357 560-706 863-901 PENV_SIVAI ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 269-310 551-623 643-693 PENV_SIVAG ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 556-628 651-699 808-852 PENV_SIVAI ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 257-291 336-370 535-607 627-684 792-840 PENV_SIVAT ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 264-298 549-621 644-692 796-833 PENV_SIVCZ ENVELOPE POLYPROTEIN GP160 PRECURSOR CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) 253-291 330-365 512-584 669-703 803-837 PENV_SIVGB ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 566-654 677-725 PENV_SIVM1 ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) 114-151 465-506 528-613 635-725 809-864 PENV_SIVM2 ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (MM251 ISOLATE) 71-109 161-219 245-286 PENV_SIVMK ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 464-505 540-612 638-724 PENV_SIVML ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE) 464-505 540-612 638-724 PENV_SIVS4 ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMM4 ISOLATE) 466-509 517-616 638-728 812-853 PENV_SIVSP ENVELOPE POLYPROTEIN GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) 470-513 521-620 642-732 811-848 PENV_SMRVH ENV POLYPROTEIN PRECURSOR SQUIRREL MONKEY RETROVIRUS (SMRV-H) 400-466 PENV_SRV1 ENV POLYPROTEIN SIMIAN RETROVIRUS SRV-1 409-475 PENV_VILV ENV POLYPROTEIN PRECURSOR VISNA LENTIVIRUS (STRAIN 1514) 21-62 184-222 637-740 773-809 PENV_VILV1 ENV POLYPROTEIN PRECURSOR VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1K2S1) 21-62 184-222 643-746 780-816 PENV_VILV2 ENV POLYPROTEIN PRECURSOR VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2) 21-62 184-222 645-748 782-818 PERBA_AVIER ERBA ONCOGENE PROTEIN AVIAN ERYTHROBLASTOSIS VIRUS (STRAIN ES4) 106-140 PETF1_FOWP1 EARLY TRANSCRIPTION FACTOR 70 KD SUB- FOWLPOX VIRUS (STRAIN FP-1) 190-224 553-587 UNIT PETF1_SFVKA EARLY TRANSCRIPTION FACTOR 70 KD SUB- SHOPE FIBROMA VIRUS (STRAIN KASZA) 37-71 267-340 550-587 UNIT PETF1_VACCC EARLY TRANSCRIPTION FACTOR 70 KD SUB- VACCINIA VIRUS (STRAIN COPENHAGEN) 23-71 307-341 UNIT PETF1_VACCV EARLY TRANSCRIPTION FACTOR 70 KD SUB- VACCINIA VIRUS (STRAIN WR) 23-71 307-341 UNIT PETF2_VACCC EARLY TRANSCRIPTION FACTOR 82 KD SUB- VACCINIA VIRUS (STRAIN COPENHAGEN) 52-97 174-208 UNIT PETF2_VARV EARLY TRANSCRIPTION FACTOR 82 KD SUB- VARIOLA VIRUS 52-97 174-208 UNIT PEXON_HCMVA ALKALINE EXONUCLEASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 80-114 PEXON_HSVEB ALKALINE EXONUCLEASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 89-141 PEXON_PRVN3 ALKALINE EXONUCLEASE PSEUDORABIES VIRUS (STRAIN NIA-3) 82-120 PEXON_VZVD ALKALINE EXONUCLEASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 109-157 342-383 PFIB2_ADE40 41.4 KD FIBER PROTEIN HUMAN ADENOVIRUS TYPE 40 182-237 PFIB2_ADE41 41.4 KD FIBER PROTEIN HUMAN ADENOVIRUS TYPE 41 182-223 PFIBP_ADE03 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 3 156-194 PFIBF_ADE07 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 7 176-210 PFIBP_ADE40 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 40 303-352 PVIBP_ADE41 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 41 320-366 PFIBP_ADEB3 FIBER PROTEIN BOVINE ADENOVIRUS TYPE 3 181-215 585-626 PFOSX_MSVFR V-FOS/FOX TRANSFORMING PROTEIN FBR MURINE OSTEOSARCOMA VIRUS 131-169 PFOS_AVINK P55-V-FOS TRANSFORMING PROTEIN AVIAN RETROVIRUS NK24 109-152 PFOS_MSVFB P55-V-FOS TRANSFORMING PROTEIN FBI MURINE OSTEOSARCOMA VIRUS 155-193 PGAGC_AVISC P47(GAG-CRK) PROTEIN AVIAN SARCOMA VIRUS (STRAIN CT10) 57-101 PGAG_AVEV1 GAG POLYPROTEIN AVIAN ENDOGENOUS VIRUS EV-1 57-94 PGAG_AVEV2 GAG POLYPROTEIN AVIAN ENDOGENOUS ROUS-ASSOCIATED VIRUS-0 6-43 PGAG_AVIMC GAG POLYPROTEIN AVIAN MYELOCYTOMATOSIS VIRUS MC29 57-94 PGAG_AVIMD GAG POLYPROTEIN AVIAN MYELOCYTOMATOSIS VIRUS HBI 57-94 PGAG_AVISU CORE PROTEIN P19 AVIAN SARCOMA VIRUS (STRAIN UR2) 57-94 PGAG_AVISY GAG POLYPROTEIN AVIAN SARCOMA VIRUS (STRAIN Y73) 57-94 PGAG_BIV06 GAG POLYPROTEIN (P53) BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) 1-41 PGAG_EIAVY GAG POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 61-118 PGAG_FIVPE GAG POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) 76-110 PGAG_FIVSD GAG POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO) 76-110 PGAG_FIVT2 GAG POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2) 76-110 PGAG_FLV GAG POLYPROTEIN FELINE LEUKEMIA VIRUS 496-537 PGAG_FOAMV GAG POLYPROTEIN HUMAN SPUMARETROVIRUS 130-186 391-425 439-480 607-655 PGAG_FSVMD GAG POLYPROTEIN FELINE SARCOMA VIRUS (STRAIN MCDONOUGH) 499-534 PGAG_FUJSV GAG POLYPROTEIN FUJINAMI SARCOMA VIRUS 57-94 PGAG_GALV GAG POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 393-444 PGAG_HV1A2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 87-133 294-328 ISOLATE PGAG_HV1B1 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) 90-131 292-326 PGAG_HV1B5 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) 90-131 292-326 PGAG_HV1BR GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) 90-131 292-326 PGAG_HV1C4 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE) 90-131 292-326 PGAG_HV1EL GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (EL1 ISOLATE) 93-131 292-326 PGAG_HV1H2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) 90-131 292-326 PGAG_HV1J3 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 87-131 292-326 PGAG_HV1JR GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) 87-131 292-326 PGAG_HV1MA GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) 90-137 PGAG_HV1MN GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 87-134 295-329 PGAG_HV1N5 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 90-131 292-326 ISOL PGAG_HV1ND GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) 87-128 289-323 PGAG_HV1OY GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OY1 ISOLATE) 90-131 292-326 PGAG_HV1PV GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) 90-131 292-326 PGAG_HV1RH GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) 90-131 292-326 PGAG_HV1U4 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN 87-127 UGANDAN PGAG_HV1W2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ2 ISOLATE) 292-326 PGAG_HV1Z2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 87-132 293-327 ISOLAT PGAG_HV2SB GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) 292-326 PGAG_IPHA RETROVIRUS-RELATED GAG POLYPROTEIN HAMSTER INTRACISTERNAL A-PARTICLE 93-127 320-357 PGAG_IPMA RETROVIRUS-RELATED GAG POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 67-103 PGAG_IPMAE RETROVIRUS-RELATED GAG POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 89-133 138-172 PGAG_JSRV GAG POLYPROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 470-504 PGAG_MMTVB GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 83-151 156-190 PGAG_MMTVG GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 83-151 156-190 PGAG_MPMV GAG POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 222-260 PGAG_RSVP GAG POLYPROTEIN ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 57-94 PGAG_SCVLA MAJOR COAT PROTEIN SACCHAROMYCES CEREVISIAE VIRUS L-A (SCV-L-A) 102-139 490-531 PGAG_SFV1 GAG POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1) 128-177 378-416 583-634 PGAG_SFV3L GAG POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 373-407 435-522 591-632 PGAG_SIVAI GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 302-336 PGAG_SIVAG GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 306-340 PGAG_SIVAI GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 183-217 473-507 PGAG_SIVAT GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 302-336 PGAG_SIVCZ GAG POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) 301-335 PGAG_SIVGB GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 163-204 223-267 283-317 PGAG_SMSAV GAG POLYPROTEIN SIMIAN SARCOMA VIRUS 394-431 PGAG_HSV11 PROBABLE HELICASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 172-206 769-820 PHEL1_HSV2H PROBABLE HELICASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 468-502 670-721 PHEL1_HSVSA PROBABLE HELICASE HERPES VIRUS SAIMIRI (STRAIN 11) 158-203 413-449 599-633 PHEL1_VZVD PROBABLE HELICASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 445-517 782-821 PHEMA_CVBF HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN F15) 208-242 PHEMA_CVBLY HEMAGGLUTININ-ESTERASE PRECURSOR HUMAN CORONAVIRUS (STRAIN LY-138) 208-242 PHEMA_CVBM HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN MEBUS) 208-242 PHEMA_CVBQ HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN QUEBEC), 208-242 PHEMA_CVHOC HEMAGGLUTININ-ESTERASE PRECURSOR HUMAN CORONAVIRUS (STRAIN OC43) 208-242 PHEMA_IAAIC HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/AICHI/2/68) 380-456 PHEMA_IABAN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79) 364-440 PHEMA_IABUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/BUDGER/GAR/HOKKAIDO/1/77) 378-454 PHEMA_IACKA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/ALABAMA/1/75) 378-454 PHEMA_IACKG HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 108-142 375-475 494-528 PHEMA_IACKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1/83) 360-452 487-532 PHEMA_IACKQ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1370/ 360-452 487-532 PHEMA_IACKS HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/SCOTLAND/59) 377-469 504-549 PHEMA_IACKV HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/VICTORIA/1/85) 112-146 377-469 PHEMA_IADA1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76) 378-454 PHEMA_IADA2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 377-476 495-547 PHEMA_IADA3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/78/76) 380-453 PHEMA_IADA4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/35/76) 379-478 506-548 PHEMA_IADCZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/CZECHOSLOVAKIA/56) 378-454 PHEMA_IADE1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 21-55 377-472 PHEMA_IADH1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/5/77) 364-440 PHEMA_IADH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 364-440 PHEMA_IADH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/33/80) 364-440 PHEMA_IADH4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/7/82) 364-440 PHEMA_IADH5 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/21/82) 364-440 PHEMA_IADH6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/9/85) 364-440 PHEMA_IADH7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/10/85) 364-440 PHEMA_IADIR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/IRELAND/113/83) 379-471 506-551 PHEMA_IADM1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/546/76 21-55 PHEMA_IADM2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74) 380-456 PHEMA_IADNY HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/NEW YORK/12/78) 21-55 PHEMA_INDNZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/NEW ZEALAND/31/76) 378-454 PHEMA_IADU1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/60) 21-55 PHEMA_IADU3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 380-456 PHEMA_IAEN7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77 380-456 PHEMA_IAFPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 377-477 VIRUS/ROSTOCK PHEMA_IAGRE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GREY TEAL/AUSTRALIA/2/79) 378-454 PHEMA_IAGU2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 378-473 PHEMA_IAGUA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84) 377-476 PHEMA_IAHAL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ALGIERS/72) 379-455 PHEMA_IAHC6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/63) 112-146 360-484 503-537 PHEMA_IAHC7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/73) 112-146 360-484 503-537 PHEMA_IAHCD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQIOMEC DETRPOT164) 360-484 503-537 PHEMA_IAHDE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/DETROIT/1/64) 360-484 503-537 PHEMA_IAHFO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/FONTAINEBLEAU/76) 379-455 PHEMA_IAHK6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/86) 379-455 PHEMA_IAHK7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/87) 379-455 PHEMA_IAHLE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/LEXINGTON/1/66) 112-145 360-484 503-537 PHEMA_IAHLO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 112-146 360-484 503-537 PHEMA_IAHMI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63 379-455 PHEMA_IAHNM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW MARKET/76) 379-455 PHEMA_IAHNN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW MARKET/1/77) 112-146 360-484 503-537 PHEMA_IAHPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 112-146 360-484 503-537 PHEMA_IAHRO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ROMANIA/80) 379-455 PHEMA_IAHSA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SANTIAGO/1/85) 379-455 PHEMA_IAHSP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SAO PAULO/1/76) 132-146 360-484 501-537 PHEMA_IAHSW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SWITZERLAND/137/72) 112-146 360-484 503-537 PHEMA_IAHTE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 379-455 PHEMA_IAHTO HEMAGGLUTININ PRECURSOR INFLUENZA VIRUS (STRAIN A/EQUINE/TOYO/71) 379-455 PHEMA_IAHUR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/URUGUAY/1/63) 379-455 PHEMA_IAJAP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57 375-467 502-547 PHEMA_IAKIE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 376-478 506-541 PHEMA_IALEN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 376-478 506-548 PHEMA_IAMAA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/ASTRAKHAN/244/82) 377-453 PHEMA_IAMAB HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/ASTRAKHAN/263/82) 382-458 PHEMA_IAMAO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78) 380-456 PHEMA_IAME1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71) 380-456 PHEMA_IAME2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/102/72) 380-456 PHEMA_IAME6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86) 364-440 PHEMA_IAMIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 108-142 375-475 PHEMA_IANT6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/NT/60/68) 380-456 PHEMA_IAPIL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/PILOT WHALE/MAIN/328/84) 378-477 496-534 PHEMA_IAPUE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 376-478 506-548 PHEMA_IARUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 378-454 JERSE PHEMA_IASE2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/133/82) 378-354 PHEMA_IASH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SHEARWATER/AUSTRALIA/72) 379-474 506-552 PHEMA_IASTA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/STARLING/VICTORIA/5156/85) 112-146 377-469 PHEMA_IATKI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/IRELAND/1378/83) 379-471 506-551 PHEMA_IATKM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80 378-454 PHEMA_IATKO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/7732/66) 392-470 504-548 PHEMA_IATKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/6118/68) 378-454 493-540 PHEMA_IATKR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 30-64 374-474 PHEMA_IATKW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/WISCONSIN/1/66) 373-472 487-539 PHEMA_IATRA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75) 21-55 PHEMA_IAUDO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 387-456 PHEMA_IAUSS HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/USSR/90/77 376-478 506-548 PHEMA_IAVI7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 381-457 PHEMA_IAWIL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 375-477 505-547 PHEMA_IAZCO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/COLORADO/1/77) 380-456 PHEMA_IAZH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78) 364-440 PHEMA_IAZH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 364-440 PHEMA_IAZIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/INDIANA/1726/88) 379-478 506-548 PHEMA_IAZNJ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/NEW JERSEY/11/76) 379-478 506-547 PHEMA_IAZUK HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/UKKEL/1/84 380-456 PHEMA_INBBE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87 388-473 PHEMA_INBBO HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BONN/43) 378-463 PHEMA_INBEN HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82) 385-471 PHEMA_INBHK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73) 381-463 PHEMA_INBLE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/LEE/40) 387-472 PHEMA_INBMD HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 377-462 PHEMA_INBME HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86) 381-468 PHEMA_INBOR HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/OREGON/5/80) 386-471 PHEMA_INBSI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 386-471 PHEMA_INBUS HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/USSR/100/83) 379-464 PHEMA_INBVI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85) 381-466 PHEMA_INBVK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87) 388-473 PHEMA_INCCA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 483-571 PHEMA_INCEN HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83) 471-559 PHEMA_INCGL HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54) 471-559 PHEMA_INCHY HEMAGGLUTININ INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83) 470-558 PHEMA_INCJH HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66) 484-572 PHEMA_INCKY HEMAGGLUTININ INFLUENZA C VIRUS (STRAIN C/KYOTO/41/82) 470-558 PHEMA_INCMI HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80) 470-558 PHEMA_INCNA HEMAGGLUTININ INFLUENZA C VIRUS (STRAIN C/NARA/82) 470-558 PHEMA_INCP1 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81) 471-559 PHEMA_INCP2 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81) 471-559 PHEMA_INCP3 MEASLES VIRUS (STRAIN HALLE) INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82) 471-559 PHEMA_INCTA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47 471-559 PHEMA_INCYA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81) 471-559 PHEMA_MEASE HEMAGGLUTININ-NEURAMINIDASE MEASLES VIRUS (STRAIN EDMONSTON) 46-90 PHEMA_MEASH HEMAGGLUTININ-NEURAMINIDASE MEASLES VIRUS (STRAIN HALLE) 46-90 PHEMA_MEASI HEMAGGLUTININ-NEURAMINIDASE MEASLES VIRUS (STRAIN IP-3-CA) 46-87 PHEMA_MEASY HEMAGGLUTININ-NEURAMINIDASE MEASLES VIRUS (STRAIN YAMAGATA-1) 46-87 PHEMA_MUMP1 HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN SBL-1 34-99 PHEMA_MUMPM HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 34-99 PHEMA_NUMPR HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN RW) 34-99 PHEMA_MUMPS HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN SBL) 34-99 PHEMA_NDVA HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 8-52 477-529 VICTORIA/32) PHEMA_NDVB HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 1-49 PHEMA_NDVD HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN D26/76) 1-52 PHEMA_NDVM HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51) 1-52 PHEMA_NDVQ HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66) 1-32 PHEMA_NDVTG HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48) 1-49 PHEMA_NDVU HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67) 1-52 PHEMA_PHODV HEMAGGLUTININ-NEURAMINIDASE PHOCINE DISTEMPER VIRUS 39-73 PHEMA_P11HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 1 VIRUS (STRAIN WASHINGTON/1957) 66-110 PHEMA_PI2H HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 2 VIRUS 247-281 PHEMA_PI2HT HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 247-281 PHEMA_PI3B HEMAGGLUTININ-NEURAMINIDASE BOVINE PARAINFLUENZA 3 VIRUS 38-93 PHEMA_PI3H4 HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 13-110 394-428 PHEMA_PI3HA HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN AUS/124854/74) 20-110 394-428 PHEMA_PI3HT HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/545/80) 13-110 394-423 PHEMA_PI3HU HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/9305/52) 13-110 394-428 PHEMA_PI3HV HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/12677/53) 13-110 394-428 PHEMA_PI3HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/641/79) 13-110 394-428 PHEMA_PI3HX HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/1511/73) 13-110 394-428 PHEMA_PI4HA HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 54-88 PHEMA_RACVI HEMAGGLUTININ PRECURSOR RACCOON POXVIRUS 166-214 256-290 PHEMA_RINDK HEMAGGLUTININ-NEURAMINIDASE RINDERPEST VIRUS (STRAIN KABETE O) 46-87 PHEMA_RINDL HEMAGGLUTININ-NEURAMINIDASE RINDERPEST VIRUS (STRAIN L) 46-87 191-225 PHEMA_SEND5 HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 57-110 PHEMA_SENDF HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN FUSHIMI) 57-110 PHEMA_SENDH HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN HARRIS) 57-110 PHEMA_SENDJ HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN HVJ) 57-110 PHEMA_SENDZ HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN Z) 57-110 PHEMA_SV41 HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 41 18-52 387-421 PHEMA_SV5 HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 5 (STRAIN W3) 27-82 PHEMA_SV5LN HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 5 (ISOLATE HUMAN/LN) 27-82 PHEMA_VARV HEMAGGLUTININ PRECURSOR VARIOLA VIRUS 177-211 PHEX3_ADE02 PERIPENTONAL HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 2 90-134 PHEX3_ADE05 PERIPENTONAL HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 5 90-134 PHEX9_ADE02 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 2 85-134 PHEX9_ADE05 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 5 85-134 PHEX9_ADE07 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 7, AND HUMAN ADENOVIRUS 93-138 TYPE PHEX9_ADE12 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 12 88-137 PHEX9_ADE41 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 41 67-126 PHEX9_ADEC2 HEXON-ASSOCIATED PROTEIN CANINE ADENOVIRUS TYPE 2 53-103 PHEX9_ADENT HEXON-ASSOCIATED PROTEIN TUPAIA ADENOVIRUS 61-109 PHEX_ADE02 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 2 341-386 433-467 583-624 PHEXA_ADE05 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 5 330-379 PHEX_ADE40 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 40 303-352 401-449 553-587 PHEX_ADE41 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 41 306-355 555-589 PHEX_ADEB3 HEXON PROTEIN BOVINE ADENOVIRUS TYPE 3 301-346 385-419 544-578 705-739 PHRG_COWPX HOST RANGE PROTEIN COWPOX VIRUS 320-395 455-489 PI226_ASFB7 LATE PROTEIN I226R AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 110-151 PIBMP_CAMV4 INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D4) 3-44 378-419 PIBMP_CAMVB INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BARI 1) 379-420 PIBMP_CAMVC INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 3-37 378-419 PIBMP_CAMVD INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 3-44 378-419 PIBMP_CAMVE INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BDC) 3-37 378-419 PIBMP_CAMVJ INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN S-JAPAN) 3-37 378-419 PIBMP_CAMVN INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 3-37 378-419 PIBMP_CAMVP INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) 3-37 374-419 PIBMP_CAMVS INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 3-37 378-419 PIBMP_CERV INCLUSION BODY MATRIX PROTEIN CARNATION ETCHED RING VIRUS 3-37 PIBMP_FMVD INCLUSION BODY MATRIX PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 1-51 372-406 PIBMP_SOCMV INCLUSION BODY MATRIX PROTEIN 1-48 132-179 PIC18_HCMVA PROBABLE PROCESSING AND TRANSPORT HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 53-98 290-324 498-532 PROTEIN PIC18_HSV11 PROCESSING AND TRANSPORT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 331-365 PIC18_HSV1A PROCESSING AND TRANSPORT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI) 331-365 PIC18_HSV1F PROCESSING AND TRANSPORT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 324-362 PIC18_HSVB2 PROBABLE PROCESSING AND TRANSPORT BOVINE HERPES VIRUS TYPE 2 (STRAIN BMV) 466-500 PROTEIN PIC18_HSVEB PROBABLE PROCESSING AND TRANSPORT HERPES VIRUS TYPE 1 (ISOLATE HVS25A) 341-375 PROTEIN PIC18_HSVSA PROBABLE PROCESSING AND TRANSPORT HERPES VIRUS SAIMIRI (STRAIN 11) 58-99 361-395 PROTEIN PIC18_MCMVS PROBABLE PROCESSING AND TRANSPORT MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 60-112 290-340 647-691 PROTEIN PIC18_PRVIF PROBABLE PROCESSING AND TRANSPORT PSEUDORABIES VIRUS (STRAIN INDIANA-FUNKHAUSER/BECKE 299-333 303-337 PROTEIN PICP0_HSVBJ TRANS-ACTING TRANSCRIPTIONAL PROTEIN BOVINE HERPES VIRUS TYPE 1 (STRAIN JURA) 190-224 ICP0 PICP0_HSVBK TRANS-ACTING TRANSCRIPTIONAL PROTEIN BOVINE HERPES VIRUS TYPE 1 (STRAIN K22) 190-224 ICP0 PICP4_HSVMG TRANS-ACTING TRANSCRIPTIONAL MAREK'S DISEASE HERPES VIRUS (STRAIN GA) 1022- ACTIVATOR PR 1056 PICP4_VZVD TRANS-ACTING TRANSCRIPTIONAL PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 920-954 ICP4 PIE63_HCMVA TRANSCRIPTIONAL REGULATOR IE63 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 207-241 HOMOLOG PIE63_HSV11 TRANSCRIPTIONAL REGULATOR IE63 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 241-275 PIE63_HSVEB TRANSCRIPTIONAL REGULATOR IE63 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 282-316 HOMOLOG PIE63_VZVD TRANSCRIPTIONAL REGULATOR IE63 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 195-229 258-306 HOMOLOG PIE68_HSVE4 IMMEDIATE-EARLY PROTEIN IE68 EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 87-121 PIE68_HSVEB IMMEDIATE-EARLY PROTEIN IE68 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 99-133 PIE68_HSVSA IMMEDIATE-EARLY PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 48-85 PIR05_HCMVA HYPOTHETICAL PROTEIN IRL5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 13-47 PIR12_HCMVA HYPOTHETICAL PROTEIN ORL12 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 74-162 PKABL_FSVHY TYROSINE-PROTEIN KINASE TRANSFORMING FELINE SARCOMA VIRUS (STRAIN HARDY-ZUCKERMAN 2) 280-314 PROT PKABL_MLVAB TYROSINE-PROTEIN KINASE TRANSFORMING ABELSON MURINE LEUKEMIA VIRUS 217-251 PROT PKAKT_MLVAT AKT KINASE TRANSFORMING PROTEIN AKT8 MURINE LEUKEMIA VIRUS 172-227 263-304 PKFES_FSVGA TYROSINE-PROTEIN KINASE TRANSFORMING FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN) 23-64 104-178 PROT PKFGR_FSVGR TYROSINE-PROTEIN KINASE TRANSFORMING FELINE SARCOMA VIRUS (STRAIN GARDNER-RASHEED) 218-252 PROT PKFMS_FSVMD FMS TYROSINE KINASE TRANSFORMING FELINE SARCOMA VIRUS (STRAIN MCDONOUGH) 313-362 638-679 812-849 PROTEIN PKFPS_AVISP TYROSINE-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN PRCII) 65-69 PROT PKFPS_FUJSV TYROSINE-PROTEIN KINASE TRANSFORMING FUJINAMI SARCOMA VIRUS 65-99 152-251 348-398 PROT PKITH_AMEPV THYMIDINE KINASE AMSACTA MOOREI ENTOMOPOXVIRUS 47-81 PKITH_CAPVK THYMIDINE KINASE CAPRIPOXVIRUS (STRAIN KS-1 38-82 PKITH_EBV THYMIDINE KINASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 228-262 431-472 PKITH_HSV11 THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 11) 90-124 PKITH_HSV1C THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN CL101) 90-124 PKITH_HSV1E THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM) 90-124 PKITH_HSV1K THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 90-124 PKITH_HSV1S THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16) 90-124 PKITH_HSV23 THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 91-125 PKITH_HSVBM THYMIDINE KINASE BOVINE HERPES VIRUS TYPE 3 (STRAIN WC11) 616-665 PKITH_HSVE4 THYMIDINE KINASE EQUINE HERPES VIRUS TYPE 4 (STRAIN 1942) 19-53 178-219 PKITH_HSVEB THYMIDINE KINASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 19-53 178-230 PKITH_HSVF THYMIDINE KINASE FELINE HERPESVIRUS (FELID HERPESVIRUS 1) 180-214 PKITH_HSVMR THYMIDINE KINASE MARMOSET HERPESVIRUS 52-86 PKITH_HSVSA THYMIDINE KINASE HERPESVIRUS SAIMIRI (STRAIN 11) 337-389 PKITH_PRVN3 THYMIDINE KINASE PSEUDORABIES VIRUS (STRAIN NIA-3) 161-202 PKMIL_AVIMH MIL SERINE/THREONINE-PROTEIN KINASE AVIAN RETROVIRUS M112 69-103 TRANSF PKR15_HSV11 GENE 15 PROTEIN KINASE ICTALURID HERPES VIRUS 1 190-224 PRK2_HSV11 PROBABLE SERINE/THREONINE-PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 7) 57-91 281-315 KINASE PKR74_HSV11 GENE 74 PROTEIN KINASE ICTALURID HERPES VIRUS 1 487-528 597-631 PKRAF_MSV36 RAF SERINE/THREONINE-PROTEIN KINASE MURINE SARCOMA VIRUS 3611 11-45 TRANSF PKRB1_VACCC 30 KD PROTEIN KINASE HOMOLOG VACCINIA VIRUS (STRAIN COPENHAGEN) 127-168 PKRB1_VACCV 30 KD PROTEIN KINASE HOMOLOG VACCINIA VIRUS (STRAIN WR) 127-168 PKRB1_VARV 30 KD PROTEIN KINASE HOMOLOG VARIOLA VIRUS 123-171 PKRB2_VACCC POSSIBLE PROTEIN KINASE B12 VACCINIA VIRUS (STRAIN COPENHAGEN) 147-181 PKRB2_VACCV POSSIBLE PROTEIN KINASE B12 VACCINIA VIRUS (STRAIN WR) 147-181 PKRF1_VACCC POSSIBLE PROTEIN KINASE F10 VACCINIA VIRUS (STRAIN COPENHAGEN) 169-203 PKRF1_VACCP POSSIBLE PROTEIN KINASE F10 VACCINIA VIRUS (STRAIN L-IVP) 136-170 PKRF1_VARV POSSIBLE PROTEIN KINASE F10 VARIOLA VIRUS 169-203 PKROS_AVISU ROS TYROSINE KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN UR2) 111-145 PROTEIN PKRYK_AVIR3 TYROSINE-PROTEIN KINASE TRANSFORMING AVIAN RETROVIRUS RPL30 15-66 PROT PKTHY_VACCV THYMIDYLATE KINASE VACCINIA VIRUS (STRAIN WR), (STRAIN COPENHAGEN) 135-169 PKYES_AVISY TYROSINE-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN Y73) 174-233 PROT PL100_ADE02 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 441-475 PL100_ADE05 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 223-264 PL100_ADE40 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 40 191-232 408-442 PL100_ADE41 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 41 199-233 PL52_ADE02 LATE LI 52 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 238-284 301-349 PL52_ADE05 LATE LI 52 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 238-284 301-349 PLMP2_EBV GENE TERMINAL PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 144-179 294-338 PMCEL_SFVKA MRNA CAPPING ENZYME SHOPE FIBROMA VIRUS (STRAIN KASZA) 54-152 622-656 PMCEL_VACCC MRNA CAPPING ENZYME VACCINIA VIRUS (STRAIN COPENHAGEN) 1-41 623-657 PMCEL_VACCV MRNA CAPPING ENZYME VACCINIA VIRUS (STRAIN WR) 1-41 623-657 PMCEL_VARV MRNA CAPPING ENZYME VARIOLA VIRUS 1-39 623-657 PMCES_VACCC MRNA CAPPING ENZYME VACCINIA VIRUS (STRAIN COPENHAGEN) 72-137 245-286 PMCES_VACCV MRNA CAPPING ENZYME VACCINIA VIRUS (STRAIN WR) 72-137 245-286 PMCES_VARV MRNA CAPPING ENZYME VARIOLA VIRUS 72-137 245-286 PMCE_ASFB7 MRNA CAPPING ENZYME AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 116-157 279-313 738-772 PMOVP_ORSV MOVEMENT PROTEIN ODONTOGLOSSUM RINGSPOT VIRUS 53-90 PMOVP_PPMVS MOVEMENT PROTEIN PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) 26-66 PMOVP_TMGMV MOVEMENT PROTEIN TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 29-66 PMOVP_TMVTO MOVEMENT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) 32-66 PMOVP_TOMVA MOVEMENT PROTEIN TOMATO MOSAIC VIRUS (STRAIN LIIA) 32-80 PMOVP_TOMVL MOVEMENT PROTEIN TOMATO MOSAIC VIRUS (STRAIN LII) 32-80 PMTC1_CHVN1 MODIFICATION METHYLASE CVIB1 CHLORELLA VIRUS NC-IA 222-256 PMTC2_CHVP1 MODIFICATION METHYLASE CVIAI1 PARAMECIUM BURSARIA CHLORELLA VIRUS 1 116-164 PMYC_AVIM2 MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS VIRUS CMII 229-266 375-419 PMYC_AVIMC MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS VIRUS MC29 230-267 376-420 PMYC_AVIMD MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS VIRUS HB1 230-267 376-420 PMYC_AVIME MYC TRANSFORMING PROTEIN AVIAN RETROVIRUS MH2E21 377-421 PMYC_AV1OK MYC TRANSFORMING PROTEIN AVIAN RETROVIRUS 0K10 224-261 370-414 PMYC_FLV MYC TRANSFORMING PROTEIN FELINE LEUKEMIA VIRUS 393-437 PMYC_FLVTT MYC TRANSFORMING PROTEIN FELINE LEUKEMIA PROVIRUS FTT 393-437 PNCA2_CVMA5 NUCLEOCAPSID PROTEIN MURINE CORONAVIRUS MHV (STRAIN A59) 12-46 PNCAP_AINOV NUCLEOCAPSID PROTEIN AINO VIRUS 177-211 PNCAP_BEV NUCLEOCAPSID PROTEIN BERNE VIRUS 46-83 122-156 PNCAP_BRSVA NUCLEOCAPSID PROTEIN BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 62-108 163-200 248-303 343-383 PNCAP_BUNGE NUCLEOCAPSID PROTEIN BUNYAVIRUS GERMISTON 176-228 PNCAP_BUNLC NUCLEOCAPSID PROTEIN BUNYAVIRUS LA CROSSE 176-229 PNCAP_BUNSH NUCLEOCAPSID PROTEIN BUNYAVIRUS SNOWSHOE HARE 176-229 PNCAP_BUNYW NUCLEOCAPSID PROTEIN BUNYAMWERA VIRUS 175-228 PNCAP_CCHFV NUCLEOCAPSID PROTEIN CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS (ISOLATE 223-306 427-461 C6803 PNCAP_CDVO NUCLEOCAPSID PROTEIN CANINE DISTEMPER VIRUS (STRAIN ONDERSTERPOORT) 137-174 179-217 354-402 PNCAP_CHAV NUCLEOCAPSID PROTEIN CHANDIPURA VIRUS (STRAIN 1653514) 40-84 321-369 PNCAP_CVBF NUCLEOCAPSID PROTEIN BOVINE CORONAVIRUS (STRAIN F15) 349-383 PNCAP_CVBM NUCLEOCAPSID PROTEIN BOVINE CORONAVIRUS (STRAIN MEBUS) 349-383 PNCAP_CVCAE NUCLEOCAPSID PROTEIN CANINE ENTERIC CORONAVIRUS (STRAIN K378) 165-227 PNCAP_CVHOC NUCLEOCAPSID PROTEIN HUMAN CORONAVIRUS (STRAIN OC43) 349-383 PNCAP_CVMJH NUCLEOCAPSID PROTEIN MURINE CORONAVIRUS MHV (STRAIN JHM) 12-46 PNCAP_CVPFS NUCLEOCAPSID PROTEIN PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 149-206 PNCAP_CVPPU NUCLEOCAPSID PROTEIN PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 165-227 PNCAP_CVPR8 NUCLEOCAPSID PROTEIN PORCINE RESPIRATORY CORONAVIRUS (STRAIN 86/137004/BRIT 149-228 PNCAP_CVPRM NUCLEOCAPSID PROTEIN PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 149-228 PNCAP_CVRSD NUCLEOCAPSID PROTEIN RAT CORONAVIRUS (STRAIN 681) 12-46 PNCAP_CVTKE NUCLEOCAPSID PROTEIN TURKEY ENTERIC CORONAVIRUS 349-383 PNCAP_DUGBV NUCLEOCAPSID PROTEIN DUGBE VIRUS 230-306 PNCAP_FIPV NUCLEOCAPSID PROTEIN FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 151-206 PNCAP_HANTV NUCLEOCAPSID PROTEIN HANTAAN VIRUS (STRAIN 76-118) 1-35 40-74 333-381 PNCAP_HAZVJ NUCLEOCAPSID PROTEIN HAZARA VIRUS (ISOLATE JC280) 233-297 PNCAP_HRSVI NUCLEOCAPSID PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI 62-145 163-200 248-303 343-380 PNCAP_HRSVA NUCLEOCAPSID PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 62-145 163-200 248-303 343-380 PNCAP_IBVG NUCLEOCAPSID PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN GRAY) 186-227 PNCAP_IBVK NUCLEOCAPSID PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 186-220 PNCAP_JUNIN NUCLEOCAPSID PROTEIN JUNIN ARENAVIRUS 96-151 PNCAP_LASSG NUCLEOCAPSID PROTEIN LASSA VIRUS (STRAIN GA391) 65-113 126-174 PNCAP_LASSJ NUCLEOCAPSID PROTEIN LASSA VIRUS (STRAIN JOSIAH) 65-113 122-174 467-504 PNCAP_LDV NUCLEOCAPSID PROTEIN LACTATE DEHYDROGENASE-ELEVATING VIRUS ( 3-40 PNCAP_LYCVA NUCLEOCAPSID PROTEIN LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN 45-117 460-497 ARMSTRON PNCAP_LYCVW NUCLEOCAPSID PROTEIN LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE) 45-79 83-117 PNCAP_MAGV NUCLEOCAPSID PROTEIN MAGUARI VIRUS 175-228 PNCAP_MEASE NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN EDMONSTON) 188-226 363-411 PNCAP_MEASH NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN HALLE) 181-226 363-411 PNCAP_MEASI NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN IP-3-CA) 188-226 363-411 PNCAP_MEASY NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN YAMAGATA-1) 188-226 363-411 PNCAP_MOPEI NUCLEOCAPSID PROTEIN MOPEIA VIRUS 65-106 471-505 PNCAP_MUMP1 NUCLEOCAPSID PROTEIN MUMPS VIRUS (STRAIN SBL-1) 214-255 500-534 PNCAP_MUMPM NUCLEOCAPSID PROTEIN MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 214-255 PNCAP_PHV NUCLEOCAPSID PROTEIN PROSPECT HILL VIRUS 1-35 40-74 337-392 PNCAP_PI1HC NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 212-272 441-510 PNCAP_PI1HW NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN WASHINGTON/1957) 212-272 441-510 PNCAP_PI2HT NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 214-266 344-378 PNCAP_PI3B NUCLEOCAPSID PROTEIN BOVINE PARAINFLUENZA 3 VIRUS 200-403 446-490 PNCAP_PI3H4 NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 87-135 207-266 344-490 440-491 PNCAP_PI4HA NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 58-94 191-267 PNCAP_PI4HB NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA AB VIRUS (STRAIN 68-333) 58-94 191-267 PNCAP_PIARV NUCLEOCAPSID PROTEIN PICHINDE ARENAVIRUS 65-112 PNCAP_PIRYV NUCLEOCAPSID PROTEIN PIRY VIRUS 71-116 325-359 PNCAP_PUUMH NUCLEOCAPSID PROTEIN PUUMALA VIRUS (STRAIN HALLNAS B1) 1-35 40-75 337-392 PNCAP_PUUMS NUCLEOCAPSID PROTEIN PUUMALA VIRUS (STRAIN SOTKAMO) 1-35 40-75 337-385 PNCAP_PVM NUCLEOCAPSID PROTEIN PNEUMONIA VIRUS OF MICE 93-141 248-303 344-388 PNCAP_RABVA NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN AVO1) 133-167 PNCAP_SEND5 NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 212-272 345-404 PNCAP_SENDE NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN ENDERS) 212-272 345-404 PNCAP_SENDZ NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN Z) 212-272 345-408 PNCAP_SEOUS NUCLEOCAPSID PROTEIN SEOUL VIRUS (STRAIN SR-11) 1-35 40-74 333-381 PNCAP_SV41 NUCLEOCAPSID PROTEIN SIMIAN VIRUS 41 215-267 372-406 418-466 PNCAP_SYNV NUCLEOCAPSID PROTEIN SONCHUS YELLOW NET VIRUS 332-366 PNCAP_TACV NUCLEOCAPSID PROTEIN TACARIBE VIRUS 50-84 230-264 PNCAP_TOSV NUCLEOCAPSID PROTEIN TOSCANA VIRUS 215-249 PNCAP_TSWVB NUCLEOCAPSID PROTEIN TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNHI/BR 79-120 PNCAP_TSWVH NUCLEOCAPSID PROTEIN TOMATO SPOTTED WILT VIRUS (HAWAIIAN ISOLATE) 79-120 PNCAP_TSWVL NUCLEOCAPSID PROTEIN TOMATO SPOTTED WILT VIRUS (STRAIN L3) 79-120 PNCAP_UUK NUCLEOCAPSID PROTEIN UUKUNIEMI VIRUS 51-102 PNCAP_VHSV0 NUCLEOCAPSID PROTEIN VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71) 249-325 PNCAP_VHSVM NUCLEOCAPSID PROTEIN VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN MAKAH) 142-180 249-325 PNCAP_VSVIG NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN G 42-108 PNCAP_VSVJO NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA 67-115 PNCAP_VSVSJ NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 42-115 PNEF_HV2BE NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) 7-48 PNEF_HV2D1 NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) 7-41 PNEF_HV2RO NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) 112-160 PNEF_HV2SB NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) 109-150 PNEF_HV2ST NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) 108-149 PNEF_SIVAI NEGATIVE FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 96-140 PNEF_SIVS4 NEGATIVE FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) 9-43 233-267 PNRAM_IABDA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/BLACK DUCK/AUSTRALIA/702/78 47-81 PNRAM_IACAO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82) 33-74 PNRAM_IACHI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 50-91 PNRAM_IACKQ NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1370/ 349-383 PNRAM_IACKR NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/8125/ 349-383 PNRAM_IADGE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/DUCK/GERMANY/49) 14-48 PNRAM_IAFPW NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/WEYBRID 14-48 194-229 PNRAM_IAHCO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/74 10-47 193-227 PNRAM_IAHKI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/81) 5-44 361-402 PNRAM_IAKIE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 50-91 PNRAM_IALEN NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 50-91 PNRAM_IAMEI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71H- 50-88 A/BELLAMY/42N PNRAM_IARUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 49-91 JERSE PNRAM_IASH2 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/SHEARWATER/AUSTRALIA/72) 10-44 PNRAM_IATKR NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 7-41 PNRAM_IATRA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75) 49-83 PNRAM_IAUSS NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 50-91 PNRAM_IAWHM NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84) 49-91 PNRAM_INBBE NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87) 5-46 348-382 PNRAM_INBHK NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73) 5-46 349-383 PNRAM_INBLE NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/LEE/40) 5-46 349-383 PNRAM_INBLN NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/LENINGRAD/179/86), (STRAIN 5-39 348-382 B/M PNRAM_INBMD NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 5-39 349-383 PNRAM_INBMF NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/MEMPHIS/3/89) 5-46 348-382 PNRAM_INBOR NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/OREGON/5/80) 5-46 349-383 PNRAM_INBSI NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 5-39 349-383 PNRAM_INBUS NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/USSR/100/83) 5-39 349-383 PNRAM_INBVI NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85 5-39 348-382 PNS2_SIDEV PROBABLE STRUCTURAL PROTEIN BOMBYX DENSONUCLEOSIS VIRUS 790-828 PRECURSOR PNSS_INSVN NON-STRUCTURAL PROTEIN IMPATIENS NECROTIC SPOT VIRUS (STRAIN NL-07) 95-129 204-238 PNSS_TSWVB NON-STRUCTURAL PROTEIN TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNHI/BR 3-37 PNSS_TSWVL NON-STRUCTURAL PROTEIN TOMATO SPOTTED WILT VIRUS (STRAIN L3) 3-37 PNTP1_AMEPV NUCLEOSIDE TRIPHOSPHATASE 1 AMSACTA MOOREI ENTOMOPOXVIRUS 28-69 110-144 PNTP1_CBEPV NUCLEOSIDE TRIPHOSPHATASE 1 CHORISTONEURA BIENNIS ENTOMOPOXVIRUS 122-169 415-449 514-555 PNTP1_VACCC NUCLEOSIDE TRIPHOSPHATASE 1 VACCINIA VIRUS (STRAIN COPENHAGEN) 56-90 248-289 549-599 PNTP1_VACCV NUCLEOSIDE TRIPHOSPHATASE 1 VACCINIA VIRUS (STRAIN WR) 56-90 248-289 549-599 PNTP1_VARV NUCLEOSIDE TRIPHOSPHATASE 1 VARIOLA VIRUS 154-195 455-505 PP100_HSV6U MAJOR ANTIGENIC STRUCTURAL PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 189-223 689-735 PPAP1_VACCC POLY(A) POLYMERASE CATALYTIC SUBUNIT VACCINIA VIRUS (STRAIN COPENHAGEN) 121-180 PPAP1_VACCV POLY(A) POLYMERASE CATALYTIC SUBUNIT VACCINIA VIRUS (STRAIN WR) 121-180 PPAP1_VARV POLY(A) POLYMERASE CATALYTIC SUBUNIT VARIOLA VIRUS 121-180 PPAP2_CAPVK POLY(A) POLYMERASE REGULATORY SUBUNIT CAPRIPOXVIRUS (STRAIN KS-1) 112-146 PPAP2_FOWPV POLY(A) POLYMERASE REGULATORY SUBUNIT FOWLPOX VIRUS 95-154 PPAP2_VACCC POLY(A) POLYMERASE REGULATORY SUBUNIT VACCINIA VIRUS (STRAIN COPENHAGEN) 203-249 PPAP2_VACCV POLY(A) POLYMERASE REGULATORY SUBUNIT VACCINIA VIRUS (STRAIN WR) 203-249 PPAP2_VARV POLY(A) POLYMERASE REGULATORY SUBUNIT VARIOLA VIRUS 203-249 PPE12_NPVAC 12.1 KD PROTEIN IN PE 5′REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 15-56 60-105 PPE12_NPVOP 11.5 KD PROTEIN IN P26 5′REGION ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 11-98 VIRUS PPE38_NPVAC MAJOR IMMEDIATE EARLY PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 19-77 197-249 PPE38_NPVOP MAJOR IMMEDIATE EARLY PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 190-240 VIRUS PPE48_NPVAC 48.3 KD PROTEIN IN PE-P26 INTERGENIC AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 4-42 48-89 97-131 REGION PPE48_NPVOP 47.3 KD PROTEIN IN PE-P26 INTERGENIC ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 47-82 165-199 REGION VIRUS PPIV2_ADE07 MATURATION PROTEIN HUMAN ADENOVIRUS TYPE 7 414-448 PPIV6_ADE02 PROTEIN VI PRECURSOR HUMAN ADENOVIRUS TYPE 2 31-71 PPIV6_ADE05 PROTEIN VI PRECURSOR HUMAN ADENOVIRUS TYPE 5 37-71 PPOL1_BAYMG GENOME POLYPROTEIN 1 BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) 329-363 743-777 957-991 1265- 2229- 2309- 2368- 1299 2266 2352 2404 PPOL1_BAYMJ GENOME POLYPROTEIN 1 BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN 11-1) 329-363 671-705 743-777 957-994 1265- 2227- 2307- 2366- 1299 2264 2305 2402 PPOL1_GCMV RNA1 POLYPROTEIN HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS 120-161 165-216 230-273 377-415 PPOL1_GFLV RNA1 POLYPROTEIN GRAPEVINE FANLEAF VIRUS 170-212 480-519 636-677 691-725 1157- 1378- 1906- 1196 1412 1943 PPOL1_TBRVS RNA1 POLYPROTEIN TOMATO BLACK RING VIRUS (STRAIN S) 223-270 929-977 PPOL1_TRSVR RNA1 POLYPROTEIN TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY) 161-206 PPOL2_BAYMG GENOME POLYPROTEIN 2 BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) 240-281 669-732 739-773 787-828 PPOL2_BAYMJ GENEOME POLYPROTEIN 2 BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1) 669-732 739-773 787-828 PPOL2_GFLV RNA2 POLYPROTEIN GRAPEVINE FANLEAF VIRUS 365-406 542-602 PPOL2_TBRVS RNA2 POLYPROTEIN TOMATO BLACK RING VIRUS (STRAIN S) 4-38 PPOL2_TRSVR RNA2 POLYPROTEIN TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY) 158-206 334-368 PPOLG_BOVEV GENOME POLYPROTEIN BOVINE ENTEROVIRUS (STRAIN VG-5-27) 849-886 1008- 1382- 1459- 1576- 1064 1416 1507 1617 PPOLG_BVDVN GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL) 244-289 446-491 629-663 1033- 1303- 1392- 1869- 2226- 1074 1344 1443 1910 2260 PPOLG_BVDVS GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1) 245-289 446-491 629-663 1033- 1303- 1392- 1779- 2136- 1074 1344 1443 1820 2170 PPOLG_BYMV GENOME POLYPROTEIN BEAN YELLOW MOSAIC VIRUS 96-130 PPOLG_COXA2 GENOME POLYPROTEIN COXSACKIEVIRUS A21 (STRAIN COE) 9-43 562-596 664-698 1045- 1498- 1607- 1805- 1901- 1100 1546 1648 1839 1946 PPOLG_COXA9 GENOME POLYPROTEIN COXSACKIEVIRUS A9 (STRAIN GRIGGS) 15-49 1040- 1895- 1086 1940 PPOLG_COXB1 GENOME POLYPROTEIN COXSACKIEVIRUS B1 15-49 1021- 1867- 1067 1921 PPOLG_COXB3 GENOME POLYPROTEIN COXSACKIEVIRUS B3 15-49 1024- 1879- 1070 1924 PPOLG_COXB4 GENOME POLYPROTEIN COXSACKIEVIRUS B4 14-59 642-681 1022- 1877- 1068 1922 PPOLG_COXB5 GENOME POLYPROTEIN COXSACKIEVIRUS B5 14-59 1024- 1870- 1070 1924 PPOLG_CYVV GENOME POLYPROTEIN CLOVER YELLOW VEIN VIRUS 120-154 PPOLG_DEN18 GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN 836-1) 74-108 PPOLG_DEN1A GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN AHF 82-80) 74-108 PPOLG_DEN1C GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN CV1636/77) 74-108 PPOLG_DEN1S GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90) 74-108 832-873 960-994 1142- 1386- 1614- 2518- 2946- 1129 1420 1648 2554 3016 PPOLG_DEN1W GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN WESTERN PACIFIC) 74-108 833-874 961-995 1143- 1180 PPOLG_DEN21 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M1) 448-492 PPOLG_DEN22 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M2) 448-495 PPOLG_DEN26 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681) 74-108 728-777 961-955 1146- 1246- 1418- 1615- 2517- 1180 1280 1452 1649 2551 PPOLG_DEN27 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 1668-PDK53) 74-108 728-777 961-995 1146- 1246- 1418- 1615- 2485- 1180 1280 1452 1649 2551 PPOLG_DEN2D GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN D2-04) 728-777 PPOLG_DEN2H GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN TH-36) 497-546 PPOLG_DEN2J GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN JAMAICA) 74-108 728-777 961-995 1146- 1246- 1418- 1615- 2517- 1180 1280 1452 1649 2551 PPOLG_DEN2N GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C) 213-247 398-432 PPOLG_DEN2P GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN PR159/S1) 74-108 728-777 832-875 961-995 1146- 1246- 1418- 1615- 1380 1280 1452 1649 PPOLG_DEN2T GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974) 448-497 552-595 681-715 866-900 966- 1205- 1000 1239 PPOLG_DEN2U GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN PUO-218) 614-663 PPOLG_DEN3 GENOME POLYPROTEIN DENGUE VIRUS TYPE 3 830-872 959-993 1385- 2224- 2480- 2704- 2940- 2980- 1419 2258 2521 2738 2978 3014 PPOLG_DEN4 GENOME POLYPROTEIN DENGUE VIRUS TYPE 4 957-993 1380- 2514- 2701- 2941- 2977- 1414 2555 2735 2975 3011 PPOLG_EC11G GENOME POLYPROTEIN ECHOVIRUS 11 (STRAIN GREGORY) 213-259 1079- 1113 PPOLG_EMCV GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS 1074- 1472- 1522- 1665- 1789- 1115 1518 1570 1706 1823 PPOLG_EMCVB GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-B 145-179 1076- 1474- 1524- 1667- NONDIADETO 1117 1520 1572 1708 PPOLG_EMCVD GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-D 145-179 1076- 1474- 1524- 1667- DIABETOGEN 1117 1520 1572 1708 PPOLG_ENMG3 GENOME POLYPROTEIN MENGO ENCEPHALOMYOCARDITIS VIRUS (STRAIN 37A) 145-179 PPOLG_ENMGO GENOME POLYPROTEIN MENGO ENCEPHALOMYOCARDITIS VIRUS 78-112 PPOLG_FMDV1 GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61) 221-255 294-328 578-612 1103- 1493- 2165- 1153 1528 2200 PPOLG_FMDVA GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12) 220-254 293-327 577-611 1103- 1493- 2164- 1164 1528 2199 PPOLG_FMDVO GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAINS O1K AND O1BFS) 221-255 1103- 1493- 2164- 1153 1528 2199 PPOLG_FMDVS GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN C1-SANTA PAU 87-128 693-728 [C-S PPOLG_FMDVT GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN C1) 221-255 283-317 577-611 PPOLG_HCV1 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE 1) 364-398 PPOLG_HCVA GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN ALFORT) 440-493 626-660 695-729 1033- 1190- 1307- 1779- 2136- 1070 1235 1343 1820 2170 2466- 2525- 2667- 3057- 3152- 3406- 2500 2559 2708 3098 3193 3440 PPOLG_HCVB GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN BRESCIA) 440-493 626-660 695-729 1033- 1173- 1779- 2136- 2388- 1070 1235 1820 2170 2436 PPOLG_HCVBK 2466- 2525- 2667- 3057- 3152- 3406- 3521- 2500 2559 2708 3098 3195 3440 3562 PPOLG_HCVE0 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE BK) 357-398 2328- 2365 PPOLG_HCVM GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE EC10) 65-99 PPOLG_HCVH4 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE H) 364-398 PPOLG_HCVH7 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCV-476) 364-398 PPOLG_HCVH8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCT27) 236-270 PPOLG_HCVHK GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCT18) 248-282 PPOLG_HCVJ2 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCV-KF) 357-398 PPOLG_HCVJ5 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J2) 357-398 PPOLG_HCVJ6 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J5) 364-398 PPOLG_HCVJ7 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J6) 364-401 1716- 2082- 1750 2116 PPOLG_HCVJ8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J7) 364-398 PPOLG_HCVJA GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-18) 364-398 1716- 2082- 2468- 2538- 1750 2116 2502 2572 PPOLG_HCVJT GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE JAPANESE) 357-405 2331- 2365 PPOLG_HCVTW GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-JT) 357-391 2331- 2365 PPOLG_HPAV2 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE TAIWAN) 357-398 2328- 2444- 2365 2503 PPOLG_HPAV4 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 24A) 2-43 101-135 203-237 870-904 1021- 1117- 1055 1151 PPOLG_HPAV8 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 43C) 2-43 101-135 203-237 870-904 1021- 1117- 1055 1151 PPOLG_HPAVC GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 18F) 2-43 101-135 203-237 870-904 1021- 1117- 1055 1151 PPOLG_HPAVG GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN CR326) 2-43 101-135 203-237 PPOLG_HPAVH GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN GA76) 80-114 182-216 PPOLG_HPAVL GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN HM-175) 2-43 101-135 203-237 870-904 1021- 1103- 1055 1151 PPOLG_HPAVM GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN LA) 2-43 101-135 203-217 870-904 1021- 1103- 1055 1151 PPOLG_HPAVS GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN MBB) 2-43 101-135 203-237 870-904 1021- 1103- 1055 1158 PPOLG_HPAVT GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27) 6-47 105-139 207-241 849-908 1025- 1115- 1158- 1059 1155 1198 PPOLG_HRV14 GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS (STRAIN CY-145) 2-43 101-135 203-237 PPOLG_HRV1A GENOME POLYPROTEIN HUMAN RHINOVIRUS 14 (HRV-14) 1020- 1393- 1479- 1877- 1054 1427 1513 1920 PPOLG_HRV1B GENOME POLYPROTEIN HUMAN RHINOVIRUS IA (HRV-1A) 362-396 PPOLG_HRV2 GENOME POLYPROTEIN HUMAN RHINOVIRUS 1B (HRV-1B) 387-421 863-904 1133- 1168 PPOLG_HRV89 GENOME POLYPROTEIN HUMAN RHINOVIRUS 2 (HRV-2) 856-897 1126- 1552- 1169 1593 PPOLG_HUEV7 GENOME POLYPROTEIN HUMAN RHINOVIRUS 89 (HRV-89) 1566- 1607 PPOLG_IBDVO GENOME POLYPROTEIN HUMAN ENTERO VIRUS 70 (STRAIN 1670/71) 359-397 876-917 1032- 1403- 1896- 1088 1441 1934 PPOLG_JAEV1 STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN OH) 134-168 250-291 475-524 PPOLG_JAEV5 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14) 74-122 211-256 539-576 980- 1409- 2463- 2739- 2782- 1014 1450 2497 2777 2823 3322- 3387- 3359 3428 PPOLG_JAEVJ GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V)) 74-122 211-256 539-576 980- 1409- 2463- 2739- 2782- 1014 1450 2497 2777 2823 3322- 3387- 3359 3428 PPOLG_JAEVN GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982) 74-128 211-256 539-576 980- 1409- 2463- 2739- 2782- 1014 1450 2497 2777 2823 3322- 3387- 3359 3428 PPOLG_KUNJM GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA) 7-48 138-183 467-504 908-942 1337- 1378 PPOLG_LANVT GENOME POLYPROTEIN KUNJIN VIRUS (STRAIN MRM61C) 74-108 207-251 851-885 2464- 2528- 2740- 3325- 3389- 2498 2579 2778 3559 3423 PPOLG_LANVY GENOME POLYPROTEIN LANGAT VIRUS (STRAIN TP21) 68-102 431-465 952-996 1431- 1932- 2536- 2967- 3003- 1472 1966 2591 3001 3037 3102- 3145 PPOLG_LIV GENOME POLYPROTEIN LANGAT VIRUS (STRAIN YELANTSEV) 68-102 431-465 PPOLG_LIVSB GENOME POLYPROTEIN LOUPING ILL VIRUS (LI) 68-123 231-272 431-465 PPOLG_MCFA GENOME POLYPROTEIN LOUPING ILL VIRUS (STRAIN SB 526) 151-185 PPOLG_MVEV GENOME POLYPROTEIN MOSQUITO CELL FUSING AGENT (CFA FLAVIVIRUS) 80-114 908-942 2049- 2630- 3036- 3290- 2087 2689 3095 3341 PPOLG_OMV GENOME POLYPROTEIN MURRAY VALLEY ENCEPHALITIS VIRUS 67-115 209-253 853-887 979- 1408- 1013 1449 PPOLG_PEMVC GENOME POLYPROTEIN ORNITHOGALUM MOSAIC VIRUS 481-515 946-984 1072- 1106 PPOLG_POLIM GENOME POLYPROTEIN PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE) 55-100 207-248 377-411 704-738 827-862 877-947 1021- 1167- 1055 1201 1488- 1787- 1948- 2202- 2258- 2805- 3003- 1529 1821 1982 2236 2310 2839 3037 PPOLG_POL1S GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 9-43 1046- 1414- 1500- 1806- 1902- 1101 1448 1548 1840 1947 PPOLG_POL2L GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN SABIN) 9-43 899-933 1047- 1415- 1501- 1610- 1808- 1904- 1102 1449 1549 1651 1842 1949 PPOLG_POL2W GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN LANSING) 9-43 897-831 1045- 1413- 1502- 1608- 1806- 1902- 1100 1447 1547 1649 1840 1947 PPOLG_POL32 GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN W-2) 9-43 897-831 1045- 1413- 1502- 1608- 1806- 1902- 1100 1447 1547 1649 1840 1947 PPOLG_POL3L GENOME POLYPROTEIN POLIOVIRUS TYPE 3 (STRAIN 23127) 9-43 896-930 1044- 1412- 1498- 1607- 1805- 1901- 1098 1446 1546 1648 1839 1946 PPOLG_PPVD GENOME POLYPROTEIN PULIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND P3/LEON 9-43 896-930 1044- 1412- 1498- 1607- 1805- 1901- 12A[1]B) 1099 1446 1546 1648 1839 1946 PPOLG_PPVEA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN D) 164-208 441-503 728-769 815-867 921-955 1741- 1782 PPOLG_PPVNA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN EL AMAR) 116-157 784-818 1146- 1197 PPOLG_PPVRA GENOME POLYPROTEIN PLUM POX POTYVIRUS (ISOLATE NAT) 164-208 403-437 440-502 727-768 814-873 920-954 1740- 1781 PPOLG_PRSVH GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN RANKOVIC) 164-208 403-437 440-502 727-768 814-866 920-954 1740- 1781 PPOLG_PRSVP GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA) 68-102 434-468 PPOLG_PRSVW GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1) 325-359 PPOLG_PSBMV GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN W) 325-359 PPOLG_PVYC GENOME POLYPROTEIN PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1) 253-315 355-389 529-589 935-976 984- 1080- 1588- 1808- 1018 1177 1627 1860 1971- 2379- 2712- 2870- 2015 2413 2746 2907 PPOLG_PVYHU GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN C) 131-196 701-735 802-856 PPOLG_PVYN GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN HUNGARIAN) 144-181 701-735 802-863 901-949 1401- 1492- 1728- 1777- 1441 1526 1772 1818 2272- 2306 PPOLG_PVYO GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN N) 140-196 211-245 701-735 802-863 1401- 1492- 1728- 1777- 1441 1526 1772 1818 1929- 1970 PPOLG_PWVSE GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN O) 140-196 211-245 701-735 802-856 PPOLG_PWVTB GENOME POLYPROTEIN PASSIONFRUIT WOODINESS VIRUS (STRAIN SEVERE) 203-237 PPOLG_PYFVI GENOME POLYPROTEIN PASSIONFRUIT WOODINESS VIRUS (STRAIN TIP BRIGHT) 203-237 PPOLG_STEVM GENOME POLYPROTEIN PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121) 194-228 1112- 1379- 1858- 1950- 2703- 1172 1413 1899 1991 2737 PPOLG_SVDVH GENOME POLYPROTEIN ST. LOUIS ENCEPHALITIS VIRUS (STRAIN MS1-7) 106-143 673-707 739-773 975- 1404- 1009 1438 PPOLG_SVDVU GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76) 15-49 1024- 1779- 1890- 1070 1813 1924 PPOLG_TBEVS GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN UKG/27/72) 15-49 1024- 1890- 1070 1924 PPOLG_TBEVW GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN) 68-140 231-272 431-465 1152- 1431- 1929- 2182- 2535- 1192 1472 1966 2216 2590 2965- 3051- 3100- 2999 3092 3143 PPOLG_TEV GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE) 68-140 231-272 431-465 1158- 1431- 1932- 2536- 2967- 1192 1492 1966 2591 3001 3003- 3053- 3102- 3037 3094 3145 PPOLG_TMEVB THEILER'S MURINE ENCEPHALOMYELITIS TOBACCO ETCH VIRUS 73-124 166-222 540-584 770-782 828-925 1148- 1416- 1494- VIRUS (S 1192 1460 1535 1668- 1747- 1792- 2395- 2787- 1702 1781 1826 2434 2822 PPOLG_TMEVD GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN 1306- 1483- 1601- BEAN 1340 1518 1635 PPOLG_TMEVG GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN DA) 1304- 1481- 1599- 1338 1516 1663 PPOLG_TUMV GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN GD 1306- 1483- 1601- VII) 1340 1518 1635 PPOLG_TVMV GENOME POLYPROTEIN TURNIP MOSAIC VIRUS 216-259 314-362 494-528 768-839 1443- 1477 PPOLG_WMV2 GENOME POLYPROTEIN TOBACCO VEIN MOTTLING VIRUS 34-68 408-449 667-704 761-813 851-885 969- 1031- 1643- 1017 1072 1677 1686- 2316- 2701- 2814- 1725 2374 2749 2848 PPOLG_WNV GENOME POLYPROTEIN WATERMELON MOSAIC VIRUS II 68-105 202-236 PPOLG_YEFV1 GENOME POLYPROTEIN WEST NILE VIRUS 74-108 207-251 847-881 973- 1413- 2461- 2525- 2737- 1007 1447 2495 2578 2778 3320- 3385- 3357 3426 PPOLG_YEFV2 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN 17D) 418-452 525-563 728-768 1388- 2231- 2477- 2958- 3097- 1444 2276 2565 2996 3143 PPOLG_YEFV8 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204) 418-452 525-563 728-768 1388- 2231- 2477- 2958- 3097- 1444 2276 2565 2996 3143 PPOLH_POL1M GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN 1899/81) 75-116 418-452 525-563 728-768 PPOLN_EEVVT GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 9-43 1047- 1415- 1501- 1610- 1803- 1904- 1102 1449 1549 1651 1842 1949 PPOLN_FCVC6 NONSTRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN 345-382 898-932 1945- TRINIDAD 1979 PPOLN_FCVF9 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN CFI/68 FIV) 510-544 PPOLN_HEVBU NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN F9) 4-45 369-410 986- 1023- 1020 1061 PPOLN_HEVME NON-STRUCTURAL POLYPROTEIN HEPATITIS B VIRUS (STRAIN BURMA) 338-379 1139- 1177 PPOLN_HEVMY NON-STRUCTURAL POLYPROTEIN HEPATITIS B VIRUS (STRAIN MEXICO) 338-379 PPOLN_HEVPA NON-STRUCTURAL POLYPROTEIN HEPATITIS B VIRUS (STRAIN MYANMAR) 338-379 1139- 1184 PPOLN_MIDDV NON-STRUCTURAL POLYPROTEIN HEPATITIS B VIRUS (STRAIN PAKISTAN) 337-378 1138- 1376 PPOLN_ONNVG NONSTRUCTURAL POLYPROTEIN MIDDELBURG VIRUS 922-977 PPOLN_RHDV NONSTRUCTURAL POLYPROTEIN O'NYONG-NYONG VIRUS (STRAIN GULU) 899-933 1942- 2444- 1986 2502 PPOLN_RRVN NON-STRUCTURAL POLYPROTEIN RABBIT HEMORRHAGIC DISEASE VIRUS 188-234 306-347 409-457 1657- 1716 PPOLN_RRVT NONSTRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN NB 5092) 895-929 1928- 2414- 1962 2467 PPOLN_RUBVT NONSTRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) 597-631 1083- 1136 PPOLN_SFV NONSTRUCTURAL POLYPROTEIN RUBELLA VIRUS (STRAIN THERIEN) 1506- 1551- 1730- 1862- 1540 1585 1767 1896 PPOLN_SINDO NONSTRUCTURAL POLYPROTEIN SEMLIKI FOREST VIRUS 1094- 2358- 1128 2392 PPOLN_SINDV NONSTRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5) 919-971 1491- 1961- 2444- 1525 1996 2478 PPOLR_EPMV NONSTRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAIN HRSP) 1491- 1959- 2442- 1525 1994 2476 PPOLS_EEEV RNA REPLICASE POLYPROTEIN EGGPLANT MOSAIC VIRUS 899-933 1127-1161 PPOLS_EEEV3 STRUCTURAL POLYPROTEIN EASTERN EQUINE ENCEPHALITIS VIRUS 373-406 914-951 PPOLS_EEVV8 STRUCTURAL POLYPROTEIN EASTERN EQUINE ENCEPHALITIS VIRUS (STRAIN VA33[TEN 373-407 915-952 BRO PPOLS_EEVVT STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TC-83) 1216- 1250 PPOLS_IBDV5 STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN 1216- TRINIDAD 1250 PPOLS_IBDVA STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70) 134-168 231-286 470-523 PPOLS_IBDVC STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 134-168 231-286 470-523 AUSTRALI PPOLS_IBDVE STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN CU-1) 134-168 231-286 470-523 PPOLS_IBDVP STRUCTURAL POLYPROTEIN VP4 AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN E) 134-168 231-286 304-340 PPOLS_IBDVS STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN PBG-98) 115-149 212-267 451-504 PPOLS_IPNVJ STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN STC) 134-168 249-283 470-523 PPOLS_IPNVN STRUCTURAL POLYPROTEIN INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE 69-103 723-785 JASPER) PPOLS_ONNVG STRUCTURAL POLYPROTEIN INFECTIOUS PANCREATIC NECROSIS VIRUS (STRAIN N1) 716-786 PPOLS_RRV2 STRUCTURAL POLYPROTEIN O'NYONG-NYONG VIRUS (STRAIN GULU) 1204- 1238 PPOLS_RRVN STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN 213970) 35-69 PPOLS_RRVT STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN NB5092) 369-403 939-973 PPOLS_RUBVH STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) 939-973 PPOLS_RUBVR STRUCTURAL POLYPROTEIN RUBELLA VIRUS (VACCINE STRAIN HPV77) 999- 1036 PPOLS_RUBVT STRUCTURAL POLYPROTEIN RUBELLA VIRUS (VACCINE STRAIN RA27/3) 999- 1036 PPOLS_SINDO STRUCTURAL POLYPROTEIN RUBELLA VIRUS (STRAIN THERIEN) 999- 1036 PPOLS_SINDV STRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5) 362-396 PPOLS_SINDW STRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAINS HRSP AND HRLP) 362-396 PPOLS_WEEV STRUCTURAL POLYPROTEIN SINDBIS VIRUS (WILD TYPE SB DERIVED FROM STRAIN AR339) 34-68 PPOL_BAEVM STRUCTURAL POLYPROTEIN WESTERN EQUINE ENCEPHALITIS VIRUS 913-947 PPOL_BLVAU POL POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 42-80 676-743 794-832 1001- 1042 PPOL_BLVJ POL POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) 625-673 PPOL_CAEVC POL POLYPROTEIN BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) 625-673 PPOL_CAMVD POL POLYPROTEIN CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) 879-934 PPOL_COYMV ENZYMATIC POLYPROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 177-211 PPOL_EIAV9 PUTATIVE POLYPROTEIN COMMELINA YELLOW MOTTLE VIRUS 87-121 333-367 447-498 838-876 896-930 1310- 1351 PPOL_EIAVC POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) 513-566 1022- 1056 PPOL_EIAVY POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 513-566 1022- 1056 PPOL_FENV1 POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) 512-565 1021- 1055 PPOL_FIVPE POL POLYPROTEIN FELINE ENDOGENOUS VIRUS ECE1 533-600 523-659 858-899 PPOL_FIVSD POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) 429-473 606-663 PPOL_FIVT2 POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO) 428-473 606-642 PPOL_FMVD POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2) 428-472 595-662 PPOL_FOAMV ENZYMATIC POLYPROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 403-437 PPOL_GALV POL POLYPROTEIN HUMAN SPUMARETROVIRUS (FOAMY VIRUS) 140-174 217-256 285-326 PPOL_HTL1A POL POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 528-562 673-740 PPOL_HTL1C POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK) 670-711 PPOL_HV1A2 POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN 670-711 ISOLATE) PPOL_HV1B1 POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (ARV2/SF2 ISOLATE 501-537 606-664 PPOL_HV1B5 POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (BH10 ISOLATE) 513-549 639-676 PPOL_HV1BR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) 513-549 618-676 PPOL_HV1EL POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) 513-549 618-676 PPOL_HV1H2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 500-536 626-663 PPOL_HV1JR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) 501-537 605-664 PPOL_HV1MA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) 505-541 610-668 PPOL_HV1MN POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) 476-536 601-663 PPOL_HV1N5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 504-540 609-667 PPOL_HV1ND POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 501-537 627-664 ISOL PPOL_HV1OY POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) 500-536 626-663 PPOL_HV1PV POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) 501-537 606-664 PPOL_HV1RH POL POLYPROTEIN HUMAN IMMUNODEFICCENCY VIRUS TYPE 1 (PV22 ISOLATE) 513-549 693-676 PPOL_HV1U4 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) 500-536 605-663 PPOL_HV1Z2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN 500-536 601-663 UGANDAN PPOL_HV2BE POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 ISOLA 500-536 626-663 PPOL_HV2CA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) 49-83 484-582 653-687 817-851 PPOL_HV2D1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) 356-390 464-562 632-666 PPOL_HV2D2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) 502-600 671-705 PPOL_HV2G1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) 376-410 484-526 529-577 653-687 PPOL_HV2NZ POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE GHANA- 464-562 633-667 1) PPOL_HV2RO POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) 44-78 356-390 464-529 633-667 PPOL_HV2SB POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) 357-391 465-563 634-668 PPOL_HV2ST POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) 46-80 473-562 633-667 PPOL_IPHA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) 484-518 522-577 653-687 PPOL_JSRV PUTATIVE POL POLYPROTEIN HAMSTER INTRACISTERNAL A-PARTICLE 462-503 PPOL_MLVAK POL POLYPROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 190-231 PPOL_MLVAV POL POLYPROTEIN AKR MURINE LEUKEMIA VIRUS 325-392 PPOL_MLVF5 POL POLYPROTEIN AKV MURINE LEUKEMIA VIRUS 677-744 PPOL_MLVFF POL POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57) 682-749 PPOL_MLVFP POL POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29) 682-749 PPOL_MLVMO POL POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211) 682-749 PPOL_MLVRD POL POLYPROTEIN MOLONEY MURINE LEUKEMIA VIRUS 677-744 PPOL_MLVRK POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 677-744 PPOL_MPMV POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN) 62-129 PPOL_OMVVS POL POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 470-504 578-613 PPOL_RSVP POL POLYPROTEIN OVINE LENTIVIRUS (STRAIN SA-OMVV) 470-505 855-910 PPOL_RTBV POL POLYPROTEIN ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 646-684 PPOL_RTBVP POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS 7-44 59-96 101-135 176-236 325-362 433-474 1005- 1405 1039 1439 PPOL_SFV1 POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) 7-44 59-96 101-135 176-236 325-362 433-474 1005- 1405- 1039 1439 PPOL_SFV3L POL POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1) 349-383 427-464 494-535 PPOL_SIVAI POL POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 124-165 429-467 496-530 PPOL_SIVA2 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 351-315 637-678 737-771 938-979 PPOL_SIVAG POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM266 ISOLATE) 45-86 PPOL_SIVAI POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 477-516 642-683 742-783 PPOL_SIVAT POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 175-209 476-515 641-700 942-983 1020- 1054 PPOL_SIVCZ POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 657-691 757-798 PPOL_SIVGB POL POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) 527-561 626-688 PPOL_SIVM1 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 9-57 446-483 629-673 793-827 912-946 PPOL_SIVMK POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) 415-519 654-688 PPOL_SIVS4 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 485-519 654-688 PPOL_SIVSP POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) 448-482 617-651 PPOL_SOCMV POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) 451-485 620-654 PPOL_SRV1 ENZYMATIC POLYPROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 247-295 372-416 PPOL_VILV POL POLYPROTEIN SIMIAN RETROVIRUS SRV-1 470-504 578-613 PPOL_VILV1 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514) 489-524 874-929 PPOL_VILV2 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1) 489-524 874-929 PPP15_HCMVA POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2) 489-524 874-929 PPR73_MMTVB LARGE STRUCTURAL PHOSPHOPROTEIN PP150 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 116-150 187-221 PPR73_MMTVC PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 152-200 PPR73_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H) 20-79 PPR7L_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 61-95 142-201 PPR7R_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 145-204 270-311 PPYHD_CPVBM PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 141-200 266-307 PPYHD_NPVAC POLYHEDRIN PRECURSOR BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS 13-85 PPYHD_NPVAS POLYHEDRIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 13-47 PPYHD_NPVBM POLYHEDRIN AGROTIS SEGETUM NUCLEAR POLYHEDROSIS VIRUS 14-48 PPYHD_NPVBS POLYHEDRIN BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS 12-54 PPYHD_NPVLD POLYHEDRIN BUZURA SUPPRESSARIA NUCLEAR POLYHEDROSIS VIRUS 14-48 PPYHD_NPVMB POLYHEDRIN LYMANTRIA DISPAR MULTICAPSID NUCLEAR POLYHEDROSIS 14-48 V PPYHD_NPVOP POLYHEDRIN MAMESTRA BRASSICAE NUCLEAR POLYHEDROSIS VIRUS 14-48 PPYHD_NPVOS POLYHEDRIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 13-47 VIRUS PPYHD_NPVPF POLYHEDRIN ORGYIA PSEUDOTSUGATA SINGLE CAPSID NUCLEAR POLYHED 14-48 PPYHD_NPVSE POLYHEDRIN PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID POLYHEDROSIS 14-48 PPYHD_NPVSF POLYHEDRIN SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS VIRUS 14-48 (STRAIN PPYHD_NPVSL POLYHEDRIN SPODOPTERA FRUGIPERDA NUCLEAR POLYHEDROSIS VIRUS 14-48 PRASK_MSVKI POLYHEDRIN SPODOPTERA LITTORALIS NUCLEAR POLYHEDROSIS VIRUS 17-51 PREV_BIV27 TRANSFORMING PROTEIN 21 KIRSTEN MURINE SARCOMA VIRUS 142-176 PREV_EIAV9 REV PROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) 77-115 PREV_EIAVC REV PROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) 51-89 PREV_EIAVY REV PROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 51-89 PREV_HV112 REV PROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) 81-119 PREV_HV1A2 REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CLONE 12) 35-69 PREV_HV1B1 REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISO- 32-69 LATE PREV_HV1B8 REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) 35-69 PREV_HV1BN REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE) 25-59 PREV_HV1BR REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE) 22-59 PREV_HV1EL REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) 35-69 PREV_HV1H2 REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 32-66 PREV_HV1J3 REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) 35-69 PREV_HV1JR REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 29-63 PREV_HV1MA REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) 31-66 PREV_HV1MN REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) 31-66 PREV_HV1OY REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (MN ISOLATE) 31-66 PREV_HV1PV REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) 32-69 PREV_HV1S3 REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) 35-69 AN PREV_HV1SC REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF33 ISOLATE) 35-69 PREV_SIVAI REV PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SC ISOLATE) 32-69 PREV_SIVAG REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 26-77 PREV_SIVAI REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 26-77 PREV_SIVAT REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 29-77 PREV_SIVCZ REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 28-75 PREV_VILV REV PROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 33-67 PRIR1_ASFM2 REV PROTEIN VISNA LENTIVIRUS (STRAIN 1514) 21-62 PRIR1_EBV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWILIL 20/1) 7-41 88-133 635-683 LAR PRIR1_HCMVA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 231-247 689-723 LAR PRIR1_HSVEB RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 632-668 LAR PRIR1_HSVSA RIBONUCLEOSIDE-DIPHOSPI4ATE REDUCTASE EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 76-110 LAR PRIR1_VACCC R1DONUCLEOSIDE-DIPHOSPHATE REDUCTASE HERPES VIRUS SAIMIRI (STRAIN 11) 324-365 LAR PRIR1_VACCV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VACCINIA VIRUS (STRAIN COPENHAGEN) 367-402 LAR PRIR1_VARV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VACCINIA VIRUS (STRAIN WR) 367-402 LAR PRIR1_VZVD RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VARIOLA VIRUS 367-402 LAR PRIR2_EBV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 223-257 LAR PRIR2_HSVBJ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 89-137 SMA PRIR2_HSVEB RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BOVINE HERPES VIRUS TYPE 1 (STRAIN 34) 101-135 SMA PRIR2_HSVSA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 106-140 SMA PRIR2_SFVKA RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE HERPES VIRUS SAIMIRI (STRAIN 11) 125-159 SMA PRIR2_VACCC RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SHOPE FIBROMA VIRUS (STRAIN KASZA) 98-132 SMA PRIR2_VACCP RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VACCINIA VIRUS (STRAIN COPENHAGEN) 98-132 SMA PRIR2_VACCV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VACCINIA VIRUS (STRAIN L-IVP) 98-132 SMA PRIR2_VARV RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VACCINIA VIRUS (STRAIN WR) 98-132 SMA PRL1_HSV2H RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE VARIOLA VIRUS 98-132 SMA PRP94_VACCV NEUROVIRULENCE FACTOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 171-212 PRP94_VARV RNA-POLYMERASE-ASSOCIATED VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN 116-150 465-540 757-791 TRANSCRIPTION S PRPO1_VACCC RNA-POLYMERASE-ASSOCIATED VARIOLA VIRUS 41-75 116-150 465-540 757-791 TRANSCRIPTION S PRPO1_VACCV DNA-DIRECTED RNA POLYMERASE 147 KD VACCINIA VIRUS (STRAIN COPENHAGEN) 243-291 622-656 754-791 954-988 1006- POLYPE 1057 PRPO1_VARV DNA-DIRECTED RNA POLYMERASE 147 KD VACCINIA VIRUS (STRAIN WR) 243-291 622-656 754-791 965-988 1024- POLYPE 1058 PRPO2_CAPVK DNA-DIRECTED RNA POLYMERASE 147 KD VARIOLA VIRUS 243-291 622-656 754-791 954-988 1006- POLYPE 1057 PRPO2_COWPX DNA-DIRECTED RNA POLYMERASE 132 KD CAPRIPOXVIRUS (STRAIN KS-1) 19-60 114-155 589-630 POLYPE PRPO2_VACCV DNA-DIRECTED RNA POLYMERASE 132 KD COWPOX VIRUS 211-245 359-400 833-874 POLYPE PRPO2_VARV DNA-DIRECTED RNA POLYMERASE 132 KD VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN) 211-245 359-400 833-874 POLYPE PRPO4_VACCC DNA-DIRECTED RNA POLYMERASE 132 KD VARIOLA VIRUS 211-245 359-400 833-874 POLYPE PRPO4_VACCV DNA-DIRECTED RNA POLYMERASE 35 KD VACCINIA VIRUS (STRAIN COPENHAGEN) 62-116 POLYPEP PRPO4_VARV DNA-DIRECTED RNA POLYMERASE 35 KD VACCINIA VIRUS (STRAIN WR) 62-116 POLYPEP PRPO5_VACCC DNA-DIRECTED RNA POLYMERASE 35 KD VARIOLA VIRUS 62-116 POLYPEP PRPO5_VACCV DNA-DIRECTED RNA POLYMERASE 30 KD VACCINIA VIRUS (STRAIN COPENHAGEN) 1-71 POLYPEP PRPO5_VARV DNA-DIRECTED RNA POLYMERASE 30 KD VACCINIA VIRUS (STRAIN WR) 1-71 POLYPEP PRPO6_VACCV DNA-DIRECTED RNA POLYMERASE 30 KD VARIOLA VIRUS 1-71 POLYPEP PRPO6_VARV DNA-DIRECTED RNA POLYMERASE 22 KD VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN) 25-59 POLYPEP PRPO7_VACCV DNA-DIRECTED RNA POLYMERASE 22 KD VARIOLA VIRUS 25-59 POLYPEP PRPO7_VARV DNA-DIRECTED RNA POLYMERASE 19 KD VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN) 43-93 POLYPEP PRPOA_LELV DNA-DIRECTED RNA POLYMERASE 19 KD VARIOLA VIRUS 43-93 POLYPEP PRPOL_EAV RNA-DIRECTED RNA POLYMERASE LELYSTAD VIRUS 1533- 1721- 1958- 2019- 1567 1758 1992 2157 PRRP1_IAANN RNA-DIRECTED RNA POLYMERASE EQUINE ARTERITIS VIRUS 1083- 1477- 1633- 1117 1518 1673 PRRP1_IABEI RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 171-242 279-313 P1 PRRP1_IADUN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/BEIJING/11/56) 171-242 279-313 350-391 P1 PRRP1_IAGU2 RNA-DIRECTED RNA POLYMERASIS SUBUNIT INFLUENZA A VIRUS (STRAIN A/DUNEDIN/4/73) 171-242 279-313 P1 PRRP1_IAHLO RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 171-242 279-313 P1 PRRP1_IAHTE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 168-242 279-313 P1 PRRP1_IAKIE RNA-DIRECTED BRA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 168-242 279-313 P1 PRRP1_IAKOR RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 171-242 279-313 P1 PRRP1_IALE1 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 171-242 279-313 P1 PRRP1_IALE2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 171-242 279-313 P1 PRRP1_IALE3 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 171-242 279-313 P1 PRRP1_IAMAN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57) 171-242 279-313 P1 PRAP1_IAME8 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 171-242 279-313 P1 PRRP1_IANT6 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/MEMPHIS/8/88) 171-242 279-313 P1 PRRP1_IAPUE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/NT/60/61) 171-242 279-313 P1 PRRP1_IASIN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 168-242 279-313 P1 PRRP1_IATKM RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 171-242 279-313 P1 PRRP1_IAV17 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80 171-242 279-313 P1 PRRP1_IAWIL RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 171-242 279-313 P1 PRRP1_IAWIS RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN WILSON-SMITH/33) 168-242 279-313 P1 PRRP1_IAZH3 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88) 168-242 279-313 P1 PRRP1_IAZON RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 187-242 279-313 P1 PRRP1_IAZTF RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81) 171-242 279-313 P1 PRRP1_INBAC RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77) 171-242 279-313 P1 PRRP1_INBAD RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN B/ANN ARBOR/1/66) 208-249 P1 PRRP1_INBLE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE] 208-249 P1 PRRP1_INCJJ RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN B/LEE/40) 208-249 P1 PRRP2_IAANN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN C/JJ/50) 350-384 648-686 707-752 P1 PRRP2_IADH2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 110-144 177-218 P2 PRRP2_IAFPR RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 110-144 177-218 P2 PRRP2_IAGU2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 110-144 177-218 P2 VIRUS/ROSTOCK PRRP2_IAHLO RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 110-144 177-218 P2 PRRP2_IAHTE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 110-144 177-218 P2 PRRP2_IAKOR RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 110-144 177-218 P2 PRRP2_IALE1 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 110-144 177-218 P2 PRRP2_IALE2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 110-144 177-218 P2 PRRP2_IAMAN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/27/57) 110-144 177-218 P2 PRRP2_IANT6 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 110-144 177-218 P2 PRRP2_IAP10 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/NT/60/68) 110-144 177-218 P2 PRRP2_IAPUE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79) 110-144 177-218 P2 PRRP2_IARUD RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 110-144 177-218 P2 PRRP2_IASIN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW JERS 110-144 177-218 P2 PRRP2_IATKM RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 110-144 177-218 P2 PPRP2_IAV17 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80) 110-144 177-218 P2 PRRP2_IAWIL RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 110-144 177-218 P2 PRRP2_IAZH2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 110-144 177-218 P2 PRRP2_IAZH3 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78 110-144 177-218 P2 PRRP2_IAZ11 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 110-144 177-218 P2 PRRP2_IAZTF RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30 110-144 177-218 P2 PRRP2_INBAC RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77) 110-144 177-218 P2 PRRP2_INBAD RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 111-196 349-390 P2 ADAPTE PRRP2_INBSI RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]) 111-196 349-390 P2 PRRP3_IAANN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 111-196 349-383 P2 PRRP3_IABUD RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 1-42 363-402 473-514 707-755 P3 PPRP3_IACHI RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/HOKKAIDO/1/77) 1-42 363-420 473-514 518-567 707-755 P3 PRRP3_IAFPR RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 1-42 363-402 473-514 707-755 P3 PRRP3_IAFPW RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 1-42 363-402 473-514 707-755 P3 VIRUS/ROSTOCK PRRP3_JAGU2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 1-42 363-402 473-514 707-755 P3 VIRUS/WEYBRID PRRP3_IAGUA RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77 1-42 363-402 473-514 707-755 P3 PRRP3_IAHK6 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84) 7-41 363-402 473-514 707-755 P3 PRRP3_IAHLO RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/860) 1-42 363-402 473-514 707-755 P3 PRRP3_IAHPR RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 1-42 363-402 473-514 707-755 P3 PRRP3_IAKIE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 1-42 363-402 473-514 721-755 P3 PRRP3_IAKOR RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 1-42 363-402 473-514 707-755 P3 PRRP3_IALE1 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 1-42 363-402 473-514 707-755 P3 PRRP3_IALE2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 1-42 363-402 473-514 707-755 P3 PRRP3_IALE3 RNA-DIRECTED RNA POLYMERASE SUBUNIT P3 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 1-42 363-402 473-514 707-555 P3 PRRP3_IAMAN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57) 1-42 363-402 473-514 707-755 P3 PRRP3_IAME8 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 363-402 473-514 707-755 P3 PRRP3_IANT6 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/MEMPHIS/8/88) 7-41 363-402 473-514 707-755 P3 PRRP3_IAPUE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/NT/60/68) 1-42 363-402 473-514 707-755 P3 PRRP3_IARUD RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 1-42 363-402 473-514 707-755 P3 PRRP3_IASE2 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 1-42 363-402 473-514 707-755 P3 JERSE PRRP3_IASIN RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/133/82) 1-42 363-402 473-514 707-755 P3 PRRP3_IATKM RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 1-42 363-402 473-514 707-755 P3 PRRP3_IAV17 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80) 1-42 363-402 473-514 707-755 P3 PRRP3_IAWIL RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 1-42 363-402 473-514 707-755 P3 PRRP3_IAZI1 RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33 1-42 363-402 473-514 707-755 P3 PRRP3_IAZTE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 1-42 363-402 473-514 707-755 P3 PRRP3_INBAC RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77 7-41 363-402 473-514 707-755 P3 PRRP3_INBAD RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 458-533 P3 ADAPTE PRRP3_INCBE RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA B VIRUS (STRAIN B/ANN ARROR/1/66 [WILD-TYPE]) 458-533 P3 PRRP3_INCJJ RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85) 235-269 275-309 P3 PRRP3_THOGV RNA-DIRECTED RNA POLYMERASE SUBUNIT INFLUENZA C VIRUS (STRAIN C/JJ/50) 235-269 275-316 P3 PRRPA_CVH22 RNA-DIRECTED RNA POLYMERASE SUBUNIT THOGOTO VIRUS 343-401 P3 PRRPA_CVMJH RNA-DIRECTED RNA POLYMERASE HUMAN CORONAVIRUS (STRAIN 229E) 358-392 495-571 1742- 1971- 3664- 3912- 1776 2008 3724 3946 PRRPB_BEV RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 617-651 1364- 2769- 3586- 3821- 4075- 4319- 1398 2803 3620 3855 4121 4353 PRRPB_CVMA5 RNA-DIRECTED RNA POLYMERASE BERNE VIRUS 20-64 617-651 943- 1009 PRRPB_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN A59) 1129- 1303- 1453- 1692- 2629- 1170 1337 1494 1726 2670 PRRPB_IBVB RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 1129- 1303- 1453- 1690- 2627- 1170 1337 1494 1724 2668 PRRPB_IBVK RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) 499-550 650-695 1460- 1509- 2246- 1494 1548 2287 PRRPL_BTV10 RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 115-156 PRRPL_BUNYW RI4A-DIRECTED RNA POLYMERASE BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 308-342 705-748 825-903 1021- 1114- 1076 1201 PRRPL_CDVO RNA POLYMERASE BUNYAMWERA VIRUS 2-36 80-114 308-363 371-412 1704- 1802- 1889- 1741 1861 1935 PRRPL_HANTV RNA POLYMERASE BETA SUBUNIT CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 20-54 PRRPL_HRSVA RNA POLYMERASE HANTAAN VIRUS (STRAIN 76-118 98-139 174-208 372-431 557-591 655-696 731-783 905-949 1276- 1310 1419- 1742- 1993- 1453 1776 2027 PRRPL_MABVM RNA POLYMERASE BETA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2 87-118 827-861 1131- 1185- 1465- 1179 1220 1517 PRRPL_MABVP RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN MUSOKE) 597-631 1046- 1490- 1804- 2029- 2194- 1092 1552 1838 2063 2266 PRRPL_MEASE RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN POPP) 597-631 1046- 1490- 1092 1552 PRRPL_MUMPM RNA POLYMERASE BETA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 197-231 790-824 869-903 1064- 1283- 2121- 1109 1317 2155 PRRPL_NDVB RNA POLYMERASE BETA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 164-214 220-254 267-304 576-627 752-807 1231- 1447- 1487- 1286 1481 1531 1566- 2191- 1600 2225 PRRPL_PI2HT RNA POLYMERASE BETA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 167-208 230-295 1969- 2043- 2108- 2013 2077 2142 PRRPL_PI3H4 RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 136-170 575-628 750-785 1226- 1316- 1417- 1564- 1687- 1284 1357 1479 1630 1721 1901- 1955 PRRPL_PUUMH RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 48-91 107-163 540-574 747-781 1064- 1293- 1499- 1994- 1129 1356 1536 2036 PRRPL_RABVP RNA-DIRECTED RNA POLYMERASE PUUMALA VIRUS (STRAIN HALLNAS B1) 98-132 384-415 444-488 557-591 655-696 731-783 922-976 1119- 1153 1742- 1940- 1993- 1776 1975 2032 PRRPL_RABVS RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN PV) 73-114 197-231 696-730 1174- 1522- 1584- 2068- 1222 1580 1618 2123 PRRPL_RDV RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN SAD B19) 73-114 197-231 696-730 749-783 1174- 1522- 1584- 1222 1580 2123 PRRPL_RVFVZ RNA-DIRECTED RNA POLYMERASE RICE DWARF VIRUS 17-61 534-575 844-878 918-985 1037- 1071 PRRPL_SEND5 RNA-DIRECTED RNA POLYMERASE RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) 398-439 641-678 832-887 1081- 1653- 1819- 1115 1687 1870 PRRPL_SENDE RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 309-343 540-600 612-656 747-781 1064- 1239- 1499- 2000- 1119 1280 1536 2034 2146- 2216 PRRPL_SENDZ RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN ENDERS) 129-163 360-420 432-476 567-601 884-939 1059- 1319- 1820- 1100 1356 1854 1966- 2036 PRRPL_SEOU8 RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z) 309-343 540-600 612-656 747-781 1064- 1239- 1499- 2000- 1119 1280 1536 2034 2146- 2216 PRRPL_SVSWR RNA-DIRECTED RNA POLYMERASE SEOUL VIRUS (STRAIN 80-39) 98-139 174-208 557-591 655-696 731-765 1742- 1947- 1993- 1776 1981 2027 PRRPL_SYNV RNA POLYMERASE BETA SUBUNIT SIMIAN VIRUS 5 (STRAIN 21004-WR) 547-627 747-781 1225- 1319- 1592- 1676- 2024- 1280 1353 1626 1715 2058 PRRL_TSWVB RNA POLYMERASE BETA SUBUNIT SONCHUS YELLOW NET VIRUS 760-794 825-859 977- 1089- 1978- 2059- 1014 1137 2032 2107 PRRPL_UUK RNA-DIRECTED RNA POLYMERASE TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNHI/BR 46-101 399-423 539-573 589-634 1119- 1195- 1321- 1538- 1153 1236 1379 1572 1684- 1857- 2073- 2156- 2206- 2315- 2378- 2809- 1725 1898 2127 2200 2247 2368 2419 2843 PRRPL_VSVJH RNA POLYMERASE UUKUNIEMI VIRUS 127-183 282-323 836-874 1030- 1481- 2015- 2061- 1071 1515 2049 2098 PRRPL_VSVJO RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA 319-358 674-715 720-763 1522- 1802- 1567 1836 PRRPL_VSVSJ RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA 319-358 674-715 720-763 1802- 1836 PRRPO_ACLSV RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (STRAIN SAN JAN) 674-715 720-763 1019- 1742- 2066- 1074 1799 2107 PRRPO_BWYVF RNA-DIRECTED RNA POLYMERASE APPLE CHLOROTIC LEAF SPOT VIRUS 228-262 557-596 916-950 1235- 1269 PRRPO_BYDVI PUTATIVE RNA-DIRECTED RNA POLYMERASE BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 304-341 PRRPO_BYDVP PUTATIVE RNA-DIRECTED RNA POLYMERASE BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PSI) 234-285 PRRPO_BYDVR PUTATIVE RNA-DIRECTED RNA POLYMERASE BARLEY YELLOW DWARF VIRUS (ISOLATE PAV) 234-285 PRRPO_CARMV PUTATIVE RNA-DIRECTED RNA POLYMERASE BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV) 234-285 PRRPO_CGMVS PROBABLE RNA-DIRECTED RNA POLYMERASE CARNATION MOTTLE VIRUS 93-131 PRRPO_IBDVS PUTATIVE RNA-DIRECTED RNA POLYMERASE CUCUMBER GREEN MOTTLE MOSAIC VIRUS (WATERMELON 7-41 387-428 446-480 726-767 1445- STR 1479 PRRPO_IBDVA PUTATIVE RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70) 384-432 446-484 PRRPO_IPNVJ PUTATIVE RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 144-185 266-307 709-757 771-809 AUSTRALI PRRPO_IPNVS PUTATIVE RNA-DIRECTED RNA POLYMERASE INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE 147-181 268-407 501-535 750-802 JASPER) PRRPO_LYCVA PUTATIVE RNA-DIRECTED RNA POLYMERASE INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE SP) 147-181 366-407 501-535 753-802 PRRPO_LYCVW RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN 301-346 805-886 926-990 1509- 2090- ARMSTRON 1543 2124 PRRPO_MCMV RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE) 301-345 PRRPO_PEAMV PROBABLE RNA-DIRECTED RNA POLYMERASE MAIZE CHLOROTIC MOTTLE VIRUS 181-215 697-731 PRRPO_PLRVI RNA-DIRECTED RNA POLYMERASE PEA ENATION MOSAIC VIRUS 321-358 PRRPO_PLRVW PUTATIVE RNA-DIRECTED RNA POLYMERASE POTATO LEAFROLL VIRUS (STRAIN 1) 336-373 423-457 PRRPO_PPMVS PUTATIVE RNA-DIRECTED RNA POLYMERASE POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 336-373 423-457 PRRPO_RCNMV PUTATIVE RNA-DIRECTED RNA POLYMERASE PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN 321-362 402-454 627-661 862-896 PRRPO_REOVD PUTATIVE RNA-DIRECTED RNA POLYMERASE RED CLOVER NECROTIC MOSAIC VIRUS 666-700 PRRPO_REOVJ RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 3/STRAIN DEARING) 310-361 PRRPO_REOVL RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 2/STRAIN D5/JONES) 310-344 PRRPO_ROTBR RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 1/STRAIN LANG) 310-361 PRRPO_ROTBU RNA-DIRECTED RNA POLYMERASE SUBUNIT BOVINE ROTAVIRUS (STRAIN RF) 60-96 133-167 204-245 535-569 579-631 639-686 690-724 771-805 VP1 PRRPO_ROTPC RNA-DIRECTED RNA POLYMERASE SUBUNIT BOVINE ROTAVIRUS (STRAIN UK) 60-96 133-167 204-245 535-569 579-631 639-686 690-724 771-805 VP1 PRRPO_ROTPG RNA-DIRECTED RNA POLYMERASE SUBUNIT PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 3-44 255-299 335-397 476-510 518-620 966- VP1 1007 PRRPO_ROTSI RNA-DIRECTED RNA POLYMERASE SUBUNIT PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 62-96 133-167 336-377 581-631 636-686 690-724 771-842 VP1 PRRPO_SBMV RNA-DIRECTED RNA POLYMERASE SUBUNIT SIMIAN II ROTAVIRUS (STRAIN SA11) 60-96 133-167 535-569 579-631 639-686 690-724 771-805 VP1 PRRPO_SCVLA PROBABLE RNA-DIRECTED RNA POLYMERASE SOUTHERN BEAN MOSAIC VIRUS 628-665 PRRPO_TACV RNA-DIRECTED RNA POLYMERASE SACCHAROMYCES CEREVISIAE VIRUS L-A 100-134 147-191 PRRPO_TMGMV RNA POLYMERASE TACARIBE VIRUS 155-204 220-278 375-416 484-518 891-925 1030- 1285- 1981- 1081 1319 2015 PRRPO_TMV PUTATIVE RNA-DIRECTED RNA POLYMERASE TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 401-449 682-720 765-818 PRRPO_TMVKR PUTATIVE RNA-DIRECTED RNA POLYMERASE TOBACCO MOSAIC VIRUS (VULGARE) 3-37 401-453 665-699 PRRPO_TMVTO PUTATIVE RNA-DIRECTED RNA POLYMERASE TOBACCO MOSAIC VIRUS (STRAIN KOREAN) 3-37 401-453 665-699 PRRPO_TNVD PUTATIVE RNA-DIRECTED RNA POLYMERASE TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) 3-37 401-453 860-894 PRRPP_BRSVA RNA-DIRECTED RNA POLYMERASE TOBACCO NECROSIS VIRUS (STRAIN D) 102-144 PRRPP_CDVO RNA POLYMERASE ALPHA SUBUNIT BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 99-158 160-216 PRRPP_HRSV RNA POLYMERASE ALPHA SUBUNIT CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 312-373 PRRPP_HRSV1 RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS 99-158 160-216 PRRPP_HRSVA RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI 99-158 160-216 PRRPP_HRSVL RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 99-158 160-216 PRRPP_MEASE RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAI 99-158 160-216 PRRPP_MEAS1 RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 315-374 460-495 PRRPP_MEASY RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN IP-3-CA) 3155-374 460-495 PRRPP_MUMP1 RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN YAMAGATA-1) 315-374 460-495 PRPPP_MUMPE RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN SBL-1) 149-183 213-275 PRRPP_MUMPM RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN ENDERS) 214-276 PRRPP_NDVA RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 214-276 PRRPP_NDVB RNA POLYMERASE ALPHA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 100-134 VICTORIA/32) PRRPP_PI1HB RNA POLYMERASE ALPHA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 100-138 PRRPP_PI1HC RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35) 80-114 313-364 375-437 PRRPP_PI1HD RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 80-114 313-364 375-437 PRRPP_PI1HE RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-5/73) 80-114 313-364 375-437 PRRPP_PI2H RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/830) 66-114 237-271 313-364 375-437 PRRPP_PI2HT RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS 218-281 PRRPP_PI3B RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 218-281 PRRPP_P13H4 RNA POLYMERASE ALPHA SUBUNIT BOVINE PARAINFLUENZA 3 VIRUS 31-130 414-470 PRRPP_PI4HA RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 410-499 PRRPP_PI4HB RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 4-38 222-285 PRRPP_PIRYV RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333) 222-285 PRRPP_RABVA RNA POLYMERASE ALPHA SUBUNIT PIRY VIRUS 137-174 PRRPP_RABVC RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN AVO1) 93-127 PRRPP_RABVE RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN CVS-11) 93-127 PRRPP_RABVP RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN ERA), AND (STRAIN PM) 93-127 PRRPP_RABVS RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN PV) 93-127 PRRPP_SEND5 RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN SAD B19 93-127 PRRPP_SEND6 RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 313-364 375-447 PRRPP_SENDF RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN 6/94) 323-364 375-447 PRRPP_SENDH RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN FUSHIMI) 313-364 375-447 PRRPP_SENDZ RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN HARRIS) 313-364 375-447 PRRPP_SV5 RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN Z) 313-364 375-447 PRRPP_SYNV RNA POLYMERASE ALPHA SUBUNIT SIMIAN VIRUS 5 (STRAIN W3) 205-278 PRRPP_VSVIG RNA POLYMERASE ALPHA SUBUNIT SONCHUS YELLOW NET VIRUS 138-173 233-281 PRRPP_VSVIM RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN G 3-43 PRRPP_VSVIM RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN M 3-43 PRRPP_VSVJO RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA 3-37 PRRPP_VSVSJ RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA 3-37 PSPHR_AMEPV RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 3-43 PSPI2_VACCV SPHEROIDIN AMSACTA MOOREI ENTOMOPOXVIRUS 223-264 361-395 PSPI2_VARV SERINE PROTEINASE INHIBITOR VACCINIA VIRUS (STRAIN WR) 21-86 PSPI3_VACCC SERINE PROTEINASE INHIBITOR 2 VARIOLA VIRUS 21-86 PSPI3_VACCV SERINE PROTEINASE INHIBITOR 3 VACCINIA VIRUS (STRAIN COPENHAGEN) 118-167 225-266 PSPI3_VARV SERINE PROTEINASE INHIBITOR 3 VACCINIA VIRUS (STRAIN WR) 118-167 225-266 PSPIA_VACCC SERINE PROTEINASE INHIBITOR 3 VARIOLA VIRUS 122-171 229-270 PT2C2_CHVP1 SERINE PROTEINASE INHIBITOR 2 HOMOLOG VACCINIA VIRUS (STRAIN COPENHAGEN) 11-65 FIRST PTAA2_VACCV TYPE II RESTRICTION ENZYME CVTAII PARAMECIUM BURSARIA CHLORELLA VIRUS 1 48-85 PTAG8_FOWPV TRANS-ACTIVATOR PROTEIN A2 VACCINIA VIRUS (STRAIN WR, COPENHAGEN, AND VARIOLA 95-133 173-207 VI PTAG8_VACCV TRANS-ACTIVATOR PROTEIN FP0 FOWLPOX VIRUS 3-51 PTAG8_VARV TRANS-ACTIVATOR PROTEIN GK1 VACCINIA VIRUS (STRAIN WR), (STRAIN COPENHAGEN) 3-51 PTALA_BFDV TRANS-ACTIVATOR PROTEIN GK1 VARIOLA VIRUS 3-51 PTALA_POVBO LARGE T ANTIGEN BUDGERIGAR FLEDGLING DISEASE VIRUS 291-325 464-498 PTALA_POVHA LARGE T ANTIGEN BOVINE POLYOMAVIRUS 303-337 495-537 PTALA_POVJC LARGE T ANTIGEN HAMSTER POLYOMAVIRUS 464-501 587-621 PTALA_POVLY LARGE T ANTIGEN POLYOMAVIRUS JC 153-187 589-623 PTALA_POVM3 LARGE T ANTIGEN LYMPHOTROPIC POLYOMAVIRUS 3-41 206-258 437-478 PTALA_POVMA LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN 3) 509-544 PTALA_POVMC LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN A2) 507-542 PTAMI_POVHA LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL- 504-539 PLAQUE) PTAMI_POVM3 MIDDLE T ANTIGEN HAMSTER POLYOMAVIRUS 339-378 PTAMI_POVMA MIDDLE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN 3) 211-245 388-422 PTAMI_POVMC MIDDLE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN A2) 192-226 369-403 PTASM_POVBO MIDDLE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL- 192-226 369-403 PLAQUE) PTASM_POVLY SMALL T ANTIGEN BOVINE POLYOMAVIRUS 41-85 PTATR_NPVAC SMALL T ANTIGEN LYMPHOTROPIC POLYOMAVIRUS 3-41 PTATR_NPVBM TRANS-ACTIVATING TRANSCRIPTIONAL AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 408-442 46-480 489-523 REGULAT PTATR_NPVOP TRANS-ACTIVATING TRANSCRIPTIONAL BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS 413-447 451-485 494-528 REGULAT PTAT_SIVAI TRANS-ACTIVATING TRANSCRIPTIONAL ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 391-455 511-554 REGULAT VIRUS PTAT_SIVAI TAT PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 73-109 PTAT_VILV TAT PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 137-185 PTAT_VILV1 TRANS-ACTIVATING TRANSCRIPTIONAL VISNA LENTIVIRUS (STRAIN 1514) 28-74 REGULAT PTAT_VILV2 TRANS-ACTIVATING TRANSCRIPTIONAL VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1) 40-74 REGULAT PTCB_FLV TRANS-ACTIVATING TRANSCRIPTIONAL VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2) 40-74 REGULAT PTEGP_HSVI1 T-CELL RECEPTOR BETA CHAIN PRECURSOR FELINE LEUKEMIA VIRUS 279-321 PTEGP_SVEA TEGUMENT PHOSPHOPROTEIN US9 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 27-61 PTEGP_HSVEB NONSENSE PTEGP_HSVEK NONSENSE PTEGP_HSVSB NONSENSE PTEGU_EBV NONSENSE PTEGU_HCMVA LARGE TEGUMENT PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 768-802 821-855 938-972 1101- 1208- 1479- 1700- 1809- 1138 1242 1516 1753 1867 1870- 1920- 3108- 1916 1954 3149 PTEGU_HSV11 PROBABLE LARGE TEGUMENT PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 34-71 215-249 543-581 700-738 868-909 936-977 1004- 1163- 1038 1200 1237- 2200- 1296 2235 PTEGU_HSV6G LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 731-765 801-842 1022- 1223- 1275- 1315- 1520- 1609- 1059 1269 1309 1370 1531 1669 1673- 1749- 1820- 2670- 1714 1783 1854 2704 PTEGU_HSVEB LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 30-71 224-262 567-608 712-757 951- 1091- 1192- 1357- 1000 1181 1233 1400 PTEGU_HSVSA LARGE TEGUMENT PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 560-597 635-683 794-848 908-956 1108- 1155- 1399- 1487- 1151 1246 1458 1549 1619- 1661- 1702- 1806- 1947- 1657 1695 1736 1843 1981 PTEGU_VZVD PROBABLE LARGE TEGUMENT PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 520-558 560-598 615-652 672-710 777-822 846-898 948-986 1287- 1332 1434- 1502 PTERM_ADE02 LARGE TEGUMENT PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 657-696 713-747 804-841 933-972 1117- 1415- 1528- 1572- 1158 1471 1562 1620 1633- 1719- 1945- 2727- 1705 1756 1986 2761 PTERM_ADE05 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 2 490-572 PTERM_ADE07 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 5 490-592 PTERM_ADE12 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 7 491-559 PTJUN_AVIS1 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 12 443-491 497-538 PTMAF_AVIS4 TRANSFORMING PROTEIN JUN AVIAN SARCOMA VIRUS (STRAIN 17) 210-284 PTOP1_SFVKA TRANSFORMING PROTEIN MAF AVIAN MUSCULOAPONEUROTIC FIBROSARCOMA VIRUS AS42 247-288 295-340 PTOP2_ASFB7 DNA TOPOISOMERASE SHOPE FIBROMA VIRUS (STRAIN KASZA) 127-183 269-310 PTOP2_ASFM2 DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 146-180 481-515 601-642 945-979 1038- 1123- 1093 1162 PTSIS_SMSAV DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWILIL 20/1) 146-180 480-514 600-641 902-936 944-978 1038- 1122- 1091 1161 PTYSY_VZVD PDGF-RELATED TRANSFORMING PROTEIN P28- SIMIAN SARCOMA VIRUS 16-71 SIS PUBIL_NPVOP THYMIDYLATE SYNTHASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 235-260 PUL01_HCMVA UBIQUITIN-LIKE PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 43-80 VIRUS PUL03_HSV11 HYPOTHETICAL PROTEIN UL1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 169-203 PUL03_HSV2H PROTEIN UL3 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 94-128 PUL03_HSVEB PROTEIN UL3 HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 92-126 PUL04_HSV11 GENE 60 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 70-104 PUL06_EBV PROTEIN UL4 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 102-136 PUL06_HCMVA VIRION PROTEIN BBRF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 104-145 313-347 376-410 PUL06_HSV11 HYPOTHETICAL PROTEIN UL6 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 216-250 PUL06_HSVEB VIRION PROTEIN UL6 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 36-94 103-141 294-329 337-371 416-479 PUL06_HSVSA VIRION GENES 56 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 62-170 357-413 448-503 PUL06_ZVD VIRION GENE 43 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 90-140 151-194 302-336 364-405 PUL08_HCMVA VIRION GENE 54 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 87-131 350-409 704-738 PUL09_HSVEB HYPOTHETICAL PROTEIN UL8 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 6-50 PUL09_ZVD ORIGIN OF REPLICATION BINDING PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 174-208 PUL11_CMVA ORIGIN OF REPLICATION BINDING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 122-363 PUL13_HCMVA NONSENSE PUL14_HCMVA HYPOTHETICAL PROTEIN UL13 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 47-81 185-227 PUL14_HSVEB HYPOTHETICAL PROTEIN UL14 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 305-343 PUL14_PRVN3 HYPOTHETICAL GENE 48 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 52-96 246-283 PUL14_VZVD UL14 PROTEIN HOMOLOG PSEUDORABIES VIRUS (STRAIN NIA-3) 43-95 PUL16_HSVEB HYPOTHETICAL GENE 46 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 61-103 PUL17_HSV6U GENE 46 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 266-300 PUL21_HSVEB PROTEIN 10R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102 239-280 PUL23_HCMVA GENE 40 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 44-78 421-474 PUL24_HCMVA HYPOTHETICAL PROTEIN UL23 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 213-253 PUL24_ILTVT HYPOTHETICAL PROTEIN UL24 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 5-39 PUL25_HCMVA PROTEIN UL24 HOMOLOG INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE 161-195 V88 PUL25_HSV11 HYPOTHETICAL PROTEIN UL25 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 255-341 351-399 PUL25_HSVEB VIRION PROTEIN UL25 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 370-411 PUL25_HSVSA VIRION PROTEIN UL25 EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 364-413 PUL25_ILTVT VIRION GENE 19 PROTEIN HERPES VIRUS SAIMIPI (STRAIN 11) 29-92 183-231 365-406 PUL25_VZVD 64.1 KD VIRION PROTEIN INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE 38-84 165-206 V88 PUL31_HCMVA VIRION GENE 34 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 340-388 PUL31_HSVEB HYPOTHETICAL PROTEIN UL31 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 244-285 PUL31_VZVD GENE 29 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 153-187 PUL32_HSVEB GENE 27 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 163-197 PUL32_VZVD MAJOR ENVELOPE GLYCOPROTEIN 300 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(STRAIN AB1) 342-376 PUL33_HCMVA PROBASLE MAJOR ENVELOPE GLYCOPROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 72-106 296-344 26 PUL33_VZVD G-PROTEIN COUPLED RECEPTOR HOMOLOG HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 94-135 309-352 UL33 PUL34_EBV GENE 25 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 29-63 PUL34_HCMVA BFRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 159-200 PUL34_HSV11 HYPOTHETICAL PROTEIN UL34 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 113-147 PUL35_HCMVA VIRION PROTEIN UL34 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 187-221 PUL37_EBV HYPOTHETICAL PROTEIN UL35 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 231-268 PUL37_HSV11 PROTEIN BOLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 708-742 PUL37_HSVEB PROTEIN UL37 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 853-891 PUL37_HSVSA GENE 23 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 82-137 311-345 614-648 715-750 781-822 PUL37_VZVD GENE 63 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 6-65 682-741 PUL38_HCMVA GENE 21 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 719-753 786-827 PUL41_VZVD HYPOTHETICAL PROTEIN UL38 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 10-51 PUL42_HSV11 HOST SHUTOFF VIRION PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 330-366 PUL42_HSVEB DNA-BINDING PROTEIN UL42 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 134-168 221-263 PUL43_HCMVA DNA-BINDING GENE 18 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 138-172 PUL43_HSVE4 HYPOTHETICAL PROTEIN UL43 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 72-109 PUL43_VZVD MEMBRANE PROTEIN UL43 HOMOLOG EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 27-68 PUL45_HSV1K GENE 15 MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 312-363 PUL45_HSV1M PROTEIN UL45 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 96-137 PUL47_HCMVA PROTEIN UL45 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN MP) 96-137 PUL47_HSV11 PROTEIN UL47 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 114-165 448-415 745-856 PUL47_HSV1F VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 473-518 PUL47_HSVBP VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F 473-518 PUL47_HSVE4 80.7 KD ALPHA TRANS-INDUCING PROTEIN BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2) 561-612 PUL47_HSVEB 97 KD ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 183-246 582-620 825-866 PUL47_VZVD 97 KD ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 219-253 371-412 817-866 PUL50_HCMVA ALPHA TRANS-INDUCING FACTOR 91.8 KD VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 84-135 156-209 664-701 PROTEIN PUL51_HSV11 PROTEIN UL50 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 155-189 PUL51_HSVE4 PROTEIN UL51 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 118-169 PUL51_HSVEB GENE 8 PROTEIN EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 121-162 PUL51_VZVD GENE 8 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 120-161 PUL52_EBV GENE 7 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 122-163 PUL52_HSV11 PROBABLE DNA REPLICATION PROTEIN BSLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 188-255 PUL52_HSVEB DNA REPLICATION PROTEIN UL52 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 189-223 PUL52_HSVSA DNA REPLICATION PROTEIN UL52 EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 141-182 929-970 PUL52_VZVD PROBABLE DNA REPLICATION GENE 56 HERPES VIRUS SAIMIRI (STRAIN 11) 445-483 PROTEIN PUL53_HCMVA PROBABLE DNA REPLICATION GENE 6 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 301-342 PROTEIN PUL55_HSV2H PROTEIN UL53 CYTOMEGALOVIRUS (STRAIN AD169) 12-48 PUL64_HCMVA PROTEIN UL55 HERPES SIMPLEX VIRUS (TYPE 21 STRAIN HG52) 151-185 PUL70_HCMVA HYPOTHETICAL PROTEIN UL64 CYTOMEGALOVIRUS (STRAIN AD169) 32-73 PUL74_HCMVA PROBABLE DNA REPLICATION PROTEIN UL70 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 39-99 PUL87_HSV6U HYPOTHETICAL PROTEIN UL74 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 43-79 PUL87_HSVSA HYPOTHETICAL PROTEIN 5R HERPES SIMPLEX VIRUS (TYLPE 6/STRAIN UGANDA-1102) 729-770 PUL88_HCMVA HYPOTHETICAL GENE 24 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 366-400 582-616 PUL91_HSVSA HYPOTHETICAL PROTEIN UL88 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 357-391 PUL92_EBV HYPOTHETICAL GENE 30 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 24-58 PUL92_HCMVA HYPOTHETICAL PROTEIN BDLF4 EPSTEIN-BARR VIRUS (STRAIN B95-8) 107-144 188-222 PUL92_HSV6U HYPOTHETICAL PROTEIN UL92 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 79-116 PUL92_HSVSA HYPOTHETICAL PROTEIN 9R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 101-145 174-216 PUL93_HCMVA HYPOTHETICAL GENE 31 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 88-122 PUL95_HCMVA PROTEIN UL93 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 23-57 299-384 PUL95_HSV6U HYPOTHETICAL PROTEIN UL95 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 34-71 259-293 PUL96_HCMVA HYPOTHETICAL PROTEIN 13R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 73-151 233-270 PUL96_HSV6U HYPOTHETICAL PROTEIN UL96 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 51-103 PUL96_HSVSA HYPOTHETICAL PROTEIN 14R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 53-113 PULA2_HCMVA HYPOTHETICAL GENE 35 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 45-100 PULA4_HCMVA HYPOTHETICAL PROTEIN UL102 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 6-40 758-792 PULD0_HCMVA VIRION PROTEIN UL104 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 1-56 130-171 330-364 439-492 541-575 PUNG_HSV11 HYPOTHETICAL PROTEIN UL130 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 84-125 PUNG_HSV23 URACIL-DNA GLYCOSYLASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 227-268 PUNG_HSV2H URACIL-DNA GLYCOSYLASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 188-229 PUNG_HSVSA URACIL-DNA GLYCOSYLASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 11G52 148-189 PUNG_SFVKA URACIL-DNA GLYCOSYLASE HERPESVIRUS SAIMIRI (STRAIN 11) 135-176 PUS02_HSVEB URACIL-DNA GLYCOSYLASE SHOPE FIBROMA VIRUS (STRAIN KASZA) 81-115 PUS02_HSVEK GENE 68 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 79-120 PUS07_HCMVA US1 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN KENTUCKY A) 86-120 PUS11_HCMVA HYPOTHETICAL PROTEIN HXLFS 2-36 PUS14_HCMVA HYPOTHETICAL PROTEIN HXLF1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) PUS18_HCMVA HYPOTHETICAL PROTEIN HVLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 3-51 PUS23_HCMVA MEMBRANE PROTEIN HWLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 187-225 PUS24_HCMVA HYPOTHETICAL PROTEIN HHLF7 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 294-335 535-578 PUS26_HCMVA HYPOTHETICAL PROTEIN HHLF6 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 135-172 PUS27_HCMVA HYPOTHETICAL PROTEIN HHLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 535-584 PUS30_HCMVA G-PROTEIN COUPLED RECEPTOR HOMOLOG HUMAN CYTOMEGALO VIRUS (STRAIN AD169) 6-40 US27 PV125_AMVLE HYPOTHETICAL PROTEIN HHRF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 135-169 274-312 PV143_NPVAC 125 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN 11-52 326-367 591-649 PV16K_TRVPS HELICASE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 313-350 1114- 1179- 1150 1213 PV16K_TRVSY 16 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN PSG) 75-117 PV1A_BBMV 16 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN SYM) 75-117 PV1A_BMV 1A PROTEIN BROAD BEAN MOTTLE VIRUS 21-55 349-405 492-526 710-751 837-884 890-924 PV1A_CCMV 1A PROTEIN BROME MOSAIC VIRUS 4-66 348-411 PV1A_CMVFN 1A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS 4-53 242-276 348-389 487-526 PV1A_CMVO 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 11-66 393-434 584-619 868-916 PV1A_CMVQ 1A PROTEIN CUUMBER MOSAIC VIRUS (STRAIN O) 11-66 393-434 584-619 868-916 PV1A_PSVJ 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Q) 11-66 393-434 PV1A_TAV 1A PROTEIN PEANUT STUNT VIRUS (STRAIN J) 4-66 PV23K_HSVTH 1A PROTEIN TOMATO ASPERMY VIRUS 11-59 392-433 837-923 PV24K_BDV 23.5 KD PROTEIN TURKEY HERPESVIRUS (STRAIN H2) 177-211 PV25K_NPVAC 24 KD ANTIGEN BORNA DISEASE VIRUS 63-121 130-171 PV28K_PLRV1 25 KD PROTEIN AUTPGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 4-50 PV28K_PLRVW 28 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) 116-150 PV290_ASFL5 28 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 116-150 PV29K_PEBV LIS 290 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN LIS57) 138-183 PV29K_TRVSY 29.6 KD PROTEIN EARLY BROWNING VIRUS 115-192 PV29K_TRVTC 291 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN SYM), AND (STRAIN PSG) 167-201 PV2A_CCMV 29 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN TCM) 45-79 PV2A_CMVFN 2A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS 768-806 PV2A_PSVJ 2A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 386-420 PV2A_TAV 2A PROTEIN PEANUT STUNT VIRUS (STRAIN J) 717-751 PV30K_TRVTC 2A PROTEIN TOMATO ASPERMY VIRUS 722-756 PV360_ASFB7 29.1 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN TCM) 105-218 PV362_ASFB7 K′360 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 53-87 151-192 PV363_ASFB7 K′362 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 54-102 161-212 290-324 PV3A_BMV D′363 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 153-199 PV3A_CMVFN 3A PROTEIN BROME MOSAIC VIRUS 11-45 PV3A_CMVM 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 215-255 PV3A_CMVO 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN M) 215-255 PV3A_CMVY 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN O) 215-255 PV51K_ACLSV 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Y) 215-255 PV51K_BWYVF 50.8 KD PROTEIN APPLE CHLOROTIC LEAF SPOT VIRUS 72-106 PV51K_BWYVG 51 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 113-147 196-233 404-451 PV56K_PLRV1 51 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE GB1) 113-147 196-233 407-451 PV56K_PLRVW 56 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) 47-81 438-472 PV58K_BSMV 56 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 47-81 438-475 PV66K_BWYVF 58 KD PROTEIN BARLEY STRIPE MOSAIC VIRUS 128-162 323-371 PV70K_PLRV1 66.2 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 480-521 PV70K_PLRVW 69.7 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) 98-144 514-548 PV90K_AMVLE 69.7 KD PROTEIN POTATO LEAPROLL VIRUS (STRAIN WAGENINGEN) 98-144 409-443 514-548 PVA04_VACCC 90 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN) 107-141 PVA04_VACCV PROTEIN A4 VACCINIA VIRUS (STRAIN COPENHAGEN) 32-66 231-275 PVA04_VARV PROTEIN A4 VACCINIA VIRUS (STRAIN WR) 32-66 231-275 PVA06_VACCC PROTEIN A4 VARIOLA VIRUS 22-66 210-265 PVA06_VACCV PROTEIN A6 VACCINIA VIRUS (STRAIN COPENHAGEN) 97-213 314-355 PVA06_VARV PROTEIN A6 VACCINIA VIRUS (STRAIN WR) 96-212 313-354 PVA08_VACCC PROTEIN A6 VARIOLA VIRUS 97-213 313-358 PVA08_VARV PROTEIN A8 VACCINIA VIRUS (STRAIN COPENHAGEN) 176-236 PVA09_VACCC PROTEIN A8 VARIOLA VIRUS 176-236 PVA09_VARV PROTEIN A9 VACCINIA VIRUS (STRAIN COPENHAGEN) 46-81 PVA11_VACCC PROTEIN A9 VARIOLA VIRUS 46-95 PVA11_VARV PROTEIN A11 VACCINIA VIRUS (STRAIN COPENHAGEN) 97-134 141-175 219-283 PVA12_VACCC PROTEIN A11 VARIOLA VIRUS 98-176 220-284 PVA12_VARV PROTEIN A12 VACCINIA VIRUS (STRAIN COPENHAGEN) 114-148 PVA18_VACCC PROTEIN A12 VARIOLA VIRUS 111-152 PVA18_VACCV 56 KD ABORTIVE LATE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN 433-467 PVA18_VARV 56 KD ABORTIVE LATE PROTEIN VACCINIA VIRUS (STRAIN WR) 307-341 433-467 PVA20_VACCC 56 KD ABORTIVE LATE PROTEIN VARIOLA VIRUS 307-341 433-467 PVA20_VARV PROTEIN A20 VACCINIA VIRUS (STRAIN COPENHAGEN) 1-67 PVA22_VACCC PROTEIN A20 VARIOLA VIRUS 1-67 PVA22_VARV PROTEIN A22 VACCINIA VIRUS (STRAIN COPENHAGEN) 28-69 PVA23_VACCC PROTEIN A22 VARIOLA VIRUS 39-80 PVA23_VARV PROTEIN A23 VACCINIA VIRUS (STRAIN COPENHAGEN) 95-143 173-207 255-289 344-382 PVA31_VARV PROTEIN A23 VARIOLA VIRUS 95-143 173-207 255-289 344-382 PVA32_VACCV PROTEIN A31 VARIOLA VIRUS 88-126 PVA32_VARV PROTEIN A32 VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN PVA33_VARV PROTEIN A32 VARIOLA VIRUS 217-251 PVA36_VACCV PROTEIN A33 VARIOLA VIRUS 63-97 PVA36_VARV PROTEIN A36 PRECURSOR VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN) 26-67 109-155 PVA37_VACCC PROTEIN A36 PRECURSOR VARIOLA VIRUS 26-67 PVA37_VACCV PROTEIN A37 VACCINIA VIRUS (STRAIN COPENHAGEN) 24-65 PVA38_VACCC PROTEIN A37 VACCINIA VIRUS (STRAIN WR) 24-65 PVA38_VACCV PROTEIN A38 VACCINIA VIRUS (STRAIN COPENHAGEN) 44-91 PVA38_VARV PROTEIN A38 VACCINIA VIRUS (STRAIN WR) 44-91 PVA39_VACCC PROTEIN A38 VARIOLA VIRUS 44-91 PVA39_VACCV PROTEIN A39 VACCINIA VIRUS (STRAIN COPENHAGEN) 37-71 PVA46_VACCC PROTEIN A39 VACCINIA VIRUS (STRAIN WR) 75-109 PVA46_VACCV PROTEIN A46 VACCINIA VIRUS (STRAIN COPENHAGEN) 81-126 PVA46_VARV PROTEIN A46 VACCINIA VIRUS (STRAIN WR) 81-126 PVA47_VACCC PROTEIN A46 VARIOLA VIRUS 81-126 PVA47_VACCV PROTEIN A47 VACCINIA VIRUS (STRAIN COPENHAGEN) 62-96 143-184 PVA47_VARV PROTEIN A47 VACCINIA VIRUS (STRAIN WR) 62-96 143-184 PVA49_VACCC PROTEIN A47 VARIOLA VIRUS 62-96 143-184 PVA49_VACCV PROTEIN A49 VACCINIA VIRUS (STRAIN COPENHAGEN) 3-40 126-160 PVA49_VARV PROTEIN A49 VACCINIA VIRUS (STRAIN WR) 3-40 126-160 PVA52_VACCC PROTEIN A49 VARIOLA VIRUS 3-40 126-160 PVA52_VACCV PROTEIN A52 VACCINIA VIRUS (STRAIN COPENHAGEN) 91-132 PVA57_VACCC PROTEIN A52 VACCINIA VIRUS (STRAIN WR) 91-132 PVA57_VACCV GUANYLATE KINASE HOMOLOG VACCINIA VIRUS (STRAIN COPENHAGEN) 134-168 PVAL1_MSVK GUANYLATE KINASE HOMOLOG VACCINIA VIRUS (STRAIN WR) 134-168 PVAL1_MSVN AL1 PROTEIN MAIZE STREAK VIRUS (KENYAN ISOLATE) 230-269 PVAL1_MSVS AL1 PROTEIN MAIZE STREAK VIRUS (NIGERIAN ISOLATE) 228-262 PVAL1_SLCV AL1 PROTEIN MIAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE) 228-262 PVAL1_TYDVA AL1 PROTEIN SQUASH LEAF CURL VIRUS 117-151 PVAL3_ABMVW AL1 PROTEIN TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA) 191-225 PVAL3_BGMV AL1 PROTEIN ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA) 44-78 83-124 PVAL3_PYMVV AL3 PROTEIN BEAN GOLDEN MOSAIC VIRUS 44-78 83-124 PVAL3_SLCV AL3 PROTEIN POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA) 30-78 87-121 PVAL3_TGMV AL3 PROTEIN SQUASH LEAF CURL VIRUS 46-80 91-125 PVAT_CAMVC AL3 PROTEIN TOMATO GOLDEN MOSAIC VIRUS 44-78 PVAT_CAMVD APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 22-70 84-127 PVAT_CAMVE APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 22-70 PVAT_CAMVN APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 22-70 93-127 PVAT_CAMVP APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 22-70 93-127 PVAT_CAMVS APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) 22-70 93-127 PVAT_CAMVW APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 22-70 93-130 PVAT_CERV APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN W260) 36-70 PVB03_VACCV APHID TRANSMISSION PROTEIN CARNATION ETCHED RING VIRUS 99-138 PVB04_VACCC PROTEIN B3 VACCINIA VIRUS (STRAIN WR) 108-142 PVB04_VACCV PROTEIN B4 VACCINIA VIRUS (STRAIN COPENHAGEN) 89-123 321-372 496-530 PVB04_VARV PROTEIN B4 VACCINIA VIRUS (STRAIN WR) 89-123 321-372 PVB05_VACC0 PROTEIN B4 VARIOLA VIRUS 89-134 324-372 492-330 PVB05_VACCC PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN LC16MO) 254-298 PRECURSOR PVB05_VACCL PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 254-298 PRECURSOR PVB05_VACCV PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN LISTER) 254-298 PRECURSOR PVB07_VACCV PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN WR) 254-298 PRECURSOR PVB08_VACCC PROTEIN B7 PRECURSOR VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN) 28-62 PVB08_VACCV PROTEIN B8 PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 26-60 PVB18_VACCC PROTEIN B8 PRECURSOR VACCINIA VIRUS (STRAIN WR) 26-60 PVB18_VACCV PROTEIN B18 VACCINIA VIRUS (STRAIN COPENHAGEN) 337-375 491-532 PVB18_VARV PROTEIN B18 VACCINIA VIRUS (STRAIN WR) 337-375 491-532 PVB19_VACCC PROTEIN B18 VARIOLA VIRUS 337-378 491-532 PVB19_VACCD SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 87-121 PVB19_VACCV SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN DAIREN 1) 85-119 PVB20_VACCC SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN WR) 85-119 PVB21_VACCV PROTEIN B20 VACCINIA VIRUS (STRAIN COPENHAGEN) 48-85 PVBL1_BGMV PROTEIN B21 VACCINIA VIRUS (STRAIN WR) 61-95 PVBL1_SLCV BL1 PROTEIN BEAN GOLDEN MOSAIC VIRUS 159-193 PVBL1_TGMV BL1 PROTEIN SQUASH LEAF CURL VIRUS 159-193 PVBR1_BGMV BL1 PROTEIN TOMATO GOLDEN MOSAIC VIRUS 159-193 PVBR1_SLCV BR1 PROTEIN BEAN GOLDEN MOSAIC VIRUS 172-206 PVBR1_TGMV BR1 PROTEIN SQUASH LEAF CURL VIRUS 20-61 PVC02_VACCC BR1 PROTEIN TOMATO GOLDEN MOSAIC VIRUS 25-59 PVC02_ACCV PROTEIN C2 VACCINIA VIRUS (STRAIN COPENHAGEN) 37-82 262-302 391-442 PVC04_SFVKA PROTEIN C2 VACCINIA VIRUS (STRAIN WR) 37-82 262-302 391-442 PVC04_VACCC PROTEIN C4 SHOPE FIBROMA VIRUS (STRAIN KASZA) 175-223 374-408 PVC04_VACCV PROTEIN C4 VACCINIA VIRUS (STRAIN COPENHAGEN) 12-46 PVC04_VARV PROTEIN C4 VACCINIA VIRUS (STRAIN WR) 12-46 PVC05_SFVKA PROTEIN C4 VARIOLA VIRUS 12-46 PVC05_VACCC HYPOTHETICAL PROTEIN C5 SHOPE FIBROMA VIRUS (STRAIN KASZA) 82-125 PVC05_VACCV PROTEIN C5 VACCINIA VIRUS (STRAIN COPENHAGEN) 31-68 PVC05_VARV PROTEIN C5 VACCINIA VIRUS (STRAIN WR) 31-68 PVC08_SFVKA PROTEIN C5 VARIOLA VIRUS 32-70 73-121 PVC09_SFVKA HYPOTHETICAL PROTEIN C8 SHOPE FIBROMA VIRUS (STRAIN KASZA) 45-86 PVC09_VACCC HYPOTHETICAL PROTEIN C9 SHOPE FIBROMA VIRUS (STRAIN KASZA) 63-106 PVC09_VACCV PROTEIN C9 VACCINIA VIRUS (STRAIN COPENHAGEN) 82-116 168-226 289-325 575-612 PVC10_VACCC PROTEIN C9 VACCINIA VIRUS (STRAIN WR) 82-116 168-226 289-323 575-612 PVC10_VACCV PROTEIN C10 VACCINIA VIRUS (STRAIN COPENHAGEN) 136-180 PVC10_VARV PROTEIN C10 VACCINIA VIRUS (STRAIN WR) 136-176 PVC12_SFVKA PROTEIN C10 VARIOLA VIRUS 136-170 PVC13_SFVKA HYPOTHETICAL PROTEIN C12 SHOPE FIBROMA VIRUS (STRAIN KASZA) 2-36 PVC16_VACCC PROTEIN C13 SHOPE FIBROMA VIRUS (STRAIN KASZA) 3-66 137-182 189-240 PVC17_VACCC PROTEIN C16/B22 VACCINIA VIRUS (STRAIN COPENHAGEN) 142-176 PVC18_VACCC PROTEIN C17/B23 VACCINIA VIRUS (STRAIN COPENHAGEN) 100-155 325-359 PVC19_SFVKA PROTEIN C18/B24 VACCINIA VIRUS (STRAIN COPENHAGEN) 40-98 PVC19_VACCC PROTEIN C19 SHOPE FIBROMA VIRUS (STRAIN KASZA) 56-97 PVCAP_EBV PROTEIN C19/B25 VACCINIA VIRUS (STRAIN COPENHAGEN) 218-252 PVCAP_HCMVA MAJOR CAPSID PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 150-184 670-709 PVCAP_HSV11 MAJOR CAPSID PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 136-174 191-225 260-294 PVCAP_HSV6U MAJOR CAPSID PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 116-175 308-356 PVCAP_HSVEB MAJOR CAPSID PROTEIN HERPES SIMPLEX VIRUS 136-174 230-266 311-382 PVCAP_HSVSA MAJOR CAPSID PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 150-184 304-352 PVCAP_PRVIS MAJOR CAPSID PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 479-520 673-714 755-799 PVCAP_VZVD MAJOR CAPSID PROTEIN PSEUDORABIES VIRUS (STRAIN INDIANA S) 105-160 292-326 PVCG3_NPVAC MAJOR CAPSID PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 128-198 316-350 PVD05_FOWP1 DNA-BINDING PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 110-248 PVD05_VACCC 92.6 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 145-181 PVD05_VACCV PROTEIN D5 VACCINIA VIRUS (STRAIN COPENHAGEN) 123-157 PVD05_VARV PROTEIN D5 VACCINIA VIRUS (STRAIN WR) 123-157 PVD09_VACCC PROTEIN D5 VARIOLA VIRUS 123-157 PVD09_VACCV PROTEIN D9 VACCINIA VIRUS (STRAIN COPENHAGEN) 126-160 PVD09_VARV PROTEIN D9 VACCINIA VIRUS (STRAIN WR) 126-160 PVD10_FOWP1 PROTEIN D9 VARIOLA VIRUS 126-160 PVD10_SFVKA PROTEIN D10 FOWLPOX VIRUS (STRAIN FP-1) 65-99 188-222 PVD10_VARV PROTEIN D10 SHOPE FIBROMA VIRUS (STRAIN KASZA) 4-52 PVDBP_CAMVC PROTEIN D10 VARIOLA VIRUS 67-105 PVDBP_CAMVD DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 1-35 PVDBP_CAMVE DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 1-35 PVDBP_CAMVN DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 1-35 PVDBP_CAMVS DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 1-35 PVE02_VACCC DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 1-35 PVE02_VACCV PROTEIN E2 VACCINIA VIRUS (STRAIN COPENHAGEN) 282-336 PVE02_VARV PROTEIN E2 VACCINIA VIRUS (STRAIN WR) 282-336 PVE03_VACCC PROTEIN E2 VARIOLA VIRUS 282-336 PVE03_VACCV PROTEIN E3 VACCINIA VIRUS (STRAIN COPENHAGEN) 17-61 PVE03_VARV PROTEIN E3 VACCINIA VIRUS (STRAIN WR) 17-61 PVE05_VACCC PROTEIN E3 VARIOLA VIRUS 17-61 PVE05_VACCD PROTEIN E5 VACCINIA VIRUS (STRAIN COPENHAGEN) 28-93 PVE05_VACCV PROTEIN E5 VACCINIA VIRUS (STRAIN DAIREN 1) 38-103 PVE05_VARV PROTEIN E5 VACCINIA VIRUS (STRAIN WR) 38-103 PVE06_VACCC PROTEIN E5 VARIOLA VIRUS 38-103 PVE06_VACCV PROTEIN E6 VACCINIA VIRUS (STRAIN COPENHAGEN) 105-139 232-266 PVE06_VARV PROTEIN E6 VACCINIA VIRUS (STRAIN WR) 103-139 232-266 PVE18_NPVAC PROTEIN E6 VARIOLA VIRUS 105-139 367-401 PVE1_HPV1A EARLY 18.5 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 112-163 PVE1_HPV31 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 137-171 PVE1_HPV33 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 56-90 PVE1_HPV35 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 33-67 133-167 PVE1_HPV39 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 56-90 PVE1_HPV41 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 59-96 PVE1_HPV42 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 55-89 312-346 PVE1_HPV58 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 25-87 PVE1_HPV6B E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 33-67 119-174 PVE1_PAPVE E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 265-299 PVE26_NPVAC E1 PROTEIN EUROPEAN ELK PAPILLOMAVIRUS 176-210 PVE2_CRPVK EARLY 25.9 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 72-117 PVE2_HPV05 PROBABLE E2 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN 3-44 KANS PVE2_HPV08 PROBABLE E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5 5-57 276-310 342-383 437-471 PVE2_HPV16 PROBABLE E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 5-55 148-182 PVE2_HPV18 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 16 61-105 315-349 PVE2_HPV1A E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 65-100 PVE2_HPV2A E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 3-37 159-193 PVE2_HPV31 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 2A 13-47 159-193 PVE2_HPV33 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 61-105 PVE2_HPV35 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 63-101 297-331 PVE2_HPV39 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 62-106 158-192 PVE2_HPV41 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 74-110 323-357 PVE2_HPV47 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 6-54 PVE2_HPV51 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 5-55 148-182 PVE2_HPV57 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51 154-191 PVE2_HPV58 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 57 13-47 179-213 PVE2_HPV5B E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 2-36 PVE2_PAPVD PROBABLE E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 5-57 PVE2_PAPVE PROBABLE E2 PROTEIN DEER PAPILLOMAVIRUS 107-141 PVE2_PCPV1 PROBABLE E2 PROTEIN EUROPEAN ELK PAPILLOMAVIRUS 113-150 PVE2_RHPV1 E2 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 318-361 PVE39_NPVAC E2 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 62-106 307-341 PVE39_NPVOP EARLY 39 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 20-57 PVE4_HPV18 EARLY 39 KD PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 119-156 VIRUS PVE4_HPV41 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 42-86 PVE5_HPV5B PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 63-97 PVEF_GVTN PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 3-40 96-130 PVENV_BEV VIRAL ENHANCING FACTOR (VEP)(104 KD TRICHOPLUSIA NI GRANULOSIS VIRUS (TNGV) 681-719 GLYCOP PVENV_DHV11 ENVELOPE PROTEIN BERNE VIRUS (BEV) 195-229 PVENV_MCV1 ENVELOPE GLYCOPROTEIN PRECURSOR DHORI VIRUS (STRAIN INDIAN/1313/61)(DHO) 318-366 PVENV_MCV2 MAJOR ENVELOPE PROTEIN (43 KD PROTEIN) MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1 (MCVI) 232-286 (P43K) PVENV_THOGV MAJOR ENVELOPE PROTEIN (43 KD PROTEIN) MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2 (MCVII) 252-286 (P43K) PVENV_VACCC ENVELOPE GLYCOPROTEIN PRECURSOR TROGOTO VIRUS (THO) 313-354 (SURFACE PVENV_VACC1 MAJOR ENVELOPE PROTEIN (37 KD PROTEIN) VACCINIA VIRUS (STRAIN COPENHAGEN) 257-295 (P37K) PVENV_VACCP MAJOR ENVELOPE PROTEIN (37 KD PROTEIN) VACCINIA VIRUS (STRAIN IHD-J) 257-295 (P37K) PVENV_VACCV MAJOR ENVELOPE PROTEIN (37 KD PROTEIN) VACCINIA VIRUS (STRAIN L-ILVP) 257-295 (P37K) PVENV_VARV MAJOR ENVELOPE PROTEIN (37 KD PROTEIN) VACCINIA VIRUS (STRAIN WR) 257-295 (P37K) PVETS_NPVAC MAJOR ENVELOPE PROTEIN (37 KD PROTEIN) VARIOLA VIRUS 257-295 (P37K) PVF01_VACCC ECORI-T SITE PROTEIN ETS AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 1-53 PVF01_VACCV PROTEIN F1 VACCINIA VIRUS (STRAIN COPENHAGEN), AND VACCINIA 46-80 124-158 VIRUS PVF03_VACCC PROTEIN F1 (FRAGMENT) VACCINIA VIRUS (STRAIN WR) 46-80 124-158 PVF03_VACCV PROTEIN F3 VACCINIA VIRUS (STRAIN COPENHAGEN) 71-110 PVF05_VACCC PROTEIN F3 VACCINIA VIRUS (STRAIN WR) 71-110 PVF05_VACCP 36 KD MAJOR MEMBRANE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 81-129 282-320 PRECURSOR PVF05_VACCV 36 KD MAJOR MEMBRANE PROTEIN VACCINIA VIRUS (STRAIN L-IVP) 81-129 282-320 PRECURSOR PVF05_VARV 36 KD MAJOR MEMBRANE PROTEIN VACCINIA VIRUS (STRAIN WR) 81-129 283-321 PRECURSOR PVF06_VARV 36 KD MAJOR MEMBRANE PROTEIN VARIOLA VIRUS 81-122 281-322 PRECURSOR PVF11_VACCC PROTEIN F6 VARIOLA VIRUS 8-44 PVF11_VACCP PROTEIN F11 VACCINIA VIRUS (STRAIN COPENHAGEN) 217-258 269-315 PVF11_VARV PROTEIN F11 VACCINIA VIRUS (STRAIN L-IVP) 213-254 265-311 PVF12_VACCC PROTEIN F11 VARIOLA VIRUS 41-75 269-315 PVF12_VACCP PROTEIN F12 VACCINIA VIRUS (STRAIN COPENHAGEN) 1-67 102-143 199-236 350-388 544-581 PVF12_VARV PROTEIN F12 VACCINIA VIRUS (STRAIN L-IVP) 1-67 102-143 199-236 350-388 544-581 PVF16_VACCC PROTEIN F12 VARIOLA VIRUS 1-67 199-236 350-388 547-581 PVF16_VACCP PROTEIN F16 VACCINIA VIRUS (STRAIN COPENHAGEN) 155-194 PVF16_VARV PROTEIN F16 VACCINIA VIRUS (STRAIN L-IVP) 155-194 PVFP3_FOWPV PROTEIN F16 VARIOLA VIRUS 155-194 PVFP4_FOWPV PROTEIN FP3 FOWLPOX VIRUS 1-43 PVFP7_FOWPV PROTEIN P4 FOWLPOX VIRUS 139-173 239-273 PVFPL_FOWP1 PROTEIN FP7 FOWLPOX VIRUS 23-57 PVFUS_VACCV FPLEET PROTEIN (FRAGMENT) FOWLPOX VIRUS (STRAIN FP-1) 77-111 PVFUS_VACCV 14 KD FUSION PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 30-64 PVG01_HSV11 14 KD FUSION PROTEIN VACCINIA VIRUS (STRAIN WR) 30-64 PVG01_VACCC HYPOTHETICAL GENE 1 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 271-306 512-563 591-647 730-764 PVG01_VACCV PROTEIN G1 VACCINIA VIRUS (STRAIN COPENHAGEN) 301-339 PVG01_VARV PROTEIN G1 (FRAGMENT) VACCINIA VIRUS (STRAIN WR) 240-278 PVG03_HSVEB PROTEIN G1 VARIOLA VIRUS 301-339 PVG03_HSVEK GENE 3 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)(EHV-1) 143-177 PVG03_VARV GENE 3 PROTEIN (ORF L1) EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)(EHV-1) 143-177 PVG05_VACCC PROTEIN G3 VARIOL VIRUS 64-98 PVG05_VARV PROTEIN G5 VACCINIA VIRUS (STRAIN COPENHAGEN) 117-158 255-289 355-389 PVG06_HSV11 PROTEIN G5 VARIOLA VIRUS 117-158 255-289 355-389 PVG07_HSV11 HYPOTHETICAL GENE 6 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 61-109 PVG07_VACCC HYPOTHETICAL GENE 7 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 69-103 PVG07_VARV PROTEIN G7 VACCINIA VIRUS (STRAIN COPENHAGEN) 114-175 324-358 PVG09_VACCC PROTEIN G7 VARIOLA VIRUS 114-175 324-358 PVG09_VACCV PROTEIN F1 (PROTEIN G9) VACCINIA VIRUS (STRAIN COPENHAGEN) 304-338 PVG09_VARV PROTEIN F1 (PROTEIN G9)(FRAGMENT) VACCINIA VIRUS (STRAIN WR) 304-338 PVG10_HSV11 PROTEIN F1 (PROTEIN G9) VARIOLA VIRUS 304-338 PVG12_SPV1R HYPOTHETICAL GENE 10 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 63-97 PVG16_HSVSA GENE 12 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 11-45 PVG17_HSV11 HYPOTHETICAL GENE 16 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 58-95 PVG18_HSV11 HYPOTHETICAL GENE 17 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 92-129 177-211 PVGIL_AMEPV HYPOTHETICAL GENE 18 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 174-208 215-256 PVG1_SPV1R GIL PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 407-441 PVG1_SPV4 CAPSID PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 136-170 256-297 320-357 PVG22_HSV11 CAPSID PROTEIN SPIROPLASMA VIRUS 4 (SPV4) 287-321 PVG24_HSV11 HYPOTHETICAL GENE 22 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 117-158 437-629 660-892 899- 1055 PVG27_HSV11 HYPOTHETICAL GENE 24 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 7-72 74-108 PVG28_HSV11 HYPOTHETICAL GENE 27 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 164-219 PVG2R_AMEPV HYPOTHETICAL GENE 28 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 253-290 PVG2_SPV1R HYPOTHETICAL G2R PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 29-63 184-218 PVG2_SPV4 GENE 2 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 222-256 285-326 PVG33_HSVH GENE 2 PROTEIN SPIROPLASMA VIRUS 4 (SPV4) 255-310 PVG34_HSV11 HYPOTHETICAL GENE 33 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 149-183 PVG35_HSV11 HYPOTHETICAL GENE 34 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 345-379 PVG37_HSV11 HYPOTHETICAL GENE 35 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 17-90 PVG38_HSV11 HYPOTHETICAL GENE 37 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV 435-472 PVG39_HSV11 HYPOTHETICAL GENE 38 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 84-118 PVG3_SPV1R HYPOTHETICAL GENE 39 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 124-158 266-300 PVG3_SPV4 GENE 3 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 8-49 162-196 203-244 PVG43_HSV11 GENE 3 PROTEIN SPIROPLASMA VIRUS 4 (SPV4) 6-54 87-121 PVG45_HSVSA HYPOTHETICAL GENE 43 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 116-150 262-296 324-361 643-677 PVG46_HSV11 HYPOTHETICAL GENE 45 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 121-162 PVG48_HSV11 PROBABLE MAJOR GLYCOPROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 45-86 939- 1251- 1078 1321 PVG48_HSVSA HYPOTHETICAL GENE 48 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 169-207 PVG49_HSVSA HYPOTHETICAL GENE 48 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 360-417 611-666 733-767 PVG4R_AMEPV HYPOTHETICAL GENE 49 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 68-102 PVG4_SPV4 G4R PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 4-38 PVG51_HSV11 GENE 4 PROTEIN SPIROPLASMA VIRUS 4 (SPV4) 89-130 PVG51_HSVSA HYPOTHETICAL GENE 51 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 34-73 89-123 PVG53_HSV11 GENE 51 GLYCOPROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 29-70 123-157 162-196 PVG54_HSV11 HYPOTHETICAL GENE 53 PROTEIN ICTALURID HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 67-127 PVG55_HSV11 HYPOTHETICAL GENE 54 PROTEIN ICTALUIUD HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 355-396 PVG55_HSVSA HYPOTHETICAL GENE 55 PROTEIN ICTALURID HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 101-135 PVG56_HSV11 HYPOTHETICAL GENE 55 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 126-178 PVG59_HSV11 HYPOTHETICAL GENE 56 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 151-192 578-612 644-678 750-784 846-880 1111- 1145 PVG59_HSVSA HYPOTHETICAL GENE 59 MEMBRANE PROTEIN ICTALURID HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 10-72 89-123 PVG5_SPV1R GENE 59 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 169-209 PVG61_HSV11 GENE 5 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 65-103 PVG63_HSV11 HYPOTHETICAL GENE 61 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 265-299 PVG65_HSV11 HYPOTHETICAL GENE 63 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 546-584 PVG66_HSV11 HYPOTHETICAL GENE 65 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 805-839 1213- 1254 PVG67_HSV11 HYPOTHETICAL GENE 66 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 154-188 328-410 PVG68_HSV11 HYPOTHETICAL GENE 67 PROTEIN ICTALURID HERPESVIRUS I (CHANNEL CATFISH VIRUS)(CCV) 379-413 501-546 1321- 1478- 1369 1541 PVG72_HSV11 HYPOTHETICAL GENE 68 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 245-288 PVG75_HSV11 HYPOTHETICAL GENE 72 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 447-484 723-757 912-949 PVG8_SPVIR HYPOTHETICAL GENE 75 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 271-305 388-422 PVGF1_IBVB GENE 8 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 5-51 PVGH3_HCMVA F1 PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) 142-179 1233- 2119- 3388- 3475- 3517- 3761- (1 1267 2156 3424 3513 3556 3795 PVGL1_CVPR8 GLYCOPROTEIN H301 PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) PVGL2_CVBF E1 GLYCOPROTEIN PRECURSOR (MATRIX PORCINE RESPIRATORY CORONAVIRUS (STRAIN 86/137004/BRI 212-257 GLYCOP PVGL2_CVBL9 E2 GLYCOPROTEIN PRECURSOR (SPIKE BOVINE CORONAVIRUS (STRAIN F15 642-676 850-885 993- 1263- GLYCOPRO 1088 1305 PVGL2_CVBLY E2 GLYCOPROTEIN PRECURSOR (SPIKE BOVINE CORONAVIRUS (STRAIN L9) 850-885 993- 1263- GLYCOPRO 1109 1305 PVGL2_CVBM E2 GLYCOPROTEIN PRECURSOR (SPIKE BOVINE CORONAVIRUS (STRAIN LY-138) 642-676 850-885 993- 1263- GLYCOPRO 1109 1305 PVGL2_CVBQ E2 GLYCOPROTEIN PRECURSOR (SPIKE BOVINE CORONAVIRUS (STRAIN MEBUS 642-676 850-885 993- 1263- GLYCOPRO 1109 1305 PVGL2_CVBV E2 GLYCOPROTEIN PRECURSOR (SPIKE BOVINE CORONAVIRUS (STRAIN QUEBEC) 642-676 850-885 993- 1263- GLYCOPRO 1109 1305 PVGL2_CVH22 E2 GLYCOPROTEIN PRECURSOR (SPIKE BOVINE CORONAVIRUS (STRAIN VACCINE) 646-676 850-885 993- 1263- GLYCOPRO 1109 1305 PVGL2_CVM4 E2 GLYCOPROTEIN PRECURSOR (SPIKE HUMAN CORONAVIRUS (STRAIN 229E) 770-916 1055- GLYCOPRO 1112 PVGL2_CVMA5 E2 GLYCOPROTEIN PRECURSOR (SPIKE MURUNE CORONAVIRUS MHV (STRAIN WILD TYPE 4)(MHV-4) 643-684 1101- 1270- GLYCOPRO 1117 1315 PVGL2_CVMJC E2 GLYCOPROTEIN PRECURSOR (SPIKE MURINE CORONAVIRUS MHV (STRAIN A59) 591-632 949- 1218- GLYCOPRO 1079 1263 PVGL2_CVMJH E2 GLYCOPROTEIN PRECURSOR (SPIKE MURINE CORONAVIRUS MHV (STRAIN JHMV/VARIANT CL-2) 643-684 1001- 1270- GLYCOPRO 1117 1315 PVGL2_CVPFS E2 GLYCOPROTEIN PRECURSOR (SPIKE MURINE CORONAVIRUS MHV (STRAIN JHM) 503-543 860-976 1129- GLYCOPRO 1174 PVGL2_CVPM1 E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 69-110 448-482 692-733 889-923 1040- 1352- GLYCOPRO 1186 1389 PVGL2_CVPPR E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 69-110 448-482 692-733 889-923 1040- 1352- GLYCOPRO 1186 1389 PVGL2_CVPPU E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 69-110 448-482 692-733 889-923 1040- 1352- GLYCOPRO 1186 1389 PVGL2_CVPR8 E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 69-110 448-482 692-733 889-923 1040- 1352- GLYCOPRO 1186 1389 PVGL2_CVPRM E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE RESPIRATORY CORONAVIRUS (STRAIN 86/137004/BRIT 224-258 468-509 665-699 816-962 1128- GLYCOPRO 1165 PVGL2_CVPRT E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)(PRCV) 224-258 468-509 665-699 816-962 1128- GLYCOPRO 1165 PVGL2_EBV E2 GLYCOPROTEIN PRECURSOR (SPIKE PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 69-110 69-110 446-480 690-731 887-921 1038- 1350- GLYCOPRO 1038 1387 PVGL2_FIPV PROBABLE MEMBRANE GLYCOPROTEIN 68-102 PVGL2_IBV6 E2 GLYCOPROTEIN PRECURSOR FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 189-245 451-485 695-736 892-926 1043- 1355- 1189 1392 PVGL2_IBVB E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82) 791-905 1057- 1091 PVGL2_IBVD2 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) 437-478 772-904 1056- 1090 PVGL2_IBVK E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D274) 773-905 1057- 1091 PVGL2_IBVM E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 437-478 772-904 1056- 1090 PVGLB_HCMVA E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41) 437-478 772-904 1056- 1090 PVGLB_HCMVT GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 43-88 128-162 436-484 844-878 PVGLB_HSV11 GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 22-88 128-162 437-478 451-485 845-879 PVGLB_HSV1F GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 828-890 PVGLB_HSV1K GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)] 827-889 PVGLB_HSV1P GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 827-889 PVGLB_HSV23 GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN PATTON) 828-890 PVGLB_HSV2H GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 828-890 PVGLB_HSV2S GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 828-890 PVGLB_HSV6U GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN SA8) 817-871 PVGLB_HSVB1 GLYCOPROTEIN B HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 37-71 185-223 PVGLB_HSVB2 GLYCOPROTEIN 1 PRECURSOR BOVINE HERPESVIRUS TYPE 1 859-913 PVGLB_HSVBC GLYCOPROTEIN B-1 PRECURSOR BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) 440-474 848-902 PVGLB_HSVE1 GLYCOPROTEIN 1 PRECURSOR BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER) 863-900 PVGLB_HSVE4 GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A) 542-576 911-961 PVGLB_HSVEA GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 474-515 847-900 PVGLB_HSVEB GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) 542-576 911-961 PVGLB_HSVEL GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 542-576 911-961 PVGLB_HSVMD GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D) 542-576 910-960 PVGLB_HSVSA GLYCOPROTEIN B PRECURSOR MARAK'S DISEASE HERPESVIRUS (STRAIN RB-1B) 390-435 649-683 787-845 PVGLB_MCMVS GLYCOPROTEIN B PRECURSOR HERPESVIRUS SAIMIRI (STRAIN 11) 240-288 406-447 PVGLB_PRV1F GLYCOPROTEIN B PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 206-260 427-475 693-734 744-778 860-894 PVGLB_VZVD GLYCOPROTEIN GII PRECURSOR PSEUDORABIES VIRUS (STRAIN INDIANA-FUNKHAUSER/BECKE 847-881 PVGLC_HSV11 GLYCOPROTEIN B PRECURSOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 92-133 596-630 809-867 PVGLC_HSV1K GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 469-510 PVGLC_HSV2 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 469-510 PVGLC_HSV23 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 442-476 PVGLC_HSVBC GLYCOPROTEIN C PRECURSOR HEAPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 443-477 PVGLC_HSVEB GLYCOPROTEIN GIII PRECURSOR BOVINE HERPES VIRUS TYPE 1 (STRAIN COOPER) 235-269 PVGLC_HSVMB GLYCOPROTEIN C PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND (STRAIN 182-218 KEN PVGLC_HSVMD SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1) 63-97 PRECURSOR PVGLC_HSVMG SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B) 63-97 PRECURSOR PVGLC_HSVMM SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN GA) 62-96 PRECURSOR PVGLC_PRV1F SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN MD5) 63-97 PRECURSOR PVGLC_VZVD GLYCOPROTEIN GIII PRECURSOR PSEUDORABIES VIRUS (STRAIN INDIANA-FUNKHAUSER/BECKE 183-235 PVGLC_VZVS GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 280-321 PVGLD_HSVEA GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN SCOTT) 280-321 PVGLD_HSVEB GLYCOPROTEIN D PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) 89-123 PVGLD_HSVEK GLYCOPROTEIN D PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND (STRAIN 139-173 KEN PVGLE_HSV11 GLYCOPROTEIN D PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 139-173 PVGLE_HSV2 GLYCOPROTEIN E PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 111-145 PVGLF_BRSVA GLYCOPROTEIN E PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 111-159 PVGLF_BRSVC FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 146-202 504-545 PVGLF_BRSVR FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN 146-202 267-302 506-547 COPENHAGE PVGLF_CDVO FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94) 146-202 267-302 506-554 PVGLF_HRSV1 FUSION GLYCOPROTEIN PRECURSOR CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 228-297 340-381 568-602 PVGLF_HRSVA FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI 116-203 267-302 506-549 PVGLF_HRSVL FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2 116-202 267-302 506-549 PVGLF_HRSVR FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAI 116-202 267-302 506-547 PVGLF_MEASE FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSS-2) 116-202 267-302 506-549 PVGLF_MEAS1 FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN EDMONSTON) AND (STRAIN HALLE) 116-184 228-269 452-500 PVGLF_MEASY FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN IP-3-CA) 119-187 231-272 455-503 PVGLF_MUMP1 FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN YAMAGATA-1) 116-184 228-269 452-500 PVGLF_MUMPM FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN SBL-1) 20-54 103-179 235-272 447-502 PVGLF_MUMPR FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 20-54 103-179 235-272 447-502 PVGLF_MUMPS FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN RW) 20-54 103-179 235-272 447-502 PVGLF_NDVA FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN SBL) 20-54 103-179 235-272 447-502 PVGLF_NDVB FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 117-182 231-272 426-512 VICTORIA/32) PVGLF_NDVH3 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 122-182 231-272 426-517 PVGLF_NDVH4 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN HER/33) 117-182 231-272 426-517 PVGLF_NDV1 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47) 122-182 231-272 426-517 PVGLF_NDVL FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45) 133-182 230-272 426-517 PVGLF_NDVM FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN LAS/46) 133-182 231-272 426-517 PVGLF_NDVQ FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51) 117-182 231-272 426-512 PVGLF_NDVT FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66) 122-182 231-272 433-512 PVGLF_NDVTG FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN TEXAS) 117-182 231-272 426-517 PVGLF_NDVU FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48) 122-182 231-272 426-517 PVGLF_PHODV FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67) 122-182 231-272 426-512 PVGLF_PI1HC FUSION GLYCOPROTEIN PRECURSOR PHOCINE DISTEMPER VIRUS 29-63 197-266 309-350 533-581 PVGLF_PI2H FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 123-174 207-267 459-503 PVGLF_PI2HG FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS 93-183 477-528 PVGLF_PI2HT FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (STRAIN GREER) 93-183 477-528 PVGLF_PI3B FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 93-183 477-528 PVGLF_PI3H4 FUSION GLYCOPROTEIN PRECURSOR BOVINE PARAINFLUENZA 3 VIRUS 117-182 207-241 456-518 PVGLF_RINDK FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 117-182 207-241 462-532 PVGLF_RINDL FUSION GLYCOPROTEIN PRECURSOR RINDERPEST VIRUS (STRAIN KABETE O) 112-180 224-263 448-493 PVGLF_SEND5 FUSION GLYCOPROTEIN PRECURSOR RINDERPEST VIRUS (STRAIN L) 112-180 224-265 441-506 PVGLF_SENDF FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 127-188 211-271 463-533 PVGLF_SENDH FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN FUSHIMI) 127-188 211-271 463-533 PVGLF_SENDJ FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN HARRIS) 127-188 218-271 463-533 PVGLF_SENDZ FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN HVJ) 127-188 211-271 463-533 PVGLF_SV41 FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN Z) 127-188 211-271 463-533 PVGLF_SV5 FUSION GLYCOPROTEIN PRECURSOR SIMIAN VIRUS 41 96-186 454-508 PVGLF_TRTV FUSION GLYCOPROTEIN PRECURSOR SIMIAN VIRUS 5 (STRAIN W3) 103-171 241-275 451-487 PVGLG_BEFV FUSION GLYCOPROTEIN PRECURSOR TURKEY RHINOTRACHEITIS VIRUS ( 105-161 190-224 457-498 PVGLG_BRSVC SPIKE GLYCOPROTEIN PRECURSOR BOVINE EPHEMERAL FEVER VIRUS 506-612 PVGLG_HRSV1 MAJOR SURFACE GLYCOPROTEIN G BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN 30-70 104-138 COPENHAGE PVGLG_HRSV2 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI 30-81 PVGLG_HRSV3 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB642 30-85 PVGLG_HRSV4 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB1734 30-85 PVGLG_HRSV5 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB5857) 30-107 PVGLG_HRSV6 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB6190) 30-85 PVGLG_HRSV7 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB6256) 30-85 PVGLG_HRSV8 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB6614) 30-85 PVGLG_HRSVA MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI 30-81 PVGLG_HRSVL MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 30-67 PVGLG_HSVE4 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAI 25-85 PVGLG_SIGMA GLYCOPROTEIN G PRECURSOR EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 271-305 PVGLG_SYNV SPIKE GLYCOPROTEIN PRECURSOR SIGMA VIRUS 344-381 464-498 PVGLG_VHSV0 SPIKE GLYCOPROTEIN PRECURSOR SONCHUS YELLOW NET VIRUS 488-523 PVGLG_VSVIG SPIKE GLYCOPROTEIN PRECURSOR VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71) 363-397 PVGLH_EBV SPIKE GLYCOPROTEIN PRECURSOR VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN G 476-510 PVGLH_HCMVA GLYCOPROTEIN GP85 PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8) 53-87 160-201 336-380 653-694 PVGLH_HCMVT GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 103-137 270-311 693-741 PVGLH_HSV11 GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 102-136 692-740 PVGLH_HSV1E GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 447-481 PVGLH_HSV6G GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HEFM) 447-481 PVGLH_HSVBC GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 357-406 PVGLH_HSVE4 GLYCOPROTEIN H PRECURSOR BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER) 364-416 PVGLH_HSVEB GLYCOPROTEIN H PRECURSOR EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 334-379 414-455 PVGLH_HSVSA GLYCOPROTEIN H PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND (ISOLATE 327-372 407-448 HV PVGLH_MCMVS GLYCOPROTEIN H PRECURSOR HERPESVIRUS SAIMIRI (STRAIN 11) 32-66 374-453 664-712 PVGLH_PRVKA GLYCOPROTEIN H PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH 440-474 PVGLH_PRVN3 GLYCOPROTEIN H PRECURSOR PSEUDORADIES VIRUS (STRAIN KAPLAN) 226-260 PVGLH_PRVRJ GLYCOPROTEIN H PRECURSOR PSEUDORABIES VIRUS (STRAIN NIA-3) 226-260 PVGLH_VZVD GLYCOPROTEIN H PRECURSOR PSEUDORABIES VIRUS (STRAIN RICE) 226-260 PVGLI_HCMVA PROBABLE GLYCOPROTEIN H PRECURSOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 455-506 PVGLM_BUNGE IMMEDIATE EARLY GLYCOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 47-111 323-359 PRECURSOR PVGLM_BUNL7 M POLYPROTEIN PRECURSOR BUNYAVIRUS GERMISTON 512-567 685-737 1228- 1262 PVGLM_BUNSH M POLYPROTEIN PRECURSOR BUNYAVIRUS LA CROSSE (ISOLATE L74) 643-677 916-950 PVGLM_BUNYW M POLYPROTEIN PRECURSOR BUNYAVIRUS SNOWSHOE HARE 643-677 PVGLM_DUGBV M POLYPROTEIN PRECURSOR BUNYAMWERA VIRUS 340-374 504-563 905-939 PVGLM_HANTB M POLYPROTEIN PRECURSOR DUGBE VIRUS 937-989 1239- 1300 PVGLM_HANTH M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN B-1) 693-727 PVGLM_HANTL M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN HOJO) 72-106 PVGLM_HANTV M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN LEE) 72-106 PVGLM_INSV M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN 76-118) 72-106 PVGLM_PHV M POLYPROTEIN PRECURSOR IMPATIENS NECROTIC SPOT VIRUS 1067- 1101 PVGLM_PTPV M POLYPROTEIN PRECURSOR PROSPECT HILL VIRUS 73-111 PVGLM_SEOU8 M POLYPROTEIN PRECURSOR PUNTA TORO PHLEBOVIRUS 149-251 PVGLM_SEOUR M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN 80-39) 693-727 PVGLM_SEOUS M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN R22) 694-728 PVGLN_BEFV M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN SR-11) 693-730 PVGLP_BEV NONSTRUCTURAL GLYCOPROTEIN GNS BOVINE EPHEMERAL FEVER VIRUS 377-414 513-569 PRECURSO PVGLX_PRVR1 PEPLOMER GLYCOPROTEIN PRECURSOR BERNE VIRUS 43-82 90-124 622-656 1128- 1236 PVGLY_JUNIN SECRETED GLYCOPROTEIN GX PSEUDORABIES VIRUS (STRAIN RICE) 420-461 PVGLY_LASSG GLYCOPROTEIN POLYPROTEIN PRECURSOR JUNIN ARENAVIRUS 301-349 PVGLY_LASSJ GLYCOPROTEIN POLYPROTEIN PRECURSOR LASSA VIRUS (STRAIN GA391) 317-360 388-422 PVGLY_LYCVA GLYCOPROTEIN POLYPROTEIN PRECURSOR LASSA VIRUS (STRAIN JOSIAH) 318-361 389-423 PVGLY_LYCVW GLYCOPROTEIN POLYPROTEIN PRECURSOR LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN 333-367 395-432 ARMSTRON PVGLY_MOPEI GLYCOPROTEIN POLYPROTEIN PRECURSOR LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE) 124-158 333-367 395-432 PVGLY_PIARV GLYCOPROTEIN POLYPROTEIN PRECURSOR MOPEIA VIRUS 316-359 PVGLY_TACV GLYCOPROTEIN POLYPROTEIN PRECURSOR PICHINDE ARENAVIRUS 334-375 PVGLY_TACV5 GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS 315-363 PVGLY_TACV7 GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS (STRAIN V5) 303-351 332-416 PVGLY_TACVT GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS (STRAIN V7) 302-350 381-415 PVGNB_CPMV GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS (STRAIN TRVL 11598) 303-351 382-416 PVGNM_CPMV GENOME POLYPROTEIN B COWPEA MOSAIC VIRUS 835-869 PVGNM_CPSMV GENOME POLYPROTEIN M COWPEA MOSAIC VIRUS 160-201 PVGNM_RCMV GENOME POLYPROTEIN M COWPEA SEVERE MOSAIC VIRUS (STRAIN DG) 192-226 758-792 874-915 PVGP8_EBV GENOME POLYPROTEIN M RED CLOVER MOTTLE VIRUS 837-871 912-946 PVGP_EBOV PROBABLE MEMBRANE ANTIGEN GP85 EPSTEIN-BARR VIRUS (STRAIN B95-8) 94-149 PVGP_MABVM STRUCTURAL GLYCOPROTEIN PRECURSOR EBOLA VIRUS 280-321 334-368 469-503 PVGP_MABVP STRUCTURAL GLYCOPROTEIN PRECURSOR MARBURG VIRUS (STRAIN MUSOKE) 562-596 PVH02_VACCC STRUCTURAL GLYCOPROTEIN PRECURSOR MARBURG VIRUS (STRAIN POPP) 562-596 PVH02_VACCV LATE PROTEIN H2 VACCINIA VIRUS (STRAIN COPENHAGEN) 58-92 PVH02_VARV LATE PROTEIN H2 VACCINIA VIRUS (STRAIN WR) 58-94 PVH05_VACCC LATE PROTEIN H2 VARIOLA VIRUS 58-92 PVH05_VACCV PROTEIN H5 VACCINIA VIRUS (STRAIN COPENHAGEN) 118-185 PVH05_VARV PROTEIN H5 VACCINIA VIRUS (STRAIN WR) 118-185 PVHEL_LSV PROTEIN H5 VARIOLA VIRUS 136-203 PVHRP_VACCC PROBABLE HELICASE LILY SYMPTOMLESS VIRUS 126-160 PVHRP_VACCV HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 216-279 PV103_VACCC HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN WR) 216-279 PV103_VACCV PROTEIN 13 VACCINIA VIRUS (STRAIN COPENHAGEN) 150-193 210-244 PV103_VARV PROTEIN 13 VACCINIA VIRUS (STRAIN WR) 150-193 210-244 PV106_VACCV PROTEIN 13 VARIOLA VIRUS 150-193 210-244 PV106_VARV PROTEIN 16 VACCINIA VIRUS (STRAIN WR) 58-92 PV107_VARV PROTEIN 16 VARIOLA VIRUS 58-92 PV108_VACCC PROTEIN 17 VARIOLA VIRUS 373-407 PV108_VACCV PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN COPENHAGEN) 548-589 PV108_VARV PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN WR) 548-589 PV1E1_HCMVA PUTATIVE RNA HELICASE 18 VARIOLA VIRUS 548-589 PV1E1_HCMVT 55 KD IMMEDIATE-EARLY PROTEIN 1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 73-112 171-205 368-402 416-450 PV1E1_MCMVS 55 KD IMMEDIATE-EARLY PROTEIN 1 HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 78-112 171-205 383-402 416-450 PV1E2_NPVOP IMMEDIATE-EARLY PROTEIN 1 MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 244-297 PVIEN_NPVAC IMMEDIATE-EARLY PROTEIN IE-2 ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 94-128 305-395 VIRUS PVIF_CAEVC IMMEDIATE-EARLY REGULATORY PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 277-407 IE-N PVIF_FIVPE VIRION INFECTIVITY FACTOR CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) 23-92 PVIF_FIVSD VIRION INFECTIVITY FACTOR FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) 53-94 PVIF_HV1A2 VIRION INFECTIVITY FACTOR FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO) 32-80 PVIF_HV1B1 VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 1-42 62-96 ISOLATE PVIF_HV1B5 VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10, BRU, HXB2, 1-42 62-96 PV PVIF_HV1EL VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) 1-42 62-96 PVIF_HV1JR VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 1-42 62-96 PVIF_HV1MA VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) 1-42 62-96 PVIF_HV1MN VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) 2-36 PVIF_HV1NS VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 1-42 62-96 PVIF_HV1NA VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 1-42 62-96 ISOL PVIF_HVIND VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ISOLATE NIT-A) 1-42 62-96 PVIF_HV1OY VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) 1-42 62-96 PVIF_HV1RH VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) 1-42 62-96 PVIF_HV1RU VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) 1-42 62-96 PVIF_HV1Z2 VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN UGANDAN 1-42 FVOF_HV1Z6 VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 1-42 62-96 ISOLAT PVIF_HV2D2 VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6 ISOLATE) 1-42 62-96 PVIF_HV2NZ VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) 147-195 PVIF_HV2RO VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) 152-193 PVIF_OMVVS VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) 163-197 PVIF_SIVAI VIRION INFECTIVITY FACTOR OVINE LENTIVIRUS (STRAIN SA-OMVV) 44-114 PVIF_SIVAG VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 2-58 150-202 PVIF_SIVAI VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 17-58 PVIF_SIVAT VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR 2-36 143-187 PVIF_SIVCZ VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 20-58 150-195 PVIF_SIVGB VIRION INFECTIVITY FACTOR CHIMPANZEE IMMUNODEFICIENCY VIRUS 1-42 PVIMP_HSV11 VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 1-39 PVIMP_HSVEB PROBABLE INTEGRAL MEMBRANE PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 85-134 PVIMP_HSVSA PROBABLE INTEGRAL MEMBRANE PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 148-182 335-369 PVIMP_VZVD INTEGRAL MEMBRANE PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 80-129 PVINT_SSV1 PROBABLE INTEGRAL MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 107-151 155-189 267-301 PVJ01_VACCC PROBABLE INTEGRASE SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 85-130 138-172 PVJ01_VACCV PROTEIN J1 VACCINIA VIRUS (STRAIN COPENHAGEN) 22-56 PVJ01_VARV PROTEIN J1 VACCINIA VIRUS (STRAIN WR) 22-56 PVK03_VACCC PROTEIN J1 VARIOLA VIRUS 22-56 PVK03_VACCV PROTEIN K3 VACCINIA VIRUS (STRAIN COPENHAGEN) 38-82 PVK07_VACCV PROTEIN K3 VACCINIA VIRUS (STRAIN WR) 38-82 PVL02_VACCC PROTEIN K7 VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN) 115-149 PVL02_VACCV PROTEIN L2 VACCINIA VIRUS (STRAIN COPENHAGEN) 47-81 PVL02_VARV PROTEIN L2 VACCINIA VIRUS (STRAIN WR) 47-92 PVL1_CRPVK PROTEIN L2 VARIOLA VIRUS 47-81 PVL1_FPVL PROBABLE L1 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN 261-295 331-383 KANS PVL1_HPV05 PROBABLE L1 PROTEIN AVIAN PAPILLOMAVIRUS FPV-L 38-90 PVL1_HPV08 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5 355-393 PVL1_HPV1A PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 354-392 PVL1_HPV47 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 345-379 PVL1_PAPVD PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 353-391 PVL1_REOVD PROBABLE L1 PROTEIN DEER PAPILLOMAVIRUS 23-57 PVL2_HPV05 MAJOR CORE PROTEIN LAMBDA 1 REO VIRUS (TYPE 3/STRAIN DEARING) 94-142 437-471 PVL2_HPV08 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 341-375 PVL2_HPV16 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 354-392 PVL2_HPV1A PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 16 295-333 PVL2_HPV31 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 345-379 PVL2_HPV35 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 288-326 PVL2_HPV47 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 292-333 PVL2_HPV58 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 341-375 PVL2_HPV5B PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 293-327 PVL3_REOVD PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 341-375 PVL3_REOVJ MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 3/STRAIN DEARING) 107-148 1112- 1178 PVL3_REOVL MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 2/STRAIN D5/JONES) 1112- 1178 PVL96_IRV1 MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 1/STRAIN LANG) 107-148 331-365 1112- 1178 PVM01_VACCC L96 PROTEIN TIPULA IRIDESCENT VIRUS 146-180 198-236 PVM1_REOVL PROTEIN M1 VACCINIA VIRUS (STRAIN COPENHAGEN) 5-56 PVM21_REOVD MINOR VIRION STRUCTURAL PROTEIN MU-2 REOVIRUS (TYPE 1/STRAIN LANG) 287-321 PVM22_REOVD MAJOR VIRION STRUCTURAL PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 416-450 619-663 MU-1/MU-1C PVM2_REOVJ MAJOR VIRION STRUCTURAL PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 416-450 618-662 MU-1/MU-1C PVM2_REOVL MAJOR VIRION STRUCTURAL PROTEIN REOVIRUS (TYPE 2/STRAIN D5/JONES) 416-450 618-662 MU-1/MU-1C PVM3_REOVD MAJOR VIRION STRUCTURAL PROTEIN REOVIRUS (TYPE 1/STRAIN LANG) 416-450 618-662 MU-1/MU-1C PVMA2_BRSVA MAJOR NONSTRUCTURAL PROTEIN MU-NS REOVIRUS (TYPE 3/STRAIN DEARING) 135-190 337-371 523-558 618-690 PVMA2_HRSVA MATRIX GLYCOPROTEIN M2 BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 42-90 PVMA2_TRTV MATRIX GLYCOPROTEIN M2 HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 42-90 PVMAT_CDVO MATRIX GLYCOPROTEIN M2 TURKEY RHINOTRACHEITIS VIRUS 36-70 PVMAT_INCJJ MATRIX PROTEIN CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 193-234 PVMAT_NDVA MATRIX (M) PROTEIN INFLUENZA C VIRUS (STRAIN C/JJ/50) 73-114 151-208 PVMAT_NDVB MATRIX PROTEIN NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 310-358 VICTORIA/32) PVMAT_PI3B MATRIX PROTEIN NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 324-358 PVMAT_PI3H4 MATRIX PROTEIN BOVINE PARAINFLUENZA 3 VIRUS 99-133 204-252 PVMAT_RABVA MATRIX PROTEIN HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 99-133 204-252 PVMAT_RABVC MATRIX PROTEIN RABIES VIRUS (STRAIN AVO1) 69-103 PVMAT_RABVE MATRIX PROTEIN RABIES VIRUS (STRAIN CVS-11) 69-103 PVMAT_RABVN MATRIX PROTEIN RABIES VIRUS (STRAIN ERA) 69-103 PVMAT_RABVP MATRIX PROTEIN RABIES VIRUS (STRAIN NISHIGAHARA RCEH) 69-103 PVMAT_RABVS MATRIX PROTEIN RABIES VIRUS (STRAIN PV) 69-103 PVMAT_SYNV MATRIX PROTEIN RABIES VIRUS (STRAIN SAD B19) 69-103 PVMAT_VSVIG MATRIX PROTEIN SONCHUS YELLOW NET VIRUS 246-280 PVME1_CVBM MATRIX PROTEIN VESICULAR STONIATITIS VIRUS (SEROTYPE INDIANA/STRAIN G 198-232 PVME1_CVPFS E1 GLYCOPROTEIN BOVINE CORONAVIRUS (STRAIN MEBUS) 175-209 PVME1_CVPPU E1 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 98-146 212-257 PVME1_CVPRM E1 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 212-257 PVME1_CVTKE E1 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 212-257 PVME1_FIPV E1 GLYCOPROTEIN TURKEY ENTERIC CORONAVIRUS 28-62 175-209 PVME1_IBV6 E1 GLYCOPROTEIN PRECURSOR FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 212-257 PVME1_IBVB E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82) 21-55 177-218 PVME1_IBVB2 E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) 21-55 177-218 PVME1_IBVK E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE 21-55 177-218 M PVMEM_EBV E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 177-218 PVMP_CAMVC PROBABLE MEMBRANE PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 36-94 PVMP_CAMVD MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 187-234 270-324 PVMP_CAMVE MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 187-254 270-324 PVMP_CAMVN MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 187-254 270-324 PVMP_CAMVS MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 187-254 270-324 PVMP_CAMVW MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 187-254 270-324 PVMP_CERV MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN W260) 187-254 270-324 PVMP_FMVD MOVEMENT PROTEIN CARNATION ETCHED RING VIRUS 212-246 PVMP_SOCMV MOVEMENT PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 217-251 PVMSA_HPBDB MOVEMENT PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 76-118 PVMSA_HPBDC MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK ISOLATE 272-313 324-361 S PVMSA_HPBDU MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS (STRAIN CHINA) 271-312 323-360 PVMSA_HPBDW MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS 234-273 289-323 PVMSA_HPBGS MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK ISOLATE 272-313 324-361 S3 PVMSA_HPBHE MAJOR SURFACE ANTIGEN PRECURSOR GROUND SQUIRREL HEPATITIS VIRUS 210-244 PVMSA_WHV1 MAJOR SURFACE ANTIGEN PRECURSOR HERON HEPATITIS B VIRUS 294-328 PVMSA_WHV59 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 1 208-242 PVMSA_WHV7 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 59 213-247 PVMSA_WHV81 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 7 213-247 PVMIT1_DHV11 PROBABLE MAJOR SURFACE ANTIGEN WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE) 213-247 PRECURSOR PVMT1_IAANN MATRIX PROTEIN 1 DHORI VIRUS (STRAIN INDIAN/1313/61) 201-235 PVMT1_IABAN MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 92-126 174-222 PVMT1_IACAO MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79) 92-126 174-222 PVMT1_IAFOW MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82) 31-79 PVMT1_IAFPR MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50), AND (STR 92-126 174-222 PVMT1_IAFPW MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 92-126 174-222 VIRUS/ROSTOCK PVMF1_IALE1 MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 92-126 174-222 VIRUS/WEYBRID PVMT1_IALE2 MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 92-126 174-222 PVMT1_IAMAN MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 92-126 174-222 PVMT1_IAPOC MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 92-126 174-222 PVMIT_IAPUE MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/PORT CHALMERS/1/73) 92-126 174-222 PVMIT_IAUDO MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 92-126 174-222 PVMT1_IAWIL MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 92-126 174-222 PVMT1_IAZ11 MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33 92-126 174-222 PVMT1_INBAC MATRIX (M1) PROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30 92-126 174-222 PVMT1_INBAD MATRIX (M1) PROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 175-209 ADAPTE PVMT1_INBLE MATRIX (M1) PROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARDOR/1/66 [WILD-TYPE]) 175-209 PVMT1_INSBI MATRIX (M1) PROTEIN INFLUENZA B VIRUS (STRAIN B/LEE/50) 175-209 PVMT2_INBAC MATRIX (M1) PROTEIN INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 175-209 PVMT2_INBAD PROBABLE MATRIX (M2) PROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 132-184 ADAPTE PVMT2_INBLE PROBABLE MATRIX (M2) PROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]) 132-184 PVMT2_INBSI PROBABLE MATRIX (M2) PROTEIN INFLUENZA B VIRUS (STRAIN B/LEE/40) 132-184 PVMT8_MYXVL PROBABLE MATRIX (M2) PROTEIN INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 132-184 PVN01_VACCC M-T8 PROTEIN MYXOMA VIRUS (STRAIN LAUSANNE) 46-80 145-197 PVN01_VACCV PROTEIN N1 VACCINIA VIRUS (STRAIN COPENHAGEN) 64-112 PVN34_ROTBS PROTEIN N1 VACCINIA VIRUS (STRAIN WR) 64-112 PVN34_ROTPC NONSTRUCTURAL PROTEIN NS34 BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 64-169 PVNCA_AAV2 NONSTRUCTURAL PROTEIN NS34 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 64-117 121-169 PVNCA_RSV DNA REPLICATION PROTEIN ADENO-ASSOCIATED VIRUS 2 91-125 217-251 PVNCN_PAVBO MAJOR NONCAPSID PROTEIN RICE STRIPE VIRUS 129-163 PVNCS_ADVG PROBABLE NONCAPSID PROTEIN NP1 BOVINE PARVOVIRUS 221-255 PVNCS_AEDEV NONCAPSID PROTEIN NS-1 ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G) 19-60 270-304 PVNCS_FPV19 NONCAPSID PROTEIN NS-1 AEDES DENSONUCLEOSIS VIRUS (STRAIN GKV 002 002) 276-339 521-571 585-640 715-760 780-849 PVNCS_MEVA NONCAPSID PROTEIN NS-1 FELINE PANLEUKOPENIA VIRUS (STRAIN 193) 53-98 PVNCS_MUMIM NONCAPSID PROTEIN NS-1 MINK ENTERITIS VIRUS (STRAIN ABASHIRI) 53-98 PVNCS_MUMIV NONCAPSID PROTEIN NS-1 MURINE MINUTE VIRUS (STRAIN MVM1) 35-91 261-297 PVNCS_PAVBO NONCAPSID PROTEIN NS-1 MURINE MINUTE VIRUS 35-87 259-297 PVNCS_PAVCN PROBABLE NONCAPSID PROTEIN NS1 BOVINE PARVOVIRUS 181-222 PVNCS_PAVHB NONCAPSID PROTEIN NS-1 CANINE PARVOVIRUS (STRAIN N) 53-98 PVNCS_PAVHH NONCAPSID PROTEIN NS-1 HUMAN PARVOVIRUS B19 236-270 PVNCS_PAVPN NONCAPSID PROTEIN NS-1 HAMSTER PARVOVIRUS H1 35-76 259-297 PVNS1_BTV10 NONCAPSID PROTEIN NS-1 PORCINE PARVOVIRUS (STRAIN NADL-2) 24-77 169-210 309-346 PVNS1_BTV17 NONSTRUCTURAL PROTEIN NS1 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 107-141 PVNS1_BTV1A NONSTRUCTURAL PROTEIN NS1 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 107-141 PVNS1_BTV1S NONSTRUCTURAL PROTEIN NS1 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 107-141 PVNS1_BTV20 NONSTRUCTURAL PROTEIN NS1 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 107-141 PVNS1_EHDV2 NONSTRUCTURAL PROTEIN NS1 BLUETONGUE VIRUS (SEROTYPE 20/ISOLATE AUSTRALIA) 107-141 PVNS1_IAANN NONSTRUCTURAL PROTEIN NS1 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 2/STRAI 401-454 PVNS1_IACAO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 49-83 PVNS1_IACKG NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82 37-71 PVNS1_IACKJ NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 49-83 PVNS1_IADA2 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24) 46-80 PVNS1_IADE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 49-83 PVNS1_IADU3 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 46-80 PVNS1_IAFOM NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 46-80 PVNS1_IAFOW NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 49-83 PVNS1_IAFPR NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50), AND 49-83 (STRA PVNS1_IALE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 49-83 VIRUS/ROSTOCK PVNS1_IALEN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 49-83 PVNS1_IAMA6 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 49-83 PVNS1_IAMAN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76 49-83 PVNS1_IAMAO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 49-83 PVNS1_IAMYN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78 49-83 PVNS1_IAP10 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MYNAH/HANEDA-THA1/76) 46-80 PVNS1_IAP11 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79 49-83 PVNS1_IAP12 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79) 49-83 PVNS1_IAP13 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/268/78 49-83 PVNS1_IAPUE NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/358/79) 49-83 PVNS1_IATKB NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 49-83 PVNS1_IATKC NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM- 49-83 GLILIT/14 PVNS1_IATKR NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63) 49-83 PVNS1_IATRS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 49-83 PVNS1_IATRT NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61 46-80 PVNS1_IAZ11 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72) 49-83 PVNS1_INBAC NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/I5/30) 49-83 PVNS1_INBGA NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 143-177 ADAPTE PVNS1_INBHK NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/GA/86) 143-177 PVNS1_INBHT NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73), AND 143-177 (STRAIN PVNS1_INBID NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/HT/84) 143-177 PVNS1_INBLE NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/ID/86) 143-177 PVNS1_INBMD NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/LEE/40) 143-177 PVNS1_INBPA NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 143-177 PVNS1_INBRU NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/PA/79) 143-177 277-337 PVNS1_INBS1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/BRU/69) 139-173 PVNS1_INBSJ NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 143-177 PVNS1_INBVJ NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/SINGAPORE/64) 143-177 PVNS1_INBYA NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/VICTORIA/87) 143-177 PVNS2_AHSV9 NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73) 143-177 PVNS2_BTV17 NONSTRUCTURAL PROTEIN NS2 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 9) 67-101 PVNS2_BTV1X NONSTRUCTURAL PROTEIN NS2 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 203-237 PVNS2_CVMJH NONSTRUCTURAL PROTEIN NS2 BLUETONGUE VIRUS (SEROTYPE 10) 203-237 PVNS2_EHDV2 NONSTRUCTURAL PROTEIN NS2 MURINE CORONAVIRUS MHV (STRAIN JHM) 71-105 PVNS2_IAALA NONSTRUCTURAL PROTEIN NS2 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 2/STRAI 206-272 276-311 PVNS2_IAANA NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77), AND (STRAIN 14-93 A/U PVNS2_IAANN NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/ANAS ACUTA/PRIMORJE/695/76) 14-93 PVNS2_IACH1 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60), AND 14-93 (STRAIN PVNS2_IACKG NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 14-93 PVNS2_IACKJ NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 14-79 PVNS2_IADA2 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24) 11-90 PVNS2_IADE1 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 14-79 PVNS2_IADU3 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 11-90 PVNS2_IAFOM NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 11-90 PVNS2_IAFOW NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 14-93 PVNS2_IAFPR NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 14-93 PVNS2_IALE2 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 14-93 VIRUS/ROSTOCK PVNS2_IALEN NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 14-93 PVNS2_IAMA6 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 14-93 PVNS2_IAMA8 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76) 14-79 PVNS2_IAMAN NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/MALLAD/ALBERTA/827/78) 14-79 PVNS2_IAMAO NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 14-93 PVNS2_IAMYN NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78) 14-93 PVNS2_IAP10 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/MYNAH/HANEDA-THAI/76) 11-90 PVNS2_IAP11 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79) 14-93 PVNS2_IAP12 NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79) 14-79 PVNS2_IAPUE NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/268/78) 14-93 PVNS2_IATKB NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 14-93 PVNS2_IATKR NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM- 14-79 GLILIT/14 PVNS2_IATRS NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71 14-79 PVNS2_IAUSS NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61) 11-52 PVNS2_INBLE NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 14-93 PVNS2_INBYA NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/LEE/40 2-43 59-119 PVNS2_INCJJ NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73) 2-43 59-119 PVNS2_PVM NONSTRUCTURAL PROTEIN NS2 INFLUENZA C VIRUS (STRAIN C/JJ/50) 57-98 PVNS3_AHSV3 NONSTRUCTURAL PROTEIN 2 PNEUMONIA VIRUS OF MICE 70-104 PVNS3_AHSV9 NONSTRUCTURAL PROTEIN NS3 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 3) 44-78 166-215 PVNS3_BRD NONSTRUCTURAL PROTEIN NS3 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 9) 37-78 88-122 166-215 PVNS3_CVPFS NONSTRUCTURAL PROTEIN NS3 BROADHAVEN VIRUS 26-98 102-147 PVNS4_CVH22 NONSTRUCTURAL PROTEIN 3-1 PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S 13-51 PVNS4_RSV NONSTRUCTURAL PROTEIN 4 HUMAN CORONAVIRUS (STRAIN 229E) 11-52 PVNS7_CVCAE NONSTRUCTURAL PROTEIN NS4 RICE STRIPE VIRUS 2-40 PVNS7_CVFE3 NONSTRUCTURAL PROTEIN 7 CANINE ENTERIC CORONAVIRUS (STRAIN K378) 11-47 PVNS7_FIPV NONSTRUCTURAL PROTEIN 7 FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683) 1-42 PVNSC_CDVO NONSTRUCTURAL PROTEIN 7 FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 1-42 PVNSC_MEASE NONSTRUCTURAL PROTEIN C CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 50-84 95-152 PVNSC_MEASI NONSTRUCTURAL PROTEIN C MEASLES VIRUS (STRAIN EDMONSTON) 43-84 PVNSC_MEASY NONSTRUCTURAL PROTEIN C MEASLES VIRUS (STRAIN IP-3-CA) 43-84 PVNSC_PI1HB NONSTRUCTURAL PROTEIN C MEASLES VIRUS (STRAIN YAMAGATA-1) 43-84 PVNSC_PI1HC NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35) 133-167 PVNSC_PI1HD NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 133-167 PVNSC_PI1HE NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-5/73) 133-167 PVNSC_PI3H4 NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/83) 40-75 133-167 PVNSC_SEND6 NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 58-133 161-199 PVNSC_SENDH NONSTRUCTURAL PROTEIN C SENDAI VIRUS (STRAIN 6/94) 133-167 PVNSC_SENDZ NONSTRUCTURAL PROFEIN C SENDAI VIRUS (STRAIN HARRIS) 133-167 PVNSM_INSV NONSTRUCTURAL PROTEIN C SENDAI VIRUS (STRAIN Z) 133-167 PVNST_BUNGE NONSTRUCTURAL PROTEIN NS-M IMPATIENS NECROTIC SPOT VIRUS (INSV) 44-102 262-296 PVNST_BUNL7 NONSTRUCTURAL PROTEIN NS-S BUNYAVIRUS GERMISTON 34-75 PVNST_BUNLC NONSTRUCTURAL PROTEIN NS-S BUNYAVIRUS LA CROSSE (ISOLATE L74) 5-39 PVNST_MAGV NONSTRUCTURAL PROTEIN NS-S BUNYAVIRUS LA CROSSE 5-39 PVNST_TOSV NONSTRUCTURAL PROTEIN NS-S MAGUARI VIRUS 35-69 PVNST_UUK NONSTRUCTURAL PROTEIN NS-S TOSCANA VIRUS (TOS) 144-183 PVNUA_PRVKA NONSTRUCTURAL PROTEIN NS-S UUXUNIEMJ VIRUS (UUK) 139-173 PVNUC_DHV11 PROBABLE NUCLEAR ANTIGEN PSEUDORABIES VIRUS (STRAIN KAPLAN)(PRV) 1134- 1175 PVNUC_EBOV NUCLEOPROTEIN DHORI VIRUS (STRAIN INDIAN/1313/61)(DHO) 209-243 PVNUC_IAANA NUCLEOPROTEIN EBOLA VIRUS 191-225 227-261 329-369 PVNUC_IAANN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANAS ACUTA/PRIMORJE/695/76) 1-42 96-154 357-408 PVNUC_ABRA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 1-42 357-408 PVNUC_IABUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78) 1-42 357-408 PVNUC_IACAL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/HOKKAIDO/1/77) 1-42 96-154 357-408 PVNUC_IACKG NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78) 1-42 357-409 PVNUC_IACKP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 1-42 96-154 357-408 PVNUC_IADAU NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1/83) 1-42 96-154 357-408 PVNUC_IADBE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/AUSTRALIA/749/80) 1-42 96-154 357-408 PVNUC_IADCZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/BEIJING/1/78) 1-42 96-154 357-408 PVNUC_IADE1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/CZECHOSLOVAKIA/56) 1-42 96-154 360-408 PVNUC_IADE2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 1-42 96-154 357-408 PVNUC_IADHK NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/62) 1-42 96-154 357-408 PVNUC_IADM2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/HONG KONG/7/75) 1-42 96-154 357-408 PVNUC_IADMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74 1-42 96-154 357-408 PVNUC_IADNZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53) 1-42 96-154 357-408 PVNUC_IADU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/NEW ZEALAND/31/76) 1-42 96-154 357-408 PVNUC_IAEN5 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/2/60) 96-154 357-408 PVNUC_IAFOM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55) 1-42 357-409 PVNUC_IAFOW NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 1-42 357-409 PVNUC_IAFPD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 357-408 PVNUC_IAFPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/DOBSON/ 1-42 96-154 357-408 PVNUC_IAGRE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 1-42 96-154 360-408 VIRUS/ROSTOCK PVNUC_IAGU1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GREY TEAL/AUSTRALIA/2/79) 1-42 113-154 357-408 PVNUC_IAGU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/5/77) 1-42 357-408 PVNUC_IAGU3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 96-154 357-409 PVNUC_IAGU4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1824/78) 1-42 96-154 357-409 PVNUC_IAGUA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1815/79) 1-42 96-154 357-409 PVNUC_IAGUM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84) 1-42 96-154 357-409 PVNUC_IAGUN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MASSACHUSETTS/26/80) 1-42 96-154 357-409 PVNUC_IAH1C NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MINNESOTA/945/80) 1-42 96-154 357-409 PVNUC_IAHJ1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HICKOX/40) 1-42 357-409 PVNUC_IAHLO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/JILLIN/1/89) 1-42 96-154 357-408 PVNUC_IAHM1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 1-42 96-154 357-408 PVNUC_IAHO1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUTNE/MIAMI/1/63) 1-42 96-154 PVNUC_IAHO2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68) 1-42 357-409 PVNUC_IAHPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83) 1-42 357-409 PVNUC_IAHTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 96-154 357-408 PVNUC_IAK1E NUCLEOPROTEIN INFLUENZA A VIRUS 1-42 96-154 357-408 PVNUC_IALEN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 1-42 357-409 PVNUC_IAMAA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 1-42 96-154 357-408 PVNUC_IAMAN NUCLEOPROTEIN INFLUENZA A VIRUS 1-42 96-154 357-408 PVNUC_IAMIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 1-42 96- 154 337-408 PVNUC_IANEJ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 1-42 96-154 357-408 PVNUC_IANT6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NEW JERSEY/8/76) 1-42 96-154 357-408 PVNUC_IAOH1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NT/60/68) 1-42 357-409 PVNUC_IAPAR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/OHIO/4/83) 1-42 357-409 PVNUC_IAPUE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73) 1-42 96-154 357-408 PVNUC_IARUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 1-42 357-409 PVNUC_IASE0 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 1-42 96-154 357-408 JERSE PVNUC_IASH2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/1/80) 1-42 96-154 357-408 PVNUC_IASIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SHEARWATER/AUSTRALIA/72) 1-42 357-408 PVNUC_IATE1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 1-42 357-409 PVNUC_IATKN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEAL/ICELAND/29/80) 1-42 96-154 357-408 PVNUC_IATKO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/1661/81) 1-42 96-154 357-408 PVNUC_IATRS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/7732/66) 1-42 96-154 357-408 PVNUC_IATRT NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61) 1-42 96-154 360-408 PVNUC_IATX7 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72) 1-42 96-154 357-405 PVNUC_IAUDO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77) 1-42 357-409 PVNUC_IAUSS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 1-42 357-409 PVNUC_IAV16 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 1-42 357-408 PVNUC_IAWHN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68) 357-408 PVNUC_IAWHP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84) 1-42 96-154 357-409 PVNUC_IAWIL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/PACIFIC OCEAN/19/76) 1-42 96-154 357-408 PVNUC_IAWIS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 1-42 357-409 PVNUC_IAZ29 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88) 1-42 96-154 357-408 PVNUC_IAZ41 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/29/37) 1-42 96-154 357-408 PVNUC_JAZCA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/41/49) 1-42 96-154 357-408 PVNUC_IAZDA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/CAMBRIDGE/1/35) 1-42 357-409 PVNUC_IAZGE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/DANDONG/9/83) 1-42 357-409 PVNUC_IAZH1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/GERMANY/2/81) 1-42 96-154 357-408 PVNUC_IAZH3 NUCLEOPROTEIN INILUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/6/76) 1-42 357-409 PVNUC_IAZH4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 1-42 96-154 357-408 PVNUC_IAZ11 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/127/82) 1-42 96-154 357-408 PVNUC_IAZ12 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 1-42 96-154 357-408 PVNUC_IAZ13 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31) 1-42 96-154 357-408 PVNUC_IAZJ1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46) 1-42 96-154 357-408 PVNUC_IAZJ2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/437/76) 1-42 96-154 357-408 PVNUC_IAZJ3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/2/79) 1-42 96-154 357-408 PVNUC_IAZJ4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/141/81) 1-42 96-154 357-408 PVNUC_IAZJA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89) 1-42 96-154 357-408 PVNUC_IAZMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42) 1-42 96-154 357-408 PVNUC_IAZNE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54) 1-42 96-154 357-408 PVNUC_IAZOH NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/NETHERLANDS/12/85) 1-42 96-154 357-408 PVNUC_IAZON NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35) 1-42 96-154 357-408 PVNUC_IAZTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81) 1-42 96-154 357-408 PVNUC_IAZW1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77) 1-42 96-154 357-408 PVNUC_IAZW2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57) 1-42 96-154 357-408 PVNUC_IAZW2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57) 1-42 96-154 357-408 PVNUC_INBAA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/61) 1-42 96-154 357-408 PVNUC_INBAC NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/86) 75-142 480-514 PVNUC_INBAD NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 75-142 480-514 ADAPTE PVNUC_INBLE NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]) 75-145 480-514 PVNUC_INBS1 NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/LEE/40) 75-146 480-514 PVNUC_INCCA NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 75-142 480-514 PVNUC_MABVM NUCLEOPROTEIN INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 92-203 406-447 PVNUC_MABVP NUCLEOPROTEIN MARBURG VIRUS (STRAIN MUSOKE) 173-207 322-407 PVO01_VACCC NUCLEOPROTEIN MARBURG VIRUS (STRAIN POPP) 173-207 322-407 PVO01_VARV PROTEIN O1 VACCINIA VIRUS (STRAIN COPENHAGEN) 102-145 245-279 341-382 581-615 PVOR1_FXMV PROTEIN O1 VARIOLA VIRUS 102-145 245-279 341-382 581-615 PVOR1_NMR 152 KD PROTEIN FOXTAIL MOSAIC VIRUS 293-327 PVOR1_PMV 186 KD PROTEIN NARCISSUS MOSAIC VIRUS (NMV) 1519- 1575 PVOR1_PVMR 176 KD PROTEIN PAPAYA MOSAIC POTEXYIRUS (PMV) 1-39 299-337 1474- 1532 PVOR1_PVX 223 KD PROTEIN POTATO VIRUS M (STRAIN RUSSIAN)(PVM) 597-638 682-739 PVOR1_PVXCP 165 KD PROTEIN POTATO VIRUS X (PVX) 516-550 PVOR1_SMYEA 165 KD PROTEIN POTATO VIRUS X (STRAIN CP)(PVX) 510-547 PVOR1_WCMVM 150 KD PROTEIN STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS (SMYE 308-342 931-965 PVOR1_WCMVO 147 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN M)(WCMV) 1240- 1289 PVP10_NPVAC 147 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN O)(WCMV) 1240- 1289 PVP10_NPVOP P10 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 7-41 PVP10_RBSDV P10 PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 7-50 VIRUS PVP10_RGDV PROTEIN S10 RICE BLACK STREAKED DWARF VIRUS (RBSDV) 339-382 395-429 506-556 PVP10_WTV NONSTRUCTURAL PROTEIN PNS10 RICE GALL DWARF VIRUS (RGDV) 186-273 PVP11_RDV NONSTRUCTURAL PROTEIN PNS10 WOUND TUMOR VIRUS (WTV) 220-254 PVP11_WTV NONSTRUCTURAL PROTEIN PNS11 RICE DWARF VIRUS (RDV) 25-80 273-314 PVP12_RDV NONSTRUCTURAL PROTEIN PNS11 WOUND TUMOR VIRUS (WTV) 16-74 PVP12_WTV NONSTRUCTURAL PROTEIN P11 RICE DWARF VIRUS (RDV)) 140-181 PVP18_WTVNJ NONSTRUCTURAL PROTEIN PNS12 WOUND TUMOR VIRUS (WTV) 68-108 PVP19_HSVEB NONSTRUCTURAL PROTEIN PNS12 WOUND TUMOR VIRUS (STRAIN NJ)(WTV) 68-108 PVP23_HCMVA CAPSID ASSEMBLY AND DNA MATURATION EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1) 189-231 PROTE PVP23_HSV6U PROBABLE CAPSID PROTEIN VP23 HUMAN CYTOMEGALO VIRUS (STRAIN AD169) 41-82 146-180 PVP24_EBOV PROBABLE CAPSID PROTEIN VP23 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 47-81 PVP26_HSVEB MEMBRANE-ASSOCIATED STRUCTURAL EBOLA VIRUS 166-200 PROTEIN V PVP26_HSVSA CAPSID PROTEIN VP26 EQUINE HERPESYIRUS TYPE 1 (STRAIN AB4P)(EHV-1) 36-77 PVP26_NPVOP CAPSID PROTEIN VP26 HERPESVIRUS SAIMIRI (STRAIN 11) 41-78 PVP26_VZVD P26 PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 118-159 VIRUS PVP2_AHSV4 CAPSID PROTEIN VP26 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)(VZV) 47-81 PVP2_BTV10 OUTER CAPSID PROTEIN VP2 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCI 136-188 270-304 410-465 614-662 684-720 976- 1056 PVP2_BTV11 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 168-225 PVP2_BTV17 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 77-111 559-593 PVP2_BTV1S OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 77-111 168-209 PVP2_EHDV1 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 119-153 576-610 668-702 PVP2_ROTBR OUTER CAPSID PROTEIN VP2 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 72-106 247-301 405-453 461-495 895-929 (EHDV PVP2_ROTBU RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN RF) 2-94 482-516 523-557 607-655 675-754 PVP2_ROTHW RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN UK) 2-94 483-517 524-558 608-656 676-755 PVP2_ROTPC RNA-BINDING PROTEIN VP2 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 17-97 492-526 533-567 617-658 685-764 PVP2_ROTS1 RNA-BINDING PROTEIN VP2 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 1-50 52-99 194-228 515-551 599-643 705-746 PVP30_ASFE7 RNA-BINDING PROTEIN VP2 SIMIAN II ROTAVIRUS (STRAIN SA11) 36-96 483-517 608-656 680-755 PVP31_FRG3V PHOSPHOPROTEIN P30 AFRICAN SWINE FEVER VIRUS (STRAIN E-75)(ASFV) 29-89 PVP32_ASFB7 EARLY 31 KD PROTEIN FROG VIRUS 3 (FV3) 227-261 PVP35_EBOV PHOSPHOPROTEIN P32 AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)(ASFV) 29-89 PVP35_NPVAC POLYMERASE COMPLEX PROTEIN VP35 EBOLA VIRUS 80-119 PVP35_NPVBM EARLY 35 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 54-102 PVP35_VACCC EARLY 35 KD PROTEIN BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS (BMNPV) 54-102 224-258 PVP35_VACCP IMMUNODOMINANT ENVELOPE PROTEIN P35 VACCINIA VIRUS (STRAIN COPENHAGEN) 140-181 PVP35_VACCV IMMUNODOMINANT ENVELOPE PROTEIN P35 VACCINIA VIRUS (STRAIN L-IVP) 17-51 PVP35_VARV IMMUNODOMINANT ENVELOPE PROTEIN P35 VACCINIA VIRUS (STRAIN WR) 140-181 PVP3_AHSV4 IMMUNODOMINANT ENVELOPE PROTEIN P35 VARIOLA VIRUS 141-182 PVP3_BTV10 VP3 CORE PROTEIN AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCI 173-214 240-274 667-704 PVP3_BTV17 VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 214-255 853-894 PVP3_BTV1A VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 214-255 853-894 PVP3_EHDV1 VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA 214-255 853-894 PVP3_EHDVA VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 208-246 798-832 851-892 (EHDV PVP3_GFLV VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS 208-246 735-770 798-832 851-892 PVP3_RDV P3 PROTEIN GRAPEVINE FANLEAF VIRUS (GLFV) 96-133 PVP3_ROTPC MAJOR 114 KD STRUCTURAL PROTEIN RICE DWARF VIRUS (RDV) 299-337 817-872 PVP3_ROTS1 INNER CORE PROTEIN VP3 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 24-58 229-263 329-395 406-446 640-688 PVP40_EBV INNER CORE PROTEIN VP3 SIMIAN II ROTAVIRUS (STRAIN SA11) 26-76 244-278 331-365 451-492 662-696 PVP40_HSV11 CAPSID PROTEIN P40 EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 433-467 PVP40_HSVEB CAPSID PROTEIN P40 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 206-257 599-633 PVP40_ILTVT CAPSID PROTEIN P40 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1) 180-245 PVP40_SCMVC CAPSID PROTEIN P40 INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE 1-35 509-557 V88 PVP40_VZVD CAPSID PROTEIN P40 SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN) 457-498 PVP41_NPVAC CAPSID PROTEIN P40 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)(VZV) 167-246 486-522 PVP41_ROTS1 STRUCTURAL GLYCOPROTEIN GP41 AUTOGRAPHIA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 132-166 PVP42_R0TS1 OUTER CAPSID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11) 1-35 484-518 528-630 PVP4A_VACCC OUTER CAPSID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11) 1-35 237-518 531-646 PVP4A_VACCV MAJOR CORE PROTEIN P4A PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 355-359 718-763 794-828 857-891 PVP4A_VARV MAJOR CORE PROTEIN P4A PRECURSOR VACCINIA VIRUS (STRAIN WR) 262-296 355-359 718-763 794-828 857-891 PVP4B_FOWPV MAJOR CORE PROTEIN P4A PRECURSOR VARIOLA VIRUS 355-389 719-764 795-829 858-892 PVP4B_VACCC MAJOR CORE PROTEIN P4B PRECURSOR FOWLPOX VIRUS 131-172 296-330 PVP4B_VACCV MAJOR CORE PROTEIN P4B PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 3-37 125-163 249-283 PVP4B_VARV MAJOR CORE PROTEIN P4B PRECURSOR VACCINIA VIRUS (STRAIN WR) 3-37 125-163 249-283 PVP4_BTV10 MAJOR CORE PROTEIN P4B PRECURSOR VARIOLA VIRUS 3-37 125-163 249-283 PVP4_BTV11 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 579-617 619-653 PVP4_BTV13 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 569-607 609-643 PVP4_BTV2A VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 569-607 609-643 PVP4_NCDV VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 569-607 609-643 PVP4_RDV OUTER CAPSID PROTEIN VP4 NEBRASKA CALF DIARRHEA VIRUS (STRAIN NCDV-LINCOLN) 484-518 528-630 PVP4_ROTB4 NONSTRUCTURAL PROTEIN PNS4 RICE DWARF VIRUS (RDV) 388-437 444-478 627-679 PVP4_ROTBC OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641) 1-35 112-146 338-379 494-518 528-653 PVP4_ROTBU OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (STRAIN C486) 1-35 484-518 528-630 PVP4_ROTEH OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (STRAIN UK) 1-35 112-146 338-379 484-518 528-653 PVP4_ROTG1 OUTER CAPSID PROTEIN VP4 EQUINE ROTAVIRUS (STRAIN H-2) 1-35 112-146 227-274 345-379 484-518 528-653 PVP4_ROTH1 OUTER CAPSID PROTEIN VP4 ROTAVIRUS (GROUP B/STRAIN IDIR) 117-151 476-519 PVP4_ROTH5 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076) 1-35 236-273 337-378 483-517 530-645 PVP4_ROTH6 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5) 1-35 236-273 337-378 483-517 527-652 PVP4_ROTHD OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M) 1-35 112-146 237-274 338-379 484-518 531-646 PVP4_ROTHJ OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 1-35 236-273 337-378 483-517 527-652 PVP4_ROTHK OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN K8) 1-35 237-274 345-379 484-518 528-588 PVP4_ROTHL OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN KU) 1-35 337-378 483-517 527-652 PVP4_ROTHM OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN L26) 1-35 236-273 337-378 483-517 527-652 PVP4_ROTHN OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37) 1-35 337-378 483-517 530-645 PVP4_ROTHP OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13) 1-35 237-274 338-379 484-518 531-645 PVP4_ROTHR OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P) 1-35 236-273 337-378 483-517 527-652 PVP4_ROTHT OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV) 1-38 91-146 227-274 PVP4_ROTHV OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3) 1-35 236-273 337-378 483-517 530-644 PVP4_ROTHW OUTER CASPID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70 1-35 237-273 344-378 483-517 527-652 PVP4_ROTP5 OUTER CASPID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 1-35 237-273 344-378 483-517 527-652 PVP4_ROTPC OUTER CASPID PROTEIN VP4 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 112-146 484-518 528-629 PVP4_ROTPG OUTER CASPID PROTEIN VP4 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 6-40 127-161 241-278 293-334 580-614 PVP4_ROTPY OUTER CASPID PROTEIN VP4 PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 1-35 236-273 337-378 483-517 530-564 569-638 PVP4_ROTRH OUTER CASPID PROTEIN VP4 PORCINE ROTAVIRUS (STRAIN YM) 1-35 112-146 237-274 484-518 528-629 PVP4_ROTSF OUTER CASPID PROTEIN VP4 RHESUS ROTAVIRUS 1-38 112-146 237-274 338-379 484-522 531-646 PVP4_ROTSS OUTER CASPID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11-FEM) 1-35 484-518 528-630 PVP4_WTV DE OUTER CASPID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11-SEM) 1-35 237-274 343-379 484-518 531-646 PVP5_AHSV4 NONSTRUCTURAL PROTEIN PN54 WOUND TUMOR VIRUS (WTV) 28-62 565-621 PVP5_BRD OUTER CASPID PROTEIN VP5 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCI 7-58 113-229 PVP5_BTV10 OUTER CASPID PROTEIN VP5 BROADHAVEN VIRUS (BRD) 45-86 98-226 PVP5_BTV11 OUTER CASPID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 30/ISOLATE USA) 14-58 92-150 154-222 404-438 PVP5_BTV13 OUTER CASPID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 14-58 92-150 154-222 404-445 PVP5_BTV1A OUTER CASPID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 14-58 154-222 404-438 PVP5_BTV1S OUTER CASPID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 34-58 92-143 148-222 404-438 PVP5_BTV2A OUTER CASPID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 14-58 92-143 148-222 404-438 PVP5_EHDV1 OUTER CASPID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 14-58 92-222 404-438 PVP5_RDV OUTER CASPID PROTEIN VP5 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 24-58 92-126 163-233 291-325 399-433 (EHDV PVP5_WTV OUTER COAT PROTEIN P5 RICE DWARF VIRUS (RDV) 38-86 95-136 550-594 PVP61_BTV10 OUTER COAT PROTEIN P5 WOUND TUMOR VIRUS (WTV) 434-503 547-581 751-798 PVP61_MRDV VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 163-215 PVP61_NPVAC PROBABLE NONSTRUCTURAL 41.0 KD MAIZE ROUGH DWARF VIRUS (MRDV) 128-202 PROTEIN PVP62_BTV10 61 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 29-96 351-386 PVP64_NPVOP VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 47-88 159-207 214-251 PVP67_NPVAC MAJOR ENVELOPE GLYCOPROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 296-361 431-479 PRECURSOR VIRUS PVP67_NPVGM MAJOR ENVELOPE GLYCOPROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 44-78 289-364 443-477 PRECURSOR PVP6_BTV11 MAJOR ENVELOPE GLYCOPROTEIN GALLERIA MELLONELLA NUCLEAR POLYHEDROSIS VIRUS 206-281 (GMN PVP6_BTV13 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 159-211 PVP6_BTV17 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 159-211 PVP6_BTV1S VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 68-102 159-211 PVP6_BTV2A VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 12-78 163-211 PVP6_RDV VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 44-78 135-187 PVP6_WTV STRUCTURAL PROTEIN P6 RICE DWARF VIRUS (RDV) 150-191 296-344 360-401 PVP6_WTVNJ STRUCTURAL PROTEIN P6 WOUND TUMOR VIRUS (WTV) 144-178 286-334 400-434 PVP74_NPVAC STRUCTURAL PROTEIN P6 WOUND TUMOR VIRUS (STRAIN NJ)(WTV) 144-178 286-334 PVP74_NPVCF P74 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 387-456 PVP75_HSVSA P74 PROTEIN CHORISTONEURA FUMIFERANA NUCLEAR POLYHEDROSIS 385-453 VIRU PVP79_NPVAC PROBABLE MEMBRANE ANTIGEN 75 HERPESVIRUS SAIMIRI (STRAIN 11) 50-99 163-211 931-984 PVP7_BTV10 79 KD PROTEIN AUTOGRAPIIA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 44-78 363-397 406-440 PVP7_BTV13 VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA), (SEROTYPE 184-228 PVP7_BTV17 VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 201-235 PVP7_BTV1A VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 184-228 PVP7_BTV1S VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 184-235 PVP7_BTV2A VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 184-228 PVP7_EHDV1 VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 184-228 PVP7_RDV VP7 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 16-50 134-178 (EHDV PVP7_WTV NONSTRUCTURAL PROTEIN PNS7 RICE DWARF VIRUS (RDV) 47-95 172-255 PVP80_NPVAC NONSTRUCTURAL PROTEIN PNS7 WOUND TUMOR VIRUS (WTV) 47-84 195-243 438-493 PVP87_NPVOP CASPID PROTEIN P80 AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 7-51 99-142 156-204 221-298 PVP8_BTV10 CASPID PROTEIN P87 ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 80-162 410-451 VIRUS PVP8_BTV11 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 54-102 185-219 PVP8_BTV13 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 54-102 185-219 PVP8_BTV17 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 54-102 185-219 PVP8_BTV1A NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 54-102 185-219 PVP8_BTV1S NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 54-102 185-219 PVP8_BTV2A NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 54-102 185-219 PVP8_FOWPV NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 54-102 185-219 PVP9_RDV STRUCTURAL PROTEIN VP8 PRECURSOR FOWLPOX VIRUS 193-245 PVP9_WTV NONSTRUCTURAL PROTEIN PNS9 RICE DWARF VIRUS (RDV) 13-47 186-226 PVP9_WTVNJ STRUCTURAL PROTEIN P9 WOUND TUMOR VIRUS (WTV) 140-212 PVPG_BYDV1 STRUCTURAL PROTEIN P9 WOUND TUMOR VIRUS (STRAIN NJ)(WTV) 140-212 PVPHE_NPVAC PUTATIVE GENOME-LINKED PROTEIN BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PS1)(BYDV) 25-59 PRECURSOR PVPHE_NEVOP 29 KD POLYHEDRAL ENVELOPE PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 146-223 PVPR_SIVML 32 KD POLYHEDRAL ENVELOPE PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 131-201 206-265 VIRUS PVPU_HV1A2 VPR PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE)(SIV-MAC) 78-115 PVPU_HV1B1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 1-38 ISOLATE PVPU_HV1B8 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE)(HI 4-72 PVPU_HV1BN VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE)(HIV 5-72 PVPU_HV1BR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE) 4-59 (H PVPU_HV1C4 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)(HIV 4-72 PVPU_HV1EL VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE) 3-40 PVPU_HV1H2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 6-40 (HIV- PVPU_HV1J3 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) 5-72 (HI PVPU_HV1JR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 2-50 (HIV- PVPU_HV1MA VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)(II 4-59 PVPU_HV1ND VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)(HI 5-50 PVPU_HV1PV VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE)(HI 4-40 PVPU_HV1RH VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE)(HI 4-72 PVPU_HV1S1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE)( 1-39 PVPU_HV1Z2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162 ISOLATE) 4-59 (HI PVPU_SIVCZ VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 6-40 ISOLAT PVPX_HV2D2 VPU PROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))(CIV) 21-78 PVRNA_BSMV VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) 42-85 (H PVS05_ROTS1 ALPHA-A PROTEIN BARLEY STRIPE MOSAIC VIRUS (BSMV) 40-74 857-898 PVS06_ROTBS NONSTRUCTURAL PROTEIN NCVP2 SIMIAN II ROTAVIRUS (STRAIN SA11) 248-287 PVS06_ROTGA VP6 PROTEIN BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 6-44 PVS06_ROTG1 VP6 PROTEIN ROTAVIRUS (GROUP B/STRAIN ADRV)(ADULT DIARRHEA ROTA 69-144 PVS06_ROTHC VP6 PROTEIN ROTAVIRUS (GROUP B/STRAIN IDIR) 24-58 64-103 PVS06_ROTPC VP6 PROTEIN HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL) 9-43 PVS07_ROTBJ VP6 PROTEIN PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 9-43 PVS07_ROTBU GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN KN-4) 2-36 282-320 PVS07_ROTP5 NONSTRUCTURAL PROTEIN NCVP3 BOVINE ROTAVIRUS (STRAIN UK) 88-153 199-236 PVS07_ROTS1 NONSTRUCTURAL PROTEIN NCVP3 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 88-162 202-256 PVS08_ROTBU NONSTRUCTURAL PROTEIN NCVP3 SIMIAN II ROTAVIRUS (STRAIN SA11) 88-153 199-236 PVS08_ROTS1 NONSTRUCTURAL PROTEIN NS2/VP9 BOVINE ROTAVIRUS (STRAIN UK) 2-70 75-119 160-226 PVS09_ROTB4 NONSTRUCTURAL PROTEIN NCVP4 SIMIAN II ROTAVIRUS (STRAIN SA11) 2-46 144-212 217-255 PVS09_ROTB5 GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641) 2-54 282-320 PVS09_ROTB6 GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN A5) 2-43 282-320 PVS09_ROTBA GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN 61A) 2-54 282-320 PVS09_ROTBB GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN A44) 2-54 282-320 PVS09_ROTBK GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 10/STRAIN B223) 2-54 282-320 PVS09_ROTBN GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN KK3) 2-54 282-320 PVS09_ROTBT GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN NCDV) 2-54 282-320 PVS09_ROTBU GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 1/STRAIN T449) 2-43 282-320 PVS09_ROTC7 GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN UK) 2-54 282-320 PVS09_ROTEL GLYCOPROTEIN VP7 CHICKEN ROTAVIRUS A (SEROTYPE 7/STRAIN CH2) 285-326 PVS09_ROTGA GLYCOPROTEIN VP7 EQUINE ROTAVIRUS (STRAIN L338) 282-320 PVS09_ROTG1 GLYCOPROTEIN VP7 PRECURSOR ROTAVIRUS (GROUP B/STRAIN ADRV)(ADULT DIARRHEA ROTA 43-77 PVS09_ROTH4 GLYCOPROTEIN VP7 PRECURSOR ROTAVIRUS (GROUP B/STRAIN IDIR) 45-79 PVS09_ROTH9 GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4) 2-43 282-320 PVS09_ROTHA GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE G/STRAIN RK9) 282-320 PVS09_ROTHB GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5) 282-320 PVS09_ROTHD GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37) 2-43 282-320 PVS09_ROTHH GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 282-320 PVS09_ROTHL GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126) 282-320 PVS09_ROTHM GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (STRAIN L26) 1-35 282-320 PVS09_ROTHO GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37) 2-43 282-320 PVS09_ROTHP GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO AND STRAIN D) 2-43 282-320 PVS09_ROTHR GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P) 282-320 PVS09_ROTHS GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV) 282-320 PVS09_ROTHT GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2) 282-320 PVS09_ROTHV GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3) 18-56 208-242 282-320 PVS09_ROTHW GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70) 18-56 208-242 282-320 PVS09_ROTP2 GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 2-43 282-320 PVS09_ROTP3 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN AT/76) 282-320 PVS09_ROTP4 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN CRW-8) 282-320 PVS09_ROTP5 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN OSU) 2-56 208-242 282-320 PVS09_ROTP6 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 282-320 PVS09_ROTPB GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN TFR-41) 282-320 PVS09_ROTPK GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BEN-144) 18-56 208-242 282-320 PVS09_ROTPM GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (STRAIN K) 18-56 282-320 PVS09_ROTPY GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BMI-1) 18-56 208-242 282-320 PVS09_ROTRH GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (STRAIN YM) 1-35 282-320 PVS09_ROTS1 GLYCOPROTEIN VP7 RHESUS ROTAVIRUS 282-320 PVS10_ROTBN GLYCOPROTEIN VP7 SIMIAN II ROTAVIRUS (STRAIN SA11) 282-320 PVS10_ROTBS NONSTRUCTURAL GLYCOPROTEIN NCVP5 BOVINE ROTAVIRUS (STRAIN NCDV) 73-161 PVS10_ROTBU MINOR OUTER CASPID PROTEIN BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 17-58 PVS10_ROTH2 NONSTRUCTURAL GLYCOPROTEIN NCVP5 BOVINE ROTAVIRUS (STRAIN UK) 73-161 PSV10_ROTH7 NONSTRUCTURAL GLYCOPROTEIN NCVP5 HUMAN ROTAVIRUS (STRAIN A28) 73-162 PVS10_ROTH8 NONSTRUCTURAL GLYCOPROTEIN NCVP5 HUMAN ROTAVIRUS (STRAIN A64/CLONE 2) 73-162 PVS10_ROTHC NONSTRUCTURAL GLYCOPROTEIN NCVP5 HUMAN ROTAVIRUS (STRAIN A64/CLONE 6) 73-162 PVS10_ROTHW MINOR OUTER CASPID PROTEIN HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL) 121-158 PVS10_ROTS1 NONSTRUCTURAL GLYCOPROTEIN NCVP5 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 73-136 PVS11_ROTGA NONSTRUCTURAL GLYCOPROTEIN NCVP5 SIMIAN II ROTAVIRUS (STRAIN SA11) 73-162 PVS11_ROTG1 NONSTRUCTURAL PROTEIN ROTAVIRUS (GROUP B/STRAIN ADRV)(ADULT DIARRHEA ROTA 24-65 96-130 PVS11_ROTH5 NONSTRUCTURAL PROTEIN ROTAVIRUS (GROUP B/STRAIN IDIR) 9-68 PVS11_ROTH6 MINOR OUTER CASPID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5) 100-145 PVS11_ROTHB MINOR OUTER CASPID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M) 107-144 PVS11_ROTHD MINOR OUTER CASPID PROTEIN HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37) 107-144 PVS11_ROTHW MINOR OUTER CASPID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 111-145 PVS11_ROTS1 MINOR OUTER CASPID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 111-145 PVS48_TBRVC MINOR OUTER CASPID PROTEIN SIMIAN II ROTAVIRUS (STRAIN SA1) 111-145 PVSH_MUMP1 SATELLITE RNA 48 KD PROTEIN TOMATO BLACK RING VIRUS (STRAIN C)(TBRV) 217-265 PVSH_MUMP2 SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN SBL-1), AND MUMPS VIRUS (STRAIN 9-46 SBL PVSH_MUMP4 SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN EDINGBURGH 2), AND (STRAIN EDINGB 13-47 PVSH_MUMPA SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN EDINGBURGH 4) 13-47 PVSH_MUMPB SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN MATSUYAMA) 13-51 PVSH_MUMPE SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN BELFAST) 13-52 PVSH_MUMPJ SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN ENDERS) 9-46 PVSH_MUMPK SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN JERYL-LYNN) 9-46 PVSH_MUMPL SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN KILHAM) 9-51 PVSH_MUMPM SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN BRISTOL 1) 13-55 PVSH_MUMPT SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 17-51 PVSH_MUMPU SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN TAKAHASHI) 13-47 PVS11_REOVD SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN URABE VACCINE AM9) 13-47 PVS11_REOVJ SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 3/STRAIN DEARING) 8-122 127-175 222-259 PVS11_REOVL SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 2/STRAIN DS/JONES) 1-178 PVS12_REOVD SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 1/STRAIN LANG) 3-107 112-198 PVS12_REOVL SIGMA 2 PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 350-384 PVS1S_REOVD SIGMA 2 PROTEIN REOVIRUS (TYPE 1/STRAIN LANG) 350-384 PVS1S_REOVJ SIGMA 1-S PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 85-119 PVST2_HEVBU SIGMA 1-S PROTEIN REOVIRUS (TYPE 2/STRAIN DS/JONES) 7-45 PVST2_HEVME STRUCTURAL PROTEIN 2 PRECURSOR HEPATITIS B VIRUS (STRAIN BURMA)(HEV) 318-352 PVST2_HEVMY STRUCTURAL PROTEIN 2 PRECURSOR HEPATITIS B VIRUS (STRAIN MEXICO)(HEV) 317-351 PVST2_HEVPA STRUCTURAL PROTEIN 2 PRECURSOR HEPATITIS B VIRUS (STRAIN MYANMAR)(HEV) 318-352 PVST2_HEVRH STRUCTURAL PROTEIN 2 PRECURSOR HEPATITIS B VIRUS (STRAIN PAKISTAN)(HEV) 318-352 PVT3A_CAPV1 STRUCTURAL PROTEIN 2 HEPATITIS B VIRUS (ISOLATE RHESUS)(HEV) 186-220 PVT4_CAPV1 PROTEIN T3A CAPRIPOXVIRUS (STRAIN INS-1) 120-158 PVT4_CAPVK T4 PROTEIN CAPRIPOXVIRUS (STRAIN INS-1) 86-120 PVTER_EBV T4 PROTEIN CAPRIPOXVIRUS (STRAIN KS-1) 86-120 PVTER_HCMVA PROBABLE DNA PACKAGING PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 235-290 595-629 PVTER_HSV6U PROBABLE DNA PACKAGING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 417-451 617-658 PVTER_HSVEB PROBABLE DNA PACKAGING PROTEIN HERPES SINIPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 468-502 PVTER_HSV11 PROBABLE DNA PACKAGING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1) 11-45 PVTER_HSVSA PROBABLE DNA PACKAGING PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 98-136 698-744 PVTER_VZVD PROBABLE DNA PACKAGING PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 226-267 PVV_P14HA PROBABLE DNA PACKAGING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)(VZV) 588-622 PVY1_SEND6 V PROTEIN HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)(PIV-4A) 4-38 PY101_SSV1 Y1 PROTEIN SENDAI VIRUS (STRAIN 6/94) 104-138 PY108_SSV1 HYPOTHETICAL 10.1 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 16-80 PY110_SSV1 HYPOTHETICAL 10.8 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 4-65 PY119_SSV1 HYPOTHETICAL 11.0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 55-59 PY11K_TYDVA HYPOTHETICAL 11.9 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 30-96 PY12K_PCVC6 HYPOTHETICAL 11.2 KD PROTEIN TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA)(TYDV) 53-87 PY12K_PCVF9 HYPOTHETICAL 12.2 KD PROTEIN IN COAT FELINE CALICIVIRUS (STRAIN CF1/68 FIV)(FCV) 4-38 PROTEIN PY12K_RHDV HYPOTHETICAL 12.1 KD PROTEIN IN COAT FELINE CALICIVIRUS (STRAIN F9)(FCV) 4-38 PROTEIN PY12K_RHDV3 HYPOTHETICAL 12.7 KD PROTEIN IN COAT RABBIT HEMORRHAGIC DISEASE VIRUS (RHDV) 13-50 PROTEI PY13K_CLVK HYPOTHETICAL 12.7 KD PROTEIN IN COAT RABBIT HEMORRHAGIC DISEASE VIRUS (STRAIN V-351)(RHDV) 13-50 PROTEIN PY13K_CLVN HYPOTHETICAL 13.1 KD PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 40-77 PY13K_NPVOP HYPOTHETICAL 13.1 KD PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 43-77 PY13K_SSV1 HYPOTHETICAL 14.5 KD PROTEIN IN 39 KD ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 16-67 PROTEIN VIRUS PY14K_SSV1 HYPOTHETICAL 13.2 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 2-36 62-96 PY168_ADE02 HYPOTlIETICAL 13.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 5-39 PY16K_SSV1 HYPOTHETICAL PROTEIN C-168 HUMAN ADENOVIRUS TYPE 2 119-166 PY17K_SSV1 HYPOTHETICAL 15.6 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 1-35 77-111 PY18K_SSV1 HYPOTHETICAL 17.8 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 1-45 119-153 PY20K_SSV1 HYPOTHETICAL 18.0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 102-136 PY28K_SSV1 HYPOTHETICAL 20.4 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 73-107 PY2_SOCMV HYPOTHETICAL 28.5 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 127-180 PY31K_SSV1 HYPOTHETICAL PROTEIN 2 SOYBEAN CHLOROTIC MOTTLE VIRUS 117-154 PY32K_SSV1 HYPOTHETICAL 31.5 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 7-97 100-141 PY38K_NPVAC HYPOTHETICAL 31.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 230-278 PY3_SOCMV HYPOTHETICAL 37.7 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 133-241 PY5K9_SSV1 HYPOTHETICAL PROTEIN 3 SOYBEAN CHLOROTIC MOTTLE VIRUS 115-149 PY7_SOCMV HYPOTHETICAL 5.9 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 1-51 PY85K_SSV1 HYPOTHETICAL PROTEIN 7 SOYBEAN CHLOROTIC MOTTLE VIRUS 56-94 PY8_SOCMV HYPOTHETICAL 85.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 81-125 503-537 346-587 658-700 PYB01_FOWPM HYPOTHETICAL PROTEIN 8 SOYBEAN CHLOROTIC MOTTLE VIRUS 46-83 PYB04_FOWPM HYPOTHETICAL BAMHI-ORF1 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 74-115 184-221 PYB05_FOWPM HYPOTHETICAL BAMHI-ORF4 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 29-70 PYB06_FOWPM HYPOTHETICAL BAMHI-ORF5 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 3-37 61-95 PYB07_FOWPM HYPOTHETICAL BAMHI-ORF6 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 115-149 PYB10_FOWPM HYPOTHETICAL BAMHI-ORF7 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 344-378 PYV12_FOWPM HYPOTHETICAL BAMHI-ORF10 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 162-233 PYB13_FOWPM HYPOTHETICAL BAMHI-ORF12 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 4-47 117-153 PYBL2_EBV HYPOTHETICAL BAMHI-ORF13 PROTEIN FOWLPOX VIRUS (ISOLATGE HP-438[MUNICH]) 122-163 PYDH1_HSVS7 HYPOTHETICAL BBLF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 458-506 PYF30_FOWP1 HYPOTHETICAL 24.1 KD PROTEIN IN DHFR HERPESVIRUS SAIMIRI (STRAIN 484-77) 147-188 3′REGION PYGA1_HSVMB HYPOTHETICAL 30.9 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 160-204 PYGA1_HSVMM HYPOTHETICAL 23.6 KD PROTEIN IN MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1)(MDHV) 176-211 GLYCOPROTEI PYH22_VACCV HYPOTHETICAL 23.6 KD PROTEIN IN MAREK'S DISEASE HERPESVIRUS (STRAIN MD5)(MDHV) 176-211 GLYCOPROTEI PYHR3_VACCV HYPOTHETICAL 21.7 KD HINDIII-C PROTEIN VACCINIA VIRUS (STRAIN WR) 34-78 95-139 PYKR4_EBV HYPOTHETICAL HOST RANGE 27.4 KD VACCINIA VIRUS (STRAIN WR) 24-58 181-222 PROTEIN PYL15_ADE41 HYPOTHETICAL BKRF4 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 16-58 PYLR2_EBV HYPOTHETICAL 12.4 KD PROTEIN IN 33 KD HUMAN ADENOVIRUS TYPE 41 39-81 PROTEIN PYOR1_COYMV HYPOTHETICAL BLRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPES VIRUS 4) 64-125 PYOR2_COYMV HYPOTHETICAL 23 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS (COYMV) 94-147 PYOR2_LELV HYPOTHETICAL 15 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS (COYMV) 33-77 PYOR3_TTV1 HYPOTHETICAL 28.4 KD PROTEIN LELYSTAD VIRUS (LV) 100-134 PYOR5_ADEG1 HYPOTHETICAL 6.9 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 14-54 PYORA_TTV1 HYPOTHETICAL 31.3 KD PROTEIN AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)(FOWL 70-127 ADENOVIRU PYORD_TTV1 HYPOTHETICAL 8.1 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 21-67 PYORE_TTV1 HYPOTHETICAL 15.4 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 6-51 89-130 PYORL_TTV1 HYPOTHETICAL 15.3 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV I) 78-122 PYORQ_TTV1 HYPOTHETICAL 26.8 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 1-45 PYORT_TTV1 HYPOTHETICAL 7.3 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 1-43 PYORW_TTV1 HYPOTHETICAL 38.7 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 4-38 281-315 PYP12_RTBV HYPOTHETICAL 12.1 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1) 4-89 PVP12_RTBVP HYPOTHETICAL P12 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (RTBV) 33-72 PYP24_RTBV HYPOTHETICAL P12 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) 33-72 (RTB PYP24_RTBVP HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (RTBV) 51-101 106-157 PYP46_RTBV HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)(RT 51-101 106-157 PYP46_RTBVP HYPOTHETICAL P46 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (RTBV) 49-111 197-231 PYP63_NPVAC HYPOTHETICAL P46 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)(RT 49-111 197-231 PYP7A_TNVA HYPOTHETICAL PROTEIN IN P6.5 5′REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 32-73 PYPOH_NPVAC HYPOTHETICAL P7A PROTEIN TOBACCO NECROSIS VIRUS (STRAIN A)(TNV) 1-65 PYPOL_IPNVJ HYPOTHETICAL 23.6 KD PROTEIN IN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS( 116-153 POLYHEDRIN 5 PYQ1_AMEPV HYPOTHETICAL 17.3 KD PROTEIN INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE 25-66 JASPER) PYQ3_AMEPV HYPOTHETICAL 7.6 KD PROTEIN IN TK AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 9-61 5′REGION PYRF2_HSV6G HYPOTHETICAL PROTEIN IN TK 3′REGION AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 1-57 62-96 149-183 PYRF3_HSV6G HYPOTHETICAL PROTEIN RF2 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 193-224 PYRF4_HSV6G HYPOTHETICAL PROTEIN RF3 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 134-175 PYRP2_RV6 HYPOTHETICAL PROTEIN RF4 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 252-286 404-442 PYRR1_EBV REPETITIVE PROTEIN ORF2 CHILO IRIDESCENT VIRUS (CIV)(INSECT IRIDESCENT VIRUS 1-45 TYP PYSR1_EBV HYPOTHETICAL BRAF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 96-130 PYTR1_EBV HYPOTHETICAL BSRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 98-177 PYUB2_NPVOP HYPOTHETICAL BTRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4) 390-424 PYVAC_VACCC HYPOTHETICAL 24.0 KD PROTEIN IN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 25-69 170-204 UBIQUITIN 3′RE VIRUS PYVAG_VACCC HYPOTHETICAL 14.4 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 29-63 PYVAH_VACCC HYPOTHETICAL 9.3 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 3-37 PYVAN_VACCC HYPOTHETICAL 14.5 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 78-112 PYVBH_VACCC HYPOTHETICAL 7.9 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 23-57 PYVCC_VACCC HYPOTHETICAL 7.4 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 5-39 PYVDB_VACCC HYPOTHETICAL 9.2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 11-48 PYVDB_VACCV HYPOTHETICAL 8.5 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 29-80 PYVDC_VACCV HYPOTHETICAL 8.5 KD PROTEIN VACCINIA VIRUS (STRAIN WR) 46-80 PYVGB_VACCC HYPOTHETICAL 7.3 KD PROTEIN VACCINIA VIRUS (STRAIN WR) 7-41 PYVHA_VACCC HYPOTHETICAL 8.4 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 10-51 HYPOTHETICAL 8.1 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 9-53

TABLE VI 107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS PCGENE 107 × 178 × 4 All Viruses (no bacteriophages) AREA AREA AREA AREA AREA AREA AREA AREA AREA FILE NAME PROTEIN VIRUS 1 2 3 4 5 6 7 8 9 P194K_TRVSY POT 195 KD PRO TOBACCO RATTLE VIRUS (STRAIN SYM) 387-414 1087- 1142- 1114 1169 PAANT_HDVAM DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVD3 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVIT DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVM2 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVS1 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 16-43 106-133 PAANT_HDVS2 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 16-43 106-133 PAANT_HDVWO DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAT3H_FOWPM ANTITHROMBIN-III HOMOLOG FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 72-106 PATI1_VACCV 94 KD A-TYPE INCLUSION PRO VACCINIA VIRUS (STRAIN WR) 14-56 67-94 424-472 570-625 PATI1_VARV 81 KD A-TYPE INCLUSION PRO VARIOLA VIRUS 67-94 425-504 571-605 PATI2_HSVII ALPHA TRANS-IND FACTOR 78 KD PRO HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 308-335 PAT12_HSVIF ALPHA TRANS-IND FACTOR 77 KD PRO HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 308-335 PATI2_HSVEB ALPHA TRANS-IND FACTOR 82 KD PRO EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 294-321 PATIN_HSVEB ALPHA TRANS-IND PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 255-289 PAT1_COWPX A-TYPE INCLUSION PROTEIN COWPOX VIRUS 14-56 67-94 426-498 572-620 837-841 934-990 1234- 1261 PBZLF_EBV BZLF1 TRANS-ACTIVATOR PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 193-220 PCAHH_VACCC CELL SURFACE-BINDING PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 84-111 117-144 PCAHH_VACCV CELL SURFACE-BINDING PROTEIN VACCINIA VIRUS (STRAIN WR) 84-111 117-144 PCAHH_VARV CELL SURFACE-BINDING PROTEIN VARIOLA VIRUS 84-111 117-144 PCELF_HSVEB CELL FUSION PROTEIN PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAINS AB4P and Ky A) 312-339 PCGH2_HSVSA CYCLIN HOMOLOG HERPES VIRUS SAIMIRI (STRAIN 11) 127-154 PCOA1_POVHA COAT PROTEIN VP1 HAMSTER POLYOMAVIRUS 159-186 PCOA2_BFDV COAT PROTEIN VP2 BUDGERIGAR FLEDGLING DISEASE VIRUS 160-187 PCOA2_POVBO COAT PROTEIN VP2 BOVINE POLYOMAVIRUS 49-76 PCOA2_POVJC COAT PROTEIN VP2 POLYOMAVIRUS JC 37-64 PCOA2_POVLY COAT PROTEIN VP2 LYMPHOTROPIC POLYOMAVIRUS 170-204 PCOA2_POVMK COAT PROTEIN VP2 MOUSE POLYOMAVIRUS (STRAIN KILHAM) 22-49 PCOA2_SV40 COAT PROTEIN VP2 SIMIAN VIRUS 40 178-205 PCOA3_AAV2 PROBABLE COAT PROTEIN 3 ADENO-ASSOCIATED VIRUS 2 120-147 PCOA3_TTV1 COAT PROTEIN TP3 THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 3-30 PCOAT_ADVG COAT PROTEIN VP1 ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G) 194-221 PCOAT_BLRV COAT PROTEIN BEAN LEAFROLL VIRUS 96-123 PCOAT_CAMVC COAT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 63-90 193-220 461-488 PCOAT_CAMVD COAT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 64-91 194-221 PCOAT_CAMVE COAT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 63-90 193-220 PCOAT_CAMVN COAT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 63-90 192-219 461-488 PCOAT_CAMVS COAT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 64-91 194-221 PCOAT_CARMV COAT PROTEIN CARNATION MOTTLE VIRUS 16-43 PCOAT_CHVP1 MAJOR CAPSID PROTEIN PARAMECIUM BURSARIA CHLORELLA VIRUS 1 41-86 PCOAT_CNV COAT PROTEIN CUCUMBER NECROSIS VIRUS 328-362 PCOAT_CSMV COAT PROTEIN CHLORIS STRIATE MOSAIC VIRUS 62-89 PCOAT_CYMV COAT PROTEIN CLOVER YELLOW MOSAIC VIRUS 170-200 PCOAT_FCVC6 COAT PROTEIN FELINE CALICIVIRUS (STRAIN CF1/68 FIV) 566-600 PCOAT_FCVF4 COAT PROTEIN FELINE CALICIVIRUS (STRAIN JAPANESE F4) 516-543 566-600 PCOAT_FCVF9 COAT PROTEIN FELINE CALICIVIRUS (STRAIN F9) 519-546 569-603 PCOAT_FMVD PROBABLE COAT PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 220-247 358-385 PCOAT_LSV COAT PROTEIN LILY SYMPTOMLESS VIRUS 32-700 246-273 PCOAT_MISV COAT PROTEIN MISCANTHUS STREAK VIRUS 139-166 PCOAT_ORSV COAT PROTEIN ODONTOGLOSSUM RINGSPOT VIRUS 106-133 PCOAT_PAVHB PROBABLE COAT PROTEIN VP1 HUMAN PARVOVIRUS B19 524-551 569-596 PCOAT_POPMV COAT PROTEIN POPLAR MOSAIC VIRUS (ISOLATE ATCC PV275) 46-73 PCOAT_SOCMV COAT PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 128-162 PCOAT_TAMV GENOME POLYPROTEIN TAMARILLO MOSAIC VIRUS 21-48 PCOAT_TAV COAT PROTEIN TOMATO ASPERMY VIRUS 23-50 PCOAT_TBSVB COAT PROTEIN TOMATO BUSHY STUNT VIRUS (STRAIN BS-3) 3-30 41-68 PCOAT_TBSVC COAT PROTEIN TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY) 97-134 PCOAT_TCV COAT PROTEIN TURNIP CRINKLE VIRUS 232-259 PCOAT_TMGMV COAT PROTEIN TOBACCO MILD GREEN MOSAIC VIRUS 104-131 PCOAT_TMV COAT PROTEIN TOBACCO MOSAIC VIRUS (VULGARE) 104-131 PCOAT_TMVCO COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN COWPEA) 78-132 PCOAT_TMVDA COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN DAHLEMENSE) 104-131 PCOAT_TMVER COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN ER) 104-131 PCOAT_TMVO COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN O and KOKUBU) 104-131 PCOAT_TMVOM COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN OM) 104-131 PCOAT_TMVTO COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) 104-131 PCOAT_TNVA COAT PROTEIN TOBACCO NECROSIS VIRUS (STRAIN A) 90-117 PCOAT_TRVPS COAT PROTEIN TOBACCO RATTLE VIRUS (STRAINS PSG and PLB) 118-145 PCOAT_TYDVA COAT PROTEIN TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA) 10-37 PCOAT_TYMV COAT PROTEIN TURNIP YELLOW MOSAIC VIRUS 41-68 PCOAT_TYMVA COAT PROTEIN TURNIP YELLOW MOSAIC VIRUS (AUSTRALIAN ISOLATE) 41-68 PDNB2_ADE07 EARLY E2A DNA-BINDING PROTEIN HUMAN ADENOVIRUS TYPE 7 46-73 PDNB1_EBV MAJOR DNA-BINDING PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 977- 1041- 1004 1068 PDNB1_HCMVA MAJOR DNA-BINDING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 437-464 PDNB1_HSVSA MAJOR DNA-BINDING PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 333-368 512-539 PDNB1_MCMVS MAJOR DNA-BINDING PROTEIN MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 584-618 PDNB1_POVJC DNA-BINDING PROTEIN POLYOMAVIRUS JC 2-29 PDNB1_SCMVC MAJOR DNA-BINDING PROTEIN SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN) 435-462 532-559 PDNL1_VACCC DNA LIGASE VACCINIA VIRUS (STRAIN COPENHAGEN) 104-131 172-199 358-385 PDNL1_VACCV DNA LIGASE VACCINIA VIRUS (STRAIN WR) 104-131 172-199 358-385 PDNL1_VARV DNA LIGASE VARIOLA VIRUS 104-131 172-199 358-385 PDPOL_ADE12 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 12 403-431 PDPOL_CBEPV DNA POLYMERASE CHORISTONEURA BIENNIS ENTOMOPOXVIRUS 23-64 202-240 PDPOL_CHVN2 DNA POLYMERASE CHLORELLA VIRUS NY-2A 338-365 PDPOL_CHVP1 DNA POLYMERASE PARAMECIUM BURSARIA CHLORELLA VIRUS 1 338-365 PDPOL_FOWPV DNA POLYMERASE FOWLPOX VIRUS 17-51 370-416 621-655 772-799 PDPOL_HCMVA DNA POLYMERASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 753-780 PDPOL_HPBDB DNA POLYMERASE DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK 5-39 ISOLATE S5) PDPOL_HPBDC DNA POLYMERASE DUCK HEPATITIS B VIRUS (STRAIN CHINA) 5-39 PDPOL_HPBDW DNA POLYMERASE DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK 5-39 304-331 ISOLATES 31) PDPOL_HPBGS DNA POLYMERASE GROUND SQUIRREL HEPATITIS VIRUS 271-325 PDPOL_HPBHE DNA POLYMERASE HERON HEPATITIS B VIRUS 5-39 PDPOL_HPBVP DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 456-483 PHILIPPINO/TFDW294) PDPOL_HPBVZ DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADYW) 443-470 PDPOL_HSVI1 DNA POLYMERASE ICTALURID HERPESVIRUS 1 328-366 710-737 PDPOL_HSVSA DNA POLYMERASE HERPESVIRUS SAIMIRI (STRAIN 11) 625-652 PDPOL_NPVAC DNA POLYMERASE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 598-643 VIRUS PDPOL_NPVLD DNA POLYMERASE LYMANTRIA DISPAR MULTICAPSID NUCLEAR 357-384 POLYHEDROSIS VIRUS PDPOL_VACCC DNA POLYMERASE VACCINIA VIRUS (STRAIN COPENHAGEN) 770-797 PDPOL_VACCV DNA POLYMERASE VACCINIA VIRUS (STRAIN WR) 770-797 PDPOL_VARV DNA POLYMERASE VARIOLA VIRUS 769-796 PDPOL_WHV1 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 1 285-326 PDPOL_WHV59 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 59 290-331 PDPOL_WHV7 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 7 212-242 290-331 PDPOL_WHV8 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 211-241 289-330 PDPOL_WHV81 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 212-242 290-331 PDTXH_CORBE DIPHTH TOXIN HOMOLOG CRM228 PREC CORYNEPHAGE BETA 516-533 PDTX_CORBE DIPHTHERIA TOXIN PRECURSOR CORYNEPHAGE BETA 523-560 PDTX_COROM DIPHTHERIA TOXIN PRECURSOR CORYNEPHAGE OMEGA 516-533 PDUT_HSVE4 DEOXYU 5′-TRIPHOSPH NUCHYDROLASE EQUINE HERPES VIRUS TYPE 4 (STRAIN 1942) 90-117 PDUT_HSVSA DEOXYU 5′-TRIPHOSPH NUCHYDROLASE HERPES VIRUS SAIMIRI (STRAIN 11) 179-213 PEIBL_ADE07 EIB PROTEIN, LARGE T-ANTIGEN HUMAN ADENOVIRUS TYPE 7 126-153 PEIBL_ADE40 EIB PROTEIN, LARGE T-ANTIGEN HUMAN ADENOVIRUS TYPE 40 136-163 PEIBS_ADE12 EIB PROTEIN, SMALL T-ANTIGEN HUMAN ADENOVIRUS TYPE 12 3-30 PE1BS_ADEM1 EIB PROTEIN, SMALL T-ANTIGEN MOUSE ADENOVIRUS TYPE 1 122-173 PE314_ADE02 EARLY E3B 14 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 2-29 PE314_ADE07 EARLY E3 15.3 KD PROTEIN HUMAN ADENOVIRUS TYPE 7 21-48 PE320_ADE03 EARLY E3 20.1 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 3 5-32 70-100 PE320_ADE35 EARLY E3 20.3 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 35 70-107 PE322_ADE35 EARLY E3 20.6 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 35 125-161 PE3GL_ADEM1 EARLY E3 17.7 KD GLYCOPROTEIN MOUSE ADENOVIRUS TYPE 1 38-66 PEAR_EBV EARLY ANTIGEN PROTEIN R EPSTEIN-BARR VIRUS (STRAIN B95-8) 55-82 PEFTI_VARV EARLY TRANS FACTOR 70 KD SUBUNIT VARIOLA VIRUS 307-341 470-497 PENV_AVIRE ENV POLYPROTEIN AVIAN RETICULOENDOTHELIOSIS VIRUS 420-468 PENV_AVISN ENV POLYPROTEIN AVIAN SPLEEN NECROSIS VIRUS 6-33 426-474 PENV_BAEVM ENV POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 395-452 PENV_BIV06 ENV POLYPROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) 17-44 544-603 631-695 PENV_B1V27 ENV POLYPROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) 17-44 573-632 660-724 PENV_BLVAF ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE FLK) 304-377 PENV_BLVAU ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) 304-377 PENV_BLVAV ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE VDM) 304-377 PENV_BLVB2 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB285) 311-377 PENV_BLVB5 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB59) 304-377 PENV_BLVJ ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) 304-377 PENV_CAEVG ENV POLYPROTEIN CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN G63) 165-192 PENV_EIAV1 ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-1) 668-712 PENV_EIAV2 ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-2) 668-695 PENV_EIAV3 ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-3) 668-712 PENV_EIAV5 ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-5) 669-696 PENV_EIAV9 ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) 668-712 PENV_EIAVC ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 668-712 PENV_EIAVW ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (STRAIN WSU5) 668-712 PENV_EIAVY ENV POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) 668-712 PENV_FENV1 ENV POLYPROTEIN FELINE ENDOGENOUS VIRUS ECE1 33-60 517-544 PENV_FIVPE ENV POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) 650-680 722-749 PENV_FIVSD ENV POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO) 639-668 720-747 PENV_FIVT2 ENV POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2) 640-679 721-748 PENV_FLVC6 ENV POLYPROTEIN FELINE LEUKEMIA PROVIRUS (CLONE CFE-6) 509-538 PENV_FLVGL ENV POLYPROTEIN FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1) 490-519 PENV_FLVLB ENV POLYPROTEIN FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1) 510-539 PENV_FLVSA ENV POLYPROTEIN FELINE LEUKEMIA VIRUS (STRAIN SARMA) 487-516 PENV_FOAMV ENV POLYPROTEIN HUMAN SPUMARETROVIRUS 14-41 318-355 866-893 PENV_FSVGA ENV POLYPROTEIN FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN) 510-539 PENV_FSVGB ENV POLYPROTEIN FELINE SARCOMA VIRUS (STRAIN GA) 496-519 PENV_FSYSM ENV POLYPROTEIN FELINE SARCOMA VIRUS (STRAIN SM) 493-522 PENV_GALV ENV POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 176-203 523-564 PENV_HTL1A ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATR) 342-376 PENV_HTL1C ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I (CARIBBEAN 342-376 ISOLATE) PENV_HTL1M ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I (ISOLATE MT-2) 342-376 PENV_HTLV2 ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE II 336-370 PENV_HV1A2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 544-592 630-682 790-825 ISOLATE) PENV_HV1B1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BII10 ISOLATE) 545-594 631-683 791-818 PENV_HV1B8 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BII8 ISOLATE) 540-589 626-678 786-813 PENV_HV1BN ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN 267-294 338-365 562-590 628-639 787-815 ISOLATE) PENV_HV1BR ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) 550-599 636-688 796-823 PENV_HV1C4 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 397-424 557-606 643-695 803-835 ISOLATE) PENV_HV1EL ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 255-296 386-413 543-391 628-680 PENV_HV1H2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 545-594 631-683 791-818 ISOLATE) PENV_HV1H3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB3 545-594 632-683 791-818 ISOLATE) PENV_HV1J3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 350-377 556-605 642-694 802-829 PENV_HV1JR ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF 336-363 622-675 783-811 ISOLATE) PENV_HV1KB ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN 274-301 555-596 637-677 776-824 KB-1-GP32) PENV_HV1MA ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL 547-595 633-707 794-826 ISOLATE) PENV_HV1MF ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MFA 543-592 629-681 789-816 ISOLATE) PENV_HV1MN ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 343-370 567-595 632-684 791-819 PENV_HV1N5 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 326-360 ISOLATE) PENV_HV1ND ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK 249-290 536-583 621-673 783-813 ISOLATE) PENV_HVIOY ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) 544-593 630-704 789-820 PENV_HVIPV ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 545-594 631-683 791-818 ISOLATE) PENV_HV1RH ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT 280-307 351-378 554-602 640-692 800-832 ISOLATE) PENV_HV1S1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162 333-363 536-585 622-674 782-809 ISOLATE) PENV_HV1S3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF33 541-589 627-679 787-815 ISOLATE) PENV_HV1SC ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SC ISOLATE) 338-365 545-593 631-683 PENV_HV1W1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ1 338-365 345-593 631-683 791-818 ISOLATE) PENV_HV1W2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ2 334-361 336-584 622-674 782-809 ISOLATE) PENV_HV1Z2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 255-296 542-591 628-680 790-820 ISOLATE) PENV_HV1Z3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 3 251-292 ISOLATE) PENV_HV1Z6 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6 256-297 343-593 630-682 792-822 ISOLATE) PENV_HV1Z8 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z-84 266-307 573-601 634-678 797-828 ISOLATE) PENV_HV1ZH ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE IIZJ21 545-394 627-666 791-823 ISOLATE) PENV_HV2BE ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 61-88 532-591 621-648 653-697 BEN) PENV_HV2CA ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 534-591 623-650 655-699 CAM2) PENV_HV2D1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 61-88 523-550 555-582 644-688 D194) PENV_HV2G1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 60-87 524-551 556-583 613-640 645-693 GHANA-1) PENV_HV2NZ ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 61-88 524-551 556-383 613-640 662-689 NIH-Z) PENV_HV2RO ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 58-85 533-592 622-698 ROD) PENV_HV2S2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 442-476 527-554 559-596 648-682 ST/24 IC#2) PENV_HV2SB ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 557-584 614-673 SBLISY) PENV_HV2ST ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) 442-476 527-534 359-586 648-692 PENV_MCFF ENV POLYPROTEIN MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS 473-512 PENV_MCFF3 ENV POLYPROTEIN MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS 488-515 (ISOLATE CI-3) PENV_MLVAV ENV POLYPROTEIN AKV MURINE LEUKEMIA VIRUS 517-544 PENV_MLVCB ENV POLYPROTEIN CAS-BR-E MURINE LEUKEMIA VIRUS 510-539 PENV_MLVF5 ENV POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57) 523-553 PENV_MLVFF ENV POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29) 523-553 PENV_MLVFP ENV POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211) 523-553 PENV_MLVHO ENV POLYPROTEIN HOMULV MURINE LEUKEMIA VIRUS 510-540 PENV_MLVK1 ENV POLYPROTEIN KIRSTEN MURINE LEUKEMIA VIRUS 40-81 PENV_MLVMO ENV POLYPROTEIN MOLONEY MURINE LEUKEMIA VIRUS 502-543 PENV_MLVRD ENV POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 497-538 PENV_MLVRK ENV POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN) 497-538 PENV_MMTVB ENV POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 458-485 562-589 PENV_MMTVG ENV POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 458-485 562-589 PENV_MPMV ENV POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 422-470 PENV_MSVFB ENV POLYPROTEIN FBJ MURINE OSTEOSARCOMA VIRUS 57-84 PENV_OMVVS ENV POLYPROTEIN OVINE LENTIVIRUS (STRAIN SA-OMVV) 42-69 196-223 780-807 PENV_RMCFV ENV POLYPROTEIN RAUSCHER MINK CELL FOCUS-INDUCING VIRUS 487-517 PENV_SFV1 ENV POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1) 14-41 866-901 PENV_SFV3L ENV POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 18-45 319-357 673-700 863-898 PENV_SIVA1 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 269-310 561-588 592-619 652-679 697-724 PENV_STVAG ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 270-301 566-593 597-624 658-685 703-730 PENV_SIVAI ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE 257-291 336-372 548-603 634-708 AGM/CLONE GRI-I) PENV_SIVAT ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 3-30 268-298 390-617 651-678 PENV_SIVCZ ENV POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 160-187 253-289 336-366 526-584 627-654 PENV_SIVGB ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 8-35 158-185 589-650 784-816 PENV_SIVM1 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) 120-150 550-609 671-715 PENV_SIVM2 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM251 ISOLATE) 156-215 277-289 PENV_SIVMK ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 553-608 PENV_SIVML ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE) 549-608 PENV_SIVS4 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) 281-308 553-612 642-669 691-718 PENV_SIVSP ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) 286-313 554-595 646-722 PENV_SMRVH ENV POLYPROTEIN SQUIRREL MONKEY RETROVIRUS (SMRV-H) 400-462 PENV_SRV1 ENV POLYPROTEIN SIMIAN RETROVIRUS SRV-1 409-471 PENV_VILV ENV POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514) 22-62 773-800 PENV_VILV1 ENV POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS1) 22-62 780-807 PENV_VILV2 ENV POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS2) 22-62 782-809 PETF1_FOWP1 EARLY TRANS FACTOR 70 KD SUBUNIT FOWLPOX VIRUS (STRAIN FP-1) 190-224 PETF1_SFVKA EARLY TRANS FACTOR 70 KD SUBUNIT SHOPE FIBROMA VIRUS (STRAIN KASZA) 306-340 469-496 550-587 PETF1_VACCC EARLY TRANS FACTOR 70 KD SUBUNIT VACCINIA VIRUS (STRAIN COPENHAGEN) 307-341 470-497 PETF1_VACCV EARLY TRANS FACTOR 70 KD SUBUNIT VACCINIA VIRUS (STRAIN WR) 307-341 470-497 PETF2_VACCC EARLY TRANSCRIPTION FACTOR 82 VACCINIA VIRUS (STRAIN COPENHAGEN) 66-97 174-210 302-332 PETF2_VARV EARLY TRANSCRIPTION FACTOR 82 VARIOLA VIRUS 66-97 174-210 302-332 PEXON_VZVD ALKALINE EXONUCLEASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 109-139 PFIB2_ADE40 41.4 KD FIBER PROTEIN HUMAN ADENOVIRUS TYPE 40 179-237 PFIB2_ADE41 41.4 KD FIBER PROTEIN HUMAN ADENOVIRUS TYPE 41 178-216 PFIBP_ADE02 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 2 308-335 PFIBP_ADE40 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 40 324-351 446-473 PFIBP_ADE41 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 41 339-366 461-488 PFIBP_ADEB3 FIBER PROTEIN BOVINE ADENOVIRUS TYPE 3 118-145 164-191 PFIBP_ADEM1 FIBER PROTEIN MOUSE ADENOVIRUS TYPE 1 275-305 325-352 PFOSX_MSVFR V-FOS/FOX TRANSFORMING PROTEIN FBR MURINE OSTEOSARCOMA VIRUS 138-169 PFOS_AVINK P55-V-FOS TRANSFORMING PROTEIN AVIAN RETROVIRUS NK24 116-147 PFOS_MSVFB P55-V-FOS TRANSFORMING PROTEIN FBJ MURINE OSTEOSARCOMA VIRUS 162-193 PGAG_AVISN GAG POLYPROTEIN AVIAN SPLEEN NECROSIS VIRUS 270-297 PGAG_EIAVY GAG POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) 144-171 PGAG_FOAMV GAG POLYPROTEIN HUMAN SPUMARETROVIRUS 621-648 PGAG_GALV GAG POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 396-442 447-474 PGAG_HVIA2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 91-118 ISOLATE) PGAG_HV1J3 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 91-118 PGAG_HV1MN GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 87-118 PGAG_HV2BE GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 88-115 BEN) PGAG_HV2D1 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 88-115 D194) PGAG_HV2NZ GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 88-115 NIH-Z) PGAG_HV2ST GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) 88-115 PGAG_IPHA RETROVIRUS-RELATED GAG POLYPROTEI HAMSTER INTRACISTERNAL A-PARTICLE 270-297 PGAG_IPMA RETROVIRUS-RELATED GAG POLYPROTEI MOUSE INTRACISTERNAL A-PARTICLE 33-60 69-103 232-259 PGAG_IPMAE RETROVIRUS-RELATED GAG POLYPROTEI MOUSE INTRACISTERNAL A-PARTICLE 96-130 PGAG_MMTVB GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 84-151 156-187 PGAG_MMTVC GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H) 84-116 PGAG_MMTVG GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 84-151 156-187 PGAG_MPMV GAG POLYPROTEIN SIMIAN MASON-PFIZER VIRUS (MPMV) 222-260 PGAG_SCVLA MAJOR COAT PROTEIN SACCHAROMYCES CEREVISIAE VIRUS L-A 491-531 624-651 PGAG_SIVAI GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE 473-507 GRI-1) PGAG_SIVMK GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 88-115 PGAG_SIVMS GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (STM ISOLATE) 88-115 PGAG_SIVS4 GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) 88-115 PGAG_SIVSP GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (PB1/BC13 ISOLATE) 88-115 PGAG_SMSAV GAG POLYPROTEIN SIMIAN SARCOMA VIRUS 397-443 PGAG_SRV1 GAG POLYPROTEIN SIMIAN RETROVIRUS SRV-1 223-261 PHELI_HSVEB PROBABLE HELICASE EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 184-211 321-348 PHELI_HSVSA PROBABLE HELICASE HERPES VIRUS SAIMIRI (STRAIN 11) 418-449 PHELI_VZVD PROBABLE HELICASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 490-517 701-728 PHEMA_CVBF HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN F15) 208-242 PHEMA_CVBLY HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN LY-138) 208-242 PHEMA_CVBM HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS STRAIN MEBUS) 208-242 PHEMA_CVBQ HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN QUEBEC) 208-242 PHEMA_CVHOC HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN OC43) 208-242 PHEMA_IAAIC HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/AICHI/2/68) 387-453 PHEMA_IABAN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79) 24-51 371-437 PHEMA_IABUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 381-451 A/BUDGERIGAR/HOKKAIDO/I/77) PHEMA_IACAO HEMAGGLUTININ INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82) 9-36 PHEMA_IACKA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/ALABAMA/1/75) 381-451 PHEMA_IACKG HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 31-58 382-441 494-528 PHEMA_IACKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 396-426 A/CHICKEN/PENNSYLVANIA/1/83) PHEMA_IACKQ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 396-426 A/CHICKEN/PENNSYLVANIA/1370/83) PHEMA_IACKV HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/VICTORIA/1/85) 119-146 384-443 PHEMA_IADA1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76) 381-451 PHEMA_IADA2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 423-453 499-543 PHEMA_IADA3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/78/76) 387-453 PHEMA_IADA4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/35/76) 29-56 418-478 PHEMA_IADCZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 381-451 A/DUCK/CZECHOSLOVAKIA/56) PHEMA_IADE1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 21-55 402-453 506-533 PHEMA_IADH1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOOKAIDO/5/77) 371-437 PHEMA_IADH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 371-437 PHEMA_IADH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/33/80) 371-437 PHEMA_IADH4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/7/82) 371-437 PHEMA_IADH5 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/21/82) 371-437 PHEMA_IADH6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/9/85) 371-437 PHEMA_IADH7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/10/85) 371-437 PHEMA_IADIR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/IRELAND/113/83) 415-445 PHEMA_IADM2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/546/76) 21-56 PHEMA_IADM2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74) 387-453 PHEMA_IADMA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53) 31-58 PHEMA_LADNY HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/NEW YORK/12/78) 21-55 PHEMA_IADNZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/NEW 381-451 ZEALAND/31/76) PHEMA_IADU1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/60) 21-55 PHEMA_IADU3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 387-453 PHEMA_IAEN6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ENGLAND/878/69) 24-51 PHEMA_IAEN7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77) 40-67 387-453 PHEMA_IAFPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 177-221 384-442 VIRUS/ROSTOCK/34) PHEMA_IAGRE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GREY 381-451 TEAL/AUSTRALIA/2/79) PHEMA_IAGU2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 505-532 PHEMA_IAGUA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84) 504-531 PHEMA_IAHAL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ALGIERS/72) 386-452 PHEMA_IAHAR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/HARBIN/1/88) 29-56 PHEMA_IAHC6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/63) 29-56 194-221 388-457 PHEMA_IAHC7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/73) 29-56 194-221 388-457 PHEMA_IAHCD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/C DETROIT/1/64) 29-56 194-221 388-457 PHEMA_IAHDE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/DETROIT/1/64) 29-56 194-221 388-457 PHEMA_IAHFO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 386-452 A/EQUINE/FONTAINEBLEAU/76) PHEMA_IAHK6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/86) 386-452 PHEMA_IAHK7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/87) 386-452 PHEMA_IAHLE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/LEXINGTON/1/66) 29-56 194-221 388-457 PHEMA_IAHLO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 29-56 194-221 388-457 PHEMA_IAHMI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63) 386-452 PHEMA_IAHNM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW MARKET/76) 386-452 PHEMA_IAHNN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW 29-56 194-221 388-457 MARKET/1/77) PHEMA_IAHPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 29-56 194-221 388-457 PHEMA_IAHRO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ROMANIA/80) 386-452 PHEMA_IAHSA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SANTIAGO/1/85) 386-452 PHEMA_IAHSP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SAO PAULO/1/76) 29-56 194-221 388-457 PHEMA_IAHSW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN) 29-56 194-221 388-457 A/EQUINE/SWITZERLAND/137/72 PHEMA_IAHTE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 386-452 PHEMA_IAHTO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/TOKYO/71) 386-455 PHEMA_IAHUR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/URUGAY/1/63) 386-452 PHEMA_IAJAR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57) 196-223 PHEMA_IAKIE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 29-56 425-478 PHEMA_IALEN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 29-56 425-478 PHEMA_IAMAA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 380-450 A/MALLARD/ASTRAKHAN/244/82) PHEMA_IAMAB HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 385-455 A/MALLARD/ASTRAKHAN/263/82) PHEMA_IAMAO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW 387-453 YORK/6874/78) PHEMA_IAME1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71) 40-67 387-453 PHEMA_IAME2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/102/72) 40-67 387-453 PHEMA_IAME6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86) 24-51 371-437 PHEMA_IAMIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 31-58 382-441 PHEMA_IANT6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/NT/60/68) 387-453 PHEMA_IAP1L HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/PILOT 505-534 WHALE/MAINE/328/84) PHEMA_IAPUE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 29-56 425-478 PHEMA_IAQU7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/QU/7/70) 24-51 PHEMA_IARUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 381-451 JERSEY/47/85) PHEMA_IASE2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 381-451 A/SEAL/MASSACHUSETTS/133/82) PHEMA_IASH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 28-56 160-187 506-547 A/SHEARWATER/AUSTRALIA/72) PHEMA_IASTA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 119-146 384-443 A/STARLING/VICTORIA/5156/85) PHEMA_IATAI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TAIWAN/1/86) 29-56 PHEMA_IATKI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/IRELAND/1378/83) 415-445 PHEMA_IATKM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 381-451 A/TURKEY/MINNESOTA/833/80) PHEMA_IATKO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/7732/66) 507-534 PHEMA_IATKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/6118/68) 424-454 493-539 PHEMA_IATKR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 32-62 194-221 381-422 PHEMA_IATKW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/WISCONSIN/1/66) 419-449 500-536 PHEMA_IATRA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75) 21-55 PHEMA_IAUDO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 40-67 387-453 PHEMA_IAUSS HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 29-56 425-478 PHEMA_IAVI7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 41-68 388-454 PHEMA_IAWIL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 424-477 PHEMA_IAXIA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/XIANFENG/3/89) 29-56 PHEMA_IAZCO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/COLORADO/1/77) 40-67 387-453 PHEMA_LAZH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78) 371-437 PHEMA_IAZH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 371-437 PHEMA_IAZIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/INDIANA/1726/88) 418-478 506-547 PHEMA_IAZNJ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/NEW JERSEY/1176) 418-478 506-547 PHEMA_IAZUK HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/UKKEL/1/84) 387-453 PHEMA_INBBE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BEUING/1/87) 400-431 439-483 PHEMA_INBBO HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BONN/43) 390-421 429-473 PHEMA_INBEN HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82) 398-429 437-481 PHEMA_INBHK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73) 391-418 429-473 PHEMA_INBLE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/LEE/40) 399-430 438-482 PHEMA_INBMD HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 389-420 428-472 PHEMA_INBME HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86) 393-424 432-476 PHEMA_INBOR HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/OREGON/5/80) 398-429 437-481 PHEMA_INBSI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 398-429 437-481 PHEMA_INBUS HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/USSR/100/83) 391-422 430-474 PHEMA_INBVI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85) 393-424 432-476 PHEMA_INBVK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87) 400-431 439-483 PHEMA_INCCA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 495-571 PHEMA_INCEN HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83) 483-559 PHEMA_INCGL HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54) 483-559 PHEMA_INCHY HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83) 482-558 PHEMA_INCJH HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66) 496-572 PHEMA_INCKY HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/KYOTO/41/82) 482-558 PHEMA_INCMI HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80) 482-558 PHEMA_INCNA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/NARA/82) 482-558 PHEMA_INCP1 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81) 483-559 PHEMA_INCP2 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81) 483-559 PHEMA_INCP3 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82) 483-559 PHEMA_INCTA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47) 483-559 PHEMA_INCYA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81) 483-559 PHEMA_NDVA HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 64-91 VICTORIA/32) PHEMA_NDVB HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 64-91 PHEMA_NDVD HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN D26/76) 64-91 PHEMA_NDVH HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47) 64-91 PHEMA_NDVI HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45) 64-91 PHEMA_NDVM HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51) 64-91 PHEMA_NDVQ HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66) 64-91 PHEMA_NDVTG HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48) 64-91 PHEMA_NDVU HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67) 64-91 PHEMA_PHODV HEMAGGLUTININ-NEURAMINIDASE PHOCINE DISTEMPER VIRUS 39-66 46-73 PHEMA_PI1HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 1 VIRUS (STRAIN 79-110 366-393 WASHINGTON/1957) PHEMA_PI3B HEMAGGLUTININ-NEURAMINIDASE BOVINE PARAINFLUENZA 3 VIRUS 66-93 PHEMA_PI3H4 HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 27-61 PHEMA_PI3HA HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN AUS/124854/74) 27-61 PHEMA_PI3HT HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/545/80) 27-76 PHEMA_PI3HU HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/9305/82) 23-70 PHEMA_PI3HV HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/1267/83) 27-61 PHEMA_PI3HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/641/79) 27-61 PHEMA_PI3HX HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/1511/73) 27-61 PHEMA_RACV1 HEMAGGLUTININ PRECURSOR RACCOON POXVIRUS 166-214 256-283 PHEMA_SEND5 HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 79-106 PHEMA_SENDF HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN FUSHIMI) 79-106 PHEMA_SENDH HEMAGGLUTININ-NEURAMINIDASE SENADI VIRUS (STRAIN HARRIS) 79-106 PHEMA_SENDJ HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN HVJ) 79-106 PHEMA_SENDZ HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN Z) 79-106 PHEMA_SV41 HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 41 22-52 394-421 PHEMA_VACCC HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 119-146 175-202 216-243 PHEMA_VACCI HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN IHD-J) 109-146 175-202 216-243 PHEMA_VACCT HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN TIAN TAN) 119-146 175-202 216-243 PHEMA_VACCV HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN WR) 109-146 175-202 215-242 PHEMA_VARV HEMAGGLUTININ PRESURSOR VARIOLA VIRUS 111-148 177-211 214-244 PHEX9_ADE02 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 2 100-134 PHEX9_ADE05 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 5 100-134 PHEX9_ADE07 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 3 and 7 97-127 PHEX_ADE02 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 2 146-173 359-386 433-460 PHEX_ADE05 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 5 348-375 PHEX-ADE40 HEXON PROTEIN HUMAN ADENOVIRUS TYPE 40 396-423 PHEX_ADEB3 HEXON PROTEIN BOVINE ADENOVIRUS TYPE 3 305-338 PHI38_COWPX HEMORRHAGE-INDUCING 38 KD PROTEIN COWPOX VIRUS 28-55 PHRG_COWPX HOST RANGE PROTEIN COWPOX VIRUS 462-489 PI196_ASFB7 LATE PROTEIN I196l AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 12-43 PI226_ASFB7 LATE PROTEIN I226R AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 113-147 PIBMP_CAMV4 INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D4) 17-44 PIBMP_CAMVD INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 17-44 PIBMP_CAMVP INCLUSION BODY MATRIX PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) 383-410 PIBMP_CERV INCLUSION BODY MATRIX PROTEIN CARNATION ETCHED RING VIRUS 6-33 PIBMP_FMVD INCLUSION BODY MATRIX PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 372-407 PIBMP_SOCMV INCLUSION BODY MATRIX PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 3-48 331-358 PIC18_HCMVA PROB PROC &TRANSPORT PRO UL56 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 294-324 PIC18_HSVSA PROBABLE PROC &TRANSPORT PRO HERPESVIRUS SAIMIRI (STRAIN 11) 58-85 482-522 PIC18_MCMVS PROB PROC &TRANSPORT PRO MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 661-691 PIE63_HSVII TRANSCRIPTIONAL REGULATOR IE63 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 248-275 PIE68_HSVII IMMEDIATE-EARLY PROTEIN IE68 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 40-67 PIE68_HSVSA IMMEDIATE-EARLY PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 48-78 PIR05_HCMVA HYPOTHETICAL PROTEIN IRL5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 22-49 PIR12_HCMVA HYPOTHETICAL PROTEIN IRL12 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 74-162 PIR13_HCMVA HYPOTHETICAL PROTEIN IRL13 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 31-62 PKFES_FSVGA TYROSINE KINASE TRANSF PROTEIN FES FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN) 106-150 PKFGR_FSVGR TYROSINE KINASE TRANSF PROTEIN FGR FELINE SARCOMA VIRUS (STRAIN GARDNER-RASHEED) 218-252 PKFMS_FSVMD FMS TYROSINE KINASE TRANSF PROTEIN FELINE SARCOMA VIRUS (STRAIN MCDONOUGH) 327-362 PKFPS_FUISV TYROSINE KINASE TRANSF PROTEIN FPS FUJINAMI SARCOMA VIRUS 155-243 349-397 PKITH_AMEPV THYMIDINE KINASE AMSACTA MOOREI ENTOMOPOXVIRUS 47-84 PKITH_CAPVK THYMIDINE KINASE CAPRIPOXVIRUS (STRAIN KS-1) 41-68 PKITH_HSVSA THYMIDINE KINASE HERPESVIRUS SAIMIRI (STRAIN 11) 340-386 PKITH_ILTVT THYMIDINE KINASE INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 334-361 THORNE V882) PKR74_HSVII GENE 74 PROTEIN KINASE ICTALURID HERPES VIRUS 1 491-518 PKRB1_VACCC 30 KD PROTEIN KINASE HOMOLOG VACCINIA VIRUS (STRAIN COPENHAGEN) 141-168 PKRB1_VACCV 30 KD PROTEIN KINASE HOMOLOG VACCINIA VIRUS (STRAIN WR) 141-168 PKRB2_VACCC POSSIBLE PROTEIN KINASE B12 VACCINIA VIRUS (STRAIN COPENHAGEN) 147-174 PKRB2_VACCV POSSIBLE PROTEIN KINASE B12 VACCINIA VIRUS (STRAIN WR) 147-174 PKRF1_VACCC POSSIBLE PROTEIN KINASE F10 VACCINIA VIRUS (STRAIN COPENHAGEN) 47-74 PKRF1_VARV POSSIBLE PROTEIN KINASE F10 VARIOLA VIRUS 47-74 PKROS_AVISU ROS TYROSINE KINASE TRANSF PROTEIN AVIAN SARCOMA VIRUS (STRAIN UR2) 111-138 PKRYK_AVIR3 TYROSINE KINASE TRANSF PROTEIN RYK AVIAN RETROVIRUS RPL30 22-49 PKYES_AVISY TYROSINE KINASE TRANSF PROTEIN YES AVIAN SARCOMA VIRUS (STRAIN Y73) 199-233 PL100_ADE02 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 386-413 PL100_ADE05 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 386-413 PL100_ADE40 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 40 191-231 PL100_ADE41 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 41 206-233 PLMP1_EBV LATENT MEMBRANE PROTEIN 1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 148-175 PLMP1_EBVC LATENT MEMBRANE PROTEIN 1 EPSTEIN-BARR VIRUS (STRAIN CAO) 148-175 PLMP1_EBVR LATENT MEMBRANE PROTEIN 1 EPSTEIN-BARR VIRUS (STRAIN RAJI) 148-175 PLMP2_EBV GENE TERMINAL PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 294-321 PMCEL_SFVKA MRNA CAPPING ENZYME, LARGE SUBUNI SHOPE FIBROMA VIRUS (STRAIN KASZA) 54-156 289-316 497-524 622-656 PMCEL_VACCC MRNA CAPPING ENZYME, LARGE SUBUNI VACCINIA VIRUS (STRAIN COPENHAGEN) 85-112 291-311 630-657 PMCEL_VACCV MRNA CAPPING ENZYME, LARGE SUBUNI VACCINIA VIRUS (STRAIN WR) 85-112 291-318 630-657 PMCEL_VARV MRNA CAPPING ENZYME, LARGE SUBUNI VARIOLA VIRUS 85-112 291-318 630-657 PMCE_ASFB7 MRNA CAPPING ENZYME AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 279-313 PMOVP_CGMVS MOVEMENT PROTEIN CUCUMBER GREEN MOTTLE MOSAIC VIRUS 170-197 (WATERMELON STRAIN W) PMOVP_CGMVW MOVEMENT PROTEIN CUCUMBER GREEN MOTILE MOSAIC VIRUS 170-197 (WATERMELON STRAIN SH) PMOVP_ORSV MOVEMENT PROTEIN ODONTOGLOSSUM RINGSPOT VIRUS 53-90 PMOVP_TOMVA MOVEMENT PROTEIN TOMATO MOSAIC VIRUS (STRAIN LIIA) 46-80 PMOVP_TOMVL MOVEMENT PROTEIN TOMATO MOSAIC VIRUS (STRAIN LII) 46-80 PMTC1_CHVNI MODIFICATION METHYLASE CVIB1 CHLORELLA VIRUS NC-1A 143-170 229-256 PMTC2_CHYPI MODIFICATION METHYLASE CVIAII PARAMECIUM BURSARIA CHLORELLA VIRUS 1 4-31 130-172 PMYC_AVIM2 MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS VIRUS CMI1 232-266 375-402 PMYC_AVIMC MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS VIRUS MC29 233-267 376-403 PMYC_AVIMD MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS VIRUS HBI 233-267 376-403 PMYC_AVIME MYC TRANSFORMING PROTEIN AVIAN RETROVIRUS MH2E21 239-261 377-404 PMYC_AVIOK MYC TRANSFORMING PROTEIN AVIAN RETROVIRUS OK10 227-261 370-397 PMYC_FLV MYC TRANSFORMING PROTEIN FELINE LEUKEMIA VIRUS 393-420 PMYC_FLVTI MYC TRANSFORMING PROTEIN FELINE LEUKEMIA PROVIRUS FTT 393-420 PNCAP_BEV NUCLEOCAPSID PROTEIN BERNE VIRUS 49-76 129-156 PNCAP_BUNLC NUCLEOCAPSID PROTEIN BUNYAVIRUS LA CROSSE 85-112 PNCAP_BUNSH NUCLEOCAPSID PROTEIN BUNYAVIRUS SNOWSHOE HARE 96-123 PNCAP_BUNYW NUCLEOCAPSID PROTEIN BUNYAMWERA VIRUS 48-75 189-220 PNCAP_CCHFV NUCLEOCAPSID PROTEIN CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS (ISOLATE 223-271 C680JI) PNCAP_CDVO NUCLEOCAPSID PROTEIN CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 140-174 PNCAP_CHAV NUCLEOCAPSID PROTEIN CHANDIPURA VIRUS (STRAIN I653514) 40-74 PNCAP_CVCAE NUCLEOCAPSID PROTEIN CANINE ENTERIC CORONAVIRUS (STRAIN K378) 191-227 PNCAP_CVPPU NUCLEOCAPSID PROTEIN PORCINE TRANSMISSIBLE GASTROENTERITIS 191-227 (STRAIN PURD PNCAP_CVPR8 NUCLEOCAPSID PROTEIN PORCINE RESPIRATORY CORONAVIRUS (STRAIN 191-227 86/137004/BRITISH ISOLAT PNCAP_CVPRM NUCLEOCAPSID PROTEIN PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 191-227 PNCAP_DUGBV NUCLEOCAPSID PROTEIN DUGBE VIRUS 238-263 PNCAP_FIPV NUCLEOCAPSID PROTEIN FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 182-209 PNCAP_HAZVI NUCLEOCAPSID PROTEIN HAZARA VIRUS (ISOLATE JC280) 6-33 256-283 PNCAP_HRSVI NUCLEOCAPSID PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 4-31 74-108 112-141 B/STRAIN 18537) PNCAP_HRSVA NUCLEOCAPSID PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 4-31 PNCAP_LASSG NUCLEOCAPSID PROTEIN LASSA VIRUS (STRAIN GA391) 64-99 147-174 PNCAP_LASSJ NUCLEOCAPSID PROTEIN LASSA VIRUS (STRAIN JOSIAH) 64-99 467-504 PNCAP_LYCVA NUCLEOCAPSID PROTEIN LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN 64-97 ARMSTRONG) PNCAP_MAGV NUCLEOCAPSID PROTEIN MAGUARI VIRUS 41-68 192-219 PNCAP_MOPEI NUCLEOCAPSID PROTEIN MOPEIA VIRUS 64-99 PNCAP_PIIHC NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 377-404 455-482 PNCAP_PIIHW NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN 377-404 444-488 WASHINGTON/1957) PNCAP_PI3H4 NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH) 47885 376-403 PNCAP_PTPV NUCLEOCAPSID PROTEIN PUNTA TORO PHLEBOVIRUS 3-30 PNCAP_PUUMH NUCLEOCAPSID PROTEIN PUUMALA VIRUS (STRAIN HALLNAS B1) 2-29 PNCAP_PUUMS NUCLEOCAPSID PROTEIN PUUMALA VIRUS (STRAIN SOTKAMO) 2-29 PNCAP_PVM NUCLEOCAPSID PROTEIN PNEUMONIA VIRUS OF MICE 93-120 PNCAP_RABVA NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN AVOI) 133-167 PNCAP_RABVP NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN PV) 133-167 PNCAP_RABVS NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN SAD B19) 133-167 PNCAP_SENDS NUCLEOCAPSID PROTEIN SENDAJ VIRUS (STRAIN Z/HOST MUTANTS) 363-404 PNCAP_SENDE NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN ENDER5) 363-404 PNCAP_SENDZ NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN Z) 363-404 PNCAP_SFSV NUCLEOCAPSID PROTEIN SANDFLY FEVER SICILIAN VIRUS 4-31 PNCAP_SV41 NUCLEOCAPSID PROTEIN SIMIAN VIRUS 41 507-534 PNCAP_TACV NUCLEOCAPSID PROTEIN TACARIBE VIRUS 50-77 PNCAP_TOSV NUCLEOCAPSID PROTEIN TOSCANA VIRUS 6-33 PNCAP_UUK NUCLEOCAPSID PROTEIN UUKUNIEM1 VIRUS 68-102 PNCAP_VHSV0 NUCLEOCAPSID PROTEIN VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71) 284-314 PNCAP_VHSVM NUCLEOCAPSID PROTEIN VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 149-176 284-314 MAKAH) PNCAP_VSVIG NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (SEROTYPE) 56-83 INDIANA/STRAIN GLASGOW PNCAP_VSVJO NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (SEROTYPE NEW) JERSEY/ 67-94 338-365 STRAIN OGDEN PNCAP_VSVSJ NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 56-83 PNEF_HVIEL NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 81-119 PNEF_HVIND NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK 81-119 ISOLATE) PNEF_HVIZ6 NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6 86-124 ISOLATE) PNEF_SIVAI NEGATIVE FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE 96-137 GRI-1) PNRAM_IABDA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/BLACK 47-81 DUCK/AUSTRALIA/702/78) PNRAM_IACAO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82 33-64 PNRAM_IACHI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 16-43 50-91 PNRAM_IADA1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76) 51-81 PNRAM_IADGE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/DUCK/GERMANY/49) 21-48 PNRAM_IAFPW NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 10-48 52-80 197-224 VIRUS/WEYBRIDGE) PNRAM_IAHCO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/74) 197-224 386-413 PNRAM_IAHKI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/81) 5-44 46-76 364-400 PNRAM_IAKIE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 50-81 PNRAM_IALEN NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 50-81 PNRAM_IAMEI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN 16-43 50-81 A/MEMPHIS/1/71H-A/BELLAMY/42N) PNRAM_IAPAR NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73) 16-43 50-81 PNRAM_IAPUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 16-43 PNRAM_IARUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 49-88 JERSEY/60/85) PNRAM_IATRA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75) 49-82 PNRAM_IAUSS NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 50-81 PNRAM_IAWHM NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84) 49-88 PNRAM_IAWIL NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 16-43 PNRAM_INBLE NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/LEE/40) 4-35 PNS1_SIDEV PROB NONSTRUC PRO PRECURSOR BOMBYX DENSONUCLEOSIS VIRUS 283-310 PNS2_SIDEY PROB NONSTRUC PRO PRECURSOR BOMBYX DENSONUCLEOSIS VIRUS 42-69 PNSS_INSVN NON-STRUCTURAL PROTEIN IMPATIENS NECROTIC SPOT VIRUS (STRAIN NL-07) 95-122 PNSS_TSWVB NON-STRUCTURAL PROTEIN TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE 5-32 432-462 CPNIII/BR-01) PNSS_TSWVL NON-STRUCTURAL PROTEIN TOMATO SPOTTED WILT VIRUS (STRAIN L3) 5-32 PNTP1_AMEPV NUCLEOSIDE TRIPHOSPHATASE 1 AMSACTA MOOREI ENTOMOPOXVIRUS 28-69 PNTP1_CBEPV NUCLEOSIDE TRIPH0SPHATASE 1 CHORISTONEURA BIENNIS ENTOMOPOXVIRUS 122-166 347-374 524-551 PNTP1_VACCC NUCLEOSIDE TRIPHOSPHATASE 1 VACCINIA VIRUS (STRAIN COPENHAGEN) 65-92 394-421 514-587 PNTP1_VACCV NUCLEOSIDE TRIPHOSPHATASE 1 VACCINIA VIRUS (STRAIN WR) 65-92 394-421 514-587 PNTP1_VARV NUCLEOSIDE TRIPHOSPHATASE 1 VARIOLA VIRUS 300-327 420-447 455-493 PP100_HSV6U MAJOR ANTIGENIC STRUCTL PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 81-108 189-216 688-715 785-812 PPAP1_VACCC POLY(A) POL CATALYTIC SUBUNIT VACCINIA VIRUS (STRAIN COPENHAGEN) 88-115 PPAP1_VACCV POLY(A) POL CATALYTIC SUBUNIT VACCINIA VIRUS (STRAIN WR) 88-115 PPAP1_VARV POLY(A) POL CATALYTIC SUBUNIT VARIOLA VIRUS 88-115 PPAP2_CAPVK POLY(A) POL REG SUBUNIT CAPRIPOXVIRUS (STRAIN KS-1) 118-145 PPAP2_FOWPV POLY(A) POL REG SUBUNIT FOWLPOX VIRUS 27-54 PPE12_NPVAC 12.1 KD PROTEIN IN PE 5′REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 61-105 VIRUS PPE12_NPVOP 11.5 KD PROTEIN IN P26 5′REGION ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 61-95 VIRUS PPE38_NPVAC MAJOR IMMEDIATE EARLY PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 204-248 VIRUS PPE48_NPVAC 48.3 KD IN PE-P26 INTERGENIC REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 4-38 51-78 VIRUS PPENE_ADEGX PENTON PROTEIN AVIAN ADENOVIRUS GAL10 (STRAIN SA2) 96-123 PPOL1_BAYMG GENOME POLYPROTEIN 1 BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) 1272- 1775- 2236- 1299 1802 2263 PPOL1_BAYMI GENOME POLYPROTEIN 1 BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1) 1774- 2234- 1801 2261 PPOL1_GCMV RNA1 POLYPROTEIN HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS 481-508 1909- 1941 PPOL1_GFLV RNA1 POLYPROTEIN GRAPEVINE FANLEAF VIRUS 170-197 636-677 958-985 1161- 1195 PPOL1_TBRVS RNA1 POLYPROTEIN TOMATO BLACK RING VIRUS (STRAIN S) 1096- 1123 PPOL2_BAYMG GENOME POLYPROTEIN 2 BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) 240-281 801-828 PPOL2_BAYMJ GENOME POLYPROTEIN 2 BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1) 240-267 801-828 PPOL2_GCMV RNA2 POLYPROTEIN HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS 11-38 PPOL2_GFLV RNA2 POLYPROTEIN GRAPEVINE FANLEAF VIRUS 549-576 PPOL2_TRSVR RNA2 POLYPROTEIN TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY) 982- 1009 PPOLG_BOVEV GENOME POLYPROTEIN BOVINE ENTEROVIRUS (STRAIN VG-5-27) 17-44 1030- 1145- 1057 1172 PPOLG_BVDVN GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL) 629-660 1082- 1303- 2233- 2476- 2609- 3613- 1112 1330 2261 2503 2636 3642 PPOLG_BVDVS GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1) 1303- 2143- 2519- 2802- 3523- 1333 2171 2546 2829 3550 PPOLG_BYMV GENOME POLYPROTEIN BEAN YELLOW MOSAIC VIRUS 96-123 PPOLG_COXA2 GENOME POLYPROTEIN COXSACKIEVIRUS A21 (STRAIN COE) 7-34 664-694 1062- 1900- 1099 1930 PPOLG_COXA9 GENOME POLYPROTEIN COXSACKIEVIRUS A9 (STRAIN GRIGGS) 1040- 1076 PPOLG_COXB1 GENOME POLYPROTEIN COXSACKIEVIRUS B1 645-672 841-868 1021- 1057 PPOLG_COXB3 GENOME POLYPROTEIN COXSACKIEVIRUS B3 1024- 1881- 1060 1908 PPOLG_COXB4 GENOME POLYPROTEIN COXSACKIEVIRUS B4 644-673 1022- 1058 PPOLG_COXB5 GENOME POLYPROTEIN COXSACKIEVIRUS B5 1024- 1060 PPOLG_CYVY GENOME POLYPROTEIN CLOVER YELLOW VEIN VIRUS 120-154 PPOLG_DEN1S GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90) 1858- 2890- 2989- 1885 2933 3016 PPOLG_DEN26 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681) 1544- 1858- 2908- 2982- 3117- 1571 1885 2935 3016 3147 PPOLG_DEN27 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53) 1544- 1858- 2485- 2908- 2982- 3117- 1571 1885 2519 2935 3016 3147 PPOLG_DEN21 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN JAMAICA) 1544- 1858- 2908- 3117- 3346- 1571 1885 2935 3147 3373 PPOLG_DEN2P GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN PR159/S1) 1544- 1858- 2905- 2979- 3114- 3343- 1571 1885 2932 3013 3144 3370 PPOLG_DEN2T GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974) 1134- 1448- 1161 1475 PPOLG_DEN3 GENOME POLYPROTEIN DENGUE VIRUS TYPE 3 837-864 1542- 1857- 2494- 2980- 3345- 1569 1884 2521 3014 3372 PPOLG_DEN4 GENOME POLYPROTEIN DENGUE VIRUS TYPE 4 2885- 2977- 3342- 2930 3011 3369 PPOLG_EC11G GENOME POLYPROTEIN ECHOVIRUS II (STRAIN GREGORY) 213-249 PPOLG_EMCV GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS 70-108 1484- 1522- 1518 1563 PPOLG_EMCVB GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-B 70-97 1486- 1524- NONDIABETOGENIC) 1520 1565 PPOLG_EMCVD GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-D 70-97 1486- 1524- DIABETOGENIC) 1520 1565 PPOLG_ENMG3 GENOME POLYPROTEIN MENGO ENCEPHALOMYOCARDITIS VIRUS (STRAIN 37A) 70-108 PPOLG_ENMGO GENOME POLYPROTEIN MENGO ENCEPHALOMYOCARDITIS VIRUS 3-41 PPOLG_FMDV1 GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61) 302-329 1119- 1146 PPOLG_FMDVA GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12) 301-328 1119- 1146 PPOLG_FMDVO GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAINS OIK AND 1119- OIBFS) 1146 PPOLG_FMDVS GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN CI-SANTA PAU 101-128 [C-S8]) PPOLG_HCVI GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE 1) 702-729 PPOLG_HCVA GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN ALFORT) 699-726 1195- 1303- 1434- 3068- 3406- 1232 1333 1461 3095 3440 PPOLG_HCVB GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN BRESCIA) 699-726 1195- 3068- 3406- 3532- 1232 3095 3440 3559 PPOLG_HCVBK GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE BK) 702-729 1045- 1072 PPOLG_HCVH GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE 11) 702-729 1045- 1072 PPOLG_HCVJ6 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J6) 374-401 2089- 2116 PPOLG_HCVJ8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J8) 1049- 2089- 1076 2116 PPOLG_HCVJA GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE JAPANESE) 378-405 702-729 1045- 1072 PPOLG_HCVJT GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-JT) 702-729 1045- 1072 PPOLG_HCVTW GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE TAIWAN) 702-729 1045- 1072 PPOLG_HPAV2 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 24A) 203-237 1021- 1117- 1454- 1048 1149 1481 PPOLG_HPAV4 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 43C) 203-237 1021- 1117- 1434- 1048 1149 1481 PPOLG_HPAV8 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 18F) 203-237 1021- 1117- 1434- 1048 1149 1481 PPOLG_HPAVC GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN CR326) 203-237 PPOLG_HPAVG GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN GA76) 182-216 PPOLG_HPAVH GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN HM-175) 203-237 1021- 1103- 1048 1149 PPOLG_HPAVL GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN LA) 203-237 1021- 1103- 1048 1149 PPOLG_HPAVM GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN MBB) 203-237 1021- 1103- 1048 1149 PPOLG_HPAVS GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27) 207-241 1025- 1115- 1052 1192 PPOLG_HPAVT GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS (STRAIN CY-145) 203-237 PPOLG_HRV14 GENOME POLYPROTEIN HUMAN RHINOVIRUS 14 17-44 559-586 652-679 1877- 1904 PPOLG_HRV1B GENOME POLYPROTEIN HUMAN RHINOVIRUS 1B 1132- 1855- 1159 1882 PPOLG_HRV2 GENOME POLYPROTEIN HUMAN RHINOVIRUS 2 1125- 1552- 1152 1593 PPOLG_HRV89 GENOME POLYPROTEIN HUMAN RHINOVIRUS 89 883-910 1141- 1566- 1862- 1168 1607 1869 PPOLG_HUEV7 GENOME POLYPROTEIN HUMAN ENTEROVIRUS 70 (STRAIN J670/71) 876-910 PPOLG_IBDVO STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN OH) 231-277 PPOLG_JAEV1 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14) 214-248 983- 2796- 1010 2823 PPOLG_JAEV5 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V)) 214-248 983- 2796- 1010 2823 PPOLG_JAEVJ GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982) 214-248 983- 2796- 1010 2823 PPOLG_JAEVN GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA) 141-175 911-938 PPOLG_KUNIM GENOME POLYPROTEIN KUNJIN VIRUS (STRAIN MRM61C) 980- 1007 PPOLG_LANVT GENOME POLYPROTEIN LANGAT VIRUS (STRAIN TP21) 431-465 1634- 1661 PPOLG_LANVY GENOME POLYPROTEIN LANGAT VIRUS (STRAIN YELANTSEV) 431-465 PPOLG_LIV GENOME POLYPROTEIN LOUPING ILL VIRUS 431-465 PPOLG_LIVSB GENOME POLYPROTEIN LOUPING ILL VIRUS (STRAIN SB 526) 151-185 PPOLG_MCFA GENOME POLYPROTEIN MOSQUITO CELL FUSING AGENT 671-698 3056- 3303- 3083 3330 PPOLG_MDMV GENOME POLYPROTEIN MAIZE DWARF MOSAIC VIRUS 10-37 PPOLG_MVEV GENOME POLYPROTEIN MURRAY VALLEY ENCEPHALITIS VIRUS 212-256 PPOLG_OMV GENOME POLYPROTEIN ORNITHOGALUM MOSAIC VIRUS 24-51 946-973 PPOLG_PEMVC GENOME POLYPROTEIN PEPPER MOTILE VIRUS (CALIFORNIA ISOLATE) 377-404 704-738 831-838 900-927 1167- 1485- 1787- 2433- 1201 1512 1814 2464 PPOLG_POLIM GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 1060- 1901- 1100 1931 PPOLG_POL1S GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN SABIN) 670-697 1063- 1903- 1101 1933 PPOLG_POL2L GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN LANSING) 1061- 1901- 1099 1931 PPOLG_POL2W GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN W-2) 1061- 1901- 1099 1931 PPOLG_POL32 GENOME POLYPROTEIN POLIOVIRUS TYPE 3 (STRAIN 23127) 1060- 1900- 1098 1930 PPOLG_POL3L GENOME POLYPROTEIN POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND P3/LEON 1060- 1900- 12A[I]B) 1098 1930 PPOLG_PPVD GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN D) 921-948 1498- 2771- 1525 2798 PPOLG_PPVEA GENOME POLYPROTEIN PLUM POX POTYVIRUS STRAIN EL AMAR) 1146- 1187 PPOLG_PPVNA GENOME POLYPROTEIN PLUM POX POTYVIRUS (ISOLATE NAT) 920-947 1497- 2770- 1524 2800 PPOLG_PPVRA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN RANKOVIC) 920-947 1497- 2770- 1524 2797 PPOLG_PRSVH GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA) 500-527 PPOLG_PRSVP GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1) 391-418 PPOLG_PRSVW GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN W) 489-516 PPOLG_PSBMV GENOME POLYPROTEIN PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPDI) 271-315 1132- 1510- 1177 1537 PPOLG_PVYC GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN C) (PVY) 433-460 701-735 PPOLG_PVYHU GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN HUNGARIAN) 218-245 433-460 701-735 1486- 1777- 1513 1811 PPOLG_PVYN GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN N) 433-460 701-735 1486- 1777- 1513 1811 PPOLG_PVYO GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN O) 433-460 701-735 PPOLG_PYFV1 GENOME POLYPROTEIN PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121) 1124- 2707- 1151 2734 PPOLG_SUMVS GENOME POLYPROTEIN SUGARCANE MOSAIC VIRUS (STRAIN SC) 10-37 PPOLG_SVDVH GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76) 1024- 1060 PPOLG_SVDVU GENOME POLYPROTEIN 1024-1060 PPOLG_TBEVS GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN) 87-121 234-272 1632- 2265- 2909- 1661 2292 2936 PPOLG_TBEVW GENOME POLYPROTEIN BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE) 1632- 1659 PPOLG_TEV GENOME POLYPROTEIN TOBACCO ETCH VIRUS 845-872 1148- 1416- 1773- 1175 1443 1800 PPOLG_TMEVB GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN 79-117 200-227 BEAN 8386) PPOLG_TMEVD GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN 90-117 200-227 DA) PPOLG_TMEVG GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN 90-117 200-227 GDVII) PPOLG_TUMV GENOME POLYPROTEIN TURNIP MOSAIC VIRUS 232-262 773-800 PPOLG_TVMV GENOME POLYPROTEIN TOBACCO VEIN MOTTLING VIRUS 406-433 670-704 2708- 2742 PPOLG_WMV2 GENOME POLYPROTEIN WATERMELON MOSAIC VIRUS II 202-229 PPOLG_WNV GENOME POLYPROTEIN WEST NILE VIRUS 210-254 3385- 3412 PPOLG_YEFVI GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN 17D) 436-463 PPOLG_YEFV2 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204) 436-463 PPOLG_ZYMY GENOME POLYPROTEIN ZUCCHINI YELLOW MOSAIC VIRUS 69-96 PPOLH_POL1M GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 1063- 1903- 1101 1933 PPOLN_EEVVT NONSTRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN 1402- 1894- TRINIDAD DONKEY) 1467 1921 PPOLN_FCVC6 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN CFI/68 FIV) 445-472 PPOLN_FCVF9 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN F9) 1034- 1061 PPOLN_HEVBU NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN BURMA) 219-246 349-376 PPOLN_HEVME NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN MEXICO) 219-246 349-376 PPOLN_HEVMY N-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN MYANMAR) 219-246 349-376 PPOLN_HEVPA NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN PAKISTAN) 218-245 348-375 PPOLN_MIDDV NONSTRUCTURAL POLYPROTEIN MIDDELBURG VIRUS 955-982 PPOLN_ONNVG NONSTRUCTURAL POLYPROTEIN O′NYONG-NYONG VIRUS (STRAIN GULU) 2453- 2480 PPOLN_RHDV NON-STRUCTURAL POLYPROTEIN RABBIT HEMORRHAGIC DISEASE VIRUS 313-347 1657- 1684 PPOLN_RRVN NONSTRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN NB5092) 1057- 1477- 2418- 1084 1504 2445 PPOLN_RRVT NONSTRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) 146-173 1087- 1114 PPOLN_RUBVT NONSTRUCTURAL POLYPROTEIN RUBELLA VIRUS (STRAIN THERIEN) 2060- 2087 PPOLN_SPV NONSTRUCTURAL POLYPROTEIN SEMLIKI FOREST VIRUS 1154- 1181 PPOLN_SINDO NONSTRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5) 936-970 PPOLN_WEEV NONSTRUCTURAL POLYPROTEIN WESTERN EQUINE ENCEPHALITIS VIRUS 4-31 PPOLS_IBDV5 STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70) 231-258 PPOLS_IBDVA STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 231-258 AUSTRALIAN 002-73) PPOLS_IBDVC STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN CU-1) 231-258 PPOLS_IBDVE STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN E) 231-258 PPOLS_IBDVP STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 212-239 PBG-98) PPOLS_IBDVS STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN STC) 231-258 PPOLS_ONNVG STRUCTURAL POLYPROTEIN O′NYONG-NYONG VIRUS (STRAIN GULU) 356-383 PPOLS_RRVN STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN NB 5092) 939-973 PPOLS_RRVT STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) 939-973 PPOLS_SINDO STRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5) 1138- 1165 PPOLS_SINDV STRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAINS HRSP AND HRLP) 1138- 1165 PPOLS_WEEV STRUCTURAL POLYPROTEIN WESTERN EQUINE ENCEPHALITIS VIRUS 920-947 PPOL_BAEVM POL POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 673-706 715-742 PPOL_CAEVC POL POLYPROTEIN CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) 886-924 PPOL_COYMV PUTATIVE POLYPROTEIN COMMELINA YELLOW MOTTLE VIRUS 333-360 838-865 1075- 1178- 1313- 1102 1205 1347 PPOL_EIAV9 POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) 472-505 826-853 PPOL_EIAVC POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 472-505 826-853 PPOL_EIAVY POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) 471-504 825-852 PPOL_FENVI POL POLYPROTEIN FELINE ENDOGENOUS VIRUS ECE1 532-599 627-654 PPOL_FIYPE POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA) 442-473 PPOL_FMVD ENZYMATIC POLYPROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 403-430 PPOL_GALV POL POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 535-562 676-703 PPOL_HTLIA POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK) 674-712 PPOL_HTLIC POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBIIEAN 674-712 ISOLATE) PPOL_HVIA2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 218-245 620-661 ISOLATE) PPOL_HVIB1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 230-257 637-673 ISOLATE) PPOL_HVIB5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) 230-257 632-673 PPOL_HVIBR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU 230-257 632-673 ISOLATE) PPOL_HVIEL POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) 217-244 624-660 PPOL_HVIH2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HBX2 218-245 620-661 921-951 ISOLATE) PPOL_HVIJR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF 222-249 624-665 ISOLATE) PPOL_HVIMA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL 217-244 476-510 619-660 ISOLATE) PPOL_HVIMN POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) 221-248 623-664 PPOL_HVINS POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 218-245 625-661 ISOLATE) PPOL_HVIND POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK 217-244 624-660 ISOLATE) PPOL_HVIOY POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) 218-245 620-661 PPOL_HVIPV POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 230-257 637-673 ISOLATE) PPOL_HVIRH POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT 217-244 619-660 ISOLATE) PPOL_HVIU4 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN 217-244 513-540 619-660 UGANDAN/ISOLATE U PPOL_HV1Z2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 217-244 619-660 ISOLATE) PPOL_HV2BE POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 491-582 BEN) PPOL_HV2CA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 471-562 CAM2) PPOL_HV2D1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 509-600 D194) PPOL_HV2D2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 491-568 D205,7) PPOL_HV2G1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 471-562 GHANA-1) PPOL_HV2NZ POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 471-529 NIH-Z) PPOL_HV2RO POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 472-563 ROD) PPOL_HV2SB POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE 473-562 SBLISY) PPOL_HV2ST POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST) 491-582 PPOL_IPHA PUTATIVE POL POLYPROTEIN HAMSTER INTRACISTERNAL A-PARTICLE 200-227 354-381 461-499 PPOL_IPMA PUTATIVE POL POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 211-238 302-329 400-427 PPOL_IPMAI PROBABLE POL POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 130-157 221-248 PPOL_JSRV POL POLYPROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 204-231 PPOL_MLVAX POL POLYPROTEIN AKR MURINE LEUKEMIA VIRUS 453-480 PPOL_MLVAV POL POLYPROTEIN AKV MURINE LEUKEMIA VIRUS 805-832 PPOL_MLVRD POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 716-743 805-832 PPOL_MLVRK POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN) 101-128 190-217 PPOL_MPMV POL POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 574-612 670-697 PPOL_OMVVS POL POLYPROTEIN OVINE LENTIVIRUS (STRAIN SA-OMVV) 67-94 471-505 873-900 PPOL_RSVP POL POLYPROTEIN ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 797-824 PPOL_RTBV POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS 7-44 59-93 176-203 202-229 410-437 447-476 1022- 1049 PPOL_RTBVP POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) 7-44 59-93 176-203 202-229 410-437 447-476 1022- 1049 PPOL_SFV1 POL POLYPROTEON SIMIAN FOAMY VIRUS (TYPE 1) 427-454 PPOL_SIVA1 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 431-458 547-574 637-671 PPOL_SIVA2 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM266 ISOLATE) 45-72 PPOL_SIVA3 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM385 ISOLATE) 71-98 PPOL_SIVAG POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 436-463 482-516 642-669 PPOL_SIVAI POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE 478-515 GRI-1) PPOL_SIVAT POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 657-691 PPOL_SIVCZ POL POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS SIV(CPZ)) 242-269 626-685 PPOL_SIVGB POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 227-254 636-670 PPOL_SIVM1 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) 533-560 PPOL_SIVMK POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 533-560 PPOL_SIVS4 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) 496-523 PPOL_SIVSP POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) 499-526 PPOL_SMRVH POL POLYPROTEIN SQUIRREL MONKEY RETROVIRUS (SMRV-H) 601-628 PPOL_SOCMV ENZYMATIC POLYPROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 268-295 348-419 PPOL_SRV1 POL POLYPROTEIN SIMIAN RETROVIRUS SRV-1 578-612 670-697 PPOL_VILV POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514) 490-524 881-919 PPOL_VILV1 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS1) 89-116 490-524 881-919 PPOL_VILV2 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS2) 490-524 881-919 PPR73_MMTVB PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 288-315 PPR73_MMTVC PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H) 45-79 PPR73_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 167-201 PPYHD_CPVBM POLYHEDRIN PRECURSOR DOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS 37-71 PPYHD_NPVAC POLYHEDRIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 13-47 VIRUS PPYHD_NPVAS POLYHEDRIN AGROTIS SEGETUM NUCLEAR POLYHEDROSIS VIRUS 14-48 201-228 PPYHD_NPVBM POLYHEDRIN BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS 12-46 PPYHD_NPVBS POLYHEDRIN BUZURA SUPPRESSARIA NUCLEAR POLYHEDROSIS VIRUS 14-48 PPYHD_NPVHC POLYHEDRIN HYPHANTRIA CUNEA NUCLEAR POLYHEDROSIS VIRUS 13-40 PPYHD_NPVLD POLYHEDRIN LYMANTRIA DISPAR MULTICAPSID NUCLEAR 14-48 POLYHEDROSIS VIRUS PPYHD_NPVMB POLYHEDRIN MAMESTRA BRASSICAE NUCLEAR POLYHEDROSIS VIRUS 14-48 PPYHD_NPVOP POLYHEDRIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 13-47 VIRUS PPYHD_NPVOS POLYHEDRIN ORGYIA PSEUDOTSUGATA SINGLE CAPSID NUCLEAR 14-48 POLYHEDROSIS VIRUS PPYHD_NPVPF POLYHEDRIN PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID 14-48 POLYHEDROSIS VIRUS PPYHD_NPVSE POLYHEDRIN SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS VIRUS 14-48 (STRAIN US) PPYHD_NPVSF POLYHEDRIN SPODOPTERA FRUGIPERDA NUCLEAR POLYHEDROSIS VIRUS 14-48 PREV_SIVAT REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 41-68 PREV_VILV REV PROTEIN VISNA LENTIVIRUS (STRAIN 1514) 22-62 PRIRI_ASFM2 RIBONUC-DIPHOSPH REDUCT LARGE CHA AFRICAN SWINE FEVER VIRUS (ISOLATE MALAW1 LII, 20/1) 7-41 88-119 363-390 PRIR1_HCMVA RIBONUC-DIPHOSPH REDUCT LARGE CHA HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 622-649 PRIR1_HSVEB RIBONUC-DIPHOSPH REDUCT LARGE CHA EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 75-102 PRIR1_HSVSA RIBONUC-DIPHOSPH REDUCT LARGE CHA HERPES VIRUS SAIMIRI (STRAIN 11) 324-351 PRIR1_VACCC RIBONUC-DIPHOSPH REDUCT LARGE CHA VACCINIA VIRUS (STRAIN COPENHAGEN) 367-401 PRIR1_VACCV RIBONUC-DIPHOSPH REDUCT LARGE CHA VACCINIA VIRUS (STRAIN WR) 367-401 PRIR1_VARV RIBONUC-DIPHOSPH REDUCT LARGE CHA VARIOLA VIRUS 367-401 PRIR1_VZVD RIBONUC-DIPHOSPH REDUCT LARGE CHA VARICELLA-ZOSTER (STRAIN DUMAS) 119-146 PRIR2_HSVB3 RIBONUC-DIPHOSPH REDUCT SMALL CHA BOVINE HERPESVIRUS TYPE 1 (STRAIN 34) 90-117 PRP94_VACCV RNA-POL-ASSOC TRANS SPEC FACTOR VACCINIA VIRUS (STRAIN WR) 41-68 513-540 PRP94_VARV RNA-POL-ASSOC TRANS SPEC FACTOR VARIOLA VIRUS 41-75 77-104 513-540 PRPO1_VACCC DNA-DIRECTED RNA POL 147 KD VACCINIA VIRUS (STRAIN COPENHAGEN) 237-264 587-616 810-837 961-992 PRPO1_VACCV DNA-DIRECTED RNA POL 147 KD VACCINIA VIRUS (STRAIN WR) 237-264 587-616 810-837 961-992 1011- 1038 PRPO1_VARV DNA-DIRECTED RNA POL 147 KD VARIOLA VIRUS 237-264 587-616 810-837 961-992 PRPO2_CAPVK DNA-DIRECTED RNA POL 132 KD CAPRIPOXVIRUS (STRAIN KS-1) 19-65 114-155 PRPO2_COWPX DNA-DIRECTED RNA POL 132 KD COWPOX VIRUS 211-241 481-509 PRPO2_VACCV DNA-DIRECTED RNA POL 132 KD VACCINIA VIRUS (STRAIN WR) 211-241 481-509 PRPO2_VARV DNA-DIRECTED RNA POL 132 KD VARIOLA VIRUS 211-241 411-509 PRPO4_CAPYX DNA-DIRECTED RNA POL 35 KD CAPRIPOXVIRUS (STRAIN KS-1) 36-63 PRPO7_VACCV DNA-DIRECTED RNA POL 19 KD VACCINIA VIRUS (STRAIN WR) 8-35 43-70 PRPO7_VARV DNA-DIRECTED RNA POL 19 KD VARIOLA VIRUS 43-70 PRPOA_LELV RNA-DIRECTED RNA POLYMERASE LELYSTAD VIRUS 1533- 1560 PRPOL_EAV RNA-DIRECTED RNA POLYMERASE EQUINE ARTERITIS VIRUS 818-915 1639- 1673 PRRP1_IAKOR RNA-DIRECTED RNA POL SUB P1 INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 575-602 PRRP2_IAANN RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 119-146 PRRP2_IADH2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 119-146 PRRP2_IAFPR RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 119-146 VIRUS/ROSTOCK/34) PRRP2_IAGU2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS STRAIN A/GULL/MARYLAND/704/77) 119-146 PRRP2_IAHLO RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 119-146 PRRP2_IAHTE RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 119-146 PRRP2_IAKOR RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/XOREA/426/68) 119-146 PRRP2_IALE1 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 119-146 PRRP2_IALE2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 119-146 PRRP2_IAMAN RNA-DIRECTED KNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW 119-146 YORK/6750/78) PRRP2_IANT6 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/NT/60/68) 119-146 PRRP2_IAP10 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79) 119-146 PRRP2_IAPUE RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 119-146 PRRP2_IARUD RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 119-146 JERSEY/47/85) PRRP2_IASIN RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 119-146 PRRP2_IATKM RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN 119-146 A/TURKEY/MINNESOTA/83/80) PRRP2_IAV17 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 119-146 327-354 PRRP2_IAWIL RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 119-146 PRRP2_IA2H2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78) 119-146 PRRP2_IAZH3 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 119-146 PRRP2_IAZII RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 119-146 PRRP2_IAZTF RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77) 119-146 PRRP2_INBAC RNA-DIRECTED RNA POL SUB P2 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 157-194 ADAPTED]) PRRP2_INBAD RNA-DIRECTED RNA POL SUB P2 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 (WILD- 164-194 TYPE) PRRP2_INBSI RNA-DIRECTED RNA POL SUB P2 INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 157-194 PRRP3_IABUD RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN 537-367 A/BUDGERIGA/IIOKKAIDO/1/77) PRRP3_IACH1 RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 331-358 PRRP3_IAHPR RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 331-361 480-507 PRRP3_IAZTE RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77) 487-514 PRRP3_INBAC RNA-DIRECTED RNA POL SUB P3 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD- 2-33 472-509 ADAPTED]) PRRP3_INBAD RNA-DIRECTED RNA POL SUB P3 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 (WILD- 2-33 472-509 TYPE) PRRP3_INCBE RNA-DIRECTED RNA POL SUB P3 INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85) 509-536 PRRP3_INCII RNA-DIRECTED RNA POL SUB P3 INFLUENZA C VIRUS (STRAIN C/11/50) 509-536 PRRP3_THOGV RNA-DIRECTED RNA POL SUB P3 THOGOTO VIRUS 149-176 358-385 PRRPA_CVH22 RNA-DIRECTED RNA POLYMERASE HUMAN CORONAVIRUS (STRAIN 229E) 516-543 724-751 1971- 3781- 2008 3811 PRRPA_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 624-651 4326- 4353 PRRPB_BEV RNA-DIRECTED RNA POLYMERASE BERNE VIRUS 27-54 557-584 943-984 PRRPB_CVMA5 RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN A59) 885-915 1129- 1170 PRRPB_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 885-915 1129- 1170 PRRPB_CVPFS RNA-DIRECTED RNA POLYMERASE PORCINE TRANSMISSIBLE GASTROENTERITIS 20-47 353-380 385-412 CORONAVIRUS (STRAIN FS772 PRRPB_IBVB RNA DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 1510- 2296- 2547- BEAUDETTE) 1547 2331 2574 PRRPB_IBVK RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 165-200 416-443 PRRPL_BTV10 RNA-DIRECTED RNA POLYMERASE BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 1032- 1059 PRPPL_BUNYW RNA POLYMERASE BUNYAMWERA VIRUS 80-114 317-350 1802- 1892- 1861 1919 PRRPL_CDVO RNA POLYMERASE BETA SUBUNIT CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 24-51 PRRPL_HANTV RNA POLYMERASE HANTAAN VIRUS (STRAIN 76-118) 404-433 461-510 564-591 738-765 905-946 1993- 2020 PRRPL_HRSVA RNA POLYMERASE BETA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 103-192 210-237 667-694 788-815 1007- 1138- 1453- 1776- 2062- 1034 1165 1480 1803 2089 PRRPL_MABVM RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN MUSOKE) 991- 1143- 1490- 1811- 2029- 2216- 1018 1170 1524 1838 2067 2266 PRRPL_MABVP RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN POPP) 991- 1490- 2239- 1018 1524 2267 PRRPL_MEASE RNA POLYMERASE BETA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 95-122 196-223 2121- 2148 PRRPL_MUMPM RNA POLYMERASE BETA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 111-142 780-807 1602- 1632 PRRPL_NDVB RNA POLYMERASE BETA SUBUNIT NEW CASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 250-284 477-504 1979- 2013 PRRPL_P12HT RNA POLYMERASE BETA SUBUN1T HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 322-349 1564- 1687- 1901- 1598 1721 1946 PRRPL_P13H4 RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 52-86 136-163 608-638 1081- 1994- 2115- 1123 2036 2142 PRRPL_PUUMH RNA-DIRECTED RNA POLYMERASE PUUMALA VIRUS (STRAIN HALLNAS B1) 388-415 557-591 731-758 864-891 926-953 1940- 1998- 1971 2025 PRRPL_RABVP RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN PV) 204-231 605-632 2068- 2123 PRRPL_RABVS RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN SAD B19) 204-231 605-632 2068- 2123 PRRPL_RDV RNA-DIRECTED RNA POLYMERASE RICE DWARF VIRUS 855-882 PRRPL_RVFVZ RNA-DIRECTED RNA POLYMERASE RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) 1536- 1653- 1563 1687 PRRPL_SEND5 RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 629-656 1082- 1729- 2145- 1116 1756 2180 PRRPL_SENDE RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN ENDERS) 449-476 902-936 1549- 1965- 1576 2000 PRRPL_SENDZ RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z) 629-656 1082- 1729- 2145- 1116 1756 2180 PRRPL_SEOU8 RNA-DIRECTED RNA POLYMERASE SEOUL VIRUS (STRAIN 80-39) 461-488 564-591 731-758 905-932 PRRPL_SVSWR RNA POLYMERASE BETA SUBUNIT SIMIAN VIRUS 5 (STRAIN 21004-WR) 1096- 1250- 1680- 2120- 1123 1277 1710 2147 PRRPL_SYNV RNA POLYMERASE BETA SUBUNIT SONCHUS YELLOW NET VIRUS 825-859 1092- 1490- 1973- 2080- 1119 1520 2000 2107 PRRPL_TSWVB RNA-DIRECTED RNA POLYMERASE TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE 477-504 542-573 119- 1195- 1330- 1415- 1671- 1857- 2083- CPNHI/BR-01) 1150 1229 1357 1442 1698 1884 2110 2166- 2324- 2771- 2193 2368 2798 PRRPL_UUK RNA POLYMERASE UUKUNIEMI VIRUS 142-187 1037- 1304- 1071 1331 PRRPL_VSVJH RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW 1530- 1809- JERSEY/STRAIN HAZELHU 1557 1836 PRRPL_VSVJO RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW 1205- 1809- JERSEY/STRAIN OGDEN) 1232 1836 PRRPL_VSVSJ RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 1540- 1768- 1567 1798 PPRPO_ACLSV RNA-DIRECTED RNA POLYMERASE APPLE CHLOROTIC LEAF SPOT VIRUS 228-264 564-591 PRRPO_BWYVF PUTATIVE RNA-DIR RNA POL BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 356-383 PRRPO_BYDVI PUTATIVE RNA-DIR RNA POL BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PS1) 772-799 PRRPO_BYDVP PUTATIVE RNA-DIR RNA POL BARLEY YELLOW DWARF VIRUS (ISOLATE PAV) 772-799 PRRPO_BYDVR PUTATIVE RNA-DIR RNA POL BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV) 772-799 PRRPO_CARMV PUTATIVE RNA-DIR RNA POL CARNATION MOTTLE VIRUS 93-127 277-304 667-694 PRRPO_CGMVS PUTATIVE RNA-DIR RNA POL CUCUMBER GREEN MOTTLE MOSAIC VIRUS 387-414 1040- (WATERMELON STRAIN SH) 1067 PRRPO_IBDVS PUTATIVE RNA-DIR RNA POL AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70) 336-363 392-419 PRRPO_IBDVA PUTATIVE RNA-DIR RNA POL AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 661-688 717-744 AUSTRALIAN 002-73) PRRPO_IPNVJ PUTATIVE RNA-DIR RNA POL INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE 773-800 JASPER) PRRPO_IPNVS PUTATIVE RNA-DIR RNA POL INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE SP) 773-800 PRRPO_LYCVA RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN 834-886 1052- ARMSTRONG) 1079 PRRPO_PPMVS PUTATIVE RNA-DIR RNA POL PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) 402-429 709-736 1072- 1099 PRRPO_REOVD RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 1/STRAIN DEARING) 61-88 PRRPO_REOVL RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 1/STRAIN LANG) 61-88 PRRPO_ROTBR RNA-DIR RNA POL SUBUNIT VP1 BOVINE ROTAVIRUS (STRAIN RF) 68-95 218-245 791-818 PRRPO_ROTBU RNA-DIR RNA POL SUBUNIT VP1 BOVINE ROTAVIRUS (STRAIN UK) 65-95 218-245 791-841 975- 1002 PRRPO_ROTPC RNA-DIR RNA POL SUBUNIT VP1 BOVINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 3-44 75-102 363-390 543-585 PRRPO_ROTPG RNA-DIR RNA POL SUBUNIT VP1 BOVINE ROTAVIRUS (STRAIN GOTTFRIED 65-95 102-129 791-839 973- 1002 PRRPO_ROTS1 RNA-DIR RNA POL SUBUNIT VP1 SIMILAN 21 ROTAVIRUS (STRAIN SA11) 65-95 791-839 975- 1002 PRRPO_SCVLA RNA-DIRECTED RNA POLYMERASE SACCHAROMYCES CEREVISIAE VIRUS L-A 147-188 PRRPO_TACV RNA POLYMERASE TACARIBE VIRUS 163-204 241-271 1107- 1978- 1134 2008 PRRPO_TMGMV PUTATIVE RNA-DIR RNA POL TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 230-257 1316- 1397- 1343 1424 PRRPP_BRSVA RNA POLYMERASE ALPHA SUBUNIT BOVINE RESPIRATOR SYNCYTIAL VIRUS (STRAIN A51908) 99-133 PRRPP_CDVO RNA POLYMERASE ALPHA SUBUNIT CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 315-370 PRRPP_HRSV RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS 99-141 PRRPP_HRSV1 RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 99-141 B/STRAIN 18537) PRRPP_HRSVA RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 99-141 PRRPP_HRSVL RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 99-141 A/STRAIN LONG) PRRPP_MEASE RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 315-370 PRRPP_MEASI RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN IP-3-CA) 315-370 PRRPP_MEASY RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN YAMAGATA-1) 315-370 PRRPP_PIIHB RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35) 84-111 234-261 375-416 PRRPP_PIIHC RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 84-111 234-261 375-416 PRRPP_PIIHD RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-5/73) 84-111 232-262 375-416 PRRPP_PIIHE RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/83) 84-111 244-271 375-416 PRRPP_P12H RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS 167-194 222-256 PRRPP_P12HT RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 167-194 222-256 PRRPP_P13B RNA POLYMERASE ALPHA SUBUNIT BOVINE PARAINFLUENZA 3 VIRUS 34-91 255-282 285-314 PRRPP_P13H4 RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 114-144 269-299 PRRPP_P14HA RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 4-38 PRRPP_RABVP RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN PV) 93-127 PRRPP_SEND5 RNA POLYMERASE ALPHA SUBUNIT SENDA1 VIRUS (STRAIN Z/HOST MUTANTS) 330-357 379-420 PRRPP_SEND6 RNA POLYMERASE ALPHA SUBUNIT SENDA1 VIRUS (STRAIN 6/94) 330-357 379-420 PRRPP_SENDF RNA POLYMERASE ALPHA SUBUNIT SENDA1 VIRUS (STRAIN FUSHIMI) 330-357 379-420 PRRPP_SENDH RNA POLYMERASE ALPHA SUBUNIT SENDA1 VIRUS (STRAIN HARRIS) 330-357 379-420 PRRPP_SENDZ RNA POLYMERASE ALPHA SUBUNIT SENDA1 VIRUS (STRAIN Z) 330-357 379-420 PRRPP_SV5 RNA POLYMERASE ALPHA SUBUNIT SIMIAN VIRUS 5 (STRAIN W3) 205-232 PSODC_VACCV SUPEROXIDE DISMUTASE LIKE PROTEIN VACCINIA VIRUS (STRAIN WR) 72-99 PSODC_VARV SUPEROXIDE DISMUTASE LIKE PROTEIN VARIOLA VIRUS 72-99 PSPHR_AMEPV SPHEROIDIN AMSACTA MOOREI ENTOMOPOXVIRUS 91-118 140-167 227-261 361-390 PSPII_MYXVL SERPIN I MYXOMA VIRUS (STRAIN LAUSANNE) 286-313 PSPI2_VACCV SERINE PROTEINASE INHIBITOR 2 VACCINIA VIRUS (STRAIN WR) 59-86 PSPIA_VACCC SERINE PROTEASE INH 2 HOMOLOG VACCINIA VIRUS (STRAIN COPENHAGEN) 18-65 PT2C2_CHVPI TYPE II RESTRICTION ENZYME CVIAII PARAMECIUM BURSARIA CHLORELLA VIRUS 1 16-43 PTAA2_VACCV TRANS-ACTIVATOR PROTEIN A2 VACCINIA VIRUS 95-133 PTAG8_FOWPV TRANS-ACTIVATOR PROTEIN FPO FOWLPOX VIRUS 3-51 PTAG8_VACCV TRANS-ACTIVATOR PROTEIN GK1 VACCINIA VIRUS 3-30 PTAG8_VARV TRANS-ACTIVATOR PROTEIN GK1 VARIOLA VIRUS 3-30 PTALA_BFDV LARGE T ANTIGEN BUDGERIGAR FLEDGLING DISEASE VIRUS 291-318 PTALA_POVBO LARGE T ANTIGEN BOVINE POLYOMAVIRUS 502-537 PTALA_POVHA LARGE T ANTIGEN HAMSTER POLYOMAVIRUS 587-621 PTALA_POVLY LARGE T ANTIGEN LYMPHOTROPIC POLYOMAVIRUS 224-258 616-684 PTALA_POVM3 LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN 3) 513-540 PTALA_POVMA LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN A2) 511-538 PTALA_POVMC LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL- 508-535 PLAQUE) PTATR_NPVAC TRANS-ACT TRANS REG PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 407-434 489-523 532-559 VIRUS PTATR_NPVBM TRANS-ACT TRANS REG PROTEIN BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS 412-439 494-528 537-564 PTATR_NPVOP TRANS-ACT TRANS REG PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 512-554 VIRUS PTEGU_EBV LARGE TEGUMENT PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 145-172 1215- 1344- 1876- 1242 1371 1903 PTEGU_HCMVA PROBABLE LARGE TEGUMENT PROTEIN HUMAN CYTOMEGALO VIRUS (STRAIN AD169) 1251- 2202- 1281 2229 PTEGU_HSVII LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 667-694 1673- 1710 PTEGU_HSV6G LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 102-129 228-262 567-611 962-993 1098- 1661- 1884- 1181 1688 1911 PTEGU_HSVEB LARGE TEGUMENT PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 229-256 566-593 1205- 1232 PTEGU_HSVSA PROBABLE LARGE TEGUMENT PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 524-607 672-700 777-814 846-808 949-986 990- 1467- 2102- 1017 1497 2135 PTEGU_VZVD LARGE TEGUMENT PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 1121- 1579- 1158 1609 PTERM_ADE07 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 7 375-413 PTMAF-AVIS4 TRANSFORMING PROTEIN MAF AVIAN MUSCULOAPONEUROTIC FIBROSARCOMA VIRUS 302-336 AS42 PTOP1_SFVKA DNA TOPOISOMERASE I SHOPE FIBROMA VIRUS (STRAIN KASZA) 38-65 132-176 PTOP1_VACCV DNA TOPOISOMERASE I VACCINIA VIRUS 38-65 PTOP1_VARY DNA TOPOISOMERASE I VARIOLA VIRUS 38-65 PTOP2_ASFM2 DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI LIL 20/1) 902-936 PTYSY_HSVAT THYMIDYLATE SYNTHASE HERPES VIRUS ATELES 116-143 PTYSY_HSVSA THYMIDYLATE SYNTHASE HERPES VIRUS SAIMIRI (STRAIN 11) 120-147 PUL06_EBV VIRION PROTEIN BBRF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 115-142 313-340 542-569 PUL06_HSVII VIRION PROTEIN UL6 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 586-613 PUL06_HSVEB VIRION GENE 56 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 640-667 PUL06_HSVSA VIRION GENE 43 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 15-42 302-358 368-402 PUL08-HCMVA HYPOTHETICAL PROTEIN ULB HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 6-47 PUL11_DV HYPOTHETICAL PROTEIN BBFLI EPSTEIN-BARR VIRUS (STRAIN B95-8) 15-42 PUL13_HCMVA HYPOTHETICAL PROTEIN UL13 HUMAN CYTOMEGALO VIRUS (STRAIN AD169) 347-374 PUL14_HSVEB HYPOTHETICAL GENE 48 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 247-286 PUL14_VZVD HYPOTHETICAL GENE 46 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 64-101 PUL16_HCMVA HYPOTHETICAL PROTEIN UL16 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 81-112 PUL20_HCMVA HYPOTH PRO UL20 PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 34-61 PUL21_HSVEB GENE 40 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 44-71 PUL21_VZVD GENE 38 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 380-407 PUL25_HSVSA VIRION GENE 19 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 34-61 204-231 362-389 PUL31_HCMVA HYPOTHETICAL PROTEIN UL3I HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 167-194 254-284 PUL32_HSVEB MAJOR ENVELOPE GLYCOPROTEIN 300 EQUINE HERPESVIRUS TYPE 1 345-375 PUL34_HSVII VIRION PROTEIN UL34 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 116-143 PUL34_HSVSA GENE 67 PROTEIN HERPES VIRUS SAIMIR (STRAIN 11) 208-235 PUL34_VZVD VIRION GENE 24 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 112-139 PUL35_HCMVA HYPOTHETICAL PROTEIN UL35 HUMAN CYTOMEGALOVIRUS STRAIN AD169) 535-562 PUL37_HSVII PROTEIN L/L37 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 470-497 853-884 PUL37_HSVEB GENE 23 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AD4P) 715-749 987- 1014 PUL37_HSVSA GENE 63 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 31-65 685-737 PUL37_VZVD GENE 21 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 107-134 485-532 719-746 976- 1003 PUL41_VZVD HOST SHUTOFF VIRION PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 330-364 PUL42_HSVII DNA BINDING PROTEIN UL42 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 231-258 PUL43_VZVD GENE 15 MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS STRAIN DUMAS) 129-156 312-349 PUL47_HCMVA PROTEIN UL47 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 114-148 448-485 763-790 802-853 PUL47_HSVII VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 488-515 PUL47_HSVIF VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 488-515 PUL47_HSVE4 97 KD ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 4 190-217 PUL50_HCMVA PROTEIN UL50 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 159-186 PUL52_EBV PROB DNA REPLICATION PROTEIN BSLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 185-212 787-814 PUL52_HSVEB DNA REPLICATION PROTEIN UL52 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 193-220 943-970 PUL52_HSVSA PROB DNA REP GENE 56 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 130-157 PUL52_VZVD PROB DNA REP GENE 6 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 301-337 PUL59_HCMVA HYPOTHETICAL PROTEIN UL59 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 74-101 PUL70_HCMVA PROB DNA REP PROTEIN UL70 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 65-92 PUL73_HCMVA UL73 GLYCOPROTEIN PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 5-73 PUL73_HSVSA HYPOTHETICAL GENE 53 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 9-36 PUL74_HCMVA HYPOTHETICAL PROTEIN UL74 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 45-79 PUL87_EBV HYPOTHETICAL PROTEIN B(C)RF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 409-436 PUL87_HSV6U HYPOTHETICAL PROTEIN 5R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 536-563 729-768 PUL87_HSVSA HYPOTHETICAL GENE 24 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 582-609 PUL92_EBV HYPOTHETICAL PROTEIN BDLF4 EPSTEIN-BARR VIRUS (STRAIN B95-8) 107-144 168-196 PUL92_HSVSA HYPOTHETICAL GENE 31 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 92-122 PUL93_HCMVA PROTEIN UL93 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 26-53 314-381 PUL95_HCMVA HYPOTHETICAL PROTEIN UL95 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 37-71 PUL95_HSV6U HYPOTHETICAL PROTEIN 13R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 73-100 105-134 PULA4_HCMVA VIRION PROTEIN UL104 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 4-31 443-477 PULB9_HCMVA HYPOTHETICAL PROTEIN UL119 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 33-78 PULD0_HCMVA HYPOTHETICAL PROTEIN UL130 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 90-124 PUNG_HSVSA URACIL-DNA GLYCOSYLASE HERPESVIRUS SAIMIRI (STRAIN 11) 135-176 PUNG_SPVKA URACIL-DNA GLYCOSYLASE SHOPE FIBROMA VIRUS (STRAIN KASZA) 81-115 PUNG_VACCC URACIL-DNA GLYCOSYLASE VACCINIA VIRUS (STRAIN COPENHAGEN) 85-116 129-156 PUNG_VACCV URACIL-DNA GLYCOSYLASE VACCINIA VIRUS (STRAIN WR) 85-116 129-156 PUNG_VARV URACIL-DNA GLYCOSYLASE VARIOLA VIRUS 85-116 PUS09_HCMVA HYPOTHETICAL PROTEIN HXLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 20-47 PUS14_HCMVA HYPOTHETICAL PROTEIN HVLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 277-308 PUS18_HCMVA MEMBRANE PROTEIN HWLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 191-218 PV121_ASFL5 LIS 121-1 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN L1557) 2-29 PV125_AMVLE 125 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN) 702-729 PV137_ASFL5 LIS 137 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN L1557) 2-29 PV13K_TRVPL 16 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN PLB) 59-86 PV143_NPVAC HELICASE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 496-560 945-972 VIRUS PV16K_TRVPS 16 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN PSG) 79-113 PVIA_BBMV 1A PROTEIN BROAD BEAN MOTILE VIRUS 23-54 710-737 840-868 PVIA_BMV 1A PROTEIN BROME MOSAIC VIRUS 22-58 384-411 836-863 892-919 PVIA_CCMV 1A PROTEIN COWPEA CHLOROTIC MOTILE VIRUS 249-276 PVIA_CMVFN 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 11-38 PVIA_CMVO 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN O) 11-38 864-902 PVIA_CMVQ 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Q) 11-38 PVIA_PSVJ 1A PROTEIN PEANUT STUNT VIRUS (STRAIN J) 4-38 372-399 PVIA_TAV 1A PROTEIN TOMATO ASPERMY VIRUS 11-38 271-298 376-403 857-884 PV25K_NPVAC 25 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 4-31 VIRUS PV29K_PEBV 29.6 KD PROTEIN PEA EARLY BROWNING VIRUS 140-170 PV29K_TRVSY 29 KD PROTEIN TOBACCO RATTLE VIRUS 170-197 PV29K_TRVTC 29 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN TCM) 48-75 PV2A_BDMV 2A PROTEIN BROAD BEAN MOTTLE VIRUS 301-328 PV2A_CCMV 2A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS 178-205 PV2A_CMVFN 2A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 792-819 PV2A_PSVJ 2A PROTEIN PEANUT STUNT VIRUS (STRAIN J) 325-352 717-751 PV2A_TAV 2A PROTEIN TOMATO ASPERMY VIRUS 313-340 722-756 PV30_HCMVE 30 KD MAJOR EARLY PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN EISENHARDT) 194-221 PV30_TRVTC 29.1 KB PROTEIN TOBACCO RATTLE VIRUS (STRAIN TCM) 130-160 PV33P_ADE41 33 KD PHOSPHOPROTEIN HUMAN ADENOVIRUS TYPE 41 15-42 PV362_ASFB7 K′362 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 75-102 PV363_ASFB7 D′363 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 3-30 172-199 PV3A_BMV 3A PROTEIN BROME MOSAIC VIRUS 11-38 PV3A_CMVFN 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 222-252 PV3A_CMVM 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN M) 217-252 PV3A_CMVO 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN O) 222-253 PV3A_CMVY 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Y) 222-253 PV3A_IBVB 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 25-57 BEAUDETTE) PV3A_IBVU5 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN UK/183/66) 29-56 PV3B_IBVB 3B PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6-33 BEAUDETTE) PV50K_BYDVP 50 KD PROTEIN BARLEY YELLOW DWARF VIRUS (ISOLATE PAV) 119-146 PV51K_BWYVF 51 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 113-147 424-451 PV51K_BWYVG 51 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE GB1) 113-147 424-451 PV56K_PLRV1 56 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) 124-151 431-472 PV56K_PLAVW 56 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 124-151 438-477 PV58K_BSMV 54 KD PROTEIN BARLEY STRIPE MOSAIC VIRUS 128-155 PV70K_PLAVI 69.7 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) 110-140 PV70K_PLRVW 69.7 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 110-140 PV90K_AMYLE 90 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN) 107-134 PVA06_VACCC PROTEIN A6 VACCINIA VIRUS (STRAIN COPENHAGEN) 157-216 250-277 283-310 314-355 PVA06_VACCV PROTEIN A6 VACCINIA VIRUS (STRAIN WR) 156-213 249-276 282-309 313-354 PVA06_VARV PROTEIN A6 VARIOLA VIRUS 157-216 250-277 283-310 314-355 PVA08_VACCC PROTEIN A8 VACCINIA VIRUS (STRAIN COPENHAGEN) 176-206 PVA08_VARV PROTEIN A8 VARIOLA VIRUS 176-206 PVA09_VARV PROTEIN A9 VARIOLA VIRUS 60-95 PVA11_VACCC PROTEIN A11 VACCINIA VIRUS (STRAIN COPENHAGEN) 219-283 PVA11_VARV PROTEIN A11 VARIOLA VIRUS 220-284 PVA18_VARV 56 KD ABORTIVE LATE PROTEIN VARIOLA VIRUS 440-467 PVA20_VACCC PROTEIN A20 VACCINIA VIRUS (STRAIN COPENHAGEN) 8-67 330-337 PVA20_VARV PROTEIN A20 VARIOLA VIRUS 8-67 330-357 PVA22_VACCC PROTEIN A22 VACCINIA VIRUS (STRAIN COPENHAGEN) 45-72 PVA22_VARV PROTEIN A22 VARIOLA VIRUS 56-83 PVA23_VACCC PROTEIN A23 VACCINIA VIRUS (STRAIN COPENHAGEN) 95-144 PVA23_VARV PROTEIN A23 VARIOLA VIRUS 95-144 PVA28_VACCV PROTEIN A28 VACCINIA VIRUS (STRAIN WR) 22-49 PVA28_VARV PROTEIN A28 VARIOLA VIRUS 22-49 PVA30_VACCV PROTEIN A30 VACCINIA VIRUS (STRAIN WR) 12-55 PVA31_VACCC PROTEIN A31 VACCINIA VIRUS (STRAIN COPENHAGEN) 88-115 PVA31_VARV PROTEIN A31 VARIOLA VIRUS 88-122 PVA34_VACCC PROTEIN A34 VACCINIA VIRUS (STRAIN COPENHAGEN) 87-114 PVA34_VACCV PROTEIN A34 VACCINIA VIRUS (STRAIN WR) 87-114 PVA34_VARV PROTEIN A34 VARIOLA VIRUS 87-114 PVA36_VACCV PROTEIN A36 PRECURSOR VACCINIA VIRUS (STRAIN WR) 120-155 PVA36_VARV PROTEIN A36 PRECURSOR VARIOLA VIRUS 127-154 PVA38_VACCC PROTEIN A38 VACCINIA VIRUS (STRAIN COPENHAGEN) 44-81 PVA38_VACCV PROTEIN A38 VACCINIA VIRUS (STRAIN WR) 44-81 PVA38_VARV PROTEIN A38 VARIOLA VIRUS 44-91 PVA39_VACCC PROTEIN A39 VACCINIA VIRUS (STRAIN COPENHAGEN) 37-71 155-182 PVA39_VACCV PROTEIN A39 VACCINIA VIRUS (STRAIN WR) 75-109 193-220 PVA43_VACCC PROTEIN A43 VACCINIA VIRUS (STRAIN COPENHAGEN) 145-172 PVA43_VACCV PROTEIN A43 VACCINIA VIRUS (STRAIN WR) 145-172 PVA43_VARV PROTEIN A43 VARIOLA VIRUS 146-173 PVA47_VACCC PROTEIN A47 VACCINIA VIRUS (STRAIN COPENHAGEN) 143-184 PVA47_VACCV PROTEIN A47 VACCINIA VIRUS (STRAIN WR) 143-184 PVA47_VARV PROTEIN A47 VARIOLA VIRUS 142-184 PVA49_VACCC PROTEIN A49 VACCINIA VIRUS (STRAIN COPENHAGEN) 61-91 PVA49_VACCV PROTEIN A49 VACCINIA VIRUS (STRAIN WR) 61-91 PVA49_VARV PROTEIN A49 VARIOLA VIRUS 61-91 PVA55_VACCC PROTEIN A55 VACCINIA VIRUS (STRAIN COPENHAGEN) 55-82 126-156 435-462 PVA55_VACCV PROTEIN A55 VACCINIA VIRUS (STRAIN WR) 55-82 126-156 435-462 PVAL1_BCTV AL1 PROTEIN BEET CURLY TOP VIRUS 22-49 PVAL3_CLVK AL3 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 79-106 PVAL3_CLVN AL3 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 79-106 PVAL3_SLCV AL3 PROTEIN SQUASH LEAF CURL VIRUS 101-128 PVAL3_TYLCV AL3 PROTEIN TOMATO YELLOW LEAF CURL VIRUS 79-129 PVAT_CAMVC APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 22-70 93-129 PVAT_CAMVD APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 22-70 PVAT_CAMVE APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 22-70 93-129 PVAT_CAMVN APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 22-70 93-129 PVAT_CAMVP APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) 22-70 93-129 PVAT_CAMVS APHID TRANSMISSION PROTEIN 22-70 93-130 PVAT_CAMVW APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN W260) 36-70 PVAT_CERV APHID TRANSMISSION PROTEIN CARNATION ETCHED RING VIRUS 102-138 PVAT_FMVD APHID TRANSMISSION PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 52-82 103-130 PVB03_VACCV PROTEIN B3 VACCINIA VIRUS (STRAIN WR) 108-135 PVB04_VACCC PROTEIN B4 VACCINIA VIRUS (STRAIN COPENHAGEN) 92-123 182-211 216-313 324-361 PVB04_VACCV PROTEIN B4 VACCINIA VIRUS (STRAIN WR) 92-123 182-211 286-313 324-361 PVB04_VARV PROTEIN B4 VARIOLA VIRUS 89-127 182-211 286-313 324-361 PVB05_VACC0 PLAQUE-SIZE/HOST RANGE PRO PREC VACCINIA VIRUS (STRAIN LC16MO) 254-284 PVB05_VACCC PLAQUE-SIZE/HOST RANGE PRO PREC VACCINIA VIRUS (STRAIN COPENHAGEN) 254-284 PVB05_VACCL PLAQUE-SIZE/HOST RANGE PRO PREC VACCINIA VIRUS (STRAIN LISTER) 254-284 PVB05_VACCV PLAQUE-SIZE/HOST RANGE PRO PREC VACCINIA VIRUS (STRAIN WR) 254-284 PVB07_VACCV PROTEIN B7 PRECURSOR VACCINIA VIRUS (STRAIN WR) 28-62 PVB08_VACCC PROTEIN B8 PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 26-53 PVB08_VACCV PROTEIN B8 PRECURSOR VACCINIA VIRUS (STRAIN WR) 26-53 PVB11_VACCC PROTEIN B11 VACCINIA VIRUS (STRAIN COPENHAGEN) 21-54 PVB11_VACCV PROTEIN B11 VACCINIA VIRUS (STRAIN WR) 5-38 PVB16_COWPX IL-1 BIND PRO PRECURSOR COWPOX VIRUS 113-140 PVB17_VACCC PROTEIN B17 VACCINIA VIRUS (STRAIN COPENHAGEN) 258-285 PVB17_VACCV PROTEIN B17 VACCINIA VIRUS (STRAIN WR) 258-285 PVB18_VACCC PROTEIN B18 VACCINIA VIRUS (STRAIN COPENHAGEN) 337-375 PVB18_VACCV PROTEIN B18 VACCINIA VIRUS (STRAIN WR) 337-375 PVB18_VARV PROTEIN B18 VARIOLA VIRUS 337-378 PVB19_VACCC SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 182-212 PVB19_VACCD SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN DAIREN I) 180-210 PVB19_VACCV SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN WR) 180-210 PVB19_VARV SURFACE ANTIGEN S PRECURSOR VARIOLA VIRUS 180-210 PVB20_VACCC PROTEIN B20 VACCINIA VIRUS (STRAIN COPENHAGEN) 48-82 PVB21_VACCV PROTEIN B21 VACCINIA VIRUS (STRAIN WR) 64-91 PVBL1_BGMV BL1 PROTEIN BEAN GOLDEN MOSAIC VIRUS 120-147 248-275 PYBL1_CLVK BL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 118-145 PVBL1_CLVN BL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 118-145 PVBL1_PYMVV BL1 PROTEIN POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA) 120-147 PVC02_VACCC PROTEIN C2 VACCINIA VIRUS (STRAIN COPENHAGEN) 403-432 PVC02_VACCV PROTEIN C2 VACCINIA VIRUS (STRAIN WR) 41-71 405-432 PVC04_SFVKA PROTEIN C4 SHOPE FIBROMA VIRUS (STRAIN KASZA) 209-236 484-515 PVC04_VACCC PROTEIN C4 VACCINIA VIRUS (STRAIN COPENHAGEN) 12-46 PVC04_VACCV PROTEIN C4 VACCINIA VIRUS (STRAIN WR) 12-46 PVC04_VARV PROTEIN C4 VARIOLA VIRUS 12-46 PVC05_SFVKA HYPOTHETICAL PROTEIN C5 SHOPE FIBROMA VIRUS (STRAIN KASZA) 85-125 152-179 PVC05_VACCC PROTEIN C5 VACCINIA VIRUS (STRAIN COPENHAGEN) 38-65 PVC05_VACCV PROTEIN C5 VACCINIA VIRUS (STRAIN WR) 38-65 PVC05_VARV PROTEIN C5 VARIOLA VIRUS 36-66 PVC07_VACCV PROTEIN C7 VACCINIA VIRUS (STRAIN WR) 80-111 PVC07_VARV PROTEIN C7 VARIOLA VIRUS 80-111 PVC09_VACCC PROTEIN C9 VACCINIA VIRUS (STRAIN COPENHAGEN) 42-69 82-116 178-205 252-279 289-325 575-605 PVC09_VACCV PROTEIN C9 VACCINIA VIRUS (STRAIN WR) 42-69 82-116 178-205 252-279 289-323 575-605 PVC10_VACCC PROTEIN C10 VACCINIA VIRUS (STRAIN COPENHAGEN) 136-180 PVC10_VACCV PROTEIN C10 VACCINIA VIRUS (STRAIN WR) 136-163 PVC10_VARV PROTEIN C10 VARIOLA VIRUS 136-163 PVC13_SFVKA PROTEIN C13 SHOPE FIBROMA VIRUS (STRAIN KASZA) 3-30 39-66 137-182 206-240 PVC17_VACCC PROTEIN C17/B23 VACCINIA VIRUS (STRAIN COPENHAGEN) 111-152 PVC18_VACCC PROTEIN C18/B24 VACCINIA VIRUS (STRAIN COPENHAGEN) 40-74 PVC19_SPYKA PROTEIN C19 SHOPE FIBROMA VIRUS (STRAIN KASZA) 56-97 PVC20_VACCC PROTEIN C20/B26 VACCINIA VIRUS (STRAIN COPENHAGEN) 72-99 PVC22_VARV PROTEIN C22/B28 HOMOLOG VARIOLA VIRUS 299-326 PVCAP_EBV MAJOR CAPSID PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 847-874 PVCAP_HSV6U MAJOR CAPSID PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 136-170 355-382 PVCAP_HSVSA MAJOR CAPSID PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 769-799 PVCG3_NFVAC DNA-BINDING PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 133-165 199-248 VIRUS PVCOM_ADE02 MINOR CORE PROTEIN HUMAN ADENOVIRUS TYPE 2 88-115 PVCOM_ADE05 MINOR CORE PROTEIN HUMAN ADENOVIRUS TYPE 5 87-114 PYD05_FOWP1 92.6 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 6-33 184-211 321-348 PVD05_VACCC PROTEIN D5 VACCINIA VIRUS (STRAIN COPENHAGEN) 240-267 333-360 PVD05_VACCV PROTEIN D5 VACCINIA VIRUS (STRAIN WR) 240-267 PVD05_VARV PROTEIN D5 VARIOLA VIRUS 240-267 PVD09_VACCC PROTEIN D9 VACCINIA VIRUS (STRAIN COPENHAGEN) 123-150 PVD09_VACCV PROTEIN D9 VACCINIA VIRUS (STRAIN WR) 123-150 PVD09_VARV PROTEIN D9 VARIOLA VIRUS 123-160 PVD10_SFVKA PROTEIN D10 SHOPE FIBROMA VIRUS (STRAIN KASZA) 18-52 PVDBP_CERV DNA-BINDING PROTEIN CARNATION ETCHED RING VIRUS 2-35 PVE02_VARV PROTEIN E2 VARIOLA VIRUS 282-322 PVE06_VACCC PROTEIN E6 VACCINIA VIRUS (STRAIN COPENHAGEN) 89-116 437-464 PVE06_VACCV PROTEIN E6 VACCINIA VIRUS (STRAIN WR) 89-116 437-464 PVE06_VARV PROTEIN E6 VARIOLA VIRUS 89-116 367-394 437-464 PVE1_HPV18 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 60-87 PVE1_HPV2A E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 2A 21-48 PVE1_HPV33 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 180-207 PVE1_HPV39 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 103-130 PVE1_HPV41 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 55-89 PVE1_HPV42 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 25-59 PVE1_HPV47 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 146-173 PVE1_HPV57 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 57 21-48 PVE26_NPVAC EARLY 25.9 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 72-113 VIRUS PVE2_CRPVK PROBABLE E2 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN 5-34 KANSAS) PVE2_HPV05 PROBABLE E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5 17-51 PVE2_HPV13 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 13 157-184 334-361 PVE2_HPV16 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 16 61-105 312-342 PVE2_HPV15 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 18 313-340 PVE2_HPV1A E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 1A 159-186 PVE2_HPV2A E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 2A 159-193 PVE2_HPV33 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 33 304-331 PVE2_HPV35 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 158-192 327-354 PVE2_HPV39 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 7-34 323-357 PVE2_HPV47 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 47 17-52 143-175 276-303 PVE2_HPV51 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 51 137-184 PVE2_HPV57 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 57 166-193 PVE2_HPV58 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 2-36 309-336 PVE2_HPV5B PROBABLE E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 17-51 PVE2_PAPVE PROBABLE E2 PROTEIN EUROPEAN ELK PAPILLOMA VIRUS 120-150 PVE2_PCPV1 E2 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 267-294 327-362 PVE4_HPV05 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5 202-229 PVE4_HPV11 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 81-108 PVE4_HPV16 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 16 66-93 PVE4_HPV18 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 59-86 PVE4_HPV31 PROBABLE EA PROTEIN HUMAN PAPILLOMA VIRUS TYPE 31 75-102 PVE4_HPV41 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 63-97 PVE4_HPV5B PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 202-229 PVE5A_HPV11 PROBABLE E5A PROTEIN HUMAN PAPILLOMA VIRUS TYPE 11 30-60 PVE5A_HPV6B PROBABLE E5A PROTEIN HUMAN PAPILLOMA VIRUS TYPE 6B 30-60 PVE5A_HPV6C PROBABLE E5A PROTEIN HUMAN PAPILLOMA VIRUS TYPE 6C 30-60 PVE5_HPV35 PROBABLE E5 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 35 27-54 PVE5_HPV5B PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 11-41 PVE5_PCPV1 PROBABLE E5 PROTEIN PYGMY CHIMPANZEE PAPILLOMA VIRUS TYPE 1 35-62 PVE6_HPV18 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 75-102 PVE6_HPV31 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 69-96 PVE6_HPV39 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 71-102 PVE6_HPV41 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 41 119-146 PVE6_HPV45 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 45 75-102 PVE6_HPV51 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 51 72-99 PVE6_HPVME E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE ME180 71-102 PVE94_NPVAC EARLY 94 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 620-647 VIRUS PVEF_GVTN VIRAL ENHANCING FACTOR TRICHOPLUSIA N1 GRANULOSIS VIRUS 411-438 PVENV_DHV11 ENVELOPE GLYCOPROTEIN PRECURSOR DHORI VIRUS (STRAIN INDIAN/1313/61) 318-366 PVENV_EAV PROBABLE ENVELOPE PROTEIN EQUINE ARTERITIS VIRUS 120-147 PVENV_THOGV ENVELOPE GLYCOPROTEIN PRECURSOR THOGOTO VIRUS 313-347 PVF03_VACCC PROTEIN F3 VACCINIA VIRUS (STRAIN COPENHAGEN) 71-110 185-212 PYF03_VACCV PROTEIN F3 VACCINIA VIRUS (STRAIN WR) 71-110 185-212 PVF05_VACCP 36 KD MAJOR MEMBRANE PRO PRECURSO VACCINIA VIRUS (STRAIN L-IVP) 33-60 PVF05_VACCV 36 KD MAJOR MEMBRANE PRO PRECURSO VACCINIA VIRUS (STRAIN WR) 33-60 PVF06_VARV PROTEIN F6 VARIOLA VIRUS 10-44 PVF11_VACCC PROTEIN F11 VACCINIA VIRUS (STRAIN COPENHAGEN) 274-321 PVF1_VACCP PROTEIN F11 VACCINIA VIRUS (STRAIN L-IVP) 270-317 PVF11_VARV PROTEIN F11 VARIOLA VIRUS 274-321 PVF12_VACCC PROTEIN F12 VACCINIA VIRUS (STRAIN COPENHAGEN) 10-37 113-140 554-581 PVFI2_VACCP PROTEIN FI2 VACCINIA VIRUS (STRAIN L-IVP) 10-37 113-140 554-581 PVF12_VARV PROTEOM F12 VARIOLA VIRUS 20-37 202-236 554-582 PVF16_VACCC PROTEIN F16 VACCINIA VIRUS (STRAIN COPENHAGEN) 35-62 152-179 PVF16_VACCP PROTEIN F16 VACCINIA VIRUS (STRAIN L-IVP) 35-62 152-179 PVF16_VARV PROTEIN F16 VARIOLA VIRUS 35-62 149-179 PVFP4_FOWPV PROTEIN FP4 FOWLPOX VIRUS 146-173 PVFUS_ORFNZ 10 KD FUSION PROTEIN ORF VIRUS (STRAIN NZ2) 59-86 PVFUS_VACCC 14 KD FUSION PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 37-64 PVFUS_VACCY KD FUSION PROTEIN VACCINIA VIRUS (STRAIN WR) 37-64 PVG01_VACCC PROTEIN G1 VACCINIA VIRUS (STRAIN COPENHAGEN) 225-252 301-335 PYG01_VACCV PROTEIN G1 VACCINIA VIRUS (STRAIN WR) 164-191 240-274 PYG01_VARV PROTEIN G1 VARIOLA VIRUS 225-232 301-335 PVG01_VACCV ISATIN-B-TSC DEP PROTEIN VACCINIA VIRUS (STRAIN WR) 96-123 PVG02_VARV ISATIN-B-TSC DEP PROTEIN VARIOLA VIRUS 96-123 PVG03_HSVED GENE 3 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 146-176 PVG01_HSVEK GENE 3 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 146-176 PVG05_VACCC PROTEIN G5 VACCINIA VIRUS (STRAIN COPENHAGEN) 48-75 131-161 225-289 355-389 PVG05_VARV PROTEIN G5 VARIOLA VIRUS 48-75 124-161 255-289 355-389 PVG07_HSVI1 HYPOTH GENE 7 MEMB PRO ICTALURID HERPESVIRUS 1 71-98 PVG09_VACCC PROTEIN F1 VACCINIA VIRUS (STRAIN COPENHAGEN) 308-338 PVG09_VACCV PROTEIN F1 VACCINIA VIRUS (STRAIN WR) 271-301 PVG09_VARV PROTEIN F1 VARIOLA VIRUS 308-338 PVG12_SPVIR GENE 12 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 11-45 PVG17_HSVI1 HYPOTHETICAL GENE 17 PROTEIN ICTALURID HERPESVIRUS 1 177-204 PVG18_HSVI1 HYPOTHETICAL GENE 18 PROTEIN ICTALURID HERPESVIRUS 1 174-208 PVG1_SPVIR CAPSID PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 260-287 PGV1_SPV4 CAPSID PROTEIN SPIROPLASMA VIRUS 4 287-314 383-410 PVG22_HSVI1 HYPOTHETICAL GENE 22 PROTEIN ICTALURID HERPESVIRUS 1 373-400 581-622 668-705 766-824 PVG24_HSVI1 HYPOTHETICAL GENE 24 PROTEIN ICTALURID HERPESVIRUS 1 31-58 PVG28_HSVI1 HYPOTHETICAL GENE 28 PROTEIN ICTALURID HERPESVIRUS 1 253-290 497-528 PVG2R_AMEPV HYPOTHETICAL G2R PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS 33-64 91-118 PVG2_SPV1R GENE 2 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 285-326 PVG2_SPV4 GENE 2 PROTEIN SPIROPLASMA VIRUS 4 146-173 175-205 262-310 PVG34_HSVI1 HYPOTHETICAL GENE 34 PROTEIN ICTALURID HERPESVIRUS 1 95-122 PVG37_HSVI1 HYPOTHETICAL GENE 37 PROTEIN ICTALURID HERPESVIRUS 1 442-469 PVG39_HSVI1 HYPOTHETICAL GENE 39 PROTEIN ICTALURID HERPESVIRUS 1 651-678 1088- 1115 PVG3L_AMEPV HYPOTHETICAL GJL PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS 2-29 PVG3_SPV1R GENE 3 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 15-49 PVG1_SPV4 GENE 3 PROTEIN SPIROPLASMA VIRUS 4 18-52 87-148 PVG45_HSVSA HYPOTHETICAL GENE 45 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 138-165 PVG46_HSVI1 PROBABLE MAJOR GLYCOPROTEIN ICTALURID HERPESVIRUS 1 142-169 346-373 897-924 973- 1007 PVG48_HSVSA HYPOTHETICAL GENE 48 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 360-394 PVG4R_AMEPV G4R PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS 4-31 PVG4_SPV1R GENE 4 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 116-146 PVG51_HSVI1 HYPOTH GENE 51 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 34-61 87-114 PVG52_HSVSA HYPOTHETICAL GENE 52 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 47-74 PVG56_HSVI1 HYPOTHETICAL GENE 56 PROTEIN ICTALURID HERPESVIRUS 1 582-609 PVG5_SPV1R GENE 5 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 65-92 PVG5_SPV4 GENE 5 PROTEIN SPIROPLASMA VIRUS 4 56-83 PVG63_HSVI1 HYPOTHETICAL GENE 63 PROTEIN ICTALURID HERPESVIRUS 1 550-584 PVG64_HSVI1 HYPOTHETICAL GENE 64 PROTEIN ICTALURID HERPESVIRUS 1 477-504 PVG65_HSVI1 HYPOTHETICAL GENE 65 PROTEIN ICTALURID HERPESVIRUS 1 1213- 1254 PVG66_HSVI1 HYPOTHETICAL GENE 66 PROTEIN ICTALURID HERPESVIRUS 1 362-406 PVG67_HSVI1 HYPOTHETICAL GENE 67 PROTEIN ICTALURID HERPESVIRUS 1 1342- 1369 PVG68_HSVI1 HYPOTHETICAL GENE 68 PROTEIN ICTALURID HERPESVIRUS 1 261-288 PVG72_HSVI1 HYPOTHETICAL GENE 72 PROTEIN ICTALURID HERPESVIRUS 1 447-481 PVG75_HSVI1 HYPOTHETICAL GENE 75 PROTEIN ICTALURID HERPESVIRUS 1 388-472 PVG76_HSVI1 HYPOTHETICAL GENE 76 PROTEIN ICTALURID HERPESVIRUS 1 200-227 PVG7_SPV4 GENE 7 PROTEIN SPIROPLASMA VIRUS 4 14-44 PVGF1_IBVB F1 PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS 1230- 2408- 1260 2435 PVGL2_CVBF E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN F15) 399-426 642-676 1022- 1278- 1084 1305 PVGL2_CVBL9 E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN L9) 399-426 1022- 1278- 1084 1305 PVGL2_CVBLY E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN LY-138) 399-426 642-676 1022- 1278- 1084 1305 PVGL2_CVBM E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN MEBUS) 399-426 642-676 1022- 1278- 1084 1305 PVGL2_CVBQ E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN QUEBEC) 399-426 642-676 1022- 1278- 1084 1305 PVGL2_CVBV E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN VACCINE) 399-426 642-676 1022- 1278- 1084 1305 PVGL2_CVH22 E2 GLYCOPROTEIN PRECURSOR HUMAN CORONAVIRUS (STRAIN 229E) 770-797 809-875 1056- 1112 PVGL2_CVM4 E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN WILD TYPE 4) 643-684 1030- 1092 PVGL2_CVMA5 E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN A59) 36-63 591-632 978- 1040 PVGL2_CVMJC E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN JHMV/VARIANT 643-684 1030- CL-2) 1092 PVGL2_CVMJH E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN JHM) 502-543 889-951 PVGL2_CVPFS E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 69-110 692-733 1072- 1353- CORONAVIRUS (STRAIN FS772 1145 1389 PVGL2_CVPM1 E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 69-110 692-733 1069- 1353- CORONAVIRUS (STRAIN MILLE 1145 1389 PVGL2_CVPPR E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 73-107 690-731 1067- 1351- CORONAVIRUS (STRAIN PUR46 1143 1387 PVGL2_CVPPU E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 69-107 690-731 1067- 1351- CORONAVIRUS (STRAIN PURD 1143 1387 PVGL2_CVPR8 E2 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS (STRAIN 468-509 1129- 86/137004/BRITISH ISOLAT 1165 PVGL2_CVPRM E2 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 468-509 845-921 1129- 1165 PVGL2_CVPRT E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 69-107 690-731 1067- 1353- CORONAVIRUS (STRAIN NEB72 1143 1387 PVGL2_EBV PROBABLE MEMBRANE GLYCOPROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 68-102 PVGL2_FIPV E2 GLYCOPROTEIN PRECURSOR FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 180-233 454-481 709-736 1072- 1356- 1148 1392 PVGL2_IBV6 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82) 809-816 876-903 1057- 1091 PVGL2_IBV8 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 808-835 875-902 1056- BEAUDETTE) 1090 PVGL2_IBVD2 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D274) 809-836 876-903 1057- 1091 PVGL2_IBVK E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 808-835 875-902 1056- 1090 PVGL2_IBVM E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41) 808-835 875-902 1056- 1090 PVGLB_EBV GLYCOPROTEIN GP110 PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8) 95-122 631-658 PVGLB_HCMVA GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 25-88 397-424 440-467 851-878 PVGLB_HCMVT GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 50-88 397-424 435-462 852-879 PVGLB_HSVB1 GLYCOPROTEIN 1 PRECURSOR BOVINE HERPESVIRUS TYPE 1 427-454 PVGLB_HSVB2 GLYCOPROTEIN B-1 PRECURSOR BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) 447-474 PVGLB_HSVE1 GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (ISOLATE HSV25A) 443-470 934-961 PVGLB_HSVE4 GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 4 486-513 616-643 PVGLB_HSVEA GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) 443-470 934-961 PVGLB_HSVEB GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 443-470 934-961 PVGLB_HSVEL GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D) 443-470 933-960 PVGLB_HSVMD GLYCOPROTEIN B PRECURSOR MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B) 93-120 352-379 PVGLB_MCMVS GLYCOPROTEIN B PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 381-408 441-475 PVGLC_HSV11 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 469-510 PVGLC_HSV1K GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 469-510 PVGLC_HSVEB GLYCOPROTEIN C PRECURSOR EQUINE HERPESVIRUS TYPE 1 124-151 PVGLC_VZVD GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 295-322 PVGLC_VZVS GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN SCOTT) 295-322 PVGLE_HSV2 GLYCOPROTEIN E PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 111-148 PVGLF_BRSVA FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 38-65 154-202 216-243 442-469 486-531 PVGLF_BRSVC FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN 38-65 154-202 216-243 444-471 488-533 COPENHAGEN) PVGLF_BRSVR FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94) 38-65 154-202 216-243 444-471 488-533 PVGLF_CDVO FUSION GLYCOPROTEIN PRECURSOR CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 252-293 340-367 PVGLF_HRSV1 FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 38-65 154-203 442-471 488-515 B/STRAIN 18537) PVGLF_HRSVA FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 38-65 154-202 213-243 488-518 PVGLF_HRSVL FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 38-65 154-202 216-243 444-471 488-515 A/STRAIN LONG) PVGLF_HRSVR FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSS-2) 38-65 154-202 213-243 442-471 488-518 PVGLF_MEASE FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAINS EDMONSTON AND HALLE) 228-262 PVGLF_MEASI FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN IP-3-CA) 231-265 PVGLF_MEASY FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN YAMAGATA-1) 228-262 PVGLF_MUMP1 FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN SBL-1) 20-54 447-486 PVGLF_MUMPM FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 20-54 447-486 PVGLF_MUMPR FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN RW) 20-54 447-486 PVGLF_MUMPS FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN SBL) 151-178 426-511 PVGLF_NDVA FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 151-178 426-512 VICTORIA/32) PVGLF_NDVB FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 151-178 426-512 PVGLF_NDVH3 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN HERR/33) 151-178 426-512 PVGLF_NDVH4 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47) 151-178 426-512 PVGLF_NDVI FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45) 151-178 426-512 PVGLF_NDVL FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN LAS/46) 151-178 192-219 426-512 PVGLF_NDVM FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51) 151-178 437-512 PVGLF_NDVQ FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66) 151-178 433-512 PVGLF_NDVT FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN TEXAS) 151-178 426-512 PVGLF_NDVTG FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48) 151-178 426-512 PVGLF_NDVU FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67) 151-178 426-512 PVGLF_PHODV FUSION GLYCOPROTEIN PRECURSOR PHOCINE DISTEMPER VIRUS 36-63 221-262 309-336 PVGLF_PI1HC FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 147-174 210-266 PVGLF_PI2H FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS 90-117 141-175 238-266 483-528 PVGLF_PI2HG FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (STRAIN GREER) 90-117 141-175 238-266 483-528 PVGLF_PI2HT FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 90-117 141-175 238-266 483-528 PVGLF_PI3B FUSION GLYCOPROTEIN PRECURSOR BOVINE PARAINFLUENZA 3 VIRUS 115-182 207-241 459-497 PVGLF_PI3H4 FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIII 47885) 115-182 207-241 457-497 PVGLF_RINDK FUSION GLYCOPROTEIN PRECURSOR RINDERPEST VIRUS (STRAIN KABETE O) 224-265 458-485 PVGLF_RINDL FUSION GLYCOPROTEIN PRECURSOR RINDERPEST VIRUS (STRAIN L) 224-265 458-506 PVGLF_SEND5 FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 122-149 211-245 480-507 PVGLF_SENDF FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN FUSHIMI) 122-149 211-245 480-507 PVGLF_SENDH FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN HARRIS) 122-149 211-245 480-507 PVGLF_SENDJ FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN HVJ) 122-149 211-245 480-507 PVGLF_SENDZ FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN Z) 122-149 211-245 480-507 PVGLF_SV41 FUSION GLYCOPROTEIN PRECURSOR SIMIAN VIRUS 41 144-185 241-269 459-596 PVGLF_SV5 FUSION GLYCOPROTEIN PRECURSOR SIMIAN VIRUS 5 (STRAIN W3) 137-171 417-444 PVGLF_TRTV FUSION GLYCOPROTEIN PRECURSOR TURKEY RHINOTRACHEITIS VIRUS 122-161 193-200 457-484 PVGLG_BEFV SPIKE GLYCOPROTEIN PRECURSOR BOVINE EPHEMERAL FEVER VIRUS 523-557 PVGLG_BRSVC MAJOR SURFACE GLYCOPROTEIN G BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN 92-123 COPENHAGEN) PVGLG_HRSV1 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 63-93 B/STRAIN 18537) PVGLG_HRSV4 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN 66-107 RSB5857) PVGLG_HRSV5 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN 243-273 RSB6190) PVGLG_HRSV8 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 66-93 B/STRAIN 8/60) PVGLG_HSVE4 GLYCOPROTEIN G PRECURSOR EQUINE HERPESVIRUS TYPE 4 271-298 PVGLG_HSVEB GLYCOPROTEIN G PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 383-410 PVGLG_RABVT SPIKE GLYCOPROTEIN PRECURSOR RABIES VIRUS (STRAIN STREET) 489-519 PVGLG_VSVIG SPIKE GLYCOPROTEIN PRECURSOR VESICULAR STOMATITIS VIRUS (SEROTYPE 472-499 INDIANA/STRAIN GLASGOW) PVGLH_EBV GLYCOPROTEIN GP85 PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8) 549-576 619-648 PVGLH_HCMVA GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 107-136 270-297 PVGLH_HCMVT GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 106-135 PVGLH_HSV6G GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 62-89 360-403 PVGLH_HSVSA GLYCOPROTEIN H PRECURSOR HERPESVIRUS SAIMIRI (STRAIN 11) 388-415 PVGLI_HCMVA IE GLYCOPROTEIN PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 47-111 PVGLM_BUNGE M POLYPROTEIN PRECURSOR BUNYAVIRUS GERMISTON 512-446 914-941 1128- 1255 PVGLM_BUNL7 M POLYPROTEIN PRECURSOR BUNYAVIRUS LA CROSSE (ISOLATE L74) 913-950 PVGLM_BUNYW M POLYPROTEIN PRECURSOR BUNYAMWERA VIRUS 340-374 504-535 682-709 PVGLM_DUGBV M POLYPROTEIN PRECURSOR DUGBE VIRUS 945-972 PVGLM_HANTB M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN B-1) 73-100 693-720 PVGLM_HANTH M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN HOJO) 75-102 PVGLM_HANTL M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN LEE) 75-102 PVGLM_HANTV M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN 76-118) 75-102 PVGLM_INSV M POLYPROTEIN PRECURSOR IMPATIENS NECROTIC SPOT VIRUS 628-655 1069- 1101 PVGLM_PHV M POLYPROTEIN PRECURSOR PROSPECT HILL VIRUS 69-96 PVGLM_PUUMH M POLYPROTEIN PRECURSOR PUUMALA VIRUS (STRAIN HALLNAS B1) 72-110 PVGLM_PUUMS M POLYPROTEIN PRECURSOR PUUMALA VIRUS (STRAIN SOTKAMO) 72-110 PVGLM_SEOU8 M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN 80-39) 513-540 693-720 PVGLM_SEOUR M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN R22) 73-100 513-540 694-721 PVGLM_SEOUS M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN SR-11) 73-100 513-540 694-721 PVGLN_BEFV NONSTRUCT GLYCOPRO GNS PRECURSOR BOVINE EPHEMERAL FEVER VIRUS 523-564 PVGLP_BEV PEPLOMER GLYCOPROTEIN PRECURSOR BERNE VIRUS 48-82 1145- 1184- 1505- 1179 1211 1532 PVGLY_JUNIN GLYCOPROTEIN POLYPROTEIN PRECURSO JUNIN ARENAVIRUS 14-41 PVGLY_LASSG GLYCOPROTEIN POLYPROTEIN PRECURSO LASSA VIRUS (STRAIN GA391) 86-113 PVGLY_MOPEI GLYCOPROTEIN POLYPROTEIN PRECURSO MOPEIA VIRUS 86-113 316-346 PVGLY_PIARV GLYCOPROTEIN POLYPROTEIN PRECURSO PICHINDE ARENAVIRUS 334-375 PVGLY_TACV GLYCOPROTEIN POLYPROTEIN PRECURSO TACARIBE VIRUS 109-136 315-350 PVGLY_TACV5 GLYCOPROTEIN POLYPROTEIN PRECURSO TACARIBE VIRUS (STRAIN V5) 303-338 PVGLY_TACV7 GLYCOPROTEIN POLYPROTEIN PRECURSO TACARIBE VIRUS (STRAIN V7) 302-337 PVGLY_TACVT GLYCOPROTEIN POLYPROTEIN PRECURSO TACARIBE VIRUS (STRAIN TRVL 11598) 303-338 PVGNM_CPSMV GENOME POLYPROTEIN M COWPEA SEVERE MOSAIC VIRUS (STRAIN DG) 192-221 PVGP8_EBV PROBABLE MEMBRANE ANTIGEN GP85 EPSTEIN-BARR VIRUS (STRAIN B95-8) 104-149 PVGP_EBOV STRUCTURAL GLYCOPROTEIN PRECURSO EBOLA VIRUS 280-314 PVGP_MABVM STRUCTURAL GLYCOPROTEIN PRECURSO MARBURG VIRUS (STRAIN MUSOKE) 559-589 619-646 PVGP_MABVP STRUCTURAL GLYCOPROTEIN PRECURSO MARBURG VIRUS (STRAIN POPP) 559-589 619-646 PVH05_VACCC PROTEIN H5 VACCINIA VIRUS (STRAIN COPENHAGEN) 132-166 PVH05_VACCV PROTEIN H5 VACCINIA VIRUS (STRAIN WR) 132-166 PVH05_VARV PROTEIN H5 VARIOLA VIRUS 64-91 150-184 PVHEL_LSV PROBABLE HELICASE LILY SYMPTOMLESS VIRUS 130-160 PVHRP_VACCC HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 241-275 PVHRP_VACCV HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN WR) 241-275 PVI01_VACCC PROTEIN 11 VACCINIA VIRUS (STRAIN COPENHAGEN) 90-117 153-180 VI01_VARV PROTEIN 11 VARIOLA VIRUS 90-117 153-180 VI03_VACCC PROTEIN 13 VACCIN1A VIRUS (STRAIN COPENHAGEN) 160-190 VI03_VACCV PROTEIN 13 VACCINIA VIRUS (STRAIN WR) 160-190 VI03_VARV PROTEIN 13 VARIOLA VIRUS 160-190 VI08_VACCC PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN COPENHAGEN) 290-317 548-575 593-632 VI08_VACCV PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN WR) 290-317 548-575 593-632 VI08_VARV PUTATIVE RNA HELICASE 18 VARIOLA VIRUS 290-317 548-575 593-632 VIE1_MCMVS IMMEDIATE-EARLY PROTEIN 1 MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 261-288 VIE2_NPVOP IMMEDIATE-EARLY PROTEIN IE-2 ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 355-385 VIRUS VIEN_NPVAC IE-REG PROTEIN IE-N AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 217-325 343-400 VIRUS VIF_HVIRH VIRION INFECTIVITY FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT 62-89 ISOLATE) VIF_SIVAI VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE 2-36 GRI-1) VIMP_HSVEB PROB INTEGRAL MEMBRANE PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 147-174 VIMP_HSVSA INTEGRAL MEMBRANE PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 80-107 VINT_SSV1 PROBABLE INTEGRASE SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 73-100 VJ01_VACCC PROTEIN J1 VACCINIA VIRUS (STRAIN COPENHAGEN) 22-56 VJ01_VACCV PROTEIN J1 VACCINIA VIRUS (STRAIN WR) 22-56 VJ01_VARV PROTEIN J1 VARIOLA VIRUS 22-56 VL1_CRPVK PROBABLE L1 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN 331-383 KANSAS) VL1_FPVL PROBABLE L1 PROTEIN AVIAN PAPILLOMA VIRUS FPV-L 38-65 VL1_HPV08 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 354-392 VL1_HPV18 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 183-210 VL1_HPV33 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 19-46 VL1_HPV41 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 345-372 VL1_HPV51 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 51 19-46 VL1_HPV58 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 45-72 VL2_HPV1A PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 407-445 VL2_HPV41 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 415-442 VL3_REOVD MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 31 STRAIN DEARING) 330-357 VL3_REOVL MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 1/STRAIN LANG) 330-357 VL96_IRV1 L96 PROTEIN TIPULA IRIDESCENT VIRUS 146-180 625-652 PVM1_REOVL MINOR VIRION STRUCTURAL PROTEIN MU REOVIRUS (TYPE 1/STRAIN LANG) 290-317 PVM21_REOVD MAJOR VIRION STRUC PROTEIN MU-1/MU- REOVIRUS (TYPE 3/STRAIN DEARING) 625-662 PVM22_REOVD MAJOR VIRION STRUC PROTEIN MU-1/MU- REOVIRUS (TYPE 3/STRAIN DEARING) 624-661 PVM2_REOVJ MAJOR VIRION STRUC PROTEIN MU-1/MU- REOVIRUS (TYPE 2/STRAIN D5/JONES) 624-661 PVM3_REOVD MAJOR NONSTRUCTURAL PROTEIN MU-N REOVIRUS (TYPE 3/STRAIN DEARING) 159-186 343-370 456-483 631-691 PVMA2_BRSVA MATRIX GLYCOPROTEIN M2 BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 124-152 PVMA2_HRSVA MATRIX GLYCOPROTEIN M2 HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 124-151 PVMAT_BRSVA MATRIX PROTEIN BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) 219-246 PVMAT_HRSVA MATRIX PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 219-246 PVMAT_INCIJ MATRIX (M) PROTEIN INFLUENZA C VIRUS (STRAIN C/JJ/50) 151-185 PVMAT_NDVA MATRIX PROTEIN NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 247-274 VICTORIA/32) PVMAT_P12HT MATRIX PROTEIN HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 96-123 PVMAT_P13B MATRIX PROTEIN BOVINE PARAINFLUENZA 3 VIRUS 201-231 PVMAT_P13H4 MATRIX PROTEIN HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 201-231 PVMAT_SV41 MATRIX PROTEIN SIMIAN VIRUS 41 323-353 PVME1_CVBM E1 GLYCOPROTEIN BOVINE CORONA VIRUS (STRAIN MEBUS) 175-209 PVME1_CVTKE E1 GLYCOPROTEIN TURKEY ENTERIC CORONA VIRUS 175-209 PVME1_IBV6 E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82) 21-48 184-218 PVME1_IBVB E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 21-48 184-218 BEAUDETTE) PVME1_IBVB2 E1 GLYCOPROTEIN AVIAN INFECIIOUS BRONCHITIS VIRUS (STRAIN 21-48 184-218 BEAUDETTE M42) PVME1_IBVK E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 184-218 PVMP_CAMVC MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 220-254 273-324 PVMP_CAMVD MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/11) 29-56 220-254 273-324 PVMP_CAMVE MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 227-254 273-324 PVMP_CAMVN MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 220-254 273-324 PVMP_CAMVS MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 220-254 273-324 PVMP_CAMVW MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN W260) 220-254 273-324 PVMP_CERV MOVEMENT PROTEIN CARNATION ETCHED RING VIRUS 26-53 100-127 PVMP_SOCMV MOVEMENT PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 4-31 78-118 PVMSA_HPBHE MAJOR SURFACE ANTIGEN PRECURSOR HERON HEPATITIS B VIRUS 294-328 PVMT1_DHVII MATRIX PROTEIN 1 DHORI VIRUS (STRAIN INDIAN/1313/61) 38-65 237-264 PVMT8_MYXVL M-T8 PROTEIN MYXOMA VIRUS (STRAIN LAUSANNE) 163-190 PVMT9_MYXVL MT-9 PROTEIN MYXOMA VIRUS (STRAIN LAUSANNE) 465-492 PVN34_ROTPC NONSTRUCTURAL PROTEIN NS34 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 83-113 PVNCN_PAVBO PROBABLE NONCAPSID PROTEIN NP1 BOVINE PARVOVIRUS 149-176 PVNCS_ADVG NONCAPSID PROTEIN NS-1 ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G) 86-148 PVNCS_AEDEV NONCAPSID PROTEIN NS-1 AEDES DENSONUCLEOSIS VIRUS (STRAIN GKV 002 002) 14-41 279-339 487-517 585-612 780-817 821-848 PVNCS_MUMIM NONCAPSID PROTEIN NS-1 MURINE MINUTE VIRUS (STRAIN MVM1) 35-62 262-289 PVNCS_MUMIV NONCAPSID PROTEIN NS-1 MURINE MINUTE VIRUS 35-62 262-289 PVNCS_PAVHB NONCAPSID PROTEIN NS-1 HUMAN PARVOVIRUS B19 236-270 PVNCS_PAVHH NONCAPSID PROTEIN NS-1 HAMSTER PARVOVIRUS H1 35-62 PVNCS_PAVPN NONCAPSID PROTEIN NS-1 PORCINE PARVOVIRUS (STRAIN NADL-2) 24-55 169-196 316-346 PVNS1_EHDV2 NONSTRUCTURAL PROTEIN NS1 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 411-438 2/STRAIN ALBERTA) PVNS1_IAALA NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77) 171-198 PVNS1_IAANN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 171-198 PVNS1_IACHI NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 171-198 PVNS1_IACKG NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 171-198 PVNS1_IACKJ NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24) 168-195 PVNS1_IADA2 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 171-198 PVNS1_IAFOM NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 171-198 PVNS1_IAFOW NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 171-198 PVNS1_IALEI NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 171-198 PVNS1_IAMA6 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76) 171-198 PVNS1_IAPI1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79) 171-198 PVNS1_IAP13 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/358/79) 171-198 PVNS1_IATXB NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM- 171-198 GLILIT/1492-B/82) PVNS1_IATKC NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63) 171-198 PVNS1_IATRT NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72) 171-198 PVNS1_IAUDO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 171-198 PVNS1_IAUSS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 171-198 PVNS1_INBPA NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/PA/79) 171-198 PVNS2_IATKR NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 87-114 PVNS2_INBLE NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/LEE/40) 51-78 PVNS2_INBYA NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73) 51-78 PVNS2_INCJJ NONSTRUCTURAL PROTEIN NS2 INFLUENZA C VIRUS (STRAIN C/JJ/50) 71-98 PVNS3_CVPFS NONSTRUCTURAL PROTEIN 3-1 PORCINE TRANSMISSIBLE GASTROENTERITIS 9-36 CORONAVIRUS (STRAIN FS772 PVNS4_CVH22 NONSTRUCTURAL PROTEIN 4 HUMAN CORONAVIRUS (STRAIN 229E) 9-36 PVNS4_RSV NONSTRUCTURAL PROTEIN NS4 RICE STRIPE VIRUS 6-40 PVNS7_CVCAE NONSTRUCTURAL PROTEIN 7 CANINE ENTERIC CORONAVIRUS (STRAIN K378) 11-45 PVNS7_CVFE3 NONSTRUCTURAL PROTEIN 7 FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683) 8-42 PVNS7_CVPFS NONSTRUCTURAL PROTEIN 7 PROCINE TRANSMISSIBLE GASTROENTERITIS 34-61 CORONAVIRUS (STRAIN FS772 PVNS7_CVPPU NONSTRUCTURAL PROTEIN 7 PORCINE TRANSMISSIBLE GASTROENTERITIS 34-61 CORONAVIRUS (STRAIN PUR1) PVNS7_CVPRM NONSTRUCTURAL PROTEIN 7 PORCINE RESPIRATORY CORONAVIRUS 34-61 PVNS7_FIPV NONSTRUCTURAL PROTEIN 7 FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 8-42 PVNSC_PI1HE NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/83) 41-75 PVNSC_PI3HA NONSTRUCrURAL PROTEIN C HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 58-99 PVNSM_INSV NONSTRUCTURAL PROTEIN NS-M IMPATIENS NECROTIC SPOT VIRUS 262-296 PVNST_BUNLC NONSTRUCTURAL PROTEIN NS-S BUNYAVIRUS LA CROSSE 57-84 PVNST_TOSV NONSTRUCTURAL PROTEIN NS-S TOSCANA VIRUS 146-180 PVNUC_EBOV NUCLEOPROTEIN EBOLA VIRUS 131-369 PVNUC_IAANA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANAS 378-405 ACUTA/PRIMORJE/695/76) PVNUC_IAANN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 378-405 PVNUC_IABRA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78) 378-405 PVNUC_IABUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/BUDGERIGAR/HOKKAIDO/1/77) PVNUC_IACAL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78) 378-405 PVNUC_IACKG NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 378-405 PVNUC_IACKP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/CHICKEN/PENNSYLVANIA/1/83) PVNUC_IADAU NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/AUSTRALIA/749/80) 378-405 PVNUC_IADBE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/BEIJING/1/78) 378-405 PVNUC_IADCZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/DUCK/CZECHOSLOVAKIA/56) PVNUC_IADE1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/) 378-405 PVNUC_IADE2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/62) 378-405 PVNUC_IADHK NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/HONG KONG/7/75) 378-405 PVNUC_IADM2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74) 378-405 PVNUC_IADMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN AA/DUCK/MANITOBA/1/53) 378-405 PVNUC_IADNZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/NEW 378-405 ZEALAND/31/76) PVNUC_IADU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/2/60) 378-405 PVNUC_IAEN5 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55) 378-405 PVNUC_IAFOM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 378-405 PVNUC_IAFOW NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 378-405 PVNUC_IAFFD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 378-405 VIRUS/DOBSON/‘DUTCH’/27) PVNUC_IAFFR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 378-405 VIRUS/ROSTOCK/34) PVNUC_IAGRE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GREY 378-405 TEAL/AUSTRALIA/2/79) PVNUC_IAGU1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/5/77) 378-405 PVNUC_IAGU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 378-405 PVNUC_IAGU3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1824/78) 378-405 PVNUC_IAGU4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1815/79) 378-405 PVNUC_IAGUA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84) 378-405 PVNUC_IAGUM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/GULL/MASSACHUSETTS/26/80) PVNUC_IAGUN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MINNESOTA/945/80) 378-405 PVNUC_IAHIC NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HICKOX/40) 378-405 PVNUC_IAHJI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/JILLIN/1/89) 378-405 PVNUC_IAHLO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73) 378-405 PVNUC_IANM1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63) 378-405 PVNUC_IAHO1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68) 378-405 PVNUC_IAHO2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83) 378-405 PVNUC_IAHPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 378-405 PVNUC_IAHTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 378-405 PVNUC_IAKIE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 378-405 PVNUC_IALEN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 378-405 PVNUC_IAMAA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/MALLARD/ASTRAKHAN/244/82) PVNUC_IAMAN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW 378-405 YORK/6750/78) PVNUC_IAMIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 378-405 PVNUC_IANEJ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NEW JERSEY/8/76) 378-405 PVNUC_LANT6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NT/60/68) 378-405 PVNUC_IAOHI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/OHIO/4/83) 378-405 PVNUC_IAPAR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73) 378-405 PVNUC_IAPUE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 378-405 PVNUC_IARUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW 378-405 JERSEY/47/85) PVNUC_IASE0 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/SEAL/MASSACHUSETTS/1/80) PVNUC_IASH2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/SHEARWATER/AUSTRALIA/72) PVNUC_IASIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 378-405 PVNUC_IATE1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEAL/ICELAND/29/80) 378-405 PVNUC_IATKN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/TURKEY/MINNESOTA/1661/81) PVNUC_IATKO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/1732/66) 378-405 PVNUC_IATRS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61) 378-405 PVNUC_IATRT NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72) 378-405 PVNUC_IATX7 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77) 378-405 PVNUC_IAUDO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 378-405 PVNUC_IAUSS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 378-405 PVNUC_IAVI6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/VICTORIA/5168) 378-405 PVNUC_IAWHN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84) 378-405 PVNUC_IAWHP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/PACIFIC 378-405 OCEAN/19/76) PVNUC_IAWIL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 378-405 PVNUC_IAWIS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88) 378-405 PVNUC_1AZ29 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/29/37) 378-405 PVNUC_IAZ41 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/41/49) 378-405 PVNUC_IAZCA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/CAMBRIDGE/1/35) 378-405 PVNUC_IAZDA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/DANDONG/9/83) 378-405 PVNUC_IAZGE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/GERMANY/2/81) 378-405 PVNUC_IAZH1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/6/76) 378-405 PVNUC_IAZH3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 378-405 PVNUC_IAZH4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/127/82) 378-405 PVNUC_IAZI1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 378-405 PVNUC_IAZI2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31) 378-405 PVNUC_IAZI3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46) 378-405 PVNUC_KAZJ1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/437/76) 378-405 PVNUC_IAZJ2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/2/79) 378-405 PVNUC_IAZJ3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/141/81) 378-405 PVNUC_IAZJ4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89) 378-405 PVNUC_IAZJA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42) 378-405 PVNUC_IAZMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54) 378-405 PVNUC_IAZNE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/SWINE/NETHERLANDS/12/85) PVNUC_IAZOH NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35) 378-405 PVNUC_IAZON NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81) 378-405 PVNUC_IAZTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77) 378-405 PVNUC_IAZW1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57) 378-405 PVNUC_IAZW2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/61) 378-405 PVNUC_INCCA NUCLEOPROTEIN INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 99-126 416-443 451-478 PVNUC_MABVM NUCLEOPROTEIN MARBURG VIRUS (STRAIN MUSOKE) 366-407 PVNUC_MABVP NUCLEOPROTEIN MARBURG VIRUS (STRAIN POPP) 366-407 PVO01_VACCC PROTEIN O1 VACCINIA VIRUS (STRAIN COPENHAGEN) 7-37 109-138 581-608 PVO01_VARV PROTEIN O1 VARIOLA VIRUS 7-37 109-138 581-608 PVOR1_FXMV 152 KD PROTEIN FOXTAIL MOSAIC VIRUS 1023- 1050 PVOR1_NMV 186 KD PROTEIN NARCISSUS MOSAIC VIRUS 996- 1527- 1023 1561 PVOR1_PMV I76 KD PROTEIN PAPAYA MOSAIC POTEXVIRUS 948-978 1481- 1532 PVOR1_PVMR 223 KD PROTEIN POTATO VIRUS M (STRAIN RUSSIAN) 597-627 PVOR1_PVX 165 KD PROTEIN POTATO VIRUS X 698-725 1017- 1044 PVOR1_PVXX3 165 KD PROTEIN POTATO VIRUS X (STRAIN X3) 698-725 1017- 1044 PVOR1_SMYEA 150 KD PROTEIN STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS 312-342 691-721 PYP10_NPVAC P10 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 7-41 VIRUS PYP10_NPVOP P10 PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 7-48 VIRUS PVP10_NPVSE P10 PROTEIN SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS VIRUS 6-33 37-64 (STRAIN US) PVP10_RGDV NONSTRUCTURAL PROTEIN PNS10 RICE GALL DWARF VIRUS 205-252 PVP10_WTV NONSTRUCTURAL PROTEIN PNS10 WOUND TUMOR VIRUS 151-181 227-254 PVP11_RDV NONSTRUCTURAL PROTEIN PNS13 RICE DWARF VIRUS 53-80 PVP12_WTV NONSTRUCTURAL PROTEIN PNS12 WOUND TUMOR VIRUS 81-108 PVP18_WTVNJ NONSTRUCTURAL PROTEIN PNS12 WOUND TUMOR VIRUS (STRAIN NJ) 81-108 PVP19_AMCV CORE PROTEIN P19 ARTICHOKE MOTTLED CRINKLE VIRUS 73-100 PVP19_TBSVC CORE PROTEIN P19 TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY) 73-100 PVP23_HSVSA PROBABLE CAPSID PROTEIN VP23 HERPESVIRUS SAIMIRI (STRAIN 11) 2-29 PVP26_HSVEB CAPSID PROTEIN VP26 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 36-63 PVP26_HSVSA CAPSID PROTEIN VP26 HERPES VIRUS SAIMIRI (STRAIN 11) 48-75 PVP2_AHSV4 OUTER CAPSID PROTEIN VP2 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN 277-304 410-437 632-662 907-934 VACCINE) PVP2_BTV13 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 815-846 PVP2_BTV1A OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 898-925 PVP2_BTV1S OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH 119-146 AFRICA) PVP2_EHDV1 OUTER CAPSID PROTEIN VP2 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 72-103 415-453 PVP2_ROTBR RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN RF) 39-94 521-553 PVP2_ROTBU RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN UK) 39-94 524-554 PVP2_ROTHW RNA-BINDING PROTEIN VP2 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 70-101 533-567 PVP2_ROTPC RNA-BINDING PROTEIN VP2 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 52-99 128-156 518-545 705-746 PVP2_ROTSI RNA-BINDING PROTEIN VP2 SIMIAN II ROTAVIRUS (STRAIN SA11) 36-96 PVP30_ASFE7 PHOSPHOPROTEIN P30 AFRICAN SWINE FEVER VIRUS (STRAIN E-75) 39-75 PVP32_ASFB7 PHOSPHOPROTEIN P32 AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 39-75 PVP35_EBOV POLYMERASE COMPLEX PROTEIN VP35 EBOLA VIRUS 81-119 PVP35_MABVM POLYMERASE COMPLEX PROTEIN VP35 MARBURG VIRUS (STRAIN MUSOKE) 80-107 211-258 PVP35_MABVP POLYMERASE COMPLEX PROTEIN VP35 MARBURG VIRUS (STRAIN POPP) 80-107 231-258 PVP35_NPVAC EARLY 35 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 270-297 VIRUS PVP35_NPVBM EARLY 35 KD PROTEIN BOMBYX MORJ NUCLEAR POLYHEDROSIS VIRUS 68-102 PVP35_VACCV IMMUNODOM ENV PRO P35 VACCINIA VIRUS (STRAIN WR) 178-205 PVP39_NPVAC MAJOR CAPSID PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 134-161 264-291 VIRUS PVP39_NPVOP MAJOR CAPSID PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 263-290 VIRUS PVP3_AHSV4 VP3 CORE PROTEIN AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN 132-159 VACCINE) PVP3_BTV10 VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 214-252 PVP3_BTV17 VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 214-252 PYP3_BTVIA VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 214-252 PVP3_EHDV1 VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 209-243 798-832 PVP3_EHDVA VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 798-832 2/STRAIN AUSTRAL PVP3_GFLV P3 PROTEIN GRAPEVINE FANLEAF VIRUS 99-133 PVP3_ROTPC INNER CORE PROTEIN VP3 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 39-66 329-384 PVP3_ROTS1 INNER CORE PROTEIN VP3 SIMIAN II ROTAVIRUS (STRAIN SA11) 26-67 350-377 451-497 619-692 PVP40_EBV CAPSID PROTEIN P40 EPSTEIN-BARR VIRUS (STRAIN B95-8) 440-470 PVP40_HSVSA CAPSID PROTEIN P40 HERPESVIRUS SAIMIRI (STRAIN 11) 205-232 344-372 PVP40_ILTVT CAPSID PROTEIN P40 INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 515-549 THORNE V882) PVP40_VZVD CAPSID PROTEIN P40 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 174-208 495-522 PVP41_ROTS1 OUTER CAPSID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11) 8-35 589-619 PVP42_ROTS1 OUTER CAPSID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11) 8-35 584-622 PVP4A_VACCC MAJOR CORE PROTEIN P4A PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 48-75 PVP4A_VACCV MAJOR CORE PROTEIN P4A PRECURSOR VACCINIA VIRUS (STRAIN WR) 46-75 PVP4A_VARV MAJOR CORE PROTEIN P4A PRECURSOR VARIOLA VIRUS 48-75 PVP4B_FOWPV MAJOR CORE PROTEIN P4B PRECURSOR FOWLPOX VIRUS 80-110 PVP4B_VACCC MAJOR CORE PROTEIN P4B PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 7-37 PVP4B_VACCV MAJOR CORE PROTEIN P4B PRECURSOR VACCINIA VIRUS (STRAIN WR) 7-37 PVP4B_VARV MAJOR CORE PROTEIN P4B PRECURSOR VARIOLA VIRUS 7-37 PVP4_BTV10 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 34-61 576-603 PVP4_BTV11 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 34-61 576-603 PVP4_BTV13 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 34-61 576-603 PVP4_BTV2A OUTER CAPSID PROTEIN VP4 NEBRASKA CALF DIARRHEA VIRUS (STRAIN NCDV- 552-622 LINCOLN) PVP4_NCDV OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS SEROTYPE 6/STRAIN B641) 595-629 PVP4_ROTB4 OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (STRAIN C486) 8-35 584-622 PVP4_ROTBC OUTER CPASID PROTEIN VP4 BOVINE ROTAVIRUS (STRAIN UX) 595-629 PVP4_ROTBU OUTER CAPSID PROTEIN VP4 EQUINE ROTAVIRUS (STRAIN H-2) 112-146 235-269 552-629 PVP4_ROTEH OUTER CAPSID PROTEIN VP4 ROTAVIRUS (GROUP B/STRAIN IDIR) 5-32 PVP4_ROTG1 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076) 8-35 572-628 PVP4_ROTH1 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5) 8-35 279-306 565-621 PVP4_ROTH5 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M) 8-35 112-139 584-629 PVP4_R0TH6 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M) 8-35 279-306 565-621 PVP4_ROTIID OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 8-35 271-306 565-621 PVP4_ROT1U OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN K8) 8-35 111-138 PVP4_ROTHK OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN KU) 8-35 77-104 279-306 577-621 PVP4_ROTHL OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN L26) 8-35 279-306 565-621 PVP4_ROTHM OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37) 8-35 572-610 PVP4_ROTHN OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13 8-35 573-628 PVP4_ROTHP OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P) 8-35 577-621 PVP4_ROTHR OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV) 8-38 105-135 235-262 PVP4_ROTHT OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3) 8-35 572-627 PVP4_ROTHV OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70) 8-35 279-306 590-617 PVP4_ROTHW OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 8-35 577-621 PVP4_ROTP5 OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 112-146 584-625 PVP4_ROTPC OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 5-33 115-161 293-320 PVP4_ROTPG OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 8-35 572-628 PVP4_ROTPY OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (STRAIN YM) 8-35 112-146 584-625 PVP4_ROTRH OUTER CAPSID PROTEIN VP4 RHESUS ROTAVIRUS 8-38 584-622 PVP4_ROTSF OUTER CAPSID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11-FEM) 8-35 589-619 PVP4_ROTSS OUTER CAPSID PROTEIN VP4 SIMIAN II ROTAVIRUS (STRAIN SA11-SEM) 8-35 130-157 584-622 PVP4_WTV NONSTRUCTURAL PROTEIN PNS4 WOUND TUMOR VIRUS 28-62 PVP5_AHSV4 OUTER CAPSID PROTEIN VP5 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN 113-183 191-218 VACCINE) PVP5_BTV10 OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 53-80 99-126 PVP5_BTV11 OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 53-80 92-126 PVP5_BTV11 OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 53-80 PVP5_BTVIA OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 53-80 89-126 PVP5_BTVIS OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH 53-80 92-126 148-182 AFRICA) PVP5_BTV2A OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 53-80 89-126 PVP5_EHDV1 OUTER CAPSID PROTEIN VP5 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 31-80 191-218 399-426 PVP5_WTV OUTER COAT PROTEIN P5 WOUND TUMOR VIRUS 648-675 PVP61_BTV10 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 161-193 PVP61_MRDV PROB NONSTRUCT 41.0 KD PRO MAIZE ROUGH DWARF VIRUS 153-202 PVP61_NPVAC 61 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 36-63 VIRUS PVP62_BTV10 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 157-189 PVP64_NPVOP MAJOR ENV GLYCOPRO PRECURSOR ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 45-72 VIRUS PVP67_NPVAC MAJOR ENV GLYCOPRO PRECURSOR AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 44-81 VIRUS PVP6_BTV11 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 157-189 PVP6_BTV13 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 157-189 PVP6_BTV17 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 157-189 PVP6_BTV1S VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH 161-193 AFRICA) PVP6_BTV2A VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 133-172 PVP6_RDV STRUCTURAL PROTEIN P6 RICE DWARF VIRUS 10-37 354-381 PVP74_NPVAC P74 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 413-440 VIRUS PVP75_HSVSA PROBABLE MEMBRANE ANTIGEN 75 HERPES VIRUS SAIMIRI (STRAIN 11) 181-208 929-977 PVP79_NPVAC 79 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 44-78 370-397 VIRUS PVP7_EHDV1 VP7 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 16-43 PVP7_WTV NONSTRUCTURAL PROTEIN PNS7 WOUND TUMOR VIRUS 458-485 PVP80_NPVAC CAPSID PROTEIN P80 AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 101-142 240-298 VIRUS PVP87_NPVOP CAPSID PROTEIN P87 ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 132-159 VIRUS PVP8_BTV10 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 105-132 PVP8_FOWPV STRUCTURAL PROTEIN VP8 PRECURSOR FOWLPOX VIRUS 211-238 PVP8_WTV OUTER CAPSID PROTEIN P8 WOUND TUMOR VIRUS 29-56 112-143 PVP9_RDV NONSTRUCTURAL PROTEIN PNS9 RICE DWARF VIRUS 197-224 PVP9_WTV STRUCTURAL PROTEIN P9 WOUND TUMOR VIRUS 22-49 PVP9_WTVNJ STRUCTURAL PROTEIN P9 WOUND TUMOR VIRUS (STRAIN NJ) 22-49 PVPHE_NPVAC 29 KD POLYHEDRAL ENVELOPE PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 196-223 VIRUS PVPHE_NPVOP 32 KD POLYHEDRAL ENVELOPE PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 127-186 238-263 VIRUS PVPRT_ADEM1 ENDOPROTEASE MOUSE ADENOVIRUS TYPE 167-194 PVPU_HVIA2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (ARV2/SF2 3-31 ISOLATE) PVPU_HVIB1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (B1110 AND 5-48 IIXB3 ISOLATES) PVPU_HVIB8 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (B118 ISOLATE) 21-48 PVPU_HVIBN VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (BRAIN 22-49 ISOLATE) PVPU_HVIBR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (BRU ISOLATE) 3-48 PVPU_HVIC4 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (CDC-451 3-30 ISOLATE) PVPU_HVIEL VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (ELI ISOLATE) 6-33 PVPU_HVIH2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE (HXB2 ISOLATE) 5-48 PVPU_HVIJ3 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE) 2-29 PVPU_HVIJR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF 22-49 ISOLATE) PVPU_HVIMA VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL 5-32 ISOLATE) PVPU_HVIND VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK 6-33 ISOLATE) PVPU_HVIPV VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 5-48 ISOLATE) PVPU_HYISI VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162 22-49 ISOLATE) PVPU_SIVCZ VPU PROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 51-78 PVPX_LDV VPX PROTEIN LACTATE DEHYDROGENASE-ELEVATING VIRUS 64-94 PVRNA_BSMV ALPHA-A PROTEIN BARLEY STRIPE MOSAIC VIRUS 1051-1078 PVS06_ROTBS VP6 PROTEIN BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 6-43 PVS06_ROTGA VP6 PROTEIN ROTAVIRUS (GROUP B/STRAIN ADRV) 114-144 PVS06_ROTGI VP6 PROTEIN ROTAVIRUS (GROUP B/STRAIN IDIR) 28-55 PVS06_ROTHC VP6 PROTEIN HUMAN ROTAVIRUS 9-44 PVS06_ROTPC VP6 PROTEIN PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 9-44 PVS07_ROTBJ GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN KN-4) 2-29 PVS07_ROTBU NONSTRUCTURAL PROTEIN NCVP3 BOVINE ROTAVIRUS (STRAIN UK) 91-146 199-236 PVS07_ROTP5 NONSTRUCTURAL PROTEIN NCVP3 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 91-146 202-236 PVS07_ROTS1 NONSTRUCTURAL PROTEIN NCVP3 SIMIAN II ROTAVIRUS (STRAIN SA11) 91-146 199-236 PVS08_ROTBU NONSTRUCTURAL PROTEIN NS2/VP9 BOVINE ROTAVIRUS (STRAIN UK) 164-201 PVS08_ROTS1 NONSTRUCTURAL PROTEIN NCVP4 SIMIAN II ROTAVIRUS (STRAIN SA11) 164-201 217-251 PVS09_ROTB4 GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641) 2-29 PVS09_ROTB5 GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN A5) 2-29 PVS09_ROTBU GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN UK) 2-29 PVS09_ROTGA GLYCOPROTEIN VP7 PRECURSOR ROTAVIRUS (GROUP B/STRAIN ADRV) 210-237 PVS09_R0TH4 GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4) 2-29 PVS09_ROTHA GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5) 2-29 PVS09_ROTHB GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37) 2-29 PVS09_ROTHD GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 2-29 PVS09_ROTHH GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126) 2-29 PVS09_ROTHM GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37) 2-29 PVS09_ROTHO GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO AND STRAIN 2-29 D) PVS09_ROTHP GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P) 2-29 PVS09_ROTHS GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2) 2-29 PVS09_ROTHW GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 2-29 PVS09_ROTP2 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN AT/76) 2-29 PVS09_ROTP3 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN CRW-8) 2-29 PVS09_ROTS1 GLYCOPROTEIN VP7 SIMIAN II ROTAVIRUS (STRAIN SA11) 2-29 PVS10_ROTBS MINOR OUTER CAPSID PROTEIN BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 125-152 PVS10_ROTSI NONSTRUCTURAL GLYCOPROTEIN NCVP5 SIMIAN II ROTAVIRUS (STRAIN SA11) 113-140 PVS11_ROTBU MINOR OUTER CAPSID PROTEIN BOVINE ROTAVIRUS (STRAIN UK) 13-40 114-145 PVS11_ROTBV MINOR OUTER CAPSID PROTEIN BOVINE ROTAVIRUS (STRAIN VMR1) 13-40 114-145 PVS11_ROTGA NONSTRUCTURAL PROTEIN ROTAVIRUS GROUP B/STRAIN ADR (ADULT DIARRHEA 31-60 ROTAVIRUS) PVS11_ROTH5 MINOR OUTER CAPSID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5) 13-40 PVS11_ROTHD MINOR OUTER CAPSID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 13-40 111-145 PVS11_ROTHW MINOR OUTER CAPSID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 111-145 PVS11_ROTRA MINOR OUTER CAPSID PROTEIN RABBIT ROTAVIRUS (STRAIN ALABAMA) 118-145 PVS11_ROTSI MINOR OUTER CAPSID PROTEIN SIMIAN II ROTAVIRUS (STRAIN SA11) 111-146 PVSH_MUMPI SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS 9-46 PVSH_MUMPA SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN MATSUYAMA) 12-41 PVSH_MUMPB SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN BELFAST) 9-41 PVSH_MUMPE SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN ENDERS) 9-46 PVSH_MUMPJ SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN JERYL-LYNN) 9-46 PVSH_MUMPK SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN KILHAM) 9-46 PVSH_MUMPL SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN BRISTOL 1) 9-46 PVSH_MUMPM SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 12-41 PVSH_MUMPR SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN RW) 9-41 PVSH_MUMPU SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN URABE VACCINE AM9) 12-41 PVS11_REOVD SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 3/STRAIN DEARING) 26-63 71-122 127-168 222-259 PVS11_REOVJ SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 2/STRAIN D5/JONES) 4-104 130-193 PSV11_REOVL SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 1/STRAIN LANG) 4-52 75-104 112-160 PVS12_REOVD SIGMA 2 PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 350-384 PVS13_REOVJ SIGMA 3 PROTEIN REOVIRUS (TYPE 2/STRAIN D5/JONES) 289-316 PVSIS_REOVD SIGMA 1-S PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 90-117 PVSIS_REOVL SIGMA 1-S PROTEIN REOVIRUS (TYPE 1/STRAIN LANG) 50-77 PVT3A_CAPV1 PROTEIN T3A CAPRIPOXVIRUS (STRAIN INS-1) 124-158 PVT5_SFVKA PROTEIN T5 SHOPE FIBROMA VIRUS (STRAIN KASZA) 250-277 PVTER_EBV PROBABLE DNA PACKAGING PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 234-290 PVTER_HCMVA PROBABLE DNA PACKAGING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 417-451 PVTER_HSV6U PROBABLE DNA PACKAGING PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 176-203 PVTER_HSV11 PROBABLE DNA PACKAGING PROTEIN ICTALURID HERPESVIRUS 1 710-737 PVTER_VZVD PROBABLE DNA PACKAGING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 394-421 PVTP3_TTVIV VIRAL PROTEIN TPX THERMOPROTEUS TENAX VIRUS 1 (STRAIN VT3) 169-196 PVTPX_TTV1 VIRAL PROTEIN TPX THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRAI) 169-196 PVV_P14HA V PROTEIN HUMAN PARAINFLUENAZ 4A VIRUS (STRAIN TOSHIBA) 4-38 PY101_SSV1 HYPOTHETICAL 10.1 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 25-65 PY108_SSV1 HYPOTHETICAL 10.8 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 4-61 PY119_SSV1 HYPOTHETICAL 11.9 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 30-78 PY11K_TYDVA HYPOTHETICAL 11.2 KD PROTEIN TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA) 53-87 PY13K_NPVAC HYPOTH 13.1 KD IN 39 KD 5′REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 85-112 VIRUS PY13K_SSV1 HYPOTHETICAL 13.2 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 59-86 PY14K_SSV1 HYPOTHETICAL 13.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 5-39 PY16K_NPVAC HYPOTH IN 39 KD PROTEIN 5′REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 80-107 VIRUS PY16K_SSV1 HYPOTHETICAL 15.6 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 77-111 PY17K_SSV1 HYPOTHETICAL 17.8 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 9-36 119-153 PY18K_MSVN HYPOTHETICAL 17.7 KD PROTEIN MAIZE STREAK VIRUS (NIGERIAN ISOLATE) 34-61 PY18K_MSVS HYPOTHETICAL 17.2 KD PROTEIN MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE) 34-61 PY20K_SSV1 HYPOTHETICAL 20.4 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 76-103 PY28K_SSV1 HYPOTHETICAL 28.5 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 93-164 PY2_SOCMV HYPOTHETICAL PROTEIN 2 SOYBEAN CHLOROTIC MOTTLE VIRUS 118-148 PY31K_SSV1 HYPOTHETICAL 31.5 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 24-97 PY32K_SSV1 HYPOTHETICAL 31.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 233-267 PY38K_NPVAC HYPOTHETICAL 37.7 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 133-184 VIRUS PY3_SOCMV HYPOTHETICAL PROTEIN 3 SOYBEAN CHLOROTIC MOTTLE VIRUS 122-149 PY7_SOCMV HYPOTHETICAL PROTEIN 7 SOYBEAN CHLOROTIC MOTTLE VIRUS 56-94 PY85K_SSV1 HYPOTHETICAL 85.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 81-121 546-573 658-700 PY8_SOCMV HYPOTHETICAL PROTEIN 8 SOYBEAN CHLOROTIC MOTTLE VIRUS 13-40 PYB01_FOWPM HYPOTHETICAL BAMHI-ORF1 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 74-108 152-179 184-218 PYB05_FOWPM HYPOTHETICAL BAMHI-ORF5 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 62-89 PYB10_FOWPM HYPOTHETICAL BAMHI-ORF10 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 162-197 214-241 PYB12_FOWPM HYPOTHETICAL BAMHI-ORF12 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 11-38 PYB13_FOWPM HYPOTHETICAL BAMHI-ORF13 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 128-167 PYBL3_FOAMV BEL-3 PROTEIN HUMAN SPUMARETROVIRUS 87-116 PYDH1_HSVS7 HYPOTH 24.1 KD IN DHFR 3′REGION HERPESVIRUS SAIMIRI (STRAIN 484-77) 161-188 PYDH1_HSVSC HYPOTH 28.7 KD IN DHFR 3′REGION HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 52-82 PYDH4_HSVSC HYPOTH 9.9 KD IN DHFR 3′REGION HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 53-83 PYF26_FOWP1 HYPOTHETICAL 25.9 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 8-35 PYF30_FOWP1 HYPOTHETICAL 30.9 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 170-204 PYH22_VACCV HYPOTH 21.7 KD HINDIII-C PRO VACCINIA VIRUS (STRAIN WR) 37-64 95-126 144-171 PYHR3_VACCV HYPOTH HOST RANGE 27.4 KD PRO VACCINIA VIRUS (STRAIN WR) 31-58 179-206 PYKR2_EBV HYPOTHETICAL BKRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 90-121 PYKR4_EBV HYPOTHETICAL BKRF4 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 19-53 PYL15_ADE41 HYPOTH 12.4 KD IN 33 DK REGION HUMAN ADENOVIRUS TYPE 41 47-86 PYRL3_EBV HYPOTHETICAL BLRF3 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 27-54 PYOR1_COYMV HYPOTHETICAL 21 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS 94-123 PYOR2_COYMV HYPOTHETICAL 15 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS 35-76 PYOR3_WCMVM HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN M) 64-94 PYOR3_WCMVO HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN O) 65-95 PYOR5_ADEG1 HYPOTHETICAL 31.5 KD PROTEIN AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS) 92-119 PYORA_TTV1 HYPOTHETICAL 8.1 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 23-57 PYORL_TTV1 HYPOTHETICAL 26.8 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 15-42 PYORQ_TTV1 HYPOTHETICAL 7.3 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 3-31 PYORW_TTV1 HYPOTHETICAL 12.1 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 4-40 PYP12_RTBV HYPOTHETICAL P12 PROTEIN RICE TUNGRO BACILLIFORM VIRUS 44-71 PYP12_RTBVP HYPOTHETICAL P12 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) 44-71 PYP24_RTBV HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS 59-101 106-157 PYP24_TRBVP HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) 51-101 106-157 PYP46_RTBV HYPOTHETICAL P46 PROTEIN RICE TUNGRO BACILLIFORM VIRUS 58-107 197-231 PYP46_RTBVP HYPOTHETICAL P46 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) 58-107 197-231 PYP63_NPVAC HYPOTH PRO P6.5 5′REGION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 44-71 VIRUS PYP63_NPVOP HYPOTH 40.0 KD IN P6.5 5′REGION ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS 325-352 VIRUS PYPOH_NPVAC HYPOTH 23.6 KD IN POLYHEDRIN 5′REGIO AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS 116-153 VIRUS PYPOL_IPNVN HYPOTHETICAL 17.0 KD PROTEIN INFECTIOUS PANCREATIC NECROSIS VIRUS (STRAIN N1) 5-32 PYQ3_AMEPV HYPOTHETICAL PROTEIN IN TK 3′REGION AMSACTA MOOREI ENTOMOPOXVIRUS 8-57 59-96 156-183 PYRF1_HSV6G HYPOTHETICAL PROTEIN RF1 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 208-235 PYRF2_HSV6G HYPOTHETICAL PROTEIN RF2 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 223-257 268-299 PYRF3_HSV6G HYPOTHETICAL PROTEIN RF3 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 141-168 PYRF4_HSV6G HYPOTHETICAL PROTEIN RF4 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 404-441 PYRP2_IRV6 REPETITIVE PROTEIN ORF2 CHILO IRIDESCENT VIRUS 10-45 PYVAG_VACCC HYPOTHETICAL 9.3 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 7-34 PYVAH_VACCC HYPOTHETICAL 14.5 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 81-112 PYVDB_VACCC HYPOTHETICAL 8.5 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 29-77 PYVDB_VACCV HYPOTHETICAL 8.5 KD PROTEIN VACCINIA VIRUS (STRAIN WR) 46-77 PYVDH_VACCV HYPOTHETICAL 7.2 KD PROTEIN VACCINIA VIRUS (STRAIN WR) 20-50 PYVGB_VACCC HYPOTHETICAL 8.4 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 10-44 PYZL2_EBV HYPOTHETICAL BZLF2 PROTEIN EPSTEIN-BARR (STRAIN B95-8) 152-179

TABLE VII 107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY (PREFERRED VIRAL SEQUENCES) PCGENE 107 × 178 × 4 All Viruses (no bacieriophages) AREA AREA AREA AREA AREA AREA AREA AREA AREA FILE NAME PROTEIN VIRUS 1 2 3 4 5 6 7 8 9 PPPOL_MLVAK POL POLYPROTEIN AKR MURINE LEUKEMIA VIRUS 453-480 PENV_MLVAV ENV POLYPROTEIN AKV MURINE LEUKEMIA VIRUS 517-544 PPOL_MLVAV POL POLYPROTEIN AKV MURINE LEUKEMIA VIRUS 805-832 PMYC_AVIM2 MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS 232-266 375-402 VIRUS CMII PMYC_AVIMD MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS 233-267 376-403 VIRUS HBI PMYC_AVIMC MYC TRANSFORMING PROTEIN AVIAN MYELOCYTOMATOSIS 233-267 376-403 VIRUS MC29 VLI_FPVL PROBABLE LI PROTEIN AVIAN PAPILLOMAVIRU F V-L 38-65 PVGLB_HSVB1 GLYCOPROTEIN I PRECURSOR BOVINE HERPES VIRUS TYPE I 427-454 PRIR2_HSVB3 RIBONUC-DIPHOSPH BOVINE HERPESVIRUS TYPE I 90-117 REDUCT SMALL CHA (STRAIN 34) PVGLB_HSVB2 GLYCOPROTEIN B-I PRECURSOR BOVINE HERPES VIRUS TYPE 2 447-474 (STRAIN BMV) PENV_BIVO6 ENV POLYPROTEIN BOVINE IMMUNODEFICIENCY 17-44 544-603 631-695 VIRUS (ISOLATE 106) PENV_B1V27 ENV POLYPROTEIN BOVINE IMMUNODEFICIENCY 17-44 573-632 660-724 VIRUS (ISOLATE 127) PENV_BLVAF ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS 304-377 (AMERICAN ISOLATE FLK) PENV_BLVAV ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS 304-377 (AMERICAN ISOLATE VDM) PENV_BLVAU ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS 304-377 (AUSTRALIAN ISOLATE) PENV_BLVB2 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS 311-377 (BELGIUM ISOLATELB285) PENV_BLVB5 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS 304-377 (BELGIUM ISOLATE LBS9) PENV_BLVJ ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS 304-377 (JAPANESE ISOLATEBLV-I) PHEMA_PI3B HEMAGGLUTININ-NEURAMINIDASE BOVINE PARAINFLUENZA 3 VIRUS 66-93 PRRPP_PI3B RNA POLYMERASE ALPHA SUBUNIT BOVINE PARAINFLUENZA 3 VIRUS 34-91 255-282 285-314 PVGLF_PI3B FUSION GLYCOPROTEIN PRECURSOR BOVINE PARAINFLUENZA 3 VIRUS 115-182 207-241 459-497 PVMAT_PI3B MATRIX PROTEIN BOVINE PARAINFLUENZA 3 VIRUS 201-231 PRRPP_BRSVA RNA POLYMERASE ALPHA SUBUNIT BOVINE RESPIRATORY SYNCYTIAL 99-133 VIRUS (STRAIN A51908) PVGLF_BRSVA FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL 38-65 154-202 216-243 442-469 486-531 VIRUS (STRAIN A51908) PVMA2_BRSVA MATRIX GLYCOPROTEIN M2 BOVINE RESPIRATORY SYNCYTIAL 124-152 VIRUS (STRAIN A51908) PVMAT_BRSVA MATRIX PROTEIN BOVINE RESPIRATORY SYNCYTIAL 219-246 VIRUS (STRAIN A51908) PVGLF_BRSVC FUSION GLYCOPROTEIN PRECURSOR BOVINE RESIPRATORY SYNCYTIAL 38-65 154-202 216-243 444-471 488-533 VIRUS (STRAIN COPENHAGEN) PVGLG_BRSVC MAJOR SURFACE GLYCOPROTEIN G BOVINE RESIPRATORY SYNCYTIAL 92-123 VIRUS (STRAIN COPENHAGEN) PVGLF_BRSVR FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL 38-65 154-202 216-243 444-471 488-533 VIRUS (STRAIN RB94) PENV_MLVCB ENY POLYPROTEIN CAS-BR-E MURINE LEUKEMIA VIRUS 510-539 PENV_SIVCZ ENV POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 160-187 253-289 336-366 526-584 627-654 PVPU_SIVCZ VPU PROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 51-78 PPOL_SIVCZ POL POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 242-269 621-685 (SIV(CPZ)) PVE2_CRPVK PROBABLE E2 PROTEIN COTTONTAIL RABBIT (SHOPE) 5-34 PAPILLOMAVIRUS (STRAIN KANSAS) VLI_CRPVK PROBABLE LI PROTEIN COTTONTAIL RABBIT (SHOPE) 331-383 PAPILLOMAVIRUS (STRAIN KANSAS) PPOLG_DENIS GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 1858-1885 2890-2935 2989-3016 (STRAIN SINGAPORE S275/90) PPOLG_DEN26 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681) 1544- 1858- 2908- 2982- 3117- 1571 1885 2935 3016 3147 PPOLG_DEN27 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 1544- 1858- 2485- 2908- 2982- 3117- (STRAIN 16681-P13K53) 1571 1885 2159 2935 3016 3147 PPOLG_DEN2J GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 1544- 1858- 2908- 3117- 3346- (STRAIN JAMAICA) 1571 1885 2935 3147 3373 PPOLG_DEN2P GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 1544- 1858- 2905- 2979- 3114- 3343- (STRAIN PR159151) 1571 1885 2932 3013 3144 3370 PPOLG_DEN2T GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 1134- 1448- (STRAIN TONGA 1974) 1161 1475 PPOLG_DEN3 GENOME POLYPROTEIN DENGUE VIRUS TYPE 3 837-864 1542- 1857- 2494- 2980- 3345- 1569 1884 2521 3014 3372 PPOLG_DEN4 GENOME POLYPROTEIN DENGUE VIRUS TYPE 4 2885- 2977- 3342- 2930 3011 3369 PDPOL_HPBDB DNA POLYMERASE DUCK HEPATITIS B VIRUS 5-39 (BROWN SIIANGHAI DUCK ISOLATE SS) PDPOL_HPBDC DNA POLYMERASE DUCK HEPATITIS B VIRUS 5-39 (STRAIN CHINA) PDPOL_HPBDW DNA POLYMERASE DUCK HEPATITIS B VIRUS 5-39 304-331 (WHITE SHANGHAI DUCK ISOLATE S31) PTEGU_EBV LARGE TEGUMENT PROTEIN EPSTEIN-BARR VIRUS 145-172 1215- 1344- 1876- (STRAIN B95-8) 1242 1371 1903 PUL06_EBV VIRION PROTEIN BBRFI EPSTEIN-BARR VIRUS 115-142 313-340 542-569 (STRAIN B95-8) PUL11_EBV HYPOTHETICAL PROTEIN BBBRFI EPSTEIN-BARR VIRUS 15-42 (STRAIN B95-8) PUL52_EBV PROB DNA REPLICATION EPSTEIN-BARR VIRUS 185-212 987-814 PROTEIN BSLFI (STRAIN B95-8) PUL87_EBV HYPOTHETICAL PROTEIN B(C)RFI EPSTEIN-BARR VIRUS (STRAIN B95-8) 409-436 PUL92_EBV HYPOTHETICAL PROTEIN BDLF4 EPSTEIN-BARR VIRUS (STRAIN B95-8) 107-144 168-196 PVCAP_EBV MAJOR CAPSID PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 847-874 PVGL2_EBV PROBABLE MEMBRANE GLYCOPROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 68-102 PVGLB_EBV GLYCOPROTEIN GP110 PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8) 95-122 631-658 PVGLH_EBV GLYCOPROTEIN GP86 PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8) 549-576 619-648 GP85 PVGP8_EBV PROBABLE MEMBRANE ANTIGEN EPSTEIN-BARR VIRUS (STRAIN B95-8) 104-149 PVP40_EBV CAPSID PROTEIN P40 EPSTEIN-BARR VIRUS (STRAIN B95-8) 440-470 PVTER_EBV PROBABLE DNA PACKAGING PROTEINE PSTEIN-BARR VIRUS (STRAIN B95-8) 234-290 PYKR2_EBV HYPOTHETICAL BKRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 90-121 PYKR4_EBV HYPOTHETICAL BKRE4 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 19-53 PYLR3_EBV HYPOTHETICAL BLRF3 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 27-54 PYZL2_EBV HYPOTHETICAL BZLP2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 152-179 PBZLF_EBV BZLF1 TRANS-ACTI VATOR PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 193-220 PDNBI_EBV MAJOR DNA-BINDING PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 977- 1041- 1004 1068 PEAR_EBV EARLY ANTIGEN PROTEIN R EPSTEIN-BARR VIRUS (STRAIN B95-8) 55-82 PLMP1_EBV LATENT MEMBRANE PROTEIN I EPSTEIN-BARR VIRUS (STRAIN B95-8) 148-175 PLMP2_EBV GENE TERMINAL PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 294-321 PLMP1_EBVC LATENT MEMBRANE PROTEIN I EPSTEIN-BARR VIRUS (STRAIN CAO) 148-175 PLMP1_EBYR LATENT MEMBRANE PROTEIN I EPSTEIN-BARR VIRUS (STRAIN RAJI) 148-175 PUL32_HSVEB MAJOR ENVELOPE GLYCOPROTEIN 300 EQUINE HERPES VIRUS TYPE I 345-375 PVGLC_HSVEB GLYCOPROTEIN C PRECURSOR EQUINE HERPES VIRUS TYPE I 124-151 PVGLB_HSVEI GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE I 443-470 934-961 (ISOLATE HVS2SA) PVGLB_HSVEA GLYCOPROTEIN B PRECURSOR EQUINE HERPES VIRUS TYPE I 443-470 934-961 (STRAIN ABI) PATI2_HSVEB ALPHA TRANS-IND FACTOR 82 KD PRO EQUINE HERPES VIRUS TYPE I 294-321 (STRAIN AB4P) PATIN_HSVEB ALPHA TRANS-IND PROTEIN EQUINE HERPESVIRUS TYPE I 255-289 (STRAIN AB4P) PHELI_HSVEB PROBABLE HELICASE EQUINE HERPES VIRUS TYPE I 184-211 321-348 (STRAIN AB4P) PRIRI_HSVEB RIBONUC-DIPHOSPH REDUCT LARGE CHA EQUINE HERPESVIRUS TYPE I 75-102 (STRAIN AB4P) PTEGU_HSVEB LARGE TEGUMENT PROTEIN EQUINE HERPES VIRUS TYPE I 229-256 566-593 1205-1232 (STRAIN AB4P) PUL06_HSVEB VIRION GENE 56 PROTEIN EQUINE HERPESVIRUS TYPE I 640-667 (STRAIN AB4P) PULI4_HSVEB HYPOTHETICAL GENE 48 PROTEIN EQUINE HERPESVIRUS TYPE I 247-286 (STRAIN AB4P) PUL2I_HSVEB GENE 40 PROTEIN EQUINE HERPESVIRUS TYPE I 44-71 (STRAIN AB4P) PUL37_HSVEB GENE 23 PROTEIN EQUINE HERPES VIRUS TYPE I 715-749 987- (STRAIN AB4P) 1014 PUL52_HSVEB DNA REPLICATION PROTEIN UL52 EQUINE HERPESVIRUS TYPE I 193-220 943-970 (STRAIN AB4P) PVGO3_HSVEB GENE 3 PROTEIN EQUINE HERPES VIRUS TYPE I 146-176 (STRAIN AB4P) PVGLB_HSVEB GLYCOPROTEIN B PRECURSOR EQUINE HERPES VIRUS TYPE I 443-470 934-691 (STRAIN AB4P) PVGLG_HSVEB GLYCOPROTEIN G PRECURSOR EQUINE HERPES VIRUS TYPE I 383-410 (STRAIN AB4P) VIMP_HSVEB PROB INTEGRAL MEMBRANE PROTEIN EQUINE HERPES VIRUS TYPE I 147-174 (STRAIN AB4P) PVP26_HSVEB CAPSID PROTEIN VP26 EQUINE HERPES VIRUS TYPE I 36-63 (STRAIN AB4P) PVGO3_HSVEK GENE 3 PROTEIN EQUINE HERPES VIRUS TYPE I 146-176 (STRAIN KENTUCKY A) PVGLB_HSVEL GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE I 443-470 933-960 (STRAIN KENTUCKY D) PCELF_HSVEB CELL FUSION PROTEIN PRECURSOR EQUINE HERPES VIRUS TYPE I 312-339 (STRAINS AB4P and Ky A) PUL47_HSVE4 97 KD ALPHA TRANS-INDUCING PROTEIN EQUINE HERPES VIRUS TYPE 4 190-217 PVGLB_HSVE4 GLYCOPROTEIN B PRECURSOR EQUINE HERPES VIRUS TYPE 4 486-313 616-643 PVGLG_HSVE4 GLYCOPROTEIN G PRECURSOR EQUINE HERPES VIRUS TYPE 4 271-298 PDUT_HSVE4 DEOXYU 5′-TRIPHOSPH NUCHYDROLASE EQUINE HERPES VIRUS TYPE 4 90-117 (STRAIN 1942) PVE2_PAPVE PROBABLE E2 PROTEIN EUROPEAN ELK PAPILLOMAVIRUS 120-150 PENV_FIVPE ENV POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS 650-680 722-749 (ISOLATE PETALUMA) PPOL_FIVPE POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS 442-473 (ISOLATE PETALUMA) PENV_FIVSD ENV POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS 639-668 720-747 (ISOLATE SAN DIEGO) PENV_FIVT2 ENV POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS 640-679 721-748 (ISOLATE TM2) PENV_FLVC6 ENV POLYPROTEIN FELINE LEUKEMIA PRO VIRUS 509-538 (CLONE CFE-6) PMYC_FLVTT MYC TRANSFORMING PROTEIN FELINE LEUKEMIA PRO VIRUS FTT 393-420 PMYC_FLV MYC TRANSFORMING PROTEIN FELINE LEUKEMIA VIRUS 393-420 PENV_FLVGL ENV POLYPROTEIN FELINE LEUKEMIA VIRUS 490-519 (STRAIN A/GLASGOW-I) PENV_FLVLB ENV POLYPROTEIN FELINE LEUKEMIA VIRUS 510-339 (STRAIN LAMBDA-BI) PENV_FLVSA ENV POLYPROTEIN FELINE LEUKEMIA VIRUS 487-516 (STRAIN SARMA) PENV_MLVF5 ENV POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS 523-553 (ISOLATE 57) PENV_MLVFF ENV POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS 523-553 (ISOLATE FB29) PENV_MLVFP ENV POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS 523-553 (ISOLATE PVC-211) PENY_GALV ENV POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 176-203 523-564 PGAG_GALV GAG POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 396-442 447-474 PPOL_GALV POL POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 535-562 676-703 PDPOL_HPBGS DNA POLYMERASE GROUND SQUIRREL HEPATITIS VIRUS 271-325 PPOLG_HPAV8 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 18F) 203-237 1021- 1117- 1454- 1048 1149 1481 PPOLG_HPAV2 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 24A) 203-237 1021- 1117- 1454- 1048 1149 1481 PPOLG_HPAV4 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 43C) 203-237 1021- 1117- 1454- 1048 1149 1481 PPOLG_HPAVC GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN CR326) 203-237 PPOLG_HPAVG GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN GA76) 182-216 PPOLG_HPAVH GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN HM-175) 203-237 1021- 1103- 1048 1149 PPOLG_HPAVL GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN LA) 203-237 1021- 1103- 1048 1149 PPOLG_HPAVM GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN MBB) 203-237 1021- 1103- 1048 1149 PDPOL_HPBVP DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/ 456-483 STRAIN PHILILPPINO/PFDW294) PDPOL_HPBVZ DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADYW) 443-470 PPOLG_HCV1 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE I) 702-729 PPOLG_HCVBK GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE BK) 702-729 1045- 1072 PPOLG_HCVH GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE H) 702-729 1045- 1072 PPOLG_HCVJ6 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J6) 374-401 2089- 2116 PPOLG_HCVJ8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J8) 1049- 2089- 1076 2116 PPOLG_HCVJT GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-JT) 702-729 1045- 1072 PPOLG_HCVJA GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE JAPANESE) 378-405 702-729 1045- 1072 PPOLG_HCVTW GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE TAIWAN) 702-729 1045- 1072 PAANT_HDVAM DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVD3 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVS1 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 16-43 106-133 PAANT_HDVS2 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 16-43 106-133 PAANT_HDVWO DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVIT DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PAANT_HDVM2 DELTA ANTIGEN HEPATITIS DELTA VIRUS (ISOLATE AMERICAN) 106-133 PPOLN_HEVBU NON-STRUCTURAL POLYPRTEIN HEPATITIS E VIRUS (STRAIN BURMA) 219-246 349-376 PPOLN_HEVME NON-STRUCTURAL POLYPRTEIN HEPATITIS E VIRUS (STRAIN MEXICO) 219-246 349-376 PPOLN_HEVMY N-STRUCTURAL POLYPRTEIN HEPATITIS E VIRUS (STRAIN MYANMAR) 219-246 349-376 PPOLN_HEVPA NON-STRUCTURAL POLYPRTEIN HEPATITIS E VIRUS (STRAIN PAKISTAN) 218-245 348-375 PDPOL_HPBHE DNA POLYMERASE HERON HEPATITIS B VIRUS 5-39 PVMSA_HPBHE MAJOR SURFACE ANTIGEN PRECURSOR HERON HEPATITIS B VIRUS 294-328 PIE63_HSVII TRANSCRIPTIONAL REGULATOR IE63 HERPES SIMPLEX VIRUS 248-275 (TYPE 1/STRAIN 17) PIE68_HSVII IMMEDIATE-EARLY PROTEIN IE68 HERPES SIMPLEX VIRUS 40-67 (TYPE 1/STRAIN 17) PTEGU_HSVII LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS 667-694 1673-1710 (TYPE 1/STRAIN 17) PUL06_HSVII VIRION PROTEIN UL6 HERPES SIMPLEX VIRUS 586-613 (TYPE 1/STRAIN 17) PUL34_HSVII VIRION PROTEIN UL34 HERPES SIMPLEX VIRUS 116-143 (TYPE 1/STRAIN 17) PUL37_HSVII PROTEIN UL37 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 470-497 853-884 PUL42_HSVII DNA-BINDING PROTEIN UL42 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 231-258 PUL47_HSVII VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 488-515 PVGLC_HSVII GLYCOPROTEIN C PRECURSOR HERPEX SIMPLEX VIRUS (TYPE 1/STRAIN 17 469-510 PATI2_HSVIF ALPHA TRANS-IND FACTOR 77 KD PRO HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 308-335 PUL47_HSVIF VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 488-515 PATI2_HSVIF ALPHA TRANS-IND FACTOR 77 KD PRO HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 308-335 PVGLC_HSVIK GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS 469-510 (TYPE 1/STRAIN KOS) PVGLE_HSV2 GLYCOPROTEIN E PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 111-148 PTEGU_HSV6G LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/ 102-129 228-262 567-611 962-993 1098- 1661- 1884- STRAIN GS) 1118 1688 1911 PVGLH_HSV6G GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 6/ 62-89 360-403 STRAIN GS) PYRF1_HSV6G HYPOTHETICAL PROTEIN RF1 HERPES SIMPLEX VIRUS (TYPE 6/ 208-235 STRAIN GS) PYRF2_HSV6G HYPOTHETICAL PROTEIN RF2 HERPES SIMPLEX VIRUS (TYPE 6/ 223-257 268-299 STRAIN GS) PYRF3_HSV6G HYPOTHETICAL PROTEIN RF3 HERPES SIMPLEX VIRUS (TYPE 6/ 141-168 STRAIN GS) PYRF4_HSV6G HYPOTHETICAL PROTEIN RF4 HERPES SIMPLEX VIRUS (TYPE 6/ 404-441 STRAIN GS) PP100_HSV6U MAJOR ANTIGENIC STRUCTL PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/ 81-108 189-216 688-715 785-812 STRAIN UGANDA-1102) PUL87_HSV6U HYPOTHETICAL PROTEIN 5R HERPES SIMPLEX VIRUS (TYPE 6/ 536-563 729-768 STRAIN UGANDA-1102) PUL95_HSV6U HYPOTHETICAL PROTEIN 13R HERPES SIMPLEX VIRUS (TYPE 6/ 73-100 105-134 STRAIN UGANDA-1102) PVCAP_HSV6U MAJOR CAPSID PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/ 136-170 355-382 STRAIN UGANDA-1102) PVTER_HSV6U PROBABLE DNA PACKAGING PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/ 176-203 STRAIN UGANDA-1102) PTYSY_HSVAT THYMIDYLATE SYNTHASE HERPESVIRUS ATELES 116-143 PDPOL_HSVSA DNA POLYMERASE HERPESVIRUS SAIMIRI (STRAIN 11) 625-652 PDUT_HSVSA DEOXYU 5′-TRIPHOSPH NUCHYDROLASE HERPESVIRUS SAIMIRI (STRAIN 11) 179-213 PHELI_HSVSA PROBABLE HELICASE HERPESVIRUS SAIMIRI (STRAIN 11) 418-449 PIC18_HSVSA PROBABLE PROC &TRANSPORT PRO HERPESVIRUS SAIMIRI (STRAIN 11) 58-85 482-522 PIE68_HSVSA IMMEDIATE-EARLY PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 48-78 PKITH_HSVSA THYMIDINE KINASE HERPESVIRUS SAIMIRI (STRAIN 11) 340-386 PRIRI_HSVSA RIBONUC-DIPHOSPH REDUCT LARGE CHA HERPESVIRUS SAIMIRI (STRAIN 11) 324-351 PTEGU_HSVSA PROBABLE LARGE TEGUMENT PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 524-607 672-700 777-814 846-898 949-986 990- 1467- 2102- 1017 1497 2135 PTYSY_HSVSA THYMIDYLATE SYNTHASE HERPESVIRUS SAIMIRI (STRAIN 11) 120-147 PUL06_HSVSA VIRION GENE 43 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 15-42 302-358 368-402 PUL25_HSVSA VIRION GENE 19 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 34-61 204-231 362-389 PUL34_HSVSA GENE 67 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 208-235 PUL37_HSVSA GENE 63 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 31-65 685-737 PUL52_HSVSA PROB DNA REP GENE 56 PROTEIN HERPES VIRUS SAIMIRI (STRAIN 11) 130-157 PUL73_HSVSA HYPOTHETICAL GENE 53 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 9-36 PUL87_HSVSA HYPOTHETICAL GENE 24 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 582-609 PUL92_HSVSA HYPOTHETICAL GENE 31 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 92-122 PUNG_HSVSA URACIL-DNA GLYCOSYLASE HERPESVIRUS SAIMIRI (STRAIN 11) 135-176 PVCAP_HSVSA MAJOR CAPSID PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 769-799 PVG45_HSVSA HYPOTHETICAL GENE 45 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 138-165 PVG48_HSVSA HYPOTHETICAL GENE 48 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 360-394 PVG52_HSVSA HYPOTHETICAL GENE 52 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 47-74 PVGLH_HSVSA GLYCOPROTEIN H PRECURSOR HERPESVIRUS SAIMIRI (STRAIN 11) 388-415 VIMP_HSVSA INTEGRAL MEMBRANE PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 80-107 PVP23_HSVSA PROBABLE CAPSID PROTEIN VP23 HERPESVIRUS SAIMIRI (STRAIN 11) 2-29 PVP26_HSVSA CAPSID PROTEIN VP26 HERPESVIRUS SAIMIRI (STRAIN 11) 48-75 PVP40_HSVSA CAPSID PROTEIN P40 HERPESVIRUS SAIMIRI (STRAIN 11) 205-232 344-372 PVP75_HSVSA PROBABLE MEMBRANE ANTIGEN 75 HERPESVIRUS SAIMIRI (STRAIN 11) 181-208 929-997 PDNBI_HSVSA MAJOR DNA-BINDING PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 333-368 512-539 PCGH2_HSVSA CYCLIN HOMOLOG HERPESVIRUS SAIMIRI (STRAIN 11) 127-154 PYDHI_HSVS7 HYPOTH 24.1 KD IN DHFR 3′REGION HERPESVIRUS SAIMIRI (STRAIN 484-77) 161-188 PYDHI_HSVSC HYPOTH 28.7 KD IN DHFR 3′REGION HERPESVIRUS SAIMIRI 52-82 (SUBGROUP C/STRAIN 488) PYDH4_HSVSC HYPOTH 9.9 KD OM DHFR 3′REGION HERPESVIRUS SAIMIRI 53-83 (SUBGROUP C/STRAIN 488) PENV_MLVHO ENV POLYPROTEIN HOMULV MURINE LEUKEMIA VIRUS 510-540 PDPOL_MCMVA DNA POLYMERASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 753-780 PIC18_HCMVA PROB PROC &TRANSPORT PRO UL56 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 294-324 PIR05_HCMVA HYPOTHETICAL PROTEIN IRL5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 22-49 PIR12_HCMVA HYPOTHETICAL PROTEIN IRL12 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 74-162 PIR13_HCMVA HYPOTHETICAL PROTEIN IRL13 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 31-62 PRIRI_HCMVA RIBONUC-DIPHOSPH REDUCT LARGE CHA HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 622-649 PTEGU_HCMVA PROBABLE LARGE TEGUMENT PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 1251- 2229- 1281 2229 PUL08_HCMVA HYPOTHETICAL PROTEIN UL8 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 6-47 PUL13_HCMVA HYPOTHETICAL PROTEIN UL13 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 347-374 PUL16_HCMVA HYPOTHETICAL PROTEIN UL16 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 81-112 PUL20_HCMVA HYPOTH PRO UL20 PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 34-61 PUL31_HCMVA HYPOTHETICAL PROTEIN UL31 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 167-194 254-284 PUL35_HCMVA HYPOTHETICAL PROTEIN UL35 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 535-562 PUL47_HCMVA PROTEIN UL47 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 114-148 448-485 763-790 802-853 PUL50_HCMVA PROTEIN UL50 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 159-186 PUL59_HCMVA HYPOTHETICAL PROTEIN UL59 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 74-101 PUL70_HCMVA PROB DNA REP PROTEIN UL70 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 65-92 PUL73_HCMVA UL73 GLYCOPROTEIN PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 5-73 PUL74_HCMVA HYPOTHETICAL PROTEIN UL74 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 45-79 PUL93_HCMVA PROTEIN UL93 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 26-53 314-381 PUL95_HCMVA HYPOTHETICAL PROTEIN UL95 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 37-71 PULA4_HCMVA VIRION PROTEIN UL104 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 4-31 443-477 PULB9_HCMVA HYPOTHETICAL PROTEIN UL119 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 33-78 PULD0_HCMVA HYPOTHETICAL PROTEIN UL130 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 90-124 PUS09_HCMVA HYPOTHETICAL PROTEIN HXLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 20-47 PUS14_HCMVA HYPOTHETICAL PROTEIN HVLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 277-308 PUS18_HCMVA MEMBRANE PROTEIN HWLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 191-218 PVGLB_HCMVA GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 25-88 397-424 440-467 851-878 PVGLH_HCMVA GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 107-136 270-297 PVGLI_HCMVA IE GLYCOPROTEIN PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 47-111 PVTER_HCMVA PROBABLE DNA PACKAGING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 417-451 PDNBI_HCMVA MAJOR DNA-BINDING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 437-464 PV30K_HCMVE 30 KD MAJOR EARLY PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN 194-221 EISENHARDT) PVGLB_HCMVT GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 50-88 397-424 435-462 852-879 PVGLH_HCMVT GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 106-135 PENV_HVIA2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 544-592 630-682 790-825 TYPE 1 (ARV2/SF2 ISOLATE) PGAG_HVIA2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 91-118 TYPE 1 (ARV2/SF2 ISOLATE) PPOL_HVIA2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 218-245 620-661 TYPE 1 (ARV2/SF2 ISOLATE) PVPU_HVIA2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 3-31 TYPE 1 (ARV2/SF2 ISOLATE) PVPU_HVIB1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 5-48 TYPE 1 (BH10 AND HXB3 ISOLATES) PENV_HVIB1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 545-594 631-683 791-818 TYPE 1 (BH10 ISOLATE) PPOL_HVIB1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 230-257 637-673 TYPE 1 (BH10 ISOLATE) PPOL_HVIB5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 230-257 632-673 TYPE 1 (BH5 ISOLATE) PENV_HVIB8 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 540-589 626-678 786-813 TYPE 1 (BH8 ISOLATE) PVPU_HVIB8 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 21-48 TYPE 1 (BH8 ISOLATE) PENV_HVIBN ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 267-294 338-365 562-590 628-679 787-815 TYPE 1 (BRIAN ISOLATE) PVPU_HVIBN VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 22-49 TYPE 1 (BRIAN ISOLATE) PENV_HVIBR ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 550-599 636-688 796-823 TYPE 1 (BRU ISOLATE) PPOL_HVIBR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 230-257 632-673 TYPE 1 (BRU ISOLATE) PVPU_HVIBR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 5-48 TYPE 1 (BRU ISOLATE) PENV_HVIC4 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 397-424 557-606 643-695 803-835 TYPE 1 (CDC-451 ISOLATE) PVPU_HVIC4 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 3-30 TYPE 1 (CDC-451 ISOLATE) PENV_HVIEL ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 255-296 386-413 543-591 628-680 TYPE 1 (ELI ISOLATE) PNEF_HVIEL NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS 81-119 TYPE 1 (ELI ISOLATE) PPOL_HVIEL POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 217-244 624-660 TYPE 1 (ELI ISOLATE) PVPU_HVIEL VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 6-33 TYPE 1 (ELI ISOLATE) PENV_HVIH2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 545-594 631-683 791-818 TYPE 1 (HXB2 ISOLATE) PPOL_HVIH2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 218-245 620-661 921-951 TYPE 1 (HXB2 ISOLATE) PVPU_HVIH2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 5-48 TYPE 1 (HXB2 ISOLATE) PENV_HVIH3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 545-594 631-683 791-818 TYPE 1 (HXB3 ISOLATE) PENV_HVIJ3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 350-377 556-605 642-694 802-829 TYPE 1 (JH3 ISOLATE) PGAG_HVIJ3 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 91-118 TYPE 1 (JH3 ISOLATE) PVPU_HVIJ3 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 2-29 TYPE 1 (JH3 ISOLATE) PENV_HVIJR ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 336-363 622-675 783-811 TYPE 1 (JRCSF ISOLATE) PPOL_HVIJR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 222-249 624-665 TYPE 1 (JRCSF ISOLATE) PVPU_HVIJR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 22-49 TYPE 1 (JRCSF ISOLATE) PENV_HVIMA ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 547-595 633-707 794-826 TYPE 1 (MAL ISOLATE) PPOL_HVIMA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 217-244 476-510 619-660 TYPE 1 (MAL ISOLATE) PVPU_HVIMA VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 5-32 TYPE 1 (MAL ISOLATE) PENV_HVIMF ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 543-592 629-681 789-816 TYPE 1 (MN ISOLATE) PENV_HVIMN ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 343-370 567-595 632-684 791-819 TYPE 1 (MN ISOLATE) PGAG_HVIMN GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 87-118 TYPE 1 (MN ISOLATE) PPOL_HVIMN POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 221-248 623-664 TYPE 1 (NDK ISOLATE) PENV_HVIND ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 249-290 536-583 621-673 783-813 TYPE 1 (NDK ISOLATE) PNEF_HVIND NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS 81-119 TYPE 1 (NDK ISOLATE) PPOL_HVIND POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 217-244 624-660 TYPE 1 (NDK ISOLATE) PVPU_HVIND VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 6-33 TYPE 1 (NDK ISOLATE) PENV_HVIN5 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 326-360 TYPE 1 (NEW YORK-5 ISOLATE) PPOL_HVIN5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 218-245 625-661 TYPE 1 (NEW YORK-5 ISOLATE) PENV_HVIOY ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 544-593 630-704 789-820 TYPE 1 (OYI ISOLATE) PPOL_HVIOY POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 218-245 620-661 TYPE 1 (OYI ISOLATE) PENV_HVIPV ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 545-594 631-683 791-818 TYPE 1 (PV22 ISOLATE) PPOL_HVIPV POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 230-257 637-673 TYPE 1 (PV22 ISOLATE) PVPU_HVIPV VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 5-48 TYPE 1 (PV22 ISOLATE) PENV_HVIRH ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 280-307 351-378 554-602 640-692 800-832 TYPE 1 (RF/HAT ISOLATE) PPOL_HVIRH POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 217-244 619-660 TYPE 1 (RF/HAT ISOLATE) VIF_HVIRH VIRION INFECTIVIVTY FACTOR HUMAN IMMUNODEFICIENCY VIRUS 62-89 TYPE 1 (RF/HAT ISOLATE) PENV_HVISC ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 338-365 545-593 631-683 TYPE 1 (SC ISOLATE) PENV_HVISI ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 333-363 536-585 622-674 782-809 TYPE 1 (SF162 ISOLATE) PVPU_HVISI VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS 22-49 TYPE 1 (SF162 ISOLATE) PENV_HVIS3 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 541-589 627-679 787-815 TYPE 1 (SF162 ISOLATE) PENV_HVIKB ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 274-301 555-596 637-677 776-824 TYPE 1 (STRAIN KB I-GP32) PPOL_HVIU4 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 217-244 513-540 619-660 TYPE 1 (STRAIN UGANDAN/ISOLATE) PENV_HVIW1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 338-365 545-593 631-683 791-818 TYPE 1 (WMJ1 ISOLATE) PENV_HVIW2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 334-361 536-584 622-674 782-809 TYPE 1 (WMJ2 ISOLATE) PENV_HVIZ8 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 266-307 573-601 634-678 797-828 TYPE 1 (Z-84 ISOLATE) PENV_HVIZ2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 255-296 542-591 628-680 790-820 TYPE 1 (Z2/CDC-Z34 ISOLATE) PPOL_HVIZ2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 217-244 619-660 TYPE 1 (Z2/CDC-Z34 ISOLATE) PENV_HVIZ3 ENV POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 251-292 TYPE 1 (ZAIRE 3 ISOLATE) PENV_HVIZ6 ENV POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 256-297 545-593 630-682 792-822 TYPE 1 (ZAIRE 6 ISOLATE) PNEF_HVIZ6 NEGATIVE FACTOR HUMAN IMMUNDOEFICIENCY VIRUS 86-124 TYPE 1 (ZAIRE 6 ISOLATE) PENV_HVIZH ENV POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 545-594 627-666 791-823 TYPE 1 (ZAIRE HZ321 ISOLATE) PENV_HV2BE ENV POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 61-88 532-591 621-648 653-697 TYPE 2 (ISOLATE BEN) PGAG_HV2BE GAG POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 88-115 TYPE 2 (ISOLATE BEN) PPOL_HV2BE POL POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 491-582 TYPE 2 (ISOLATE BEN) PENV_HV2CA ENV POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 534-593 623-650 655-699 TYPE 2 (ISOLATE CAM2) PPOL_HV2CA POL POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 471-562 TYPE 2 (ISOLATE CAM2) PENV_HV2DI ENV POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 61-88 523-550 555-582 644-688 TYPE 2 (ISOLATE D194) PGAG_HV2DI GAG POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 88-115 TYPE 2 (ISOLATE D194) PPOL_HV2DI POL POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 509-600 TYPE 2 (ISOLATE D194) PPOL_HV2D2 POL POLYPROTEIN HUMAN IMMUNDOEFICIENCY VIRUS 491-568 TYPE 2 (ISOLATE D205,7) PENV_HV2G1 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 60-87 524-551 556-583 613-640 645-693 TYPE 2 (ISOLATE GHANA-1) PPOL_HV2G1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 471-562 TYPE 2 (ISOLATE GHANA-1) PENV_HV2NZ ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 61-88 524-551 556-583 613-640 662-689 TYPE 2 (ISOLATE NIH-Z) PGAG_HV2NZ GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 88-115 TYPE 2 (ISOLATE NIH-Z) PPOL_HV2NZ POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 471-529 TYPE 2 (ISOLATE NIH-Z) PENV_HV2RO ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 58-85 533-592 622-698 TYPE 2 (ISOLATE ROD) PPOL_HV2RO POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 472-563 TYPE 2 (ISOLATE ROD) PENV_HV2SB ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 557-584 614-673 TYPE 2 (ISOLATE SBLISY) PPOL_HV2SB POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 473-562 TYPE 2 (ISOLATE SBLISY) PENV_HV2ST ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 442-476 527-554 559-586 648-692 TYPE 2 (ISOLATE ST) PGAG_HV2ST GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 88-115 TYPE 2 (ISOLATE ST) PPOL_HV2ST POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 491-582 TYPE 2 (ISOLATE ST) PENV_HV2S2 ENV POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS 442-476 527-554 559-586 648-682 TYPE 2 (ISOLATE ST/24-IC#2) PVE4_HPV11 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 11 81-108 PVE5A_HPV11 PROBABLE E5A PROTEIN HUMAN PAPILLOMA VIRUS TYPE 11 30-60 PVE2_HPV13 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 13 157-184 334-361 PVE2_HPV16 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 16 61-105 312-342 PVE2_HPV16 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 16 66-93 PVE1_HPV18 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 18 60-87 PVE2_HPV18 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 18 313-340 PVE4_HPV18 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 18 59-86 PVE6_HPV18 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 18 75-102 VL1_HPV18 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 18 183-210 PVE2_HPV1A E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 1A 159-186 VL2_HPV1A PROBABLE L2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 1A 407-445 PVE1_HPV2A E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 2A 21-48 PVE2_HPV2A E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 2A 159-193 PVE4_HPV31 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 31 75-102 PVE6_HPV31 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 31 69-96 PVE1_HPV33 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 33 180-207 PVE2_HPV33 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 33 304-331 VL1_HPV33 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 33 19-46 PVE2_HPV35 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 35 158-192 327-354 PVE5_HPV35 PROBABLE E5 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 35 27-54 PVE1_HPV39 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 39 103-130 PVE2_HPV39 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 39 7-34 323-357 PVE6_HPV39 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 39 71-102 PVE1_HPV41 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 41 55-89 PVE4_HPV41 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 41 63-97 PVE6_HPV41 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 41 119-146 VL1_HPV41 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 41 345-372 VL2_HPV41 PROBABLE L2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 41 415-442 PVE1_HPV42 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 42 25-59 PVE6_HPV45 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 45 75-102 PVE1_HPV47 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 47 146-173 PVE2_HPV47 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 47 17-51 148-175 276-303 PVE2_HPV05 PROBABLE E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5 17-51 PVE4_HPV05 PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5 202-229 PVE2_HPV51 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 51 137-184 PVE6_HPV51 E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 51 72-99 VL1_HPV51 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 51 19-46 PVE1_HPV57 E1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 57 21-48 PVE2_HPV57 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 57 166-193 PVE2_HPV58 E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 58 2-36 309-336 VL1_HPV58 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 58 45-72 PVE2_HPV5B PROBABLE E2 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5B 17-51 PVE4_HPV5B PROBABLE E4 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5B 202-229 PVE5_HPV5B PROBABLE E5 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 5B 11-41 PVE5A_HPV6B PROBABLE E5A PROTEIN HUMAN PAPILLOMA VIRUS TYPE 6B 30-60 PVE5A_HPV6C PROBABLE E5A PROTEIN HUMAN PAPILLOMA VIRUS TYPE 6C 30-60 VL1_HPV08 PROBABLE L1 PROTEIN HUMAN PAPILLOMA VIRUS TYPE 8 354-392 PVE6_HPVME E6 PROTEIN HUMAN PAPILLOMA VIRUS TYPE ME180 71-102 PRRPP_P11HB RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS 84-111 234-261 375-416 (STRAIN C35) PNCAP_P11HC NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS 377-404 455-482 (STRAIN C39) PRRPP_P11HC RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS 84-111 234-261 375-416 (STRAIN C39) PVGLP_P11HC FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 1 VIRUS 147-174 210-266 (STRAIN C39) PRRPP_P11HE RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS 84-111 244-271 375-416 STRAIN CI-14/83) PVNSC_P11HB NONSTRUCTURAL PROTEIN C HUMAN PABAINPLIENZA 1 VIRUS 41-75 (STRAIN CI-14/83) PRRPP_P11HD RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 1 VIRUS 84-111 232-262 375-416 (STRAIN CI-5/73) PHEMA_P11HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 1 VIRUS 79-110 366-393 (STRAIN WASHINGTON/1957) PNCAP_P11HW NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS 377-404 444-488 (STRAIN WASHINGTON/1957) PRRPP_P12H RHA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS 167-194 222-256 PVGLF_P12H FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS 90-117 141-175 238-266 483-528 PVGLF_P12HG FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS 90-117 141-175 238-266 483-528 (STRAIN GREER) PRRPP_P12HG RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS 322-349 1564- 1687- 1901- (STRAIN TOSHIBA) 1598 1721 1946 PRRPP_P12HT RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS 167-194 222-256 (STRAIN TOSHIBA) PVGLF_PI2HT FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS 90-117 141-175 238-266 483-528 (STRAIN TOSHIBA) PVMAT_P12HT MATRIX PROTEIN HUMAN PARAINFLUENZA 2 VIRUS 96-123 (STRAIN TOSHIBA) PHEMA_P13HA HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS 27-61 (STRAIN AUS/124854/114) PNCAP_P13H4 NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 3 VIRUS 376-403 (STRAIN NIH 47885) PHEMA_P13H4 HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS 27-61 (STRAIN NIH 47885) PRRPL_P13H4 RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS 52-86 136-163 608-638 1081- 1994- 2115- (STRAIN NIH 47885) 1233 2036 2142 PRRPP_P13H4 RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS 144-144 269-299 (STRAIN NIH 47885) PVGLF_P13H4 FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 3 VIRUS 115-182 207-241 457-497 (STRAIN NIH 47885) PVMAT_PI3H4 MATRIX PROTEIN HUMAN PARAINFLUENZA 3 VIRUS 201-231 (STRAIN NIH 47885) PVNSC_PI3H4 NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA 3 VIRUS 58-99 (STRAIN NIH 47885) PHEMA_PI3HV HEMAGOLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS 27-61 (STRAIN TEX/12677183) PHEMA_PI2HT HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS 27-76 (STRAIN TEX/545/80) PHEMA_PI3HU HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS 23-70 (STRAIN TEX/9305/82) PHEMA_PI3HX HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZR 3 VIRUS 27-61 (STRAIN WASH/1511/73) PHEMA_PI3HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS 27-61 (STRAIN WASH/641/79) PRRPP_PI4HA RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4A VIRUS 4-38 (STRAIN TOSHIBA) PVV_PI4HA V PROTEIN HUMAN PARAINFLUENZA 4A VIRUS 4-38 (STRAIN TOSHIBA) PRRPP_HESV RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS 99-141 PNCAP_HRSVA NUCLEOCAPSID PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS 4-31 (STRAIN A2) PRRPL_HRSVA RNA POLYMERASE BETA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS 103-192 210-237 667-694 788-815 1007- 1138- 1453- 1776- 2062- (STRAIN A2) 1034 1165 1480 1803 2089 PRRPP_HRSVA RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS 99-141 (STRAIN A2) PVGLF_HRSVA FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS 38-65 154-202 213-243 488-518 (STRAIN A2) PVMA2_HRSVA MATRIX GLYCOPROTEIN M2 HUMAN RESPIRATORY SYNCYTIAL VIRUS 124-151 (STRAIN A2) PVMAT_HESVA MATRIX PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS 219-246 (STRAIN A2) PVGLG_HRSV4 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS 66-107 (STRAIN RSB5857) PVGLG_HRSV5 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS 243-273 (STRAIN RSB6190) PVGLF_HRSVR FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS 38-65 154-202 213-243 442-471 488-518 (STRAIN RSS-2) PRRPP_HRSVL RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS 99-141 (SUBGROUP A/STRAIN LONG) PVGLF_HRSVL FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS 38-65 154-202 216-243 444-471 488-515 (SUBGROUP A/STRAIN LONG) PNCAP_HRSVI NUCLEOCAPSID PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS 4-31 74-108 112-141 (SUBGROUP B/STRAIN 18537) PRRPP_HRSVI RNA POLYMERASE ALPHA SUBUNIT HUMAN RESPIRATORY SYNCYI1AL VIRUS 99-141 (SUBGROUP B/STRAIN 18537) PVGLF_HRSVI FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS 38-65 154-203 442-471 488-515 (SUBGROUP B/STRAIN 18537) PVGLG_HASVI MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS 63-93 (SUBGROUP B/STRAIN 18537) PVGLG_HRSV8 MAJOR SURFACE GLYCOPROTEIN G HUMAN RESPIRATORY SYNCYTIAL VIRUS 66-93 (SUBGROUP B/STRAIN 8/60) PENV_HTL1C ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS 342-376 TYPE I (CARIBBEAN ISOLATE) PPOL_HTLIC POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS 674-712 TYPE I (CARIBBEAN ISOLATE) PENV_HTLIM ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS 342-376 TYPE I (ISOLATE MT-2) PENV_HTLIA ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS 342-376 TYPE I (STRAIN ATK) PPOL_HTLIA POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS 674-712 TYPE I (STRAIN ATK) PENV_HTLV2 ENV POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE II 336-370 PDPOL_HSVII DNA POLYMERASE ICTALURID HERPES VIRUS I 328-366 710-737 PKR74_HSVII GENE 74 PROTEIN KINASE ICTALURID HERPES VIRUS I 491-518 PVG07_HSVII HYPOTH GENE 7 MEMB PRO ICTALURID HERPES VIRUS I 71-98 PVGI7_HSVII HYPOTHETICAL GENE 17 PROTEIN ICTALURID HERPES VIRUS I 177-204 PVGI8_HSVII HYPOTHETICAL GENE 18 PROTEIN ICTALURID HERPES VIRUS I 174-208 PVG22_HSVII HYPOTHETICAL GENE 22 PROTEIN ICTALURID HERPES VIRUS I 373-400 581-622 668-705 766-824 PVG24_HSVII HYPOTHETICAL GENE 24 PROTEIN ICTALURID HERPES VIRUS I 31-58 PVG28_HSVII HYPOTHETICAL GENE 28 PROTEIN ICTALURID HERPES VIRUS I 253-290 497-528 PVG34_HSVII HYPOTHETICAL GENE 34 PROTEIN ICTALURID HERPES VIRUS I 95-122 PVG37_HSVII HYPOTHETICAL GENE 37 PROTEIN ICTALURID HERPES VIRUS I 442-469 PVG39_HSVII HYPOTHETICAL GENE 39 PROTEIN ICTALURID HERPES VIRUS I 651-678 1088- 1115 PVG46_HSVII PROBABLE MAJOR GLYCOPROTEIN ICTALURID HERPES VIRUS I 142-169 346-373 897-924 973- 1007 PVG51_HSVII HYPOTH GENE 51 MEMBRANE PROTEIN ICTALURID HERPES VIRUS I 34-61 87-114 PVG56_HSVII HYPOTHETICAL GENE 56 PROTEIN ICTALURID HERPES VIRUS I 582-609 PVG63_HSVII HYPOTHETICAL GENE 63 PROTEIN ICTALURID HERPES VIRUS I 550-584 PVG64_HSVII HYPOTHETICAL GENE 64 PROTEIN ICTALURID HERPES VIRUS I 477-504 PVG65_HSVII HYPOTHETICAL GENE 65 PROTEIN ICTALURID HERPES VIRUS I 1213- 1251 PVG66_HSVII HYPOTHETICAL GENE 66 PROTEIN ICTALURID HERPES VIRUS I 362-406 PVG67_HSVII HYPOTHETICAL GENE 67 PROTEIN ICTALURID HERPES VIRUS I 1342-1369 PVG68_HSVII HYPOTHETICAL GENE 68 PROTEIN ICTALURID HERPES VIRUS I 261-288 PVG72_HSVII HYPOTHETICAL GENE 72 PROTEIN ICTALURID HERPES VIRUS I 447-481 PVG75_HSVII HYPOTHETICAL GENE 75 PROTEIN ICTALURID HERPES VIRUS I 388-422 PVG76_HSVII HYPOTHETICAL GENE 76 PROTEIN ICTALURID HERPES VIRUS I 200-227 PVTER_HSVII PROBABLE DNA PACKAGING PROTEIN ICTALURID HERPES VIRUS I 710-737 PHEMA_IAHSW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN) 29-56 194-221 388-457 A/EQUINE/SWITZERLAND/137/72 PHEMA_IAAIC HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/AICHI/2/68) 387-453 PVNSI_IAALA NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77) 171-198 PVNUC_IAANA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANAS 378-405 ACUTA/PRIMORJE/695/76) PRRP2_IAANN RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 ANN ARBOR/6/60) PVNSI_IAANN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 171-198 PVNUC_IAANN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 378-405 PHEMA_IABAN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79) 24-51 371-437 PNRAM_IABDA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/BLACK 47-81 DUCK/AUSTRALIA/702/78) PVNUC_IABRA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78) 378-405 PHEMA_IABUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 BUDGERIGAR/HOKKAIDO/1/77) PRRP3_IABUD RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/ 537-567 BUDGERIGAR/HOKKAIDO/1/77) PVNUC_IABUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 BUDGERIGAR/HOKKAIDO/1/77) PVNUC_IACAL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78) 378-405 PNRAM_IACAO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 33-64 CAMEL/MONGOLIA/82) PHEMA_IACAO HEMAGGLUTININ INFLUENZA A VIRUS (STRAIN A/ 9-36 CAMEL/MONGOLIA/82) PHEMA_IACKA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 CHICKEN/ALABAMA/1/75) PHEMA_IACKG HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 31-58 382-441 494-528 CHICKEN/GERMANY/N/49) PVNSI_IACKG NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 CHICKEN/GERMANY/N/49) PVNUC_IACKG NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 CHICKEN/GERMANY/N/49) PVNSI_IACKG NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 168-195 CHICKEN/JAPAN/24) PHEMA_IACKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 396-426 CHICKEN/PENNSYLVANIA/1/83) PVNUC_IACKP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 CHICKEN/PENNSYLVANIA/1/83) PHEMA_IACKQ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 396-426 CHICKEN/PENNSYLVANIA/1370/83) PHEMA_IACKV HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 119-146 384-443 CHICKEN/VICTORIA/1/85) PNRAM_IACH1 NEURAMINDASE INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 16-43 50-91 PRRP3_IACH1 RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 331-358 PVNSI_IACH1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 171-198 PHEMA_IADA1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 DUCK/ALBERTA/28/76) PNRAM_IADA1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 51-81 DUCK/ALBERTA/28/76) PHEMA_IADA4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-59 418-478 DUCK/ALBERTA/35/76) PHEMA_IADA2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 423-453 499-543 DUCK/ALBERTA/60/76) PVNSI_IADA2 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 DUCK/ALBERTA/60/76) PHEMA_IADA3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 387-453 DUCK/ALBERTA/78/76) PVNUC_IADAU NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/AUSTRALIA/749/80) PVNUC_IADBE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/BEIJING/1/78) PHEMA_IADCZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 DUCK/CZECHOSLOVAKIA/56) PVNCU_IADCZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/CZECHOSLOVAKIA/56) PVNUC_IADEI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/ENGLAND/1/) PHEMA_IADEI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 21-55 402-453 506-533 DUCK/ENGLAND/1/56) PVNUC_IADE2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/ENGLAND/1/62) PNRAM_IADGE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 21-48 DUCK/GERMANY/49) PHEMA_IADH7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/10/85) PHEMA_IADH5 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/21/82) PHEMA_IADH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/33/80) PHEMA_IADH1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/5/77) PHEMA_IADH4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/7/82) PHEMA_IADH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/8/80) PRRP2_IADG2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 DUCK/HOKKAIDO/8/80) PHEMA_IADH6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 DUCK/HOKKAIDO/9/85) PVNUC_IADHK NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/HONG KONG/7/75) PHEMA_IADIR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 415-445 DUCK/IRELAND/113/83) PHEMA_IADMA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 31-58 DUCK/MANITOBA/1/53) PVNUC_IADMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/MANITOBA/1/53) PHEMA_IADM2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 21-56 DUCK/MEMPHIS/546/76) PHEMA_IADM2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 387-453 DUCK/MEMPHIS/928/74) PVNUC_IADM2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/MEMPHIS/928/74) PHEMA_IADNY HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 21-55 DUCK/NEW YORK/12/78) PHEMA_IADNZ HEMAGGLUTINON PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 DUCK/NEW ZEALAND/31/76) PVNUC_IADNZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/NEW ZEALAND/31/76) PHEMA_IADUI HEMAGOLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 21-55 DUCK/UKRAINE/1/60) PHEMA_IADU3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 387-453 DUCK/UKRAINE/1/63) PVNUC_IADU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 DUCK/UKRAINE/2/60) PVNUC_IAEN5 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55) 378-405 PHEMA_IAEN7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77) 40-67 387-453 PHEMA_IAEN6 HEMAGOLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ENGLAND/878/69) 24-51 PHEMA_IAHAL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/ALGIERAS/72) PHEMA_IAHCD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/C.DETROIT/1/64) PHEMA_IAHC6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/CAMBRIDGE/1/63) PHEMA_IAHC7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/CAMBRIDGE/1/73) PNRAM_IAHCO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/74) 197-224 386-413 PHEMA_IAHDE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/DETROIT/1/64) PHEMA_IARFO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/FONTAINEBLEAU/76) PVNUC_IAHJ1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 EQUINE/JILLIN/1/89) PNRAM_IAHK1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 5-44 46-76 364-400 EQUINE/KENTUCKY/1/81) PHEMA_IAHK7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/KENTUCKY/1/87) PHEMA_IAHK6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/KENTUCKY/2/86) PHEMA_IAHLE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/LEXINGTON/1/66) PHEMA_IAHLO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/LONDON/1416/73) PRRP2_IAHLO RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 EQUINE/LONDON/1416/73) PVNUC_IAHLO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 EQUINE/LONDON/1416/73) PHEMA_IAHMI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/MIAMI/1/63) PHEMA_IAHNM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 EQUINE/MIAMI/I/63) PHEMA_IAHNM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/NEW MARKET/1/17) PHEMA_IAHNM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/NEW MARKET/76) PHEMA_IAHPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/PRAGUE/1/56) PRRP3_IAHPR RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/ 331-361 480-507 EQUINE/PRAGUE/1/56) PVNUC_IAHPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 EQUINE/PRAGUE/1/56) PHEMA_IAHRO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/ROMANIA/80) PHEMA_IAHSA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/SANTIAGO/1/185) PHEMA_IAHSP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 29-56 194-221 388-457 EQUINE/SAO PAULO/1/76) PHEMA_IAHTE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-432 EQUINE/TENNESSEE/5/86) PREP2_IAHTE RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 EQUINE/TENNESSEE/5/86) PVNUC_IAHTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 EQUINE/TENNESSEE/S/86) PHEMA_IAHUR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-455 EQUINE/TOKYO/71) PHEMA_IAHUR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 386-452 EQUINE/URUGUAY/1/63) PVNSI_IAFOM NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 FORT MONMOUTH/1/47) PVNUC_IAFOM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 FORT MONMOUTH/1/47) PVNSI_ZAFOW NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 FORT WARREN/1/50) PVNUC_IAFOW NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 FORT WARREN/1/50) PVNUC_IAFPD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 FOWL PLAGUE VIRUS/DOBSON/DUTCH/27) PHEMA_IAFPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 177-221 384-442 FOWL PLAGUE VIRUS/ROSTOCK/34) PRRP2_IAFPR RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 FOWL PLAGUE VIRUS/ROSTOCK/34) PVNUC_IAFPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 FOWL PLAGUE VIRUS/ROSTOCK/34) PNRAM_IAFPW NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 10-48 52-80 197-224 FOWL PLAGUE VIRUS/WEYBRIDGE) PHEMA_IAGRE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 GREY TEAL/AUSTRALIA/2/79) PVNUC_IAGRE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GREY TEAL/AUSTRALIA/2/79) PHEMA_IAGUA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 504-531 GULL/ASTRAKHAN/227/84) PVNUC_IAGUA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/ASTRAKHAN/227/84) PVNUC_IAGUA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/MARYLAND/1815/79) PVNUC_IAGU3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/MARYLAND/1824/78) PVNUC_IAGU1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/MARYLAND/5/77) PHEMA_IAGU2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 505-532 GULL/MARYLAND/704/77) PRRP2_IAGU2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 GULL/MARYLAND/704/77) PVNUC_IAGU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/MARYLAND/704/77) PVNUC_IAGUN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/MASSACHUSETTS/26/80) PVNUC_IAGUN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 GULL/MINNESOTA/945/80) PHEMA_IAHAR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/HARBIN/1/88) 29-56 PVNUC_IAHIC NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HICKOX/40) 378-405 PVNUC_IAHO1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68) 378-405 PVNUC_IAHO2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83) 378-405 PHEMA_IAJAP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57) 196-233 PHEMA_IAKIE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 29-56 425-478 PNRAM_IAKIE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 50-81 PVNUC_IAKIE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 378-405 PRRPI_IAKOR RNA-DIRECTED RNA POT SUB P1 INFLUENZA A VIRUS (STRAIN 575-602 A/KOREA/426/68) PRRP2_IAKOR RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN 119-146 A/KOREA/426/68) PRRP2_IALE2 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN 119-146 A/LENINGRAD/134/17/57) PRRP2_IALE1 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN 119-146 A/LENINGRAD/134/57) PVNSI_IALE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN 171-198 A/LENINGRAD/134/57) PHEMA_IALEN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 29-56 425-478 A/LENINGRAD/54/1) PNRAM_IALEN NEURAMINIDASE INFLUENZA A VIRUS (STRAIN 50-81 A/LENINGRAD/54/1) PVNUC_IALEN NUCLEOPROTEIN INFLUENZA A VIRUST (STRAIN 378-405 A/LENINGRAD/54/1) PVNSI_IAMA6 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 MALLARD/ALBERTA/88/76) PHEMA_IAMAA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 380-450 MALLARD/ASTRAKHAN/244/82) PVNUC_IAMAA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 MALLARD/ASTRAKHAN/244/82) PHEMA_IAMAB HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 385-455 MALLARD/ASTRAKHAN/263/82) PRRP2_IAMA4 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 MALLARD/NEW YORK/6750/78) PVNUC_IAMAN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 MALLARD/NEW YORK/6750/78) PHEMA_IAMAO HEMAGGLUITININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 387-453 MALLARD/NEW YORK/6874/78) PHEMA_LAMEI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71) 40-67 387-453 PHRAM_IAME1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/ 16-43 50-81 71H-A/BELLAMY/42N) PHEMA_IAME2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/10/72) 40-67 387-452 PHEMA_IAME6 HEMAUGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86) 24-51 371-437 PHEMA_IAMIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 31-58 382-441 PVNUC_IAMIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 378-405 PVNUC_IANEI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NEW JERSEY/8/76) 387-453 PHEMA_IANEI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/NT/60/68) 387-453 PRRP2_IANT6 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/NT/60/68) 119-146 PYNUC_IANT6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NT/60/68) 378-405 PYNUC_IAOHI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/OHIO/4/83) 378-405 PNRAM_IAPAR NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 16-43 50-81 PARROT/ULSTER/73) PYNUC_IAPAR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 PARROT/ULSTER/73) PHEMA_IAPIL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 505-534 PILOT WHALE/MAINE/328/84) PRRP2_IAPI0 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 PINTAIL/ALBERTA/119/79) PYNSI_IAPI1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 PINTAIL/ALBERTA/121/79) PYNSI_IAPI3 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 PINTAIL/ALBERTA/358/79) PHEMA_IAPUE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 29-56 425-478 PNRAM_IAPUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 16-43 PRRP2_IAPUE RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 119-146 PVNUC_IAPUE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 378-405 PHEMA_IAQU7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/QU/7/70) 24-51 PHEMA_IARUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 RUDDY TURNSTONE/NEW JERSEY/47/85) PRRP2_IARUD RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 RUDDY TURNSTONE/NEW JERSEY/47/85) PVNUC_IARUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 RUDDY TURNSTONE/NEW JERSEY/47/85) PNRAM_IARUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/ 49-88 RUDDY TURNSTONE/NEW JERSEY/60/83) PVNUC_IASEO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 SEAL/MASSACHUSETTS/1/80) PHEMA_IASE2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 381-451 SEAL/MASSACHUSETTS/133/82) PHEMA_IASE2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 28-56 160-187 506-547 SHEARWATER/AUSTRALIA/72) PVNUC_IASH2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 SHEARWATER/AUSTRALIA/72) PRRP2_IASIN RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 119-146 PVNUC_IASIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/SINGAPORE/1/57) PHEMA_IASTA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 119-146 384-443 STARLING/VICTORIA/5156/85) PVNUC_IAZ29 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/29/37) 378-405 PVNUC_IAZ4I NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/41/49) 378-405 PVNUC_IAZCA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 378-405 CAMBRIDGE/1/35) IHEMA_IAZCO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/ 40-67 387-453 COLORADO/1/77) PVNUC_IAZDA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 378-405 DANDONG/9/83) PVNUC_IAZGE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 378-405 GERMANY/2/81) PHEMA_IAZH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/ 371-437 HONG KONG/126/82) PRRP2_IAZH3 RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SWINE/ 119-146 HONG KONG/126/82) PVNUC_IAZH3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 378-405 HONG KONG/126/82) PVNUC_IAZH4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 378-405 HONG KONG/127/82) PVNUC_IAZHI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 378-405 HONG KONG/6/76) PHEMA_IAZH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 371-437 SWINE/HONG KONG/81/78) PRRP2_IAZUI RNA-DIRECTED RHA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 SWINE/HONG KONG/81/78) PHEMA_IAZIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 418-478 506-547 SWINE/INDIANA/1726/88) PRRP2_IAZII RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 119-146 PVNUC_IAZII NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 378-405 PVNUC_IAZI2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31) 378-405 PVNUC_IAZI3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46) 378-405 PVNUC_IAZiS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/141/81) 378-405 PVNUC_IAZJ2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/2/79) 378-405 PVNUC_IAZJI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/437/76) 378-405 PVNUC_IAZI4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89) 378-405 PYNUC_IAZJA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42) 378-405 PVNUC_IAZMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54) 378-405 PVNUC_IAZNE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 SWINE/NETHERLANDS/12/85) PHEMA_IAZNJ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ 418-478 506-547 SWINE/NEW JERSEY/11/76) PVNUC_IAZOH NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35) 378-405 PVNUC_IAZON NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81) 378-405 PRRP3_IAZTE RNA-DIRECTED RNA POL SUB P3 INFLUENZA A VIRUS (STRAIN A/ 487-514 SWINE/TENNESSEE/24/77) PVNUC_IAZTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 SWINE/TENNESSEE/24/77) PRRP2_IAZTF RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/ 119-146 SWINE/TENNESSEE/26/77) PHEMA_IAZUK HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 387-453 A/SWINE/UKKEL/1/84) PVNUC_IAZW1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/SWINE/WISCONSIN/1/57) PVNUC_IAZW2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/SWINE/WISCONSIN/1/61) PHEMA_IATA1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 29-56 A/TAIWAN/1/86) PVNUC_IATE1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN 378-405 A/TEAL/ICELAND/29/80) PHEMA_IATRA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN 21-55 A/TERN/AUSTRALIA/G70C/75) PNRAM_IATRA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN 49-82 A/TERN/AUSTRALIA/G70C/75) PVNUC_IATRS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 TERN/SOUTH AFRICA/61) PVNSI_IATRT NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ 171-198 TERN/TURKMENIA/18/72) PVNUC_IATRT NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ 378-405 TERN/TURKMENIA/18/72) PVNUC_IATX7 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77) 378-405 PVNSI_IATKB NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN 171-198 A/TURKEY BETHLEHEM-GLILIT/1492-B/82) PVNSI_IATKC NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63) 171-198 PHEMA_IATKI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 415-445 IRELAND/1378/83) PVNUC_IATKN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/ 378-405 MINNESOTA/1661/81) PHEMA_IATKM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 381-451 MINNESOTA/833/80) PRRP2_IATKM RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/TURKEY/ 119-146 MINNESOTA/833/80) PHEMA_IATKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 424-454 493-539 ONTARIO/6118/68) PHEMA_IATKO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 507-534 ONTARIO/7732/66) PYNUC_IATKO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/ 378-405 ONTARIO/7732/66) PHEMA_IATEK HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 32-62 194-221 381-422 OREGON/71) PVNS2_IATKR NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/TURKEY/ 87-114 OREGON/71) PHEMA_IATIC HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 419-449 500-536 WISCONSIN/1/66) PHEMA_IAUDO HEMAGOLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 40-67 387-453 PVNSI_IAUDO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN 171-198 A/UDORN/307/72) PVNUC_IAUDO NUCLEOPROTRIN INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 378-405 PHEMA_IAUSS HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 29-56 425-478 PNRAM_IAUSS NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 50-81 PVNSI_IAUSS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 171-198 PVNUC_IAUSS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 378-405 PHEMA_IAVI7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 41-68 388-454 PRRP2_IAVI7 RNA-DIRECTRD RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 119-146 327-354 PVNUC_IAVI6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68) 378-405 PNRAM_IAWHM NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84) 49-88 PVNUC_IAWHN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84) 378-405 PVNUC_IAWHP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/ 378-405 PACIFIC OCEAN/19/76) PHEMA_IAWIL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 424-477 PNRAM_IAWIL NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 16-43 PRRP2_IAWIL RNA-DIRECTED RNA POL SUB P2 INFLUENZA A VIRUS (STRAIN AAVILSON-SMITH/33) 119-146 PVNUC_IAWIL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 378-405 PVNUC_IAWIS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/18) 378-405 PHEMA_IAXIA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN AIXIANFENG/3/89) 29-56 PRRP2_INBAC RNA-DIRECTED RNA POL SUB P2 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/ 157-194 1/66 [COLD-ADAPTED]) PRRP3_INBAC RNA-DIRECTED RNA POL SUB P3 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/ 2-33 472-509 1/66 [COLD-ADAPTED]) PRRP2_INBAD RNA-DIRECTED RNA POL SUB P2 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/ 164-194 1/66 (WILD-TYPE) PRRP3_INBAD RNA-DIRECTED RNA POL SUB P3 INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/ 2-33 472-509 1/66 (WILD-TYPE) PHEMA_INEBE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87) 400-431 439-483 PHEMA_INBBO HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BONN/43) 390-421 429-473 PHEMA_INBEN HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82) 398-429 437-481 PHEMA_INBHK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73) 391-418 429-473 PHEMA_INBLE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/LEE/40) 399-430 438-482 PNRAM_INBLE NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/LEE/40) 4-35 PVNS2_INBLE NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/LEE/40) 51-78 PHEMA_INBMD HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 389-420 428-472 PHEMA_INBME HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86) 393-424 432-476 PHEMA_INBOR HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/OREGON/5/80) 398-429 437-481 PVNSI_INBPA NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/PA/79) 171-198 PHEMA_INESI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 398-429 437-481 PRRP2_INBSI RNA-DIRECTED RNA POL SUB P2 INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 157-194 PHEMA_INBUS HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/USSR/100/83) 391-422 430-474 PHEMA_INBVK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87) 400-431 439-483 PHEMA_INBVI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85) 393-424 432-476 PVNS2_INBYA NONSTRUCTURAL PROTEIN N52 INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73) 51-78 PRRP3_INCBE RNA-DIRECTED RNA POL SUB P3 INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85) 509-536 PHEMA_INCCA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 495-571 PVNUC_INCCA NUCLEOPROTEIN INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 99-126 416-443 451-478 PHEMA_INCEN HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83) 483-559 PHEMA_INCGL HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/ 483-559 GREAT LAKES/1167/54) PHEMA_INCHY HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83) 482-558 PRRP3_INCJJ RNA-DIRECTED RNA POL SUB P3 INFLUENZA C VIRUS (STRAIN C/JJ/50) 509-536 PVMAT_INCJJ MATRIX (M) PROTEIN INFLUENZA C VIRUS (STRAIN C/JJ/50) 151-185 PVNS2_INCJJ NONSTRUCTURAL PROTEIN NS2 INFLUENZA C VIRUS (STRAIN C/JJ/50) 71-98 PHEMA_INCJH HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/ 496-572 JOHANNESBURG/1/66) PHEMA_INCKY HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/HYOGO/1/82) 482-558 PHEMA_INCMI HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80) 482-558 PHEMA_INCNA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/NARA/82) 482-558 PHEMA_INCP1 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81) 483-559 PHEMA_INCP2 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81) 483-559 PHEMA_INCP3 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82) 483-559 PHEMA_INCTA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47) 483-559 PHEMA_INCYA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81) 483-559 PENV_MLVKI ENV POLYPROTEIN KIRSTEN MURINE LEUKEMIA VIRUS 41-80 PVGLB_HSVMD GLYCOPROTEIN B PRECURSOR MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B) 93-120 352-379 PENV_MCFF ENV POLYPROTEIN MINK CELL FOCUS-FORMING 473-512 MURINE LEUKEMIA VIRUS PENV_MCFF3 ENV POLYPROTEIN MINK CELL FOCUS-FORMING MURINE 488-515 LEUKEMIA VIRUS (ISOLATE CI-3) PENV_MLVMO ENV POLYPROTEIN MOLONEY MURINE LEUKEMIA VIRUS 502-543 PDNBI_MCMVS MAJOR DNA-BINDING PROTEIN MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 584-618 PICI8_MCMVS PROB PROC &TRANSPORT PRO MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 661-691 PVGLB_MCMVS GLYCOPROTEIN B PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 381-408 441-475 VIEI_MCMVS IMMEDIATE-EAZLY PROTEIN I MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 261-288 PVE2_PCPVI E2 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE I 267-294 327-361 PVES_PCPVI PROBABLE E5 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE I 35-62 PENV_MLVRD ENV POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 497-538 PPOL_MLVRD POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 716-743 805-832 PENV_MLVRK ENV POLYPROTEIN RADION MURINE LEUKEMIA VIRUS 497-538 (STRAIN KAPLAN) PPOL_MLVRK POL POLYPROTEIN RADION MURINE LEUKEMIA VIRUS 101-128 190-217 (STRAIN KAPLAN) PDNBI_SCMVC MAJOR DNA-BINDING PROTEIN SIMIAN CYTOMEGALOVIRUS 435-462 532-559 (STRAIN COLBURN) PPOLG_HPAVS GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS 207-241 1025- 1115- (STRAIN AGM-27) 1052 1192 PPOLG_HPAVT GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS 203-237 (STRAIN CY-145) PENV_SIVA1 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 269-310 561-588 592-619 652-679 697-724 (AGM155 ISOLATE) PPOL_SIVA1 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 431-458 547-574 637-671 (AGM155 ISOLATE) PPOL_SIVA2 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 45-72 (AGM266 ISOLATE) PENV_SIVAG ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 270-301 566-593 597-624 658-685 703-730 (AGM3 ISOLATE) PPOL_SIVAG POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 436-463 482-516 642-669 (AGM3 ISOLATE) PPOL_SIVA3 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 71-98 (AGM385 ISOLATE) PENV_SIVS4 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 281-308 553-612 642-669 691-718 (F236/SMH4 ISOLATE) PGAG_SIVS4 GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 88-115 (F236/SMH4 ISOLATE) PPOL_SIVS4 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 496-523 (F236/SMH4 ISOLATE) PENV_SIVA1 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 257-291 336-372 548-603 634-708 (ISOLATE AGM/CLONE GRJ-1) PGAG_SIVA1 GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 473-507 (ISOLATE AGM/CLONE GRJ-1) PNEF_SIVA1 NEGATIVE FACTOR SIMIAN IMMUNODEFICIENCY VIRUS 96-137 (ISOLATE AGM/CLONE GRJ-1) PPOL_SIVA1 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 478-515 (ISOLATE AGM/CLONE GRJ-1) VIF_SIVA1 VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS 2-36 (ISOLATE AGM/CLONE GRJ-1) PENV_SIVOD ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 8-35 158-185 589-650 784-816 PPOL_SIVGB PAL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 227-254 636-670 PENV_SIVMK ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 553-608 PGAG_SIVMK GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 88-115 PPOL_SIYMK POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 533-560 PENV_SIVML ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE) 549-608 PENV_SIVMI ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 120-150 550-609 671-715 (MM142-83 ISOLATE) PPOL_SIVMI POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 533-560 (MM142-83 ISOLATE) PENV_SIVM2 ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 156-215 277-289 (MM251 ISOLATE) PENV_SIVSP ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 286-313 554-595 646-722 (PBJ/BC13 ISOLATE) PGAG_SIVSP GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 88-115 (PBJ/BC13 ISOLATE) PPOL_SIYSP POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 499-526 (PBJ/BCI3 ISOLATE) PGAG_SIVMS GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (STM ISOLATE) 88-115 PENV_SWAT ENV POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 3-30 268-298 590-617 651-678 (TYO-1 ISOLATE) PPOL_SIVAT POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 657-691 (TYO-1 ISOLATE) PREV_SIVAT REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 41-68 (TYO-1 ISOLATE) PENV_MPMV ENV POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 422-470 PPOL_MP POL POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 574-612 670-697 PGAG_MIMV GAG POLYPROTEIN SIMIAN MASON-PFIZER VIRUS (MPMV) 222-260 PEXON_VZVD ALKALINE EXONUCLEASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 109-139 PHELI_VZVD PROBADLE HELICASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 490-517 701-728 PRIRI_VZVD RIBONUC-DIPHOSPH REDUCT VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 119-146 LARGE CHA PTEGU_VZVD LARGE TEGUMENT PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 1121- 1579- 1158 1609 PUL14_VZVD HYPOTHETICAL GENE 46 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 64-101 PUL21_VZVD GENE 38 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 380-407 PUL34—VZVD VIRION GENE 24 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 112-139 PUL37_VZVD GENE 21 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 107-134 485-512 719-746 976-1003 PUL41_VZVD HOST SHUTOFF VIRION PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 330-337 PUL43_VZVD GENE 15 MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 129-156 312-349 PUL52_VZVD PROB DNA REP GENE 6 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 301-337 PVGLC_VZVD GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 295-322 PVP40_VZVD CAPSID PROTEIN P40 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 174-208 495-522 PVTER_VZVD PROBABLE DNA PACKING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 394-421 PVGLC_VZVS GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN SCOTT) 295-322 PDPOL_WHVI DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS I 285-326 PDPOL_WHV59 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 59 290-331 POPOL_WHV7 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 7 212-242 290-331 POPOL_WHY8 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 211-241 289-330 PDPOL_WHV81 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 212-242 290-331

TABLE VIII 107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY FOR ALL PROCARYOTIC PROTEINS PCGENE 107 × 178 × 4 Prokaryotic Sequences AREA AREA AREA AREA AREA AREA AREA AREA AREA FILE NAME PROTEIN ORGANISM 1 2 3 4 5 6 7 8 9 P120KL_RICRI 120KD SURFACE-EXPOSED PROTEIN RICKETTSIA RICKETTSII 83-100 240-298 355-382 638-672 746-838 1168- 1202 P17K_RICTY 17KD ANTIGEN PRECURSOR RICKETTSIA TYPHI 67-94 P190_RICRI 190 KD ANTIGEN PRECURSOR (CELL SURFACE) RICKETTSIA RICKETTSII 241-268 460-487 607-634 754-781 829-856 904-931 1220- 1544- 1723- 1254 1571 1750 2065- 2131- 2096 2168 P22KD_DESMO 22.6 KD PROTEIN DESULFUROCOCCUS MOBILIS 25-52 59-89 120-147 P40KD_VIBAN 40 KD PROTEIN PRECURSOR VIBRIO ANGUILLARUM 153-196 P60IM_ECOLI 60 KD INNER-MEMBRANE PROTEIN ESCHERICHIA COLI 511-538 P60IM_PROMI 60 KD INNER-MEMBRANE PROTEIN PROTEUS MIRABILIS 14-41 P65KD_ZYMMO 65 KD PROTEIN ZYMOMONAS MOBILIS 95-122 444-524 P6PGD_BACSU PROB 6- BACILLUS SUBTILIS 24-51 218-246 PHOSPHOGLUCONATE DEHYDROGENASE P6PGD_ECOLI 6-PHOSPHOGLUCONATE ESCHERICHIA COLI 205-232 DEHYDROGENASE P6PGD_SALTY 6-PHOSPHOGLUCONATE DEHYDROGENASE SALMONELLA TYPHIMURIUM 205-232 PAACA_STAAU 6-AMINOGLYCOSIDE STAPHYLOCOCCUS AUREUS 450-477 N-ACETYLTRANSFERASE PAAT_BACSP ASPARTATE AMINOTRANSFERASE BACILLUS SP 146-173 185-212 PAAT_ECOLI ASPARTATE AMINOTRANSPERASE ESCHERICHIA COLI 351-378 PABC_ECOLI ABC PROTEIN ESCHERICHIA COLI 176-203 PABIC_LACLA ABORTIVE PHAGE RESISTANCE LACTOCOCCUS LACTIS 85-126 170-204 209-273 PROTEIN ABIC PACCR_AGRTU TRANSCRIPTIONAL REPRESSOR ACCR AGROBACTERIUM TUMEFACIENS 127-154 PACEA_ECOLI ISOCITRATE LYASE ESCHERICHIA COLI 398-432 PACON_BACSU ACONITATE HYDRATASE BACILLUS SUBTILIS 48-75 PACON_ECOLI ACONITATE HYDRATASE ESCHERICHIA COLI 41-68 PACOR_ALCEU ACETOIN CATABOLISM REG PRO ALCALIGENES EUTROPHUS 85-112 613-640 PACP_ECOLI ACYL CARRIER PROTEIN ESCHERICHIA COLI 4-31 PACRA_ECOLI ACRIPLAVIN RESISTANCE PROTEIN A ESCHERICHIA COLI 213-247 PRECURSOR PACRB_ECOLI ACRIFLAVIN RESISTANCE PROTEIN B ESCHERICHIA COLI 520-551 PACRF_ECOLI ACRIFLAVIN RESISTANCE PROTEIN F ESCHERICHIA COLI 512-550 726-753 PACT3_STRCO PUTATIVE KETOACYL REDUCTASE STREPTOMYCES COELICOLOR 157-184 PACTA_LISMO ACTIN-ASSEMBLY INDUCING PROTEIN LISTERIA MONOCYTOGENES 237-264 576-603 PRECURSOR PACVS_NOCLA ACV SYNTHETASE NOCARDIA LACTAMDURANS 3129- 3163 PADAA_BACSU METPHOSTRIESTER-DNA BACILLUS SUBTILIS 136-170 ALKYLTRANSFERASE PADDA_BACSU ATP-DEPENDENT NUCLEASE SUBUNIT A BACILLUS SUBTILIS 398-425 454-481 522-556 1005- 1032 PADDB_BACSU ATP-DEPENDENT NUCLEASE SUBUNIT B BACILLUS SUBTILIS 257-284 870-903 943-977 PADHI_CLOAB NADPH-DEPENDENT BUTANOL CLOSTRIDIUM ACETOBUTYLICUM 284-311 DEHYDROGENASE PADHA_CLOAB NADPH-DEPENDENT BUTANOL CLOSTRIDIUM ACETOBITYLICUM 298-325 DEHYDROGENASE A PADHE_CLOAB NADPH-DEPENDENT BUTANOL CLOSTRIDIUM ACETOBUTYLICUM 298-325 DEHYDROGENASE B PADHE_CLOAB ALCOHOL DEHYDROGENASE CLOSTRIDIUM ACETOBUTYLICUM 653-680 779-806 PADHE_ECOLI ALCOHOL DEHYDROGENASE ESCHERICHIA COLI 271-298 PADPIY_MYCGE 140 KD ADHESIN PRECURSOR MYCOPLASMA GENITALIUM 90-131 697-724 923-950 990- 1169- 1387- 1017 1199 1414 PADPI_MYCPN ADHESIN P1 PRECURSOR MYCOPLASMA PNEUMONIAE 1557- 1584 PADT_RICPR ADP ATP CARRIER PROTEIN RICKETTSIA PROWAZEKII 276-307 PAERA_AERNY AEROLYSIN PRECURSOR AEROMONAS HYDROPHILA 278-305 PAGAL_STRMU ALPHA-GALACTOSIDASE STREPTOCOCCUS MUTANS 419-483 597-633 PAGAR_PSEAT BETA-AGARASE PRECURSOR PSEUDOMONAS ATLANTICA 26-53 PAGR_STAAU ACCESSORY GENE REGULATOR PROTEIN STAPHYLOCOCCUS AUREUS 129-159 165-192 PAIL_YEREN ATTACH INVAS LOCUS PROTEIN YERSINIA ENTEROCOLITICA 19-46 PRECURSOR PAKIH_ECOLI ASPARTOKINASE I ESCHERICHIA COLI 3-30 466-493 503-530 PAK2H_ECOLI ASPARTOICINASE II ESCHERICHIA COLI 51-78 608-635 PAK2_BACSU ASPARTATE KINASE II ALPHA BACILLUS SUBTILIS 266-312 AND BETA SUBUNITS PAKAB_CORGL ASPARTATE KINASE ALPHA CORYNEBACTERIUM GLUTMICUM 5-32 AND BETA SUBUNITS PALF_ECOLI FRUCTOSE-BISPHOSPNATE ALDOLASE ESCHERICHIA COLI 286-316 PALGB_PSEAE ALGINATE BIOSYN TRANSL REG PSEUDOMONAS AERUGINOSA 160-194 PROTEIN ALGB PALGE_PSEAE ALGINATE PRODUCTION PROTEIN PSEUDOMONAS AERUGINOSA 349-376 ALGE PRECURSO PALGP_PSEAE TRANSCRIPTIONAL REGULATORY PSEUDOMONAS AERUGINOSA 81-115 PROTEIN ALGP PALKB_PSEOL ALKANE-1 MONOOXYGENASE PSEUDOMONAS OLEOVORANS 115-142 PALKT_PSEOL RUBREDXIN-NAD(+) REDUCTASE PSEUDOMONAS OLEOVORANS 138-172 338-365 PALR2_ECOLI ALANINE RACEMASE CATABOLIC ESCHERICHIA COLI 9-36 PRECURSOR PALR_BACST ALANINE RACEMASE BACILLUS STEAROTHERMOPHILUS 326-353 PALSR_BACSU ALS OPERON BACILLUS SUBTILIS 119-146 REGULATORY PROTEIN PALYS_BACSP AUTOLYSIN PRECURSOR BACILLUS SP 157-187 PALYS_BACSU AUTOLYSIN PRECURSOR BACILLUS SUBTILIS 147-191 PALYS_STAAU AUTOLYSIN STAPHYLOCOCCUS AUREUS 244-271 PAMIA_STRPN AMIA PROTEIN PRECURSOR STREPTOCOCCUS PNEUMONIAE 223-264 297-338 446-473 PAMID_PSECL AMIDASE PSEUDOMONAS CHLORORAPHIS 72-99 PAMIE_STRPN OLIGOPEPTIDE TRANSPORT STREPTOCOCCUS PNEUMONIAE 187-214 PROTEIN AMIE PAMPA_ECOLI AMINOPEPTIDASE A/I ESCHERICHIA COLI 111-138 199-226 PAMPC_SERMA BETA-LACTAMASE PRECURSOR SERRATIA MARCESCENS 231-258 PAMPL_RICPR CYTOSOL AMINOPEPTIDASE RICKETTSIA PROWAZEKII 3-47 72-99 PAMPN_ECOLI AMINOPEPTIDASE N ESCHERICHIA COLI 655-682 PAMPP_ECOLI X-PRO AMINOPEPTIDASE ESCHERICHIA COLI 110-137 PAMPT_THEAQ AMINOPEPTIDASE T THERMUS AQUATICUS 281-308 PAMYI_DICTH ALPHA-AMYLASE 1 DICTYOGLOMUS THERMOPHILUM 507-534 PAMY2_DICTH ALPHA-AMYLASE 2 DICTYOGLOMUS THERMOPHILUM 151-178 507-534 PAMY2_SALTY CYLOPLASMIC ALPHA-AMYLASE SALMONELLA TYPHIMURIUM 70-104 PAMY3_DICTH ALPHA-AMYLASE 3 DICTYOGLOMUS THERMOPHILUM 280-307 PAMYB_BACCI BETA-AMYLASE PRECURSOR BACILLUS CIRCULANS 61-88 PAMYB_BACPO BETA-AMYLASE BACILLUS POLYMYXA 60-87 266-293 1143- 1184 PAMYB_CLOTU BETA-AMYLASE, THERMOPHILIC CLOSTRIDIUM THEROSULFUROGENES 269-296 378-405 459-486 PRECURSOR PAMYG_CLOSP GLUCOAMYLASE PRECURSOR CLOSTRIDIUM SP 103-148 480-510 PAMYM_BACST MALTOGENIC ALPHA-AMYLASE BACILLUS STEAROTHERMOPHILUS 426-453 PRECURSOR PAMYR_BACS8 RAW-STARCH-DIGESTING AMYLASE BACILLUS SP 210-237 435-465 615-642 PAMY_AERHY ALPHA-AMYLASE PRECURSOR AEROMONAS HYDROPHILA 415-453 PAMY_ALTHA ALPHA-AMYLASE PRECURSOR ALTEROMONAS HALOPLANKTIS 166-193 PAMY_BACAM ALPHA-AMYLASE PRECURSOR BACILLUS AMYLOLIQUEFACIENS 102-136 PAMY_BACCI ALPHA-AMYLASE PRECURSOR BACILLUS CIRCULANS 212-239 437-474 PAMY_BACME ALPHA-AMYLASE PRECURSOR BACILLUS MEGATERIUM 61-88 441-482 PAMY_BACSU ALPHA-AMYLASE PRECURSOR BACILLUS SUBTILIS 165-205 281-308 PAMY_BUTFI ALPHA-AMYLASE PRECURSOR BUTYRIVIBRIO FIBRISOLVENS 377-418 546-573 579-606 795-822 PAMY_CLOAB PUTATIVE ALPHA-AMYLASE CLOSTRIDIUM ACETOBUTYLICUM 283-310 PAMY_CLOTU ALPHA-AMYLASE PRECURSOR CLOSTRIDIUM THERMOSULFUROGENES 431-468 612-642 PAMY_STRLM ALPHA-AMYLASE PRECURSOR STREPTOMYCES LIMOSUS 173-200 PANFA_AZOVI NITROGEN FIXATION PROTEIN ANFA AZOTOBACTER VINELANDII 232-259 PANFD_AZOVI NITROGENASE IRON-IRON AZOTOBACTER VINELANDII 95-122 PROTEIN ALPHA CHAIN PANFK_AZOVI NITROGENASE IRON-IRON AZOTOBACTER VINELANDII 369-396 PROTEIN BETA CHAIN PANGR_VIBAN ANGR PROTEIN VIBRIO ANGUILLARUM 93-120 169-203 PAPCE_FREDI PHYCOBILISOME 120 KD FREMYELLA DIPLOSIPHON 51-78 LINKER POLYPEPTIDE PAPCE_SYNP6 PHYCOBILISOME LINKER POLYPEPTIDE SYNECHOCOCCUS SP 37-64 585-615 PAPCE_SYNY4 PHYCOBILISOME 120 KD SYNECHOCOCCUS SP 52-79 LINKER POLYPEPTIDE PAPHC_SALTY ALKYL HYDROPEROXIDE REDUCTASE SALMONELLA TYPHIMURIUM 62-89 C22 PROTEIN PAPI_ACHLY PROTEASE I PRECURSOR ACHEOMOBACTER LYTICUS 478-505 PAPPC_ECOLI PROBABLE CYTOCHROME OXIDASE ESCHERICHIA COLI 118-148 SUBUNIT I PAPRD_PSEAE ALKALINE PROTEASE SECRETION PSEUDOMONAS AERUGINOSE 416-450 PROTEIN APID PAPRE_PSEAE ALKALINE PROTEASE SECRETION PSEUDOMONAS AERUGINOSA 133-193 208-235 247-277 PROTEIN APRE PAPT_ECOLI ADENINE PHOSPHORIBOSYL- ESCHERICHIA COLI 121-148 TRANSFERASE PAPU_THEET ALPHA-AMYLASE-PULLULANASE THERMONANAERBACTER ETHANOLICUS 276-303 347-374 936-982 987- 1210- 1381- 1014 1254 1408 PRECURSOR PARCA_MYCAR ARGININE DEIMINASE MYCOPLASMA ARGININI 60-87 218-245 PARCE_ECOLI AEROBIC RESPIRATION CONTROL ESCHERICHIA COLI 102-150 302-329 399-426 PROTEIN ARCB PARCD_PSEAE PROBABLE ARGININE/ORNITHINE PSEUDOMONAS AERUGINOSA 274-301 386-420 ANTIPORTER PARGA_ECOLI AMINO-ACID ACETYLTRANSFERASE ESCHERICHIA COLI 82-109 PARGT_ECOLI LYS-ARO-ORN-BINDING PROTEIN ESCHERICHIA COLI 84-111 (LAO) PRECURSOR PAROA_STAAU PHOSPHOSHIXIMATE I- STAPHYLOCOCCUS AUREUS 86-120 CARBOXYVINYLTRANSFER PAROC_ECOLI CHORISMATE SYNTHASE ESCHERICHIA COLI 68-95 PAROC_SALTI CHORISMATE SYNTHASE SALMONELLA TYPHI 68-95 PAROD_BACSU DEHYDROQUINATE DEHYDRATASE BACILLUS SUBTILIS 49-76 PAROK_ECOLI SHIKIMATE KINASE I ESCHERICHIA COLI 84-118 PARP4_STRPY IGA RECEPTOR PRECURSOR STREPTOCOCCUS PYOGENES 12-46 127-157 266-324 PARP_ECOLI ARP PROTEIN ESCHERICHIA COLI 255-282 PARSA_ECOLI ARSENICAL PUMP-DRIVING ATPASE ESCHERICHIA COLI 201-238 PARSB_ECOLI ARSENICAL PUMP MEMBRANE ESCHERICHIA COLI 291-318 PROTEIN PARSB_STAAU ARSENICAL PUMP MEMBRANE STAPHYLOCOCCUS AUREUS 27-71 295-322 PROTEIN PARSB_STAXY ARSENICAL PUMP MEMBRANE STAPHYLOCOCCUS XYLOSUS 27/71 295-232 PROTEIN PARSR_STAAU ARSENICAL RESIST OPERON STAPHYLOCOCCUS AUREUS 56-93 REPRESSOR PROTEIN PARTA_ECOLI ARTA PROTEIN ESCHERICHIA COLI 3-30 PARTI_ECOLI TRANSPORT SYSTEM PROTEIN ARTI ESCHERICHIA COLI 105-132 213-240 PARTP_ECOLI TRANSPORT SYSTEM PROTEIN ARTP ESCHERICHIA COLI 176-206 PASAI_ENTFA AGGREGATION SUBSTANCE PRECURSOR ENTEROCOCCUS FAECALIS 195-254 478-505 799-826 859-896 PASNA_ECOLI ASPARTATE-AMMONIA LIGASE ESCHERICHIA COLI 127-158 PASNR_ECOLI ASPARAGINE SYNTHASE B ESCHERICHIA COLI 450-477 PASNC_ECOLI REGULATORY PROTEIN ASNC ESCHERICHIA COLI 116-143 PASPA_BACSU ASPARTATE AMMONIA-LYASE BACILLUS SUBTILIS 7-34 PASPA_ECOLI ASPARTATE AMMONIA-LYASE ESCHERICHIA COLI 204-236 PASPA_SERMA ASPARTATE AMMONIA-LYASE SERRATIA MARCESCENS 204-231 PASPG_BACLI L-ASPARAGINASE BACILLUS LICHENIFORMIS 252-288 PASPG_ERWCH L-ASPARAGINASE PRECURSOR ERWINIA CHRYSANTHUEMI 188-218 PASPQ_ACIGL GLUTAMINASE-ASPARAGINASE ACINETOBACTER GLUTAMINASIFICANS 46-80 PASSY_ECOLI ARGININOSUCCINATE SYNTHASE ESCHERICHIA COLI 354-381 PASSY_METBA ARGININOSUCCINATE SYNTHASE METHANOSARCINA BARKERI 287-314 PATBP_STAAU POTENTIAL ATP-BINDING PROTEIN STAPHYLOCOCCUS AUREUS 41-68 201-245 PATKA_ENTFA POTASSIUM/COPPER-TRANSPORTING ENTEROCOCCUS FAECALIS 41-80 347-374 ATPASE A PATKB_ENTFA POTASSIUM/COPPER-TRANSPORTING ENTEROCOCCUS FAECALIS 280-310 450-477 ATPASE B PATMB_SALTY MG(2+) TRANSPORT ATPASE, SALMONELLA TYPHIMURIUM 503-530 P-TYPE PATP6_SYNP6 ATP SYNTHASE A CHAIN SYNECHOCOCCUS SP 233-260 PATP6_VIBAL ATP SYNTHASE A CHAIN VIBRIO ALGINOLYTICUS 11-38 PATPA_ANASP ATP SYNTHASE ALPHA CHAIN ANABAENA SP 9-36 96-130 PATPA_BACME ATP SYNTHASE ALPHA CHAIN BACILLUS MEGATERIUM 4-36 453-480 PATPA_ECOLI ATP SYNTHASE ALPHA CHAIN ESCHERICHIA COLI 486-513 PATPA_ENTPA ATP SYNTHASE ALPHA CHAIN ENTEROCOCCUS FAECALIS 4-36 484-358 PATPA_MYCGA ATP SYNTHASE ALPHA CHAIN MYCOPLASMA GALLISEPTICUM 362-409 PATPA_PROMO ATP SYNTHASE ALPHA CHAIN PROPIONIGENIUM MODESTUM 6-36 PATPA_RHORU ATP SYNTHASE ALPHA CHAIN RHODOSPIRILLUM RUBRUM 165-200 459-486 PATPA_SULAC ATPASE ALPHA CHAIN SULFOLOBUS ACIDOCALDARIUS 318-345 562-589 PATPA_SYNPI ATP SYNTHASE ALPHA CHAIN SYNECHOCOCCUS SP 7-44 PATPA_SYNP6 ATP SYNTHASE ALPHA CHAIN SYNECHOCOCCUS SP 8-45 362-389 PATPA_SYNY3 ATP SYNTHASE ALPHA CHAIN SYNECHOCYSTIS SP 8-37 454-300 PATPA_THEP3 ATP SYNTHASE ALPHA CHAIN THERMOPHILIC BACTERIUM PS-3 9-36 PATPA_VIBAL ATP SYNTHASE ALPHA CHAIN VIBRIO ALGINOLYTICUS 464-513 PATPB_M4ASP ATP SYNTHASE BETA CHAIN ANABAENA SP 280-307 370-397 PATPB_BACPI ATP SYNTHASE BETA CHAIN BACILLUS FIRMUS 163-190 358-385 PATPB_MYCOA ATP SYNTHASE BETA CHAIN MYCOPLASMA GALLISEPTICUM 375-402 PATPB_RHORU ATP SYNTHASE BETA CHAIN RHODOSPIRILLUM RUBRUM 359-386 PATPB_SULAC ATPASE BETA CHAIN SULFOLOBUS ACIDOCALDARIUS 164-191 PATPB_SYNPI ATP SYNTHASE BETA CHAIN SYNECHOCOCCUS SP 381-408 PATPB_SYNP6 ATP SYNTHASE BETA CHAIN SYNECHOCOCCUS SP 291-318 381-408 PATPB_SYNY3 ATP SYNTHASE BETA CHAIN SYNECHOCYSTIS SP 381-408 PATPD_ANASP ATP SYNTHASE DELTA CHAIN ANABAENA SP 109-139 143-170 PATPD_BACFI ATP SYNTHASE DELTA CHAIN BACILLUS FIRMUS 63-90 133-160 PATPD_BACME ATP SYNTHASE DELTA CHAIN BACILLUS MEGATERIUM 132-159 PATPD_ENTFA ATP SYNTHASE DELTA CHAIN ENTEROCOCCUS FAECALIS 14-41 PATPD_PROMO ATP SYNTHASE DELTA CHAIN PROPIONIGENIUM MODESTUM 79-116 118-149 PATPD_RHOBL ATP SYNTHASE DELTA CHAIN RHODOPSEUDOMONAS BLASTICA 125-152 PATPD_RHORU ATP SYNTHASE DELTA CHAIN RHODOSPIRILLUM RUBRUM 119-146 PATPD_SYNP1 ATP SYNTHASE DELTA CHAIN SYNECHOCOCCUS SP 100-127 PATPD_SYNY3 ATP SYNTHASE DELTA CHAIN SYNECHOCYSTIS SP 113-147 PATPD_VIBAL ATP SYNTHASE DELTA CHAIN VIBRIO ALGINOLYTICUS 110-137 PATPE_BACF1 ATP SYNTHASE EPSILON CHAIN BACILLUS FIRMUS 53-80 PATPE_MYCGA ATP SYNTHASE EPSILON CHAIN MYCOPLASMA GALLISEPTICUM 99-126 PATPE_PROMO ATP SYNTHASE EPSILON CHAIN PROPIONIGENIUM MODESTUM 100-127 PATPE_SYNP1 ATP SYNTHASE EPSILON CHAIN SYNECHOCOCCUS SP 72-106 PATPF_ANASP ATP SYNTHASE B CHAIN ANABAENA SP 17-44 51-78 137-164 PATPF_BACF1 ATP SYNTHASE B CHAIN BACILLUS FIRMUS 110-151 PATPF_BACME ATP SYNTHASE B CHAIN BACILLUS MEGATERIUM 55-85 122-170 PATPF_MYCGA ATP SYNTHASE B CHAIN MYCOPLASMA GALLISEPTICUM 82-135 170-197 PATPF_SYNPI ATP SYNTHASE B CHAIN SYNECHOCOCCUS SP 15-49 111-159 PATPF_SYNP6 ATP SYNTHASE B CHAIN SYNECHOCOCCUS SP 12-39 128-155 PATPF_THEP3 ATP SYNTHASE B CHAIN PRECURSOR THERMOPHILIC BACTERIUM PS-3 50-17 PATPG_ANASP ATP SYNTHASE GAMMA CHAIN ANABAENA SP 276-310 PATPG_ECOLI ATP SYNTHASE GAMMA CHAIN ESCHERICHIA COLI 253-283 PATPG_MYCGA ATP SYNTHASE GAMMA CHAIN MYCOPLASMA GALLISEPTICUM 28-62 92-140 PATFG_RHORU ATP SYNTHASE GAMMA CHAIN RHODOSPIRILLUM RUBRUM 270-297 PATFG_SYNPI ATP SYNTHASE GAMMA CHAIN SYNECHOCOCCUS SP 280-307 PATPG_SYNY3 ATP SYNTHASE GAMMA CHAIN SYNECHOCYSTIS SP 96-126 280-307 PATPI_MYCGA ATP SYNTHASE PROTEIN I MYCOPLASMA GALLISEPTICUM 133-167 PATPX_ANASP ATP SYNTHASE B′CHAIN ANABAENA SP 129-156 PATPX_BACFI ATP SYNTHASE BETA CHAIN BACILLUS FIRMUS 162-189 356-383 PATPX_RHORU ATP SYNTHASE B′CHAIN RHODOSPIRILLUM RUBRUM 40-74 PATPX_SYNPI ATP SYNTHASE B′CHAIN SYNECHOCOCCUS SP 57-110 128-155 PATPX_SYNP6 ATP SYNTHASE B′CHAIN SYNECHOCOCCUS SP 70-100 PATPX_SYNY3 ATP SYNTHASE B′CHAIN SYNECHOCYSTIS SP 108-135 PATPZ_BACME ATP SYNTHASE PROTEIN I BACILLUS MEGATERIUM 14-62 PATPZ_SYNPI ATP SYNTHASE PROTEIN I SYNECHOCOCCUS SP 90-131 PAVRB_PSESG AVIRULENCE B PROTEIN PSEUDOMONAS SYRINGAE 184-211 233-260 PBA7I_EUBSP 7-ALPHA-HYDROXYSTEROID EUBACTERIUM SP 26-53 DEHYDROGENASE PBA72_EUBSP 7-ALPHA-HYDROXYSTEROID EUBACTERIUM SP 26-53 DEHYDROGENASE PBACH_HALHM HALORHODOPSIN HALOBACTERIUM HALOBIUM 145-179 PBACH_HALSG HALORHODOPSIN PRECURSOR HALOBACTERIUM SP 180-214 PBARA_ECOLI SENSOR PROTEIN BARA ESCHERICHIA COLI 122-186 PBAG_STRAG IGA FC RECEPTOR PRECURSOR STREPTOCOCCUS AGALACTIAE 92-119 138-204 267-306 343-385 487-524 562-589 1014- 1041 PBAHG_VITSP BACTERIAL HEMOGLOBIN VITREOSCILLA SP 119-146 PBAIC_EUBSP BILE ACID-INDUCIBLE OPERON EUBACTERIUM SP 423-450 PROTEIN C PBARA_ECOLI SENSOR PROTEIN BARA ESCHERICHIA COLI 334-361 425-455 PBASS_ECOLI SENSOR PROTEIN BASS ESCHERICHIA COLI 122-156 PBAT_HALHA PUTATIVE BACTERIO-OPSIN ACTIVATOR HALOBACTERIUM HALOBIUM 408-442 PBAX_ECOLI BAX PROTEIN ESCHERICHIA COLI 21-64 PBCCP_ECOLI BIOTIN CARBOXYL CARRIER PROTEIN ESCHERICHIA COLI 6-35 PBCHH_RROCA METHYLTRANSFERASE RHODOBACTER CAPSULATUS 1000-1032 PBcHN_RROCA PROYOCHLOROPHYLLIDE REDUCTASE RHODOBACTER CAPSULATUS 249-276 46 KD CHAIN PBCNS_CLOPE BACTERIOCIN BCN5 CLOSTRIDIUM PERFRINGENS 72-99 585-646 PBCPA_PROAE BACTERIOCHLOROPHYLL A PROTEIN PROSTHECOCHLORIS AESTUARII 63-93 PBCSC_ACEXY CELLULOSE SYNTHASE OPERON ACETOBACTER XYLINUM 131-158 1055- C PROTEIN 1082 PBCSD_ACEXY CELLULOSE SYNTHASE OPERON ACETOBACTER XYLINUM 10-37 C PROTEIN PBENA_ACICA BENZOATE 1,2-DIOXYGENASE ACINETOBACTER CALCOACETICUS 190-217 ALPHA SUBUNIT PBETT_ECOLI HIGH AFFINITY CHOLINE ESCHERICHIA COLI 243-270 TRANSPORT PROTEIN PBEXA_HAEIN BEXA PROTEIN HAEMOPHILUS INFLUENZAE 23-50 PBEXC_HAEIN BEXC PROTEIN HAEMOPHILUS INFLUENZAE 157-184 226-253 PBEXC_HEBIN BEXO PROTEIN HAEMOPHILUS INFLUENZAE 205-239 PBFR_NITWI BACTERIOPERRITIN NITROBACTER WINOGRADSKYI 8-35 PBGA2_ECOLI EVOLVED BETA-GALACTOSIDASE ESCHERICHIA COLI 955-985 ALPHA-SUBUNIT PBGAL_BACST BETA-GALACTOSIDASE BACILLUS STEAROTHERMOPHILUS 599-633 PBGAL_CLOAB BETA-GALACTOSIDASE CLOSTRIDIUM ACETOBUTYLICUM 824-851 PBGAL_CLOTU BETA-GALACTOSIDASE CLOSTRIDIUM THERMOSULFUROGENES 161-191 PBGAL_KLEPN BETA-GALACTOSIDASE KLEBSIELLA PNEUMONIA 245-272 PBGAL_LACDE BETA-GALACTOSIDASE LACTOBACILLUS DELBRUECKII 305-332 PBGAL_STRTR BETA-GALACTOSIDASE STREPTOCOCCUS THERMOPHILUS 188-215 PBGAL_SULSO BETA-GALACTOSIDASE SULFOLOBUS SOLFATARICUS 59-86 179-206 PBGAM_LEULA BETA-GALACTOSIDASE SMALL LEUCONOSTOC LACTIS 129-156 SUBUNIT PBGAM_SULSO BETA-GALACTOSIDASE SULFOLOBUS SOLFATARICUS 106-140 POGLA_CLOTM BETA-GLUCOSIDASE A CLOSTRIDIUM THERMOCELLUM 353-380 418-445 PBGLB_CLOTM THERMOSTABLE BETA-GLUCOSIDASE B CLOSTRIDIUM THERMOCELLUM 259-286 375-409 554-581 631-665 PBGLR_ECOLI BETA-GLUCURONIDASE ESCHERICHIA COLI 464-494 536-563 PBGLS_AGRSP BETA-GLUCOSIDASE AGROBACTERIUM SP 421-448 PBGLS_BUTFI BETA-GLUCOSIDASE A BUTYRIVIBRIO FIBRISOLVENS 85-112 435-462 692-719 738-765 PBIN3_STAAU POTENTIAL DNA-INVERTASE BIND STAPHYLOCOCCUS AUREUS 60-87 PBINL_STAAU TRANSPOSON TN552 RESOLVASE STAPHYLOCOCCUS AURIUS 163-197 PBINR_STAAU DNA-INVERTASE BINR STAPHYLOCOCCUS AUREUS 163-190 PB1OA_BACSH AMINOTRANSFERASE BACILLUS SPHAERICUS 33-60 PBIOB_BACSH BIOTIN SYNTHETASE BACILLUS SPHAERICUS 145-172 PBIOB_ECOLI BIOTIN SYNTHETASE ESCHERICHIA COLI 130-157 PBIOD_BACSH DETHIOBIOTIN SYNTHASE BACILLUS SPHAERICUS 144-171 PBLAI_BACCE BETA-LACTAMASE PRECURSOR, TYPE I BACILLUS CEREUS 91-118 275-305 PELAI_HAEIN BETA-LACTAMASE ROB-I PRECURSOR RAEMOPHILUS INFLUENZAE 152-179 204-231 PBLA2_BACCE BETA-LACTAMASE PRECURSOR, TYPE II BACILLUS CEREUS 18-67 201-228 PBLA2_BACSP BETA-LACTAMASE PRECURSOR, TYPE II BACILLUS SP 18-67 PBLA3_BACCE BETA-LACTAMASE PRECURSOR, TYPE III BACILLUS CEREUS 35-83 95-129 PBLA4_PSEAE BETA-LACTAMASE PSE-4 PRECURSOR PSEUDOMONAS AERUGINOSA 19-50 PBLAB_BACCE BETA-LACTAMASE PRECURSOR, TYPE II BACILLUS CEREUS 20-66 200-227 PELAB_BACFR BETA-LACTAMASE PRECURSOR, TYPE II BACTEROIDES FRAGILIS 22-49 PBLAC_BACCE BETA-LACTAMASE PRECURSOR, TYPE I BACILLUS CEREUS 93-120 276-303 PBLAC_BACLI BETA-LACTAMASE PRECURSOR BACILLUS LICHENIFORMIS 47-74 86-115 PBLAC_PROMI BETA-LACTAMASE PRECURSOR PROTEUS MIRABILIS 191-221 PBLAC_PROVU BETA-LACTAMASE PROTEUS VULGARIS 4-38 240-267 PBLAC_STRAL BETA-LACTAMASE PRECURSOR STREPTOMYCES ALBUS G 43-70 PBLAD_KLEPN BETA-LACTAMASE PRECURSOR KLEBSIELLA PNEUMONIAE 121-148 PBLAI_STAAU PENICILLINASE REPRESSOR STAPHYLOCOCCUS AUREUS 19-74 99-126 PBLAO_ECOLI BETA-LACTAMASE PRECURSOR ESCHERICHIA COLI 118-166 235-262 PBLAP_ECOLI BETA-LACTAMASE PSE-2 PRECURSOR ESCHERICHIA COLI 155-196 PBLAR_BACLI REGULATORY PROTEIN BLARI BACILLUS LICHENIFORMIS 129-156 515-552 PBLAR_STAAU REGULATORY PROTEIN BLARI STAPHYLOCOCCUS AUREUS 87-114 122-161 234-261 281-312 503-539 PBMP_TREPA BASIC MEMBRANE PROTEIN PRECURSOR TREPONEMA PALLIDUM 312-346 PBMR_BACSU MULTIDRUG RESISTANCE PROTEIN BACILLUS SUBTILIS 277-304 PBNZA_PSEPU BENZENE 1,2-DIOXYGENASE PSEUDOMONAS PUTIDA 36-63 ALPHA SUBUNIT PBNZB_PSEPU BENZENE 1,2-DIOXYGENASE PSEUDOMONAS PUTIDA 119-153 BETA SUBUNIT PBNZD_PSEPU P4 SUBUNIT PSEUDOMONAS PUTIDA 179-213 PBPS2_DESAM BPS2 PROTEIN DESULFUROLOBUS AMBIVALENS 157-237 242-290 311-355 391-425 543-573 PERAB_PSEAE CARRIER PROTEIN PSEUDOMONAS AERUGINOSA 260-287 313-340 PBRAE_PSEAE TRANSPORT PROTEIN BRAE PSEUDOMONAS AERUGINOSA 254-281 PBRAO_PSEAE BRAG PROTEIN PSEUDOMONAS AERUGINOSA 7-34 PBTUB_ECOLI VITAMIN B12 RECEPTOR PRECURSOR ESCHERICHIA COLI 439-466 PBTUE_ECOLI VITAMIN B12 TRANSPORT ESCHERICHIA COLI 6-33 PERIPLASMIC PROTEIN PBVGA_BORPE TRANSCRIPTION REGULATOR BVGA BORDETELLA PERTUSSIS 174-205 BORDETELLA BRONCHISEPTICS PBVGB_BORPE PERIPLASMIC PROTEIN BORDETELLA PERTUSSIS 116-143 BVGB PRECURSOR PBVGC_BORPE SENSOR PROTEIN BVOC BORDETELLA PERTUSSIS 39-66 202-229 PEVGS_BORBR VIRULENCE BVGS PROTEIN BORDETELLA BRONCHISEPTICA 113-143 341-368 501-531 PRECURSOR PBXA_CLOBO BOTULINUM NEUROTOXIN TYPE A CLOSTRIDIUM BOTULINUM 313-340 686-729 733-762 815-842 851-895 968-995 1159- PRECURSOR 1207 PBXB_CLOBO BOTULINUM NEUROTOXIN TYPE B CLOSTRIDIUM BOTULINUM 666-693 720-762 802-832 853-890 1004- 1058- PRECURSOR 1031 1089 PBXC1_CLOBO BOTULINUM NEUROTOXIN TYPE CLOSRTIDIUM BOTULINUM 86-113 314-341 730-773 798-825 850-892 C1 PRECURSOR PBXD_CLOBO BOTULINUM NEUROTOXIN TYPE CLOSTRIDIUM BOTULINUM 473-500 526-576 727-770 804-831 847-892 906-963 1060- D PRECURSOR 1087 PBXE_CLOBO BOTULINUM NEUROTOXIN TYPE CLOSTRIDIUM BOTULINUM 254-291 350-381 704-753 773-811 890-917 992- 1115- E PRECURSOR 1019 1149 PBXE_CLOBU BOTULINUM NEUROTOXIN TYPE CLOSTRIDIUM BUTYRICUM 254-291 350-381 704-753 774-808 890-917 992- 1115 E PRECURSOR 1019 1149 PBXF_CLOBO BOTULINUM NEUROTOXIN TYPE CLOSTRIDIUM BOTULINUM 669-710 735-772 892-919 1013- 1095- 1183- F PRECURSOR 1040 1122 1210 PC550_MICAE CYTOCHROME C550 MICROCYSTIS AERUGINOSA 3-30 PCADA_BACFI PROBABLE CADMIUM-TRANSPORTING BACILLUS FIRMUS 30-57 100-131 165-192 276-306 533-567 ATPASE PCADA_STAAU PROBABLE CADIUM-TRANSPORTING STAPHYLOCOCCUS AUREUS 282-309 536-570 ATPASE PCADC_ECOLI TRANSCRIPTIONAL ACTIVATOR CADC ESCHERICHIA COLI 54-85 412-443 PCAFA_YERPE F1 CAPSULE ANCHORING PROTEIN YERSINIA PESTIS 203-240 416-457 530-557 619-646 PRECURSOR PCAPA_BACAN CAPA PROTEIN BACILLUS ANTHRACIS 108-138 PCAPB_BACAN CAPB PROTEIN BACILLUS ANTHRACIS 36-70 PCAPP_ANANI PHOSPHOENOLPYRUVATE CARBOXYLASE ANACYSTIS NIDULANS 248-293 PCAPP_ANASP PHOSPHOENOLPYRUVATE CARBOXYLASE ANABAENA SP 98-125 157-184 687-728 PCAPP_CORGL PHOSPHOENOLPYRUVATE CARBOXYLASE CORYNEBACTERIUM GLUTMICUM 15-42 PCAPP_ECOLI PHOSPHOENOLPYRUVATE CARBOXYLASE ESCHERICHIA COLI 35-62 PCARA_BACSU CARBAMOYL-PHOSPHATE SYNTHASE BACILLUS SUBTILIS 274-319 PCARB_BACSU CARBAMOYL-PHOSPHATE SYNTHASE BACILLUS SUBTILIS 790-831 PCARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE ESCHERICHIA COLI 454-481 LARGE CHAI PCAT2_STAAU CHLORAMPHENICOL STAPHYLOCOCCUS AUREUS 7-34 87-114 ACETYLTRANSFERASE PCAT3_STAAU CHLORAMPHENICOL STAPHYLOCOCCUS AUREUS 7-34 87-114 ACETYLTRANSFERASE PCATA_ACICA CATECHOL 1,2-DIOXYGENASE ACINETOBACTER CALCOACETICUS 31-65 PCATA_BACST PEROXIDASE/CATALASE BACILLUS STEAROTHERMOPHILUS 440-470 PCATA_ECOLI CATALASE HPI ESCHERICHIA COLI 579-606 PCATA_MICLU CATALASE MICROCOCCUS LUTEUS 453-480 PCATA_SALTY CATALASE HPI SALMONELLA TYPHMURIUM 515-542 580-607 PCATE_ECOLI CATALASE HPII ESCHERICHIA COLI 175-202 PCAT_CAMCO CHLORAMPHENICOL ACETYLTRANSFERASE CAMPYLOBACTER COLI 84-111 PCAT_CLOBU CHLORAMPHENICOL ACETYLTRANSFERASE CHLOSTRIDIUM BUTYRICUM 88-115 PCAT_ECOLI CHLORAMPHENICOL ESCHERICHIA COLI 92-119 ACETYLTRANSFERASE PCAT_PROM CHLORAMPHENICOL PROTEUS MIRABILIS 92-119 ACETYLTRANSFERASE PCAT_STAIN CHLORAMPHENICOL STAPHYLOCOCCUS INTERMEDIUS 7-34 87-114 ACETYLTRANSFERASE PCAT_STRAG CHLORAMPHENICOL STREPTOCOCCUS AGALACTIAE 7-34 87-114 ACETYLTRANSFERASE PCBHE_COXBU CBHE PROTEIN COXIELLA BURNETII 209-236 PCBPT_THEVU CARBOXYPEPTIDASE T PRECURSOR THERMOACTINOMYCES VULGARIS 48-75 PCCA_ECOLI TRNA NUCLEOTIDYLTRANSFERASE ESCHERICHIA COLI 376-403 PCCMK_SYNP7 CO2 CONC MECH PROTEIN CCMK SYNECHOCOCCUS SP 29-56 PCCMM_SYNP7 CO2 CONC MECH PROTEIN CCMM SYNECHOCOCCUS SP 212-256 331-372 445-486 PCDAS_THEET CYCLOMALTODEXTRINASE THERMOANAEROBACTER ETHANOLICUS 305-332 PCDG1_BACMA CYCLOMALTODEXT GLUCANOTRANS BACILLUS MACERANS 439-466 616-643 PRECURSOR PCDG2_BACMA CYCLOMALTODEXT GLUCANOTRANS BACILLUS MACERANS 210-251 436-466 615-642 PRECURSOR PCDGT_BACCI CYCLOMALTODEXT GLUCANOTRANS BACILLUS CIRCULANS 217-244 442-472 594-651 PRECURSOR PCDGT_BACLI CYCLOMALTODEXT GLUCANOTRANS BACILLUS LICHHENIFORMIS 217-244 442-472 594-647 PRECURSOR PCDGT_BACLOH CYCLOMALTODEXT GLUCANOTRANS BACILLUS OHBENSIS 430-471 PRECURSOR PCDGT_BACSO CYCLOMALTODEXT GLUCANOTRANS BACILLUS SP 210-237 435-462 615-642 PRECURSOR PCDGT_BACS2 CYCLOMALTODEXT GLUCANOTRANS BACILLUS SP 409-471 PRECURSOR PCDGT_BACS3 CYCLOMALTODEXT GLUCANOTRANS BACILLUS SP 210-237 435-462 614-641 PRECURSOR PCDGT_BACSP CYCLOMALTODEXT GLUCANOTRANS BACILLUS SP 210-237 435-465 615-642 PRECURSOR PCDGT_BACSS CYCLOMALTODEXT GLUCANOTRANS BACILLUS SP 217-244 442-472 594-651 PRECURSOR PCDGT_BACST CYCLOMALTODEXT GLUCANOTRANS BACILLUS STEAROTHERMOPHILUS 586-646 PRECURSOR PCDOT_KLEPN CYCLOMALTODEXT GLUCANOTRANS KLEBSIELLA PNEUMONIAE 212-239 PCEAI_ECOLI COLICIN E1 PROTEIN ESCHERICHIA COLI 44-71 285-326 PCEAI_SHISO COLICIN E1* PROTEIN SHIGELLA SONNEI 44-71 284-325 413-440 PCEA2_ECOLI COLICIN E2 ESCHERICHIA COLI 334-368 PCEA3_ECOLI COLICIN E3 ESCHERICHIA COLI 334-368 PCEA6_ECOLI COLICIN E6 ESCHERICHIA COLI 334-368 PCEAB_ECOLI COLICIN B ESCHERICHIA COLI 283-341 PCEAD_ECOLI COLICIN D ESCHERICHIA 284-311 PCEAM_ECOLI COLICIN M ESCHERICHIA COLI 178-227 PCEAN_ECOLI COLICIN N ESCHERICHIA COLI 119-146 173-200 PCEA_CITFR COLICIN A CITROBACTER FREUNDII 228-258 PCEFD_STRCL ISOPENICILLIN N EPIMERASE STREPTOMYCES CLAVULIGERUS 370-397 PCEIA_ECOLI COLICIN IA PROTEIN ESCHERICHIA COLI 68-95 255-282 378-412 415-452 PCEIB_ECOLI COLICIN IB PROTEIN ESCHERICHIA COLI 68-95 255-282 378-412 415-452 PCELA_ACEXY UTP URIDYLYLTRANSFERASE ACETOBACTER XYLINUM 59-89 PCELA_ECOLI PROTEIN CELA ESCHERICHIA COLI 76-103 PCFAA_ECOLI CFA/1 FIMBRIAL SUBUNIT A ESCHERICHIA COLI 27-58 PRECURSOR PCFAC_ECOLI CFA/1 FIMBRIAL SUBUNIT C ESCHERICHIA COLI 138-187 388-456 561-595 PRECURSOR PCFAD_ECOLI CFA/1 FIMBRIAL SUBUNIT D ESCHERICHIA COLI 133-160 PCFAE_ECOLI CFA/1 FIMBRIAL SUBUNIT E ESCHERICHIA COLI 180-207 244-271 PCH10_ACYPS 10 KD CHAPERONIN ACYRTHOSIPHON PISUM SYMBIOTIC BACTERIU 57-95 PCH10_BACSU 10 KD CHAPERONIN BACILLUS SUBTILIS 66-93 PCH10_CHLTR 10 KD CHAPERONIN CHALMYDIA TRACHOMATIS 64-91 PCH10_ECOLI 10 KD CHAPERONIN ESCHEAICHIA COLI 57-84 PCH10_HAEDU 10 KD CHAPERONIN HAEMOPHILUS DUCREYI 68-95 PCH10_LEGMI 10 KD CHAPERONIN LEGIONELLA MICOADEI 57-84 PCH10_RICTS 10 KD CHAPERONIN RICKETTSIA TSUTSUGAMUSHI 65-92 PCH10_THEPi 10 KD CHAPERONIN THERMOPHILIC BACTERIUM PS-3 66-93 PCH60_ACYPS 60 KD CHAPERONIN ACYRTHOSIPHON PISUM SYMBIOTIC BACTERJU 341-382 PCH60_AGRTU 60 KD CHAPERONIN AGROBACTERIUM TUMEFACIENS 117-163 339-370 425-466 PCH60_AMOPS 60 KD CHAPERONIN AMOEBA PROTEUS SYMBIOTIC BACTERIUM 299-333 PCH60_BACSU 60 KD CHAPERONIN BACILLUS SUBTILIS 298-332 337-364 PCH60_BORBU 60 KD CHAPERONIN BORRELIA BURODORFERI 125-163 299-368 PCH60_BRUAB 60 KD CHAPERONIN BRUCELLA ABORTUS 117-144 339-366 PCH60_CHLPN 60 KD CHAPERONIN CHALMYDIA PNEUMONIAE 4-31 PCH60_CHLTR 60 KD CHAPERONIN CHALMYDIA TRACHOMATIS 4-31 PCH60_CHRVI 60 KD CHAPERONIN CHROMATIUM VINOSUM 300-327 PCH60_CLOAB 60 KD CHAPERONIN CLOSTRIDIUM ACETOBUTYLICUM 238-332 337-364 455-482 PCH60_CLOPE 60 KD CHAPERONIN CLOSTRIDIUM PERPRINGENS 337-368 417-444 PCH60_COXBU 60 KD CHAPERONIN COXIELLA BURNETII 300-327 348-382 PCH60_HAEDU 60 KD CHAPERONIN HAEMOPHILUS DUCREYI 339-366 417-444 PCH60_LEGMI 60 KD CHAPERONIN LEGIONELLA MICDADEI 299-333 PCH60_LEGPN 60 KD CHAPERONIN LEGIONELLA PNEUMOPHILA 298-332 452-479 PCH60_MYCLE 60 KD CHAPEPONIN MYCOBACTEPIUM LEPRAE 125-152 236-263 337-364 PCH60_MYCTU 60 KD CHAPERONIN MYCOBACTERIUM TUBERCULOSIS &BOVIS 125-152 337-364 PCH60_PSEAE 60 KD CHAPERONIN PSEUDOMONAS AERUGINOSA 339-366 PCH60_RHILV 60 KD CHAPERONIN RHIZOBIUM LEGUMINOSARUM 117-163 322-370 425-466 PCH60_RICTS 60 KD CHAPERONIN RICKETTSIA TSUTSUGAMUSHI 103-130 293-336 360-394 PCH60_SYNP7 60 KD CHAPERONIN SYNECHOCOCCUS SP 308-335 337-380 PCH60_SYNY3 60 KD CHAPERONIN SYNECHOCYSTIS SP 338-365 455-489 PCH60_THEP3 60 KD CHAPERONIN THERMOPHILIC BACTERIUM PS-3 337-364 PCH62_STEAL 60 KD CHAPERONIN 2 STREPTOMYCES ALBUS G 116-148 337-364 PCHB_VIBHA N,N-DIACETYLOUTOBIASE PRECURSOR VIBRIO HARVEYI 21-48 772-799 PCHEA_BACSU CHEMOTAXIS PROTEIN CHEA BACILLUS SUBTILIS 373-400 590-617 PCHEA_ECOLI CHEMOTAXIS PROTEIN CHEA ESCHERICHIA COLI 256-286 PCHEA_SALTY CHEMOTAXIS PROTEIN CHEA SALMONELLA TYPHIMURIUM 162-197 PCHEA_BACSU CHEMOTAXIS PROTEIN BACILLUS SUBTILIS 124-151 METHYLTRANSFERASE PCHEW_ECOLI PURINE-BINDING CHEMOTAXIS PROTEIN ESCHERICHIA COLI 68-115 PCHEW_SALTY PURINE-BINDING CHEMOTAXIS PROTEIN SALMONELLA TYPHIMURIUM 88-115 PCHEY_ECOLI CHEMOTAXIS PROTEIN CHEY ESCHERICHIA COLI 22-49 PCHEY_SALTY CHEMOTAXIS PROTEIN CHEY SALMONELLA TYPHIMURIUM 22-49 PCHI1_BACCI CHITINASE A PRECURSOR BACILLUS CIRCULANS 491-518 566-593 PCHIA_ALTSO CHITINASE A PRECURSOR ALTEROMONAS SP 345-372 PCHIA_SERMA CHITINASE A PRECURSOR SERRATIA MARCESCENS 346-373 PCHID_BACCI CHITINASE D PRECURSOR BACILLUS CIRCULANS 102-161 189-216 PCHIT_SACER CHITINASE SACCHAROPOLYSPORA ERYTHRAEA 92-119 PCHIT_STRPL CHITTINASE 63 PRECURSOR STREPTOMYCES PLICATUS 250-284 PCHMU_BACSU CHORISMATE MUTASE BACILLUS SUBTILIS 3-37 PCHOD_BREST CHOLESTEROL OXIDASE PRECURSOR BREVIBACTERIUM STEROLICUM 263-290 PCHTA_VIBCH CHOLERA ENTEROTOXIN, A VIBRIO CHOLERAE 79-106 CHAIN PRECURSOR PCHVA_AGRTU BETA-(1→2)GLUCAN EXPORT AGROBACTERIUM TUMEFACIENS 4-31 181-208 PROTEIN PCHVE_AGRTU RECEPTOR PROTEIN CHVE AGROBACTERIUM TUMEFACIENS 100-127 PRECURSOR PCIR1_CITFR CITROLYSIN PROTEIN I CITROBACTER FREUNDII 435-462 PCIRA_ECOLI COLICIN I RECEPTOR PRECURSOR ESCHERICHIA COLI 146-173 PCISA_BACSU PUTATIVE DNA RECOMBINASE BACILLUS SUBTILIS 378-405 PCISY_ACIAN CITRATE SYNTHASE ACINETOBACTER ANITRATUM 143-170 PCISY_BACCO CITRATE SYNTHASE BACILLUS COAGULANS 24-51 PCITA_SALTY CITRATE-PROTON SYMPORT SALMONELLA TYPHIMURIUM 154-181 PCITN_KLEPN CITRATE-SODIUM SYMPORT KLEBSIELLA PNEUMONIAE 194-221 PCITN_SALDU CITRATE-SODIUM SYMPORT SALMONELLA DUBLIN 194-221 PCITN_SALPU CITRATE-SODIUM SYMPORT SALMONELLA PULLORUM 194-221 PCLCA_PSEPU CHLOROCATECHOL 1,2-DIOXYGENASE PSEUDOMONAS PUTIDA 13-36 PCLDI_ECOLI CHAIN LENGTH DETERMINANT PROTEIN ESCHERICHIA COLI 133-167 PCLD2_ECOLI CHAIN LENGTH DETERMINANT PROTEIN ESCHERICHIA COLI 178-212 250-277 PCLD_SALTY CHAIN LENGTH DETERMINANT PROTEIN SALMONELLA TYOHIMURIUM 96-127 151-212 PCLOS_CLOHI ALPHA-CLOSTRIPAIN PRECURSOR CLOSTRIDIUM HISTOLYTICUM 30-58 497-524 PCLPA_ECOLI ATP-BINDING SUBUNIT CLPA ESCHERICHIA COLI 655-695 PCLPA_RHOBL CLPA HOMOLOG PROTEIN RHODOPSEUDOMONAS BLASTICA 439-466 PCLPB_BACNO CLPB HOMOLOG PROTEIN BACTEROIDES NODOSUS 116-157 442-476 558-595 PCLPB_ECOLI CLPB PROTEIN ESCHERICHIA COLI 444-489 563-590 PCLPX_AZOVI CLPX HOMOLOG PROTEIN AZOTOBACTER VINELANDII 215-242 332-359 PCLPX_ECOLI ATP-BINDING SUBUNIT CLPX ESCHERICHIA COLI 255-282 PCNI6_ECOLI 2′,3′-CYCLIC-NUC 2′-PHOSPHODIESTERASE ESCHERICHIA COLI 50-77 PRECURSOR PCODA_ECOLI CYTOSINE DEAMINASE ESCHERICHIA COLI 102-129 PCOMI_BACSU A COMPETENCE PROTEIN I BACILLUS SUBTILIS 108-135 186-213 PCOMO_BACSU COMPETENCE REGULATORY PROTEIN BACILLUS SUBTILIS 154-239 PCOP6_STAAU COP-6 PROTEIN STAPHYLOCOCCUS AUREUS 7-53 PCOPB_PSESM COPPER RESISTANCE PROTEIN B PSEUDOMONAS SYRINGAE 140-167 PRECURSOR PCORA_ECOLI MAGNESIUM/COBALT TRANSPORT ESCHERICHIA COLI 134-161 PROTEIN CORA PCORA_SALTY MAGNESIUM/COBALT TRANSPORT SALMONELLA TYPHIMURIUM 134-161 PROTEIN CORA PCOTE_BACSU SPORE COAT PROTEIN E BACILLUS SUBTILIS 42-92 PCOXI_BRAJA CYTOCHROME C OXIDASE POLYPEPTIDE I BRADYRHIZOBIUM JAPONICUM 380-407 PCOXI_PARDE CYTOCHROMB C OXIDASE POLYPEPTIDE I PAPACOCCUS DENITRIFICANS 383-410 PCOXI_RHOSH CYTOCHROME C OXIDASE POLYPEPTIDE I RHODOBACTER SPHAEROIDES 396-423 PCOXX_BACFI OXIDASE ASSEMBLY FACTOR BACILLUS FIRMUS 36-63 PCOXX_BACSU OXIDASE ASSEMBLY FACTOR BACILLUS SUBTILIS 49-76 PCPPB_NEIGO CRYPTIC PLASMID PROTEIN B NEISSERIA GONORRHOEAE 72-99 165-209 PCPSB_ECOLI MANNOSE-1-PHOSPHATE ESCHERICHIA COLI 309-336 GUANYLYLTRANSFERAS PCPSB_SALTY MANNOSE-1-PHOSPHATE SALMONELLA TYPHIMURIUM 311-338 GUANYLYLTRANSFERAS PCPXA_ECOLI SENSOR PROTEIN CPXA ESCHERICHIA COLI 254-281 PCPXG_STRSQ CYTOCHROMB P450 105CI STREPTOMYCES SP 157-184 PCPXJ_SACER 6-DEOXYERYTHRONOLIDE B SACCHAROPOLYSPORA ERYTHRAEA 233-260 (DEB) HYDROXYLASE PP2OI_BACSU CYTOIZHROME P450 109 BACILLUS SUBTILIS 240-283 PCPXN_ANASP PROBABLE CYTOCHROME P450 ANABAENA SP 98-125 PCR27_BACTI 27 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 153-187 PCR27_BACTM 27 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 153-187 PCR4I_BACSH 1.9 KD INSECTICIDAL TOXIN BACILLUS SPHAERICUS 276-308 PCR4Z_BACSH 1.9 KD INSECTICIDAL TOXIN BACILLUS SPHAERICUS 276-308 PCR43_BACSH 41.9 KD INSECTICIDAL TOXIN BACILLUS SPHAERICUS 276-308 PCR7O_BACTD 70 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 207-234 252-279 429-463 PCR7O_BACTO 75 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 57-84 125-159 427-464 PCR70_BACTT 70 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 199-226 244-271 421-455 PCR71_BACTK 70 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 93-133 191-218 552-615 PCR72_BACTI 72 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 74-111 383-414 PCR72_BACTK 70 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 93-133 191-218 225-593 PCR77_BACTI 77 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 308-335 502-529 PCREC_ECOLI SENSOR PROTEIN CREC ESCHERICHIA COLI 103-130 PCRED_ECOLI INNER MEMBRANE PROTEIN CRED ESCHERICHIA COLI 94-121 PCRP_ECOLI CATABOLITE GENE ACTIVATOR ESCHERICHIA COLI & 26-53 127-154 SHIGELLA FLEXNERI PCRP_SALTY CATAIIOLITE GENE ACTIVATOR SALMONELLA TYPHIMURIUM 26-53 127-154 KLEBSIELLA AEROGENES PCRTI_ERWHE PHYTOENE DEHYDROGENASE ERWINIA HERBICOLA 231-258 PCRTI_RHOCA PHYPOENE DEHYDROGENASE RHODOBACTER CAPSULATUS 389-416 PCRTJ_RHOCA CRTJ PROTEIN RHODOBACTER CAPSULATUS 133-160 334-361 431-458 PCRYS_BACTA 132 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 721-755 875-902 PCRYS_BACTB 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 730-771 865-892 1053- 1080 PCRYS_BACTE 133 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 736-770 890-917 PCRYS_BACTI 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 218-252 701-728 775-802 PCRYS_BACTK 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 737-771 865-892 1053- 1080 PCRYS_BACTS 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 736-770 890-917 PCRYT_BACTA 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 730-771 865-892 1053- 1080 PCRYT_BACTE 134 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 745-779 899-926 PCRYT_BACTI 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 217-251 354-384 701-728 775-802 PCRYT_BACTK 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 737-771 865-892 PCRYU_BACTA 135 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 736-770 890-917 PCRYU_BACTI 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 217-251 700-727 774-801 PCRYU_BACTK 131 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 738-772 866-893 1054- 1081 PCRYV_BACTA 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 737-771 865-892 1053- 1080 PCRYV_BACTI 135 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 110-151 745-772 819-846 PCRYV_BACTK 133 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 736-770 890-917 PCRYW_BACTA 130 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 745-779 PCRYW_BACTK 133 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 608-659 662-696 892-919 PCRYX_BACTK 139 KD CRYSTAL PROTEIN BACILLUS THURINGIENSIS 92-119 227-254 605-632 783-817 937-964 PS532_ECOLI CS3 PILI SYNTHESIS 63 KD PROTEIN ESCHERICHIA COLI 42-69 226-253 299-317 344-378 PS33_ECOLI CS3 PILI SYNTHESIS 48 KD PROTEIN ESCHERICHIA COLI 90-117 154-181 208-242 PC534_ECOLI CS3 PILI SYNTHESIS 33 KD PROTEIN ESCHERICHIA COLI 20-47 74-108 PCSG_HALHA CELL SURFACE GLYCOPROTEIN HALOBACTERIUM HALOBIUM 256-283 584-611 PRECURSOR PCSG_HALVO CELL SURFACE GLYCOPROTEIN HALOBACTERIUM VOLCANII 143-170 237-271 PRECURSOR PCSG_METFE CELL SURFACE GLYCOPROTEIN METHANOTHERMUS FERVIDUS 59-107 PRECURSOR PCSG_METSC CELL SURFACE GLYCOPROTEIN METHANOTHERMUS SOCIABILIS 59-107 PRECURSOR PCSOB_ECOLI CS1 FIMBRIAL SUBUNIT B ESCHERICHIA COLI 25-56 PRECURSOR PCTFA_CLOAB COA-TRANSFERASE SUBUNIT A CLOSTRIDIUM ACETOBUTYLICUM 118-145 PCTFB_CLOAB COA-TRANSPERASE SUBUNIT B CLOSTRIDIUM ACETOBUTYLICUM 174-208 PCTRB_NEIME INNER-MEMBRANE NEISSERIA MENINGITIDIS 152-193 PROTEIN CTRB PCTX_PSEAE CYTOTOXIN PRECURSOR PSEUDOMONAS AERUGINOSA 78-115 124-151 160-194 217-251 PCVAA_ECOLI COLICIN V SECRETION PROTEIN CVAA ESCHERICHIA COLI 104-138 163-219 PCVAB_ECOLI COLICIN V SECRETION PROTEIN CVAB ESCHERICHIA COLI 151-178 PCWPM_BACBR MIDDLE CELL WALL PROTEIN BACILLUS BREVIS 197-224 411-438 1010- PRECURSOR 1044 PCWPO_BACER OUTER CELL WALL PROTEIN BACILLUS BREVIS 178-216 560-587 947-988 PRECURSOR PCYAA_BORPE ADENYLATE CYCLASE PRECURSOR BORDETELLA PERTUSSIS 48-75 632-659 962-996 PCYAA_YERIN ADENYLATE CYCLASE YERSINIA INTERMEDIA 343-387 593-620 PCYAB_BORPE CYAB PROTEIN BORDETELLA PERTUSSIS 541-568 PCYAD_BORPE CYAD PROTEIN BORDETELLA PERTUSSIS 178-212 PCYAE_BORPE CYAE PROTEIN BORDETELLA PERTUSSIS 313-340 PCYB_RHOCA CYTOCHROME B RHODOBACTER CAPSULATUS 38-65 PCYDD_ECOLI TRANSPORT PROTEIN CYDO ESCHERICHIA COLI 3-30 382-409 PCYP_NOSSP APOCYTOCHROME P PRECURSOR NOSTOC SP 209-243 PCYMO_ACISP CYCLOHEXANONE MONOOXYGENASE ACINETOBACTER SP 439-473 PCYNT_SYNP7 CARBONIC ANHYDRASE SYNECHOCOCCUS SP 170-200 PCYNX_ECOLI CYNX PROTEIN ESCHERICHA COLI 53-80 PCYOB_ECOLI CYTOCHROME O UBIQUINOL ESCHERICHIA COLI 31-58 OXIDASE SUBUNIT 1 PCYPH_SYNP7 PEPTIDYL-PROLYL CIS-TRANS SYNECHOCOCCUS SP 107-141 ISOMERASE PCYSA_ECOLI SULFATE PERMASE A PROTEIN ESCHERICHIA COLI 164-191 PCYSB_ECOLI CYS REGULON TRANSCRIPTIONAL ESCHERICHIA COLI 3-30 ACTIVATOR PCYSB_SALTY CYS REGULON TRANSCRIPTIONAL SALMONELLA TYPHIMURIUM 3-30 ACTIVATOR PCYSE_ECOLI SERINE ACETYL TRANSFERASE ESCHERICHIA COLI 164-191 PCYSE_SALTY SERENE ACETYLTRANSFERASE SALMONELLA TYPHIMURIUM 164-191 PCYSG_ECOLI SIROHEM SYNTHASE ESCHERICHIA COLI 405-432 PCYSG_SALTY SIROHEM SYNTHASE SALMONELLA TYPHINIURIUM 405-432 PCYSN_ECOLI SULFATE ADENYLATE TRANSPERASE ESCHERICHIA COLI 64-91 SUBUNIT I PCYSW_ECOLI SULFATE PERMEASE W PROTEIN ESCHERICHIA COLI 201-228 PCYSW_SYNP7 SULFATE PEAMEASE W PROTEIN SYNECHOCOCCUS SP 211-238 PCZCB_ALCEU CATION EFFLUX SYSTEM PROTEIN CZCB ALCALIGENES EUTROPHUS 241-268 283-320 364-391 PCZCB_ALCEU CATION EFFLUX SYSTEM PROTEIN CZCD ALCALIGENES EUTROPI4US 139-169 PDACD_BACSU PENICILLIN-BINDING PROTEIN BACILLUS SUBTILIS 80-107 5* PRECURSOR PDADA_ECOLI D-AMINO ACID DEHYDROGENASE ESCHERICHIA COLI 127-154 PDAGA_ALTHA NA(+)-LINKED D-ALANINE GLYCINE ALTEROMONAS HALOPLANKTIS 332-373 PERMEASE PDAMX_ECOLI DAMX PROTEIN ESCHEIUCHIA COLI 68-95 349-380 PDAPA_ECOLI DIHYDRODIPICOLINATE SYNTHASE ESCHERICHIA COLI 27-54 157-184 PDATI_BACSU DNA-PROTEIN-CYSTEINE BACILLUS SUBTILIS 13-47 METHYLTRANSFERASE PDBHA_ECOLI DNA-BINDING PROTEIN HU-ALPHA ESCHERICHIA COLI 12-39 PDBH_CLOPA DNA-BINDING PROTEIN HU CLOSTRODIUM PASTEURIANUM 12-53 PDCAM_ECOLI DECARBOXYLASE PROENZYME ESCHERICHIA COLI 146-173 PDCDA_CORGL DIAMINOPIMELATE DECARBOXYLASE CORYNEBACTERIUM GLUTMICUM 134-161 PDCDA_PSEAE DIAMINOPIMELATE DECARBOXYLASE PSEUDOMONAS AERUGINOSA 57-84 PDCEB_ECOLI GLUTAMATE DECARBOXYLASE BETA ESCHERICHIA COLI 4-31 PDCHS_ENTAE HISTIDINE DECARBOXYLASE ENTEROBACTER AEROGENES 111-138 P0045_KLEPL HISTIDINE DECARBOXYLASE KLEBSIELLA PLANTICOLA 111-138 P0045_MORMO HISTIDINE DECARBOXYLASE MORGANELA MORGANII 111-138 PDCID_BACSU DIPEPTIDE TRANSPORT PROTEIN BACILLUS SUBTILIS 188-222 PDCLY_HAFAL LYSINE DECCARBOXYLASE HAFNIA ALVEI 305-332 PDCOA_KLEPN OXALOACETATE DECARBOXYLASE KLEBSIELLA PNEUMONIAE 261-288 342-369 ALPHA CHAIN PDCOA_SALTY OXALOACETATE DECARBOXYLASE SALMONELLA TYPHIMURIUM 261-288 342-369 ALPHA CHAIN PDCOB_SALTY OXALOACETATE DECARBOXYLASE SALMONELLA TYPHIMURIUM 299-326 BETA CHAIN PDCTB_RHILE TRANSPORT SENSOR PROTEIN DCTB RHIZOBIUM LEGUMINOSARUM 377-411 POCTB_RHIME TRANSPORT SENSOR PROTEIN DCTB RHIZOBIUM MELILOTI 511-338 PDEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD ESCHRIPCHIA COLI 268-295 518-545 PDEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD KLEBSIELLA PNEUMONIAE 267-294 519-546 PDEDA_ECOLI DEDA PROTEIN ESCHERICHIA COLI 106-133 POEGS_BACSU SENSOR PROTEIN DEGS BACILLUS SUBTILIS 31-70 75-159 292-327 PDE8I_MORSP HALOACETATE DEHALOGENASE H-2 MORAXELLA SP 114-141 PDEOC_ECOLI DEOXYRIBOSE-PHOSPHATE ALDOLASE ESCHERICHIA COLI 134-161 PDHAL_PSEOL ALDEHYDE DEHYDROGENASE PSEUDOMONAS OLEOVORANS 6-33 PDHAS_BACSU ASPARTATE-SEMIALDEHYDE BACILLUS SUBTILIS 150-184 DEHYDROGENASE PHDAS_CORGL ASPARTATE-SEMIALDEHYDE CORYNEBACTERIUM GLUTMICUM 42-70 312-339 DEHYDROGENASE PDHAS_ECOLI ASPARTATE-SEMIALDEHYDE ESCHERICHIA COLI 229-256 DEHYDROGENASE PDHAS_VIBCH ASPARTATE-SEMIALDEHYDE VIBRIO CHOLERAE 309-336 DEHYDROGENASE PDHA_BACSH ALANINE DEHYDROGENASE BACILLUS SPHAERICUS 149-176 PDHA_BACST ALANINE DEHYDROGENASE BACILLUS STEAROTHERMOPHILUS 94-121 PDHE2_CLODI NAD-SPECIFIC GLUTAMATE CLOSTRIDIUM DIFFICILE 116-143 DEHYDROGENASE PDHE2_PEPAS D-SPECIFIC GLUTAMATE PEPTOSTREPTOCOCCUS 247-274 345-380 DEHYDROGENASE ASACCHAROLYTICUS PDHE3_SULSO GLUTAMATE DEHYDROGENASE SULFOLOBUS SOLFATARICUS 2-36 PDHE4_CORGL NADP-SPECIFIC GLUTAMATE CORYNEBACTERIUM GLUTMICUM 188-215 229-256 DEHYDROGENASE PDHGA_ACICA GLUCOSE DEHYDROGENASE-A ACINETOBACTER CALCOACETICUS 10-59 190-217 PDHGB_BACME GLUCOSE I-DEHYDROGENASE B BACILLUS MEGATERIUM 27-57 PDHG_ECOLI GLUCOSE DEHYDROGENASE ESCHERICHIA COLI 436-463 PDHK1_STRVN KETOACYL REDUCTASE 1 STREPTOMYCES VIOLACEORUBER 168-195 PDHLE_BACST LEUCINE DEHYDROGENASE BACILLUS STEAROTHERMOPHILUS 192-219 PDHLO_AGRT4 D-LYSOPINE DEHYDROGENASE AGROBACTERIUM TUMEFACIENS 317-344 PDHM1_METEX METHANOL DEHYDROGENASE METHYLOBACTERIUM EXTORQUENS 153-187 190-224 SUBUNIT 1 PREC PDHM1_METOR METHANOL DEHYDROGENASE METHYLOBACTERIUMORGANOPHILUM 153-187 190-224 SUBUNIT 1 PREC PDHM1_PARDE METHANOL DEHYDROGENASE PARACOCCUS DENITRIFICANS 195-222 SUBUNIT 1 PREC PDHNA_BACSP NADH DEHYDROGENASE BACILLUS SP 284-314 PDHNA_ECOLI NADH DEHYDROGENASE ESCHERICHIA COLI 180-214 PDHOM_BACSU HOMOSERINE DEHYDROGENASE BACILLUS SUBTILIS 73-107 406-433 PDHOM_CORGL HOMOSERINE DEHYDROGENASE CORYNEBACTERIUM GLUTMICUM 105-132 PDHPH_BACSH PHENYLALANINE DEHYDROGENASE BACILLUS SPHAERICUS 212-239 PDHSA_ECOLI SUCC DEHYDROGENASE ESCHERICHIA COLI 482-512 FLAVOPROTEIN SUBUNIT PDHSS_ANACY SOLUBLE HYDROGENASE 42 KD ANABAENA CYLINDRICA 86-113 130-168 SUBUNIT PDHSS_SYNP1 SOLUBLE HYDROGENASE, SMALL SYNECHOCOCCUS SP 133-160 SUBUNIT PDHTM_METME TRIMETHYLAMINE DEHYDROGENASE METHYLOTROPHUS METHYLOPHILUS 439-466 PDING_ECOLI PROBABLE ATP-DEPENDENT HELICASE ESCHERICHIA COLI 584-611 DING PDIVB_BACSU DIVISION INITIATION PROTEIN BACILLUS SUBTILIS 54-82 114-141 PDLD3_PSEPU DIHYDROLIPOAMIDE DEHYDROGENASE PSEUDOMONAS PUTIDA 93-120 PDLDH_AZOVI LIPOAMIDE DEHYDROGENASE AZOTOBACTER VINELANDII 18-45 224-276 COMP (EJ) PDLDH_BACST LIPOAMIDE DEHYDROGENASE BACILLUS STEAROTHERMOPHILUS 82-124 COMP (EJ) PDLDH_BACSU LIPOAMIDE DEHYDROGENASE BACILLUS SUBTILIS 82-109 COMP (EJ) PDLDH_ECOLI DIHYDROLIPOAMIDE DEHYDROGENASE ESCHERICHIA COLI 108-135 PDLDH_PSEFL DIHYDROLIPOAMIDE DEHYDROGENASE PSEUDOMONAS FLUORESCENS 124-151 223-275 PDMPN_PSEPU PHENOL HYDROXYLASE P3 PSEUDOMONAS PUTIDA 63-90 PROTEIN PDNA1_BACSU DNAK PROTEIN BACILLUS SUBTILIS 497-524 548-581 PDNA2_BACSU DNAK PROTEIN BACILLUS SUBTILIS 456-483 PDNAA_BACSU DNAA PROTEIN BACILLUS SUBTILIS 316-380 PDNAA_BORBU DNAA PROTEIN BORRELIA BURGDORFERI 182-216 248-275 341-387 436-463 PDNAA_BUCAP DNAA PROTEIN ESCHERICHIA COLI 366-400 PDNAA_MICLU DNAA PROTEIN MICROCOCCUS LUTEUS 385-415 PDNAA_MYCCA DNAA PROTEIN MYCOPLASMA CAPRICOLUM 8-56 75-112 274-310 350-389 PDNAA_PROMI DNAA PROTEIN PROTEUS MIRABILIS 365-399 PDNAA_PSEPU DNAA PROTEIN PSEUDOMONAS PUTIDA 398-439 PDNAA_SPICI DNAA PROTEIN SPIROPLASMA CITRI 45-72 76-110 145-180 PDNAB_CHLTR DNAB-LIKE PROTEIN CHLAMYDIA TRACHOMATIS 312-353 PDNAB_ECOLI DNAB PROTEIN ESCHERICHIA COLI 82-109 PDNAB_SALTY DNAB PROTEIN SALMONELLA TYPHIMURIUM 82-109 PDNAC_ECOLI DNAC PROTEIN ESCHERICHIA COLI 146-190 PDNAK_BACME DNAK PROTEIN BACILLUS MEGATERIUM 497-524 548-581 PDNAK_BORBU DNAK PROTEIN BORRELIA BURGDORFERI 512-594 PDNAK_BRUOV DNAK PROTEIN BRUCELLA OVIS 248-275 512-546 PDNAK_CAUCR DNAK PROTEIN CAULOBACTER CRESCENTUS 561-588 PDNAK_CLOAB DNAK PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 499-526 PDNAK_CLOPE DNAK PROTEIN CLOSTRIDIUM PERFRINGENS 496-527 PDNAK_METMA DNAK PROTEIN METHANOSARCINA MAZEI 523-550 PDNAK_MYCTU DNAK PROTEIN MYCOBACTERIUM TUBERCULOSIS 502-529 PDNAK_STRCO DNAK PROTEIN STREPTOMYCES COELICOLOR 45-72 533-572 PDNIR_ECOLI REGULATORY PROTEIN DNIR ESCHERICHIA COLI 114-141 PDNLI_ZYMMO DNA LIGASE ZYMOMONAS MOBILIS 658-712 PDNRJ_STRPE TRANSDUCTION PROTEIN DNRJ STREPTOMYCES PEUCETIUS 24-51 PDOCK_SULSO PROBABLE SIGNAL RECOGNITION SULFOLOBUS SOLFATARICUS 104-172 PARTICLE PROTE PDP3A_BACSU DNA POLYMERASE III, ALPHA CHAIN BACILLUS SUBTILIS 58-85 417-444 1382- 1416 PDP3A_ECOLI DNA POLYMEEASE III, ALPHA CHAIN ESCHERICHIA COLI 77-104 PDPIA_SACER DNA POLYMERASE III, ALPHA CHAIN SACCHAROPOLYSPORA ERYTHRAEA 230-257 PDP3A_SALTY DNA POLYMERASE III, ALPHA CHAIN SALMONELLA TYPHIMURIUM 77-104 PDP3B_BACSU DNA POLYMERASE III, BETA CHAIN BACILLUS SUBTILIS 212-239 PDP3B_BORBU DNA POLYMERASE III, BETA CHAIN BORRELIA BURGDORFERI 266-313 PDP3B_BUCAP DNA POLYMERASE III, BETA CHAIN BUCHNERA APHIDICOLA 31-62 308-359 PDP3B_MICLU DNA POLYMERASE III, BETA CHAIN MICROCOCCUS LUTEUS 191-218 PDP3B_MYCCA DNA POLYMERASE III, BETA CHAIN MYCOPLASMA CAPRICOLUM 36-70 PDP3B_PSEPU DNA POLYMERASE III, BETA CHAIN PSEUDOMONAS PUTIDA 30-60 PDP3B_SPICI DNA POLYMERASE III, BETA CHAIN SPIROPLASMA CITRI 78-112 129-177 273-310 PDP3X_BACSU DNA POLYMERASE III SUBUNITS BACILLUS SUBTILIS 231-272 GAMMA AND TAU PDPC2_ECOLI DNA PRIMASE TRAC-2 ESCHERICHIA COLI 691-743 PDPC4_ECOLI DNA PRIMASE TEAC-4 ESCHEPJCHIA COLI 401-448 PDPND_STRPN DPND PROTEIN STREPTOCOCCUS PNEUMONIAE 79-120 PDPOI_BACCA DNA POLYMERASE I BACILLUS CALDOTENAX 208-235 POPOI_STRPN DNA POLYMERASE I STREPTOCOCCUS PNEUMONIAE 198-225 398-425 571-598 645-672 PDPOI_THEAQ DNA POLYMERASE THERMUS AQUATICUS 196-223 602-629 PDPOI_THEFL DNA POLYMERASE THERMUS AQUATICUS 597-628 PDPO2_ECOLI DNA POLYMERASE II ESCNERICHIA COLI 569-596 PDPOL_PYRFU DNA POLYMERASE PYROCOCCUS FURIOSUS 746-773 PDPOL_SULSO DNA POLYMERASE SULFOLOBUS SOLFATARICUS 379-406 436-463 625-659 747-774 PDPOL_THELI DNA POLYMERASE THERMOCOCCUS LITORALIS 332-370 551-589 892-926 1004- 1153- 1031 1194 PDPP_LACLA DIPEPTIDYL PEPTIDASE IV LACTOCOCCUS LACTIS 716-753 PDPP_LACLC DIPEPTIDYL PEPTIDASE IV LACTOCOCCUS LACTIS 716-753 PDPS_ECOLI DNA PROTECTION DURING ESCHERICHIA COLI 4-45 STARVATION PROTEIN PDRNI_STREQ DEOXYRIBONUCLEASE PRECURSOR STREPTOCOCCUS EQUISIMILIS 33-60 291-318 PDRRA_STRPE DAUNORUBICIN RESISTANCE STREPTOMYCES PEUCETIUS 286-313 ATP-BINDING PROTEI PDYRA_STAAU DIHYDROFOLATE REDUCTASE TYPE I STAPHYLOCOCCUS AUREUS 62-89 PEI3B_BACCI GLUCAN ENDO-I,3-BETA- BACILLUS CIRCULANS 134-161 305-339 424-451 GLUCOSIDASE A1 PREC PEAE_ECOLI ATTACHING AND EFFACING PROTEIN ESCHERICHIA COLI 66-100 158-185 525-552 691-725 802-836 871-905 PEBGR_ECOLI EBG OPERON REPRESSOR PROTEIN ESCHERICHIA COLI 151-178 PEBR_STAAU ETHIDIUM BROMIDE RESISTANCE PROTEIN STAPHYLOCOCCUS AUREUS 68-98 PECHH_RHOCA ENOYL-COA HYDRATASE HOMOLOG RHODOBACTER CAPSULATUS 222-249 PECPD_ECOLI CHAPERONE PROTEIN ECPD PRECURSOR ESCHERICHIA COLI 20-47 PEOD_ZYMMO PHOSPHOGLUCONATE DEHYDRATASE ZYMOMONAS MOBILIS 12-39 PEDIN_STAAU EPIDERMAL CELL DIF INN PRECURSOR STAPHYLOCOCCUS AUREUS 52-79 119-146 PEF2_DESMO ELONGATION FACTOR 2 DESULFUROCOCCUS MOBILIS 427-461 PEF2_HALHA ELONGATION FACTOR 2 HALOBACTERIUM HALOBIUM 186-213 PEF2_METVA ELONGATION FACTOR 2 METHANOCOCCUS VANNIELII 409-436 PEF2_SULAC ELONGATION FACTOR 2 SULFOLOBUS ACIDOCALDARIUS 36-63 145-180 PEF2_THEAC ELONGATION FACTOR 2 THERMOPLASMA ACIDOPHILUM 13-40 49-76 220-247 PEFG_ANANI ELONGATION FACTOR G ANACYSTIS NIDULANS 332-359 PEFG_ECOLI ELONGATION FACTOR G ESCHERICHIA COLI 234-261 PEFG_MYCLE ELONGATION FACTOR G MYCOBACTERIUM LEPRAE 211-259 330-357 PEFG_SALTY ELONGATION FACTOR G SALMONELLA TYPHIMURIUM 234-261 PEFG_SPIPL ELONGATION FACTOR G SPIRULINA PLATENSIS 334-374 481-511 PEFG_SYNY3 ELONGATION FACTOR G SYNECHOCYSTIS SP 14-41 PEFT1_STRRA ELONGATION FACTOR TU1 STREPTOMYCES RAMOCISSIMUS 221-258 PEFT2_STRRA ELONGATION FACTOR TU2 STREPTOMYCES RAMOCISSIMUS 221-258 PEFT3_STRRA ELONGATION FACTOR TU3 STREPTOMYCES RAMOCISSIMUS 221-255 PEFTS_ECOLI ELONGATION FACTOR EF-TS ESCHEIUCHIA COLI 101-135 PEFTS_SPICI ELONGATION FACTOR EF-TS SPIROPLASMA CITRI 27-54 134-161 PEFTU_BACFR ELONGATION FACTOR TU BACTEROIDES FRAGILIS 18-45 229-256 PEFTU_BACSU ELONGATION FACTOR TU BACILLUS SUBTILIS 11-45 230-257 PEFTU_BURCE ELONGATION FACTOR TU BUREHOLDEPIA CEPACIA 26-53 PEFTU_CNLTR ELONGATION FACTOR TU CHALMYDIA TRACHOMATIS 218-245 PEFTU_DEISP ELONGATION FACTOR TU DEINONEMA SP 230-257 PEFTU_FLESI ELONGATION FACTOR TU FLEXISTIPES SINUSARABICI 221-248 PEFTU_HALMA ELONGATION FACTOR TU HALOARCULA MARISMORTUI 4-31 PEFTU_MICLU ELONGATION FACTOR TU MICROCOCCUS LUTEUS 221-248 PEFTU_MYCHO ELONGATION FACTOR TU MYCOPLASMA HOMINIS 222-249 PEFTU_MYCLE ELONGATION FACTOR TU MYCOBACTERIUM LEPRAE 220-257 PEFTU_MYCTU ELONGATION FACTOR TU MYCOBACTERIUM TUBERCULOSIS 220-247 PEFTU_SHEPU ELONGATION FACTOR TU SHEWANELLA PUTREFACIENS 26-53 PEFTU_STROR ELONGATION FACTOR TU STREPTOCOCCUS ORALIS 232-259 PELAS_PSEAE PSEUDOLYSIN PRECURSOR PSEUDOMONAS AERUGINOSA 141-168 PETLI_ECOLI T-LABILE ENTEROTOXIN A CHAIN ESCHERICHIA COLI 78-105 PRECURSOR PELT3_ECOLI T-LABILE ENTEROTOXIN A CHAIN ESCHERICHIA COLI 79-106 PRECURSOR PELTB_CLOPE T-LABILE ENTEROTOXIN B CHAIN CLOSTRIDIUM PERFRINGENS 228-269 PRECURSOR PEFTD_ECOLI ENTEROBACTIN SYNTHETASE ESCHERICHIA COLI 154-188 COMPONENT D PENVM_SALTY ENVM PROTEIN SALMONELLA TYPHIMURIUM 34-61 PEPIB_STAEP 117 KD MEMBRANE ASSOCIATED PROTEIN STAPHYLOCOCCUS EPIDERMIDIS 51-80 125-229 290-325 387-421 857-889 PEPIC_STAEP EPIDERMIN BIOSYNTHESIS PROTEIN EPIC STAPHYLOCOCCUS EPIDERMIDIS 411-447 PEPIP_STAEP SERINE PROTEASE EPIP PRECURSOR STAPHYLOCOCCUS EPIDERMIDIS 7-58 297-324 PEPIY_STAEP HYPOTHETICAL 16.7 KD PROTEIN IN STAPHYLOCOCCUS EPIDERMIDIS 70-101 EPIA 5′REGION PEPIZ_STAEP HYPOTHETICAL PROTEIN IN EPIA 5′REGION STAPHYLOCOCCUS EPIDERMIDIS 42-100 PERA_ECOLI GTP-BINDING ERA PROTEIN ESCHERICHIA COLI 18-45 PERBS_SACER SENSORY TRANSDUCTION SACCIIAROPOLYSPORA ERYTHRAEA 209-243 PROTEIN ERYCI PEREA_ECOLI ERYTHRONMYCIN ESTERASE TYPE I ESCHERICHIA COLI 37-64 143-170 PERY3_SACER ERYTHRONOLIDE SYNTHASE, SACCHAROPOLYSPORA ERYTHRAEA 9-36 967-994 1117- MODULES 5 AND 6 1144 PESTA_STRSC ESTERASE PRECURSOR STREPTOMYCES SCABIES 128-155 PESTE_PSEFL ARYLESTERASE PSEUDOMONAS FLUORESCENS 162-189 PETCI_STAAU ENTEROTO7UN TYPE C-1 PRECURSOR STAPHYLOCOCCUS AUREUS 76-117 155-206 PETC2_STAAU ENTEROTOXIN TYPE C-2 PRECURSOR STAPHYLOCOCCUS AUREUS 76-117 155-206 PETC3_STAAU ENTEROTOXIN TYPE C-3 PRECURSOR STAPHYLOCOCCUS AUREUS 76-117 135-206 PETXA_STAAU ENTEROTOXIN TYPE A PRECURSOR STAPHYLOCOCCUS AUREUS 26-69 165-192 PETXD_CLOPE EPSILON-TOXIN, TYPE B PRECURSOR CLOSTRIDIUM PERIRINGENS 209-236 PETXB_STAAU ENTEROTOXIN TYPE B PRECURSOR STAPHYLOCOCCUS AUREUS 64-101 173-207 PETXD_STAAU ENTEROTOXIN TYPE D PRECURSOR STAPHYLOCOCCUS AUREUS 153-200 PETXE_STAAU ENTEROTOXIN TYPE E PRECURSOR STAPHYLOCOCCUS AUREUS 26-69 88-115 PEtTT_SALTY ETHANOLAMINE AMMONIA-LYASE SALMONELLA TYPHIMURIUM 116-150 LIGHT CHAIN PEVGA_ECOLI PUTATIVE TRANSCRIPTION REG ESCHERICHIA COLI 62-89 PEVGS_ECOLI PUTATIVE SENSOR PROTEIN EVGS ESCHERICHIA COLI 45-79 249-276 431-458 526-553 829-856 PEXSB_ECOLI EXODEOXYRIBONUCLEASE V ESCHERICHIA COLI 226-253 PEXEB_ECOLI BIOPOLYMPA TRANSPORT EXBB PROTEIN ESCHERICHIA COLI 80-107 PEXOA_RHIME SUCCINOGLYCAN BIOSYNTHESIS RHIZOBIUM MELILOTI 180-207 PROTEIN EXOA PEXOA_STRPN EXODEOXYRIBONUCLEASE STREPTOCOCCUS PNEUMONIAE 218-254 PEXOF_RHIME EXOF PROTEIN RHIZOBIUM MELILOTI 236-270 327-361 PEXOH_RHIME SUCCINOGLYCAN BIOSYNTHESIS RHIZOBIUM MELILOTI 252-279 PROTEIN EXOH PEXOP_RHIME SUCCINOGLYCAN BIOSYNTHESIS RHIZOBIUM MELILOTI 211-242 272-299 350-391 PROTEIN EXOP PFADB_ECOLI FATTY OXIDATION COMPLEX ESCHERICHIA COLI 36-63 177-204 ALPHA SUBUNIT PFADL_ECOLI FATTY ACID TRANSPORT ESCHERCICHIA COLI 220-247 PROTEIN PRECURSOR PFAED_ECOLI OUTER MEMBRANE PROTEIN ESCHERICHIA COLI 223-257 421-453 507-541 FAED PRECURSOR PFAEF_ECOLI K88 MINOR FIMBRIAL ESCHERICHIA COLI 18-48 SUBUNIT PRECURSOR PFAND_ECOLI FAND PROTEIN PRECURSOR ESCHERICHIA COLI 160-194 386-423 596-623 730-757 PFANE_ECOLI CHAPERONE PROTEIN FANE PRECURSOR ESCHERICHIA COLI 22-58 PFANG_ECOLI FANG PROTEIN PRECURSOR ESCHERICHIA COLI 104-131 PFANH_ECOLI FANH PROTEIN PRECURSOR ESCHERICHIA COLI 83-141 PFAOB_PSEFR FATTY OXIDATION COMPLEX PSEUDOMONAS FRAGI 8-42 295-322 ALPHA SUBUNIT PFDHD_WOLSU FDHD PROTEIN WOLINELLA SUCCINOGENES 64-98 PFDHF_ECOLI FORMATE DEHYDROGENASE ESCHERICHIA COLI 613-640 PFDH_PSESR FORMATE DEHYDROGENASE PSEUDOMONAS SP 49-76 366-393 PFDNG_ECOLI FORMATE DEHYDROGENASE ESCHERICHIA COLI 288-315 323-350 696-730 PFECA_ECOLI TRANSPORT PROTEIN FECA ESCHERICHIA COLI 531-561 PRECURSOR PFECC_ECOLI TRANSPORT PROTEIN I, ESCHERICHIA COLI 210-237 CYTOSOLIC PFECI_ECOLI FECI PROTEIN ESCHERICHIA COLI 131-158 PFEMB_STAAU POSSIBLE PROTEIN FEMB STAPHYLOCOCCUS AUREUS 22-56 PFERN_SYNP2 FERREDOXIN-NADP REDUCTASE SYNECHOCOCCUS SP 4-31 PFEPC_ECOLI FERRIC ENTEROBACTIN TRANSPORT ESCHERICHIA COLI 176-203 PROTEIN FEPC PFEPE_ECOLI FERRIC ENTEROBACTIN TRANSPORT ESCHERICHIA COLI 182-234 281-308 PROTEIN FEPG PFEPG_ECOLI FERRIC ENTEROBACTIN TRANSPORT ESCHERICHIA COLI 128-155 PROTEIN FEPG PFERH_ANASP FERREDOXIN, HETEROCYST ANABAENA SP 2-29 PFERX_ANASP FERREDOXIN-LIKE PROTEIN IN ANABAENA SP 67-94 NIF REGION PFHAB_BORPE FILAMENTOUS HEMAGGLUTININ BORDETELLA PERTUSSIS 1128- 1159- 2063- 2841- 3051- 3167- 1158 1386 2114 2868 3051 3194 PFHAC_BORPE HAEMOLYSIN-LIKE PROTEIN FHAC BORDETELLA PERTUSSIS 342-369 PRECURSOR PFHLA_ECOLI FORMATE HYOROCENLYASE ESCHERICHIA COLI 36-63 350-384 401-428 TRANSACTIVATOR PFHUA_ECOLI FERRICHROME-IRON ESCHERICHIA COLI 458-485 RECEPTOR PRECURSOR PFHUB_ECOLI PROTEIN FMUB PRECURSOR ESCHERICHIA COLI 227-254 PFHUE_ECOLI OUTER-MEMBRANE RECEPTOR ESCHERICHIA COLI 587-614 PFIB_SPICI FIBRIL PROTEIN SPIROPLASMA CITRI 161-195 326-367 PFIC_ECOLI CELL FILAMENTATION PROTEIN FIC ESCHERICHIA COLI 151-178 PFIC_SALTY CELL FILAMENTATION PROTEIN FIC SALMONELLA TYPHIMURIUM 151-178 PFIMC_BORPE OUTER MEMBRANE PROTEIN PRECURSOR BORDETELLA PERTUSSIS 208-235 540-567 618-645 PFIMC_ECOLI CHAPERONE PROTEIN PRECURSOR ESCHERICHIA COLI 51-78 PFIMD_ECOLI FIMD PROTEIN PRECURSOR ESCHERICHIA COLI 222-253 458-485 534-561 563-590 PFIME_ECOLI TYPE I FIMBRIAE REGULATORY ESCHERICHIA COLI 165-192 PROTEIN FIME PFIMY_SALTY FIMBRIAE Y PROTEIN SALMONELLA TYPHIMURIUM 49-76 PFIMZ_ECOLI FIMBRIAE Z PROTEIN ESCHERICHIA COLI 42-69 162-192 196-230 PFIMZ_SALTY FIMBRIAE Z PROTEIN SALMONELLA TYPHIMURIUM 175-209 PFINQ_ECOLI FINQ PROTEIN ESCHERICHIA COLI 145-172 PFIRA_RICRI FIRA PROTEIN RICKETTSIA RICKETTSII 162-189 PFIXC_AZOCA FIXC PROTEIN AZORHIZOBIUM CAULINODANS 129-156 PFIXL_AZOCA SENSOR PROTEIN FIXL AZORHIZOBIUM CAULINODANS 247-274 PFIXL_BRAJA SENSOR PROTEIN FIXL BRADYRHIZOBIUM JAPONICUM 27-54 253-280 PFLAI_BORBU FLAGELLAR FILAMENT 41 KD CORE BORRELIA BURODORFERI 8-35 271-298 PROTEIN PFLAI_HALHA FLAGELLIN A1 PRECURSOR HALOBACTEPIUM HALOBIUM 63-92 157-184 PFLAI_METVO FLAGELLIN B1 PRECURSOR METHANOCOCCUS VOLTAE 28-73 133-160 PFLA2_METVO FLAGELLIN B2 PRECURSOR METHANOCOCCUS VOLTAE 28-66 PFLA3_HALHA FLAGELLIN B1 PRECURSOR HALOBACTERIUM HALOBIUM 36-63 PFLA3_METVO FLAGELLIN B3 PRECURSOR METHANOCOCCUS VOLTAE 35-76 PFLA4_HALHA FLAOELLIN B2 PRECURSOR HALOBACTERIUM HALOBIUM 36-90 157-184 PFLAS_HALHA FLAGELLIN B3 PRECURSOR HALOBACTERIUM HALOBIUM 36-63 154-181 PFLA6_BACSU FLAA LOCUS 22.9 KD PROTEIN BACILLUS SUBTILIS 73-149 155-186 PFLAA_CAMCO FLAGELLIN A CAMPYLOBACTER COLI 15-42 144-191 497-535 PFLAA_CAMJE FLAGELLIN A CAMPYLOBACTER JEJUNI 220-266 310-337 500-538 PFLAA_METVO FLAGELLIN A PRECURSOR METHANOCOCCUS VOLTAE 28-62 PFLAA_PSEAE FLAGELLIN PSEUDOMONAS AERUGINOSA 3-41 51-88 97-124 PFLAA_RHIME FLAGELLIN RHIZOBIUM MELILOTI 181-219 228-265 360-391 PFLAA_SPIAU FLAGELLAR FILAMENT PROTEIN SPIROCHAETA AURANTIA 162-189 PRECURSOR PFLAA_TREHY FLAGELLAR FILAMENT PROTEIN TREPONEMA HYODYSENTERIAE 55-89 219-285 PRECURSOR PFLAA_TREPA FLAGELLAR FILAMENT OUTER TREPONEMA PALLIDUM 243-270 LAYER PROTEIN PELAB_CAMCO FLAGELLIN B CAMPYLOBACTER COLI 144-191 497-535 PFLAB_CAMIE FLAGELLIN B CAMPYLOBACTER JEJUNI 220-266 310-337 500-538 PFLAB_RHIME FLAGELLIN RHIZOBIUM MELILOTI 86-113 177-219 228-255 360-391 PFLAV_CLOMP FLAVODOXIN CLOSTRIDIUM SP 18-52 PFLAY_CAUCR REGULATORY PROTEIN FLAY CAULOBACTER CRESCENTUS 291-318 551-578 PFLA_BACSU FLAGELLIN BACILLUS SUBTILIS 102-129 228-255 PFLGG_BACSU FLAGELLAR BASAL-BODY ROD PROTEIN BACILLUS SUBTILIS 62-89 PFLGK_SALTY FLAGELLAR HOOK-ASSOCIATED SALMONELLA TYPHIMURIUM 12-50 333-360 456-540 PFLGL_ECOLI FLAGELLAR HOOK-ASSOCIATED ESCHERICHIA COLI 61-105 229-266 PFLGL_SALTY FLAGELLAR HOOK-ASSOCIATED SALMONELLA TYPHIMURIUM 61-105 229-266 PFLHD_ECOLI FLAGELLAR TRANSCRIPTIONAL ESCHERICHIA COLI 6-33 ACTIVATOR FLHD PFLIA_PSEAE FLAGELLAR OPERON RNA POL PSEUDOMONAS AERUGINOSA 198-232 SIGMA FACTOR PFLIC_ECOLI FLAGELLIN ESCHERICHIA COLI 3-41 186-213 295-329 431-466 PFLIC_SALCH FLAGELLIN SALMONELLA CHOLERAE-SUIS 5-41 54-125 136-198 PFLIC_SALMU FLAGELLIN SALMONELLA MUENCHEN 5-41 54-88 136-177 232-259 272-299 376-403 PFLIC_SALPA FLAGELLIN SALMONELLA PARATYPHI-A 5-41 54-125 136-184 PFLIC_SALRU FLAGELLIN SALMONELLA RUBISLAW 5-41 54-125 136-196 PFLIC_SALTY FLAGELLIN SALMONELLA TYPHIMURIUM 5-41 54-125 136-200 PFLIC_SERMA FLAGELLIN SERRATIA MARCESCENS 15-42 55-89 103-130 137-164 275-321 PFLID_ECOLI FLAGELLAR HOOK-ASSOCIATED ESCHERICHIA COLI 32-66 106-133 160-187 216-298 386-445 PROTEIN 2 PFLID_SALTY FLAGELLAR HOOK-ASSOCIATED SALMONELLA TYPHIMURIUM 32-66 106-133 255-299 407-438 PROTEIN 2 PFLIE_BACSU FLAG HOOK-BASAL BODY PROTEIN BACILLUS SUBTILIS 8-35 FLIE PFLIF_BACSU FLAGELLAR M-RING PROTEIN BACILLUS SUBTILIS 327-361 391-418 PFLIF_CAUCR FLAGELLAR M-RING PROTEIN CAULOBACTER CRESCENTUS 24-51 297-324 361-388 PFLIF_SALTY FLAGELLAR M-RING PROTEIN SALMONELLA TYPHIMURIUM 484-529 PFLIG_BACSU FLAGELLAR SWITCH PROTEIN BACILLUS SUBTILIS 35-62 PPLIG_ECOLI FLAGELLAR SWITCH PROTEIN ESCHERICHIA COLI 44-71 PFLIH_BACSU PROBABLE FLIH PROTEIN BACILLUS SUBTILIS 19-46 105-132 PPLIJ_BACSU PLAGELLAR FLIH PROTEIN BACILLUS SUBTILIS 7-37 PPLIJ_SALTY FLAGELLAR FLIJ PROTEIN SALMONELLA TYPHIMURIUM 75-118 PFLIK_BACSU PROBABLE FLIK PROTEIN BACILLUS SUISPILIS 77-104 117-144 PPLIL_BACSU FLIL PROTEIN BACILLUS SUBTILIS 30-71 78-105 109-136 PFLIL_ECOLI FLIL PROTEIN ESCHERICHIA COLI 105-132 PPLIL_SALTY FLIL PROTEIN SALMONELLA TYPHIMURIUM 103-133 PFLIM_BACSU FLIM PROTEIN BACILLUS SUBTILIS 148-175 PFLIM_ECOLI FLIM PROTEIN ESCHERICHIA COLI 251-278 PFLIN_CAUCR FLAGELLAR MOTOR SWITCH PROTEIN CAULOBACTER CRESCENTUS 56-83 PFLIS_ECOLI FLAGELLAR PROTEIN FLIS ESCHERICHIA COLI 59-86 PELIT_SALTY FLAGELLAR PROTEIN FLIT SALMONELLA TYPHIMURIUM 9-46 67-106 PFMI2_PSEAE FIMBRIAL PROTEIN PRECURSOR PSEUDOMONAS AERUGINOSA 30-67 80-114 PFMIA_ECOLI TYPE-I FIMBRIAL PROTEIN, ESCHERICHIA COLI 5-32 A CHAIN PRECURSOR PFMIC_ECOLI TYPE-I FIMBRIAL PROTEIN, ESCHERICHIA COLI 11-38 C CHAIN PRECURSOR PFMI_ACTVI FIMBRIAL SUBUNIT TYPE I PRECURSOR ACTINOMYCES VISCOSUS 248-282 352-379 417-444 PFM98_ECOLI FIMBRIAL PROTEIN 987P PRECURSOR ESCHERICHIA COLI 114-141 PPMA0_BACNO FPIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 110-137 PFMA1_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 107-134 PFMA2_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 107-134 PFMA7_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 110-137 PFMAA_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 123-150 PPMAF_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 107-141 PPMAH_BACHO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 95-122 PPMAI_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 111-145 PPMAJ_BACNO FIMBRIAL PROTEIN PRECURSOR BACTEROIDES NODOSUS 96-123 PFMCD_PSEAE FIMBRIAL PROTEIN PRECURSOR PSEUDOMONAS AERUGINOSA 70-97 PFMDD_BACNO POSSIBLE FIMBRIAL ASSEMBLY BACTEROIDES NODOSUS 106-144 355-382 PROTEIN FIMO PPMDH_BACNO POSSIBLE FIMBRIAL ASSEMBLY BACTEROIDES NODOSUS 106-144 355-382 PROTEIN FIMO PFMF3_ECOLI F17 FIMBRIAL PROTEIN PRECURSOR ESCHERICHIA COLI 97-124 PFMM1_NEIME PIMBRIAL PROTEIN PRECURSOR NEISSERIA MENINGITIDIS 70-97 PFMM2_NEIGO FIMBRIAL PROTEIN PRECURSOR NEISSERIA GONORRHOEAE 66-97 PFMM_MORNO FIMBRIAL PROTEIN PRECURSOR MORAXELLA NONLIQUEPACIENS 108-146 PFMPI_PSEAE FIMBRIAL PROTEIN PRECURSOR PSEUDOMONAS AERUGINOSA 30-67 80-114 PPMSI_PSEAE FIMBRIAL PROTEIN PRECURSOR PSEUDOMONAS AERUGINOSA 70-97 PPMSI_ECOLI CS1 FIMBRIAL SUBUNIT A PRECURSOR ESCHERICHIA COLI 60-87 112-139 PFMS3_ECOLI CS3 FIMBRIAL SUBUNIT A PRECURSOR ESCHERICHIA COLI 49-98 PFM_HAEIN MAJOR FIMBRIAL SUBUNIT PRECURSOR HAEMOPHILUS INFLUENZAE 102-129 PFNBA_STAAU FIBRONECTIN-BINDING PROTEIN STAPHYLOCOCCUS AUREUS 41-83 188-215 311-365 431-458 517-555 652-686 722-756 PRECURSOR PFOLC_ECOLI FOLYLPOLYGLUTAMATE SYNTHASE ESCHERICHIA COLI 125-159 PPOLC_LACCA FOLYLPOLYGLUTAMATE SYNTHASE LACTO BACILLUS CASEI 129-156 PFPG_BACPI PORMAMIDOPYRIMIDINE-DNA BACILLUS FIRMUS 153-180 GLYCOSYLASE PFRDA_ECOLI FUMARATE REDUCTASE FLAVOPROTEIN ESCHERICHIA COLI 395-422 SUBUNIT PFRDA_WOLSU FUMARATE REDUCTASE FLAVOPROTEIN WOLINELLA SUCCINOGENES 8-35 487-514 SUBUNIT PFRZE_MYXXA GLIDING MOTILITY REGULATORY MYXOCOCCUS XANTHUS 15-42 478-505 PROTEIN PFTHS_CLOTH FORMATE-TETRAHYDROFOLATE CLOSTRIDIUM THERMOACETUM 163-190 LIGASE PFTR_METTH FORMYLTRANSFERASE METHANOBACTERIUM 9-43 THERMOAUTOTROPHICO PFTSA_BACSU CELL DIVISION PROTEIN FTSA BACILLUS SUBTILIS 76-110 PFTSA_ECOLI CELL DIVISION PROTEIN FTSA ESCHERICHIA COLI 301-338 375-418 PFTSJ_ECOLI CELL DIVISION PROTEIN FTSJ ESCHERICHIA COLI 4-31 PFTSL_ECOLI CELL DIVISION PROTEIN FTSL ESCHERICHIA COLI 63-90 PFTSN_ECOLI CELL DIVISION PROTEIN FTSN ESCHERICHIA COLI 151-188 PFTSX_ECOLI CELL DIVISION PROTEIN FTSX ESCHERICHIA COLI 278-305 PFTSY_ECOLI CELL DIVISION PROTEIN PISY ESCHERICHIA COLI 230-260 PFUCR_ECOLI L-FUCOSE OPERON ACTIVATOR ESCHERICHIA COLI 7-45 PFUMA_BACST FUMARATE HYDRATASE CLASS I, BACILLUS STEAROTHERMOPHILUS 290-317 AEROBIC PFUMH_BACSU FUMARATE HYDRATASE BACILLUS SUBTILIS 414-445 PFUR_YERPE FERRIC UPTAKE REGULATION PROTEIN YERSINIA PESTIS 99-130 PG3PI_ECOLI GLYC 3-PHOS DEHYDROGENASE A ESCHERICHIA COLI 302-329 PG3P2_ANAVA GLYC 3-PHOS DEHYDROGENASE 2 ANABAENA VARIABILIS 87-114 PG3P3_ANAVA GLYC 3-PHOS DEHYDROGENASE 3 ANABAENA VARIABILIS 162-119 PG3P2_ECOLI GLYC 3-PHOS DEHYDROGENASE C ESCHERICHIA COLI 236-324 PG3P_BACME GLYC 3-PHOS DEHYDROGENASE BACILLUS MEGATERIUM 49-76 237-271 PG3P_BACSU GLYC 3.PHOS DEHYDROGENASE BACILLUS SUBTILIS 49-76 PG3P_PYRWO GLYC 3-PHOS DEHYDROGENASE PYROCOCCUS WOESEI 259-286 PG3P_THEMA GLYC 3-PHOS DEHYDROGENASE THERMOTOGA MARITIMA 290-328 PG6PB_BACST GLUCOSE-6-PHOSPHATE BACILLUS STEAROTHERMOPHILUS 103-143 241-268 ISOMERASE B PG6PD_ECOLI GLUCOSE-6-PHOSPHATE ESCRERICHIA COLI 301-328 1-DEHYDROGENASE PG6PD_ZYMMO GLUCOSE-4-PHOSPHATE ZYMOMONAS MOBILIS 165-192 I-DEHYDROGENASE PGACA_PSEPL CYANIDE CONTROL PROTEIN PSEUDOMONAS FLUORESCENS 178-205 PGALI_SALTY GALACTOKINASE SALMONELLA TYPHIMURIUM 86-113 PGAL7_HAEIN GAL-1-PHOS URXDTYLYLTRANSFERASE HAEMOPHILUS INELUENZAE 124-136 239-269 POAL7_LACHE GAL-1-PHOS URIDTYLTRANSFERASE LACTO BACILLUS HELVETICUS 304-338 PGALF_SALTY GALACTOSE OPERON REPRESSOR SALMONELLA TYPHIMURIUM 53-91 PGALR_HAEIN GALACTOSE OPERON REPRESSOR HAEMOPHILUS INFLUENZAE 182-209 PGAL_PSEFL DE D-GALACTOSE 1-DEHYDROGENASE PSEUDOMONAS FLUORESCENS 251-271 PGAH2_ECOLI GTP CYCLOHYDROLASE II ESCHERICHIA COLI 78-105 PGCH2_PHOLE GTP CYCLOHYDROLASE II PHOTOBACTERIUM LEIOGNATHI 197-227 246-273 PGCsH_ECOLI GLYCINE CLEAVAGE SYSTEM H PROTEIN ESCHERICHIA COLI 10-37 PGCSP_ECOLI GLYCINE DEHYDROGENASE ESCHERICHIA COLI 216-246 PGCVA_ECOLI GLYCINE CLEAVAGE SYSTEM TRANSACTIVATOR ESCHERICHIA COLI 60-94 PGENK_ECOLI PROTEIN K ESCHERICHIA COLI 24-51 PGERI_BACSU SPORE GERMINATION PROTEIN I BACILLUS SUBTILIS 49-83 182-216 350-384 PGER3_BACSU SPORE GERMINATION PROTEIN III PRECURSOR BACILLUS SUBTILIS 293-323 PGERE_BACSU GERMINATION PROTEIN GERE BACILLUS SUBTILIS 13-40 PGGI2_STAHA ANTIBACTERIAL PROTEIN 2 STAPHYLOCOCCUS HAEMOLYTICUS 6-33 PGG13_STAHA ANTIBACTERIAL PROTEIN 3 STAPHYLOCOCCUS HAEMOLYTICUS 6-33 PGIDA_BACSU GLUCOSE INHIBITED DIVISION PROTEIN A BACILLUS SUBTILIS 396-423 PGIDA_ECOLI GLUCOSE INHIBITED DIVISION PROTEIN A ESCHERICHIA COLI 533-568 PGIDA_PSEPU GLUCOSE INHIBITED DIVISION PROTEIN A PSEUDOMONAS PLITIDA 539-566 PGIDB_BACSU GLUCOSE INHIBITED DIVISION PROTEIN B BACILLUS SUBTILIS 34-61 PGIDB_PSEPU GLUCOSE INHIBITED DIVISION PROTEIN B PSEUDOMONAS PUTIDA 25-52 PGLCP_SYNY3 GLUCOSE TRANSPORT PROTEIN SYNECHOCYSTIS SP 288-322 POLDA_BACST GLYCEROL DEHYDROGENASE BACILLUS STEAROTHERMOPHILUS 20-79 POLGA_ECOLI GLYCOGEN SYNTHASE ESCHERICHIA COLI 256-283 POLOC_ECOLI GLUCOSE-1-PHOSPHATE ESCHERICHIA COLI 114-141 ADENYLYLTRANSFERASE POLGC_SALTY GLUCOSE-1-PHOSPHATE SALMONELLA TYPHIMUPIUM 114-141 ADENYLYLTRANSFERASE PGLMS_ECOLI GLUCFRUC-6-PHOSAMINOTRANSFERASE ESCHERICHIA COLI 209-243 POLNI_METTL GLNB-LDCE PROTEIN 1 METHANOCOCCUS THERMOLITHOTROPHICUS 58-85 PGLNA_ANASP GLUTAMINE SYNTHETASE ANABAENA SP 8-42 PGLNA_CLOAB GLUTAMINE SYNTHETASE BACILLUS SUBTILIS 4-31 PGLNA_ECOLI GLUTAMINE SYNTHETASE ESCHERICHIA COLI 144-171 PGLNA_METVO GLUTAMINE SYNTHETASE METHANOCOCCUS VOLTAE 203-230 PGLNA_PROVU GLUTAMINE SYNTHETASE PROTEUS VULGARIS 142-169 PGLNA_PYRFU GLUTAMINE SYNTHETASE PYROCOCCUS FURIOSUS 391-421 PGLNA_SALTY GLUTAMINE SYNTHETASE SALMONELLA TYPHIMURIUM 144-171 PGLNA_STRCO GLUTAMINE SYNTHETASE STREPTOMYCES COELICOLOR 186-213 PGLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II AZOSPIRILLUM BRASILENSE 15-49 PGLNB_RHOCA NITROGEN REGULATORY PROTEIN P-II RHODOBACTER CAPSULATUS 15-49 PGLNB_SYNP6 NITROGEN REGULATORY PROTEIN P-II SYNECHOCOCCUS SP 52-79 PGLND_ECOLI UDP URIDYLYLTRANSFERASE ESCHERICHIA COLI 20-147 151-178 PGLND_SALTY UDP URIDYLYLTRANSFERASE SALMONELLA TYPHIMURIUM 151-178 POLNE_ECOLI ADENYLYLTRANSFERASE ESCHERICHIA COLI 103-130 433-460 767-790 PGLNH_ECOLI GLUTAMINE-BINDING PROTEIN ESCHERICHIA COLI 126-153 PRECURSOR PGLNQ_BACST GLUTAMINE PERMEASE OPERON BACILLUS STEAROTHERMOPHILUS 7-34 PROTEIN GLNQ PGLPD_BACSU AEROBIC GLYC-3-PHOS DEHYDROGENASE BACILLUS SUBTILIS 194-230 PGLPO_ECOLI AEROBIC GLYC-3-PHOS DEHYDROGENASE ESCHERICOOIA COLI 410-437 PGLPF_BACSU GLYCEROL UPTAKE FACILITATOR BACILLUS SUBTILIS 235-274 PROTEIN PGLPK_BACSU GLYCEROL KINASE BACILLUS SUBTILIS 44-93 PGLPK_ECOLI GLYCEROL KINASE ESCHERICHIA COLI 56-90 PGLPR_ECOLI GLYCEROL-3-PHOSPHATE REGULON ESCHERICHIA COLI 5-32 REPRESSOR PGLPX_ECOLI GLPX PROTEIN ESCHERICHIA COLI 297-324 PGLPX_SHIFL GLPX PROTEIN SHIGELLA FLEXNERI 297-324 PGLRX_ECOLI GLUTAREDOXIN ESCHERICHIA COLI 24-51 PGLTB_ECOLI GLUTAMATE SYNTHASE ESCHERICHIA COLI 482-509 PGLTP_ECOLI PROTON GLUTAMATE SYMPORT PROTEIN ESCHERICHIA COLI 319-346 PGLVB_ECOLI PHOSPHOTRANSFERASE ENZYME ESCHERICHIA COLI 130-157 TYPE-IIB PGLYA_BRAJA SERINE HYDROXYMETHYLTEANSFERASE BRADYRHIZOBIUM JAPONICUM 29-60 PGLYA_CAMIE SERINE HYDROXYMETHYLTRANSFERASE CAMPYLOBACTER JEJUNI 376-403 PGLYA_HYPME SERINE HYDROXYMETHYLTRANSFERASE HYPHOMICROBIUM METHYLOVORUM 28-55 PGMG7_BACSU COMO OPERON PROTEIN 7 BACILLUS SUBTILIS 37-67 88-122 PGNTK_BACSU GLUCONOKINASE BACILLUS SUBTILIS 238-271 PGPID_CHLTR VIRULENCE PROTEIN PGP1-D CHALMYDIA TRACHOMATIS 312-353 PGP2D_CHLTR VIRULENCE PROTEIN PGP2-D CHALMYDIA TRACHOMATIS 97-131 PGP5D_CHLTR VIRULENCE PROTEIN PGP3-D CHALMYDIA TRACHOMATIS 25-52 PGP6D_CHLTR VIRULENCE PROTEIN PGP6-D CHALMYDIA TRACHOMATIS 63-106 193-220 PGP7D_CHLTR VIRULENCE PROTEIN PGP7-D CHALMYDIA TRACHOMATIS 12-60 PGP8D_CHLTR VIRULENCE PROTEIN PGP8-D CHALMYDIA TRACHONIATIS 94-121 PGREA_RICPR TRANSCRIPTION ELONGATION RICKETTSIA PROWAZEKII 15-49 FACTOR GREA PGRPE_BACSU GRPE-LIKE PROTEIN BACILLUS SUBTILIS 27-73 PGRPE_BORBU GRPE-LIKE PROTEIN BORRELIA BURGDORFERJ 2-79 PORPE_QOAB GRPE-LIKE PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 12-83 PORSA_BACER GRAMICIDIN S SYNTHETASE BACILLUS BREVIS 543-572 799-826 840-882 1035- 1062 PGRSE_RACER GRAMICIDIN S SYNTHETASE II BACILLUS BREVIS 48-75 94-121 241-282 1126- 1213- 2162- 2559- 2819- 3606- 1153 1240 2189 2586 2846 3633 PGSHI_ECOLI GLUTAMATE-CYSTEINE LIGASE ESCHERICHIA COLI 239-266 274-301 PGSHR_ECOLI GLUTATHIONE REDUCTASE ESCHERICHIA COLI 100-134 270-311 PGSHR_PSEAE GLUTATHIONE REDUCTASE PSEUDOMONAS AERUGINOSA 80-114 PGSIA_BACSU STARVATION-INDUCIBLE PROTEIN A BACILLUS SUBTILIS 74-101 265-296 PGSPD_ERWCA PROTEIN D PRECURSOR ERWINIA CAROTOVORA 258-285 516-543 589-619 PGSPD_ERWCH PROTEIN D PRECURSOR ERWINIA CHRYSANTHEMI 259-302 307-338 551-578 659-686 PGSPD_KLEPN PROTEIN D PRECURSOR KLEBSIELLA PNEUMONIAE 259-286 PGSPE_ERWCH PROTEIN E ERWINIA CAROTOVORA 329-367 PGSPE_ERWCH PROTEIN E ERWINIA CHRYSANTHEMI 329-367 PGSPE_KLEPN PROTEIN E KLEBSIELLA PNEUMONIAE 323-361 PGSPE_PSEAE PROTEIN E PSEUDOMONAS AERUGINOSA 122-149 331-369 PGSPF_XANCP PROTEIN F XANTHOMONAS CAMPESTRIS 230-257 PGSPH_PSEAE PTOTEIN H PRECURSOR PSEUDOMONAS AERUGINOSA 18-59 PGSPI_AERHY PROTEIN I PRECURSOR AEROMONAS HYDROPHILA 27-61 PGSPI_ERWCA PROTEIN I PRECURSOR ERWINIA CAROTOVORA 35-62 PGSPJ_KLEPN PROTEIN J PRECURSOR KLEBSIELLA PNEUMONIAE 140-167 PGSPK_ERWCA PROTEIN K ERWINIA CAROTOVORA 28-55 PGSPK_ERWCH PROTEIN K ERWINIA CHRYSANTHENI 28-55 PGSPK_KLEPN PROTEIN K KLEBSIELLA PNEUMONIAE 72-99 PGSPK_PSEAE PROTEIN K PSEUDOMONAS AERUGINOSA 262-289 PGSPL_ERWCH PROTEIN L ERWINIA CHRYSANTHEMI 7-42 248-286 331-358 PGSPL_XANCP PROTEIN L XANTHOMONAS CAMPESTRIS 39-73 297-324 PGSPM_ERWCA PROTEIN M ERWINIA CAROTOVORA 108-145 PGSQD_ERWCH PROTEIN D PRECURSOR ERWINIA CHRYSANTHEMI 259-302 448-475 546-573 657-684 PGTF1_STRDO GLUCOSYLTRANSFERASE-1 PRECURSOR STREPTOCOCCUS DOWNEI 42-69 177-204 212-239 464-491 1382- 1495- 1416 1529 PGTF2_STRDO GLUCOSYLTRANSFERASE-I PRECURSOR STREPTOCOCCUS DOWNEI 171-198 206-233 458-485 1382- 1497- 1412 1524 PGTFA_STRMU GLUCOSYLTRANSFERASE-S STREPTOCOCCUS MUTANS 297-350 PGTFB_STRMU GLUCOSYLTRANSFERASE-I PRECURSOR STREPTOCOCCUS MUTANS 42-93 110-137 161-188 199-246 313-347 592-627 PGTFC_STRMU GLUCOSYLTRANSFERASE-SI PRECURSOR STREPTOCOCCUS MUTANS 4-40 110-138 235-262 330-361 614-653 PGTFS_STRDO GLUCOSYLTRANSFERASE-S PRECURSOR STREPTOCOCCUS DOWNEI 275-316 436-463 1281 1315 PGTMR_METTF POSSIBLE G-T MISMATCHES REPAIR METHANOBACTERIUM 80-107 148-175 ENZYME THERMOFORMICICUM PGUAA_BACSU GMP SYNTHASE BACILLUS SUBTILIS 314-348 399-436 478-505 PGUAA_ECOLI GMP SYNTHASE ESCHERICHIA COLI 105-132 PGUB_BACCI BETA-GLUCANASE PRECURSOR BACILLUS CIRCULANS 164-191 PGUB_BACLI BETA-GLUCANASE PRECURSOR BACILLUS LICHENIFORMIS 132-166 PGUB_BACMA BETA-GLUCANASE PRECURSOR BACILLUS MACERANS 126-160 PGUN1_BACS4 ENDOGLUCANASE A BACILLUS SP 18-49 PGUN1_BACSU ENDOGLUCANASE PRECURSOR BACILLUS SUBTILIS 270-304 376-403 PGUN1_BUTFI ENDOGLUCANASE I BUTYRIVIBRIO FIBRISOLVENS 154-181 452-495 PGUN2_BACSU ENDOGLUCANASE PRECURSOR BACILLUS SUBTILIS 270-304 PGUN2_THEFU ENDOGLUCANASE E-2 PRECURSOR THERMOMONOSPORA FUSCA 201-228 PGUN3_BACS4 ENDOGLUCANASE C PRECURSOR BACILLUS SP 110-137 348-378 538-565 PGUN3_BACSU ENDOGLUCANASE PRECURSOR BACILLUS SUBTILIS 270-304 PGUN3_FIBSU ENDOGLUCANASE 3 PRECURSOR FIBROBACTER SUCCINOGENES 542-586 PGUN4_THEFU ENDOGLUCANASE E-4 PRECURSOR THERMOMONOSPORA FUSCA 308-342 PGUN5_THEFU ENDOGLUCANASE E-5 PRECURSOR THERMOMONOSPORA FUSCA 44-71 PGUNA_BACLA ENDOGLUCANASE A PRECURSOR BACILLUS LAUTUS 410-437 454-481 PGUNA_CLOTM ENDOGLUCANASE A PRECURSOR CLOSTRIDIUM THERMOCELLUM 354-384 PGUNA_PSEFL ENDOGLUCANASE A PRECURSOR PSEUDOMONAS FLUORESCENS 762-789 PGUNA_RUMAL ENDOGLUCANASE A RUMINOCOCCUS ALBUS 294-321 PGUNA_RUMFL CELLODEXTRINASE A RUMINOCOCCUS FLAVEFACIENS 276-303 PGUNB_BACLA ENDOGLUCANASE B PRECURSOR BACILLUS LAUTUS 375-450 PGUNB_CALSA ENDOGLUCANASE B CALDOCELLUM SACCHAROLYTICUM 151-182 444-478 PGUNB_CELFI ENDOGLUCANASE B PRECURSOR CELLULOMONAS FIMI 266-293 PGUNB_CLOCL ENDOGLUCANASE B PRECURSOR CLOSTRIDIUM CELLULOVORANS 144-171 266-300 PGUNB_CLOTM ENDOGLUCANASE B PRECURSOR CLOSTRIDIUM THERMOCELLUM 514-541 PGUNC_CELFI ENDOGLUCANASE C PRECURSOR CELLULOMONAS FIMI 881-908 PGUNC_PSEFL ENDOGLUCANASE C PRECURSOR PSEUDOMONAS FLUORESCENS 52-82 PGUND_CLOCE ENDOGLUCANASE D PRECURSOR CLOSTRIDIUM CELLULOLYTICUM 382-453 PGUND_CLOCL ENDOGLUCANASE D PRECURSOR CLOSTRIDIUM CELLULOLYTICUM 145-172 271-298 PGUNE_CLOTM ENDOGLUCANASE E PRECURSOR CLOSTRIDIUM THERMOCELLUM 158-185 207-234 284-311 PGUNH_CLOTM ENDOGLUCANASE H PRECURSOR CLOSTRIDIUM THERMOCELLUM 46-73 425-452 PGUNS_ERWCA ENDOGLUCANASE PRECURSOR ERWINIA CAROTOVORA 20-47 115-149 PGUNX_CLOTM PUTATIVE ENDOGLUCANASE X CLOSTRIDIUM THERMOCELLUM 105-139 PGUNZ_CLOSR ENDOGLUCANASE Z PRECURSOR CLOSTRIDIUM STERCORARIUM 296-326 522-549 PGUN_BACPO ENDOGLUCANASE BACILLUS POLYMYXA 198-225 PGUN_BACS1 ENDOGLUCANASE PRECURSOR BACILLUS SP 321-348 PGUN_BACS6 ENDOGLUCANASE PRECURSOR BACILLUS SP 198-229 501-528 623-664 PGUTD_ECOLI SORBITOL-6-PHOSPHATE 2- ESCHERICHIA COLI 138-165 DEHYDROGENASE PGPV1_HALHA GAS VESICLE PROTEIN, PLASMID HALOBACTERIUM HALOBIUM 36-63 PGPV2_HALHA GAS VESICLE PROTEIN, HALOBACTERIUM HALOBIUM 36-63 CHROMOSOMAL PGPVA_APHFL GAS VESICLE PROTEIN APHANIZOMENON FLOS-AQUAE 4-31 39-66 PGPVA_FREDI GAS VESICLE PROTEIN FREMYELLA DIPLOSIPHON 4-31 39-66 PGPVA_HALME GAS VESICLE PROTEIN HALOBACTERIUM MEDITERRANEI 37-64 PGPVA_MICBC GAS VESICLE PROTEIN MICROCYSTIS SP 39-66 PGPVA_PSEAN GAS VESICLE PROTEIN PSEUDOANABAENA SP 4-31 39-66 PGPVC_APHFL GAS VESICLE PROTEIN C APHANIZOMENON FLOS-AQUAE 8-49 PGPVC_HALHA GAS VESICLE PROTEIN C HALOBACTERIUM HALOBIUM 150-249 PGVPC_HALME GAS VESICLE PROTEIN C HALOBACTERIUM MEDITERRANEI 139-169 PGVPD_HALHA GVPD PROTEIN, PLASMID HALOBACTERIUM HALOBIUM 110-147 PGVPD_HALHE GVPD PROTEIN HALOBACTERIUM MEDITERRANEI 110-147 PGVPF_HALMA GVPF PROTEIN, PLASMID HALOBACTERIUM HALOBIUM 13-47 135-169 PGVPF_HALME GVPF PROTEIN HALOBACTERIUM MEDITERRANEI 13-47 PGVPF_HALSA GYPF PROTEIN HALOBACTEPIUM SALINARIUM 8-49 PGVPG_HALMA GVPG PROTEIN, PLASMID HALOBACTERIUM HALOBIUM 38-65 PGVPG_HALME GVPG PROTEIN HALOBACTERIUM MEDITERRANEI 38-72 PGVPH_HALHA GVPH PROTEIN HALOBACTERIUM HALOBIUM 10-40 PGVPI_HALME GVPI PROTEIN HALOBACTERIUM MEDITERRANEI 5-32 PGVPK_HALHA GVPK PROTEIN HALOBACTERIUM HALOBIUM 45-76 PGVPK_HALME GVPK PROTEIN HALOBACTERIUM MEDITERRANEI 12-39 47-74 PGVPK_HALSA GVPK PROTEIN HALOBACTERIUM SALINARIUM 11-31 50-77 PGVPL_HALME GVPL PROTEIN HALOBACTERIUM MEDITERRANEI 44-78 POVPN_HALHA GVPN PROTEIN HALOBACTERIUM HALOBIUNI 113-140 PGVPN_HALME GVPN PROTEIN HALOBACTERIUM MEDITERRANEI 15-56 PGVPO_HALME GVPO PROTEIN HALOBACTERIUM MEDITERRANEI 69-96 105-132 PGYRA_BACSU DNA GYRASE SUBUNIT A BACILLUS SUBTILIS 380-407 429-499 PGYRA_CAMIE DNA GYRASE SUBUNIT A CAMPYLOBACTERIE JUNI 267-310 381-408 452-479 665-695 PGYRA_ECOLI DNA GYRASE SUBUNIT A ESCHERICHIA COLI 266-293 449-497 PGYRA_KLEPN DNA GYRASE SUBUNIT A KLEBSIELLA PNEUMONIAE 266-293 448-496 518-545 PGYRA_MYCPN DNA GYRASE SUBUNIT A MYCOPLASMA PNEUMONIAE 4-31 PGYRA_STAAU DNA GYRASE SUBUNIT A STAPHYLOCOCCUS AUREUS 129-156 346-373 430-479 647-674 812-839 PGYRA_BACSU DNA GYRASE SUBUNIT B BACILLUS SUBTILIS 198-239 PGYRB_BORBU DNA GYRASE SUBUNIT B BORRELIA BURODORFERI 154-181 PGYRB_ECOLI DNA GYRASE SUBUNIT B ESCHERICHIA COLI 616-643 PGYRB_HALSQ DNA GYRASE SUBUNIT B HALOFERAX SP 230-257 POYRE_MYCPN DNA GYRASE SUBUNIT B MYCOPLASMA PNEUMONIAE 249-283 PGYRB_NEIGO DNA GYRASE SUBUNIT B NEISSERIA GONORRHOEAE 524-558 618-645 PGYRB_PSEPU DNA GYRASE SUBUNIT B PSEUDOMONAS PUTIDA 122-149 684-711 PGYRB_SPICI DNA GYRASE SUBUNIT B SPIROPLASMA CITRI 40-74 189-238 283-310 341-368 540-579 PGYRB_STAAU DNA GYRASE SUBUNIT B STAPHYLOCOCCUS AUREUS 252-279 291-318 PHDHA_ECOLI 7-ALPHA-HYDROXYSTEROID ESCHEPICHIA COLI 71-98 DEHYDROGENASE PHELD_ECOLI HELICASE IV ESCHEPICHIA COLI 100-134 529-556 PHEL_HABIN LIPOPROTEIN E PRECURSOR HAEMOPHILUS INFLUENZAE 58-85 PHEMI_CHLVI GLUTAMYL-TRNA REDUCTASE CHLOROBIUM VIBIOFORMES 232-259 PHEMI_ECOLI GLUTAMYL-TRNA REDUCTASE ESCHERICHIA COLI 289-316 PHEMI_RHOSH 5-AMINOLEVULINIC ACID SYNTHASE RHODOBACTER SPHAEROIDES 73-100 PHEMI_SALTY GLUTAMYL-TRNA REDUCTASE SALMONELLA TYPHIMURIUM 289-316 344-371 PHEMI_SYNY3 GLUTAMYL-TRNA REDUCTASE SYNECHOCYSTIS SP 163-190 350-377 PHEM2_METSC DELTA-AMINOLEVULINIC ACID METHANOTHERMUS SOCIABILIS 131-158 DEHYDRATASE PHEM4_BACSU PUTATIVE URDPORPHYRINOGEN-III SYNTHASE BACILLUS SUBTILIS 10-37 PHEM4_ECOLI UROPORPHYRINOGEN-III SYNTHASE ESCHERICHIA COLI 211-238 PHEMM_ECOLI HEMM PROTEIN ESCHEPICHIA COLI 141-174 PHEMR_YEREN HEMIN RECEPTOR PRECURSOR YERSINIA ENTEROCOLITICA 234-261 PHEMX_ECOLI PUTATIVE METHYLTRANSFERASE ESCHERICHIA COLI 69-138 185-219 PHEMY_BACSU HEMY PROTEIN BACILLUS SUBTILIS 217-262 PHEMZ_BACSU FERROCHELATASE BACILLUS SUBTILIS 199-226 PHETA_ANASP HETEROCYST DIFFERENTIATION PROTEIN ANABAENA SP 184-211 357-398 521-565 PHEXA_STRPN DNA MISMATCH REPAIR PROTEIN HEXA STREPTOCOCCUS PNEUMONIAE 426-460 PHEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB STREPTOCOCCUS PHEUMONIAE 470-497 PHFAB_CAUCR POS TRANSACTIVATOR PROTEIN CAULOBACTER CRESCENTUS 98-125 HFAB PHFLC_ECOLI HFLC PROTEIN ESCHERICHIA COLI 113-140 PHFLX_ECOLI GTP-BINDING PROTEIN HFLX ESCHERICHIA COLI 169-196 PHFQ_ECOLI HOST FACTOR-I PROTEIN ESCHERICHIA COLI 24-51 PHIFC_HAEIN PILIATION PROTEIN HIFC PRECURSOR HAEMOPHILUS INFLUENZAE 356-383 404-431 447-474 PHIS2_LACLA PHOSPHORIBOSYL-AMP LACTOCOCCUS LACTIS 126-174 CYCLOHYDROLASE PHIS4_ECOLI P-5-A CARBOXAMIDE RIBOTIDE ESCHERHCHIA COLI 125-159 PHIS4_LACLA P-5-A CARBOXAMIDE RIBOTIDE LACTOCOCCUS LACTIS 49-89 181-228 PHIS4_METVA P-5-A CARBOXAMIDE RIBOTIDE METHANOCOCCUS VANNIELII 115-142 PHIS4_SALTY P-5-A CARBOXAMIDE RIBOTIDE SALMONELLA TYPHIMURIUM 125-159 PHISS_LACLA AMIDOTRANSFERASE HISH LACTOCOCCUS LACTIS 7-34 PHIS6_ECOLI HISF PROTEIN ESCHERICHIA COLI 39-66 142-169 PHIS6_SALTY HISF PROTEIN SALMONELLA TYPHIMURIUM 39-66 142-169 PHIS7_ECOLI IMIDAZOLEOLYCEROL- ESCHEPICHIA COLI 168-199 PHOSPHATE DEHYDRATAS PHIS7_SALTY IMIDAZOLEGLYCEROL- SALMONELLA TYPHIMURIUM 161-199 PHOSPHATE DEHYDRATAS PHIS8_ECOLI HISTIDINOL-PHOSPHATE ESCHERICHIA COLI 290-317 AMINOTRANSFERASE PHIS8_HALVO HISTIDINOL-PHOSPHATE HALOBACTERIUM VOLCANII 174-201 AMINOTRANSFERASE PHIS8_LACLA HISTIDINOL-PHOSPHATE LACTOCOCCUS LACTIS 161-188 AMINOTRANSFERASE PHIS8_SALTY HISTIDINOL-PHOSPHATE SALMONELLA TYPHIMURIUM 293-320 AMINOTRANSFERASE PHISQ_SALTY HISTIDINE PERMEASE MEMBRANE SALMONELLA TYPHIMURIUM 8-35 Q PROTEIN PHISX_ECOLI HISTIDINOL DEHYDROGENASE ESCHERICHIA COLI 393-434 PHISX_LACLA HISTIDINOL DEHYDROOENASE LACTOCOCCUS LACTIS 19-46 264-303 PHISX_MYCSM HISTIDINOL DEHYDROGENASE MYCOBACTERIUM SMEGMATIS 288-329 399-430 PHISX_SALTY HISTIDINOL DEHYDROGENASE SALMONELLA TYPHIMURIUM 393-434 PHLA_STAAU ALPHA-HEMOLYSIN PRECURSOR STAPHYLOCOCCUS AUREUS 69-103 PHLY1_ECOLI HEMOLYSIN A, CHROMOSOMAL ESCHERICHIA COLI 5-32 76-103 161-224 234-261 353-380 458-492 554-581 642-728 PHIY2_ECOLI HAEMOLYSIN SECRETION PROTEIN ESCHERICHIA COLI 487-514 CHROMOSOMA PHIY4_ECOLI HEMOLYSIN D, CHROMOSOMAL ESCHERICHIA COLI 103-133 178-215 223-331 PHLYA_ACTPL HEMOLYSIN ACTINO BACILLUS PLEUROPNEUMONIAE 5-39 136-170 184-218 273-300 350-377 459-527 846-924 PHLYA_ACTSU HEMOLYSIN ACTINO BACILLUS SUIS 5-39 136-170 184-218 273-300 350-377 459-500 846-924 PHLYA_ECOLI HEMOLYSIN A, PLASMID ESCHERICHIA COLI 5-32 76-103 161-262 354-381 452-493 555-582 643-729 PHLYA_PROMI HEMOLYSIN PRECURSOR PROTEUS MIRABILIS 165-196 299-338 356-400 425-471 498-525 528-576 610-695 705-742 747-774 789-823 841-868 966-993 1113- 1166- 1225- 1301- 1391- 1483- 1140 1193 1273 1342 1461 1527 PHLYA_SERMA HEMOLYSIN PRECURSOR SERRATIA MARCESCENS 311-345 477-504 558-585 625-703 718-745 830-864 1081- 1155- 1249- 1108 1202 1286 1516- 1553 PHLYA_VIBCH HEMOLYSIN PRECURSOR VIBRIO CHOLERAE 335-369 638-665 PHLYB_ACTPL HAEMOLYSIN SECRETION PROTEIN ACTINO BACILLUS PLEUROPNEUMONIAE 34-61 PHLYB_ECOLI HAEMOLYSIN SECRETION PROTEIN, ESCHERICHIA COLI 487-514 PLASMID PHLYB_PROMI HEMOLYSIN ACTIVATOR PROTEIN PROTEUS MIRABILIS 16-64 499-547 PRECURSOR PHLYB_PROVU HAEMOLYSIN SECRETION PROTEIN PROTEUS VULGARIS 34-68 487-514 PHLYB_SERMA HEMOLYSIN ACTIVATOR PROTEIN SERRATIA MARCESCENS 110-137 PRECURSOR PHLYB_VIECH HEMOLYSIN SECRETION PROTEIN VIBRIO CHOLERAE 335-398 413-447 458-524 PRECURSOR PHLYC_ACTPL HEMOLYSIN C ACTINO BACILLUS PLEUROPNEUMONIAE 130-157 PHLYD_ACTPL HEMOLYSIN SECRETION PROTEIN APPD ACTINO BACILLUS PLEUROPNEUMONIAE 191-331 PHLYD_ECOLI HEMOLYSIN D,PLASMID ESCHERICHIA COLI 103-133 178-215 223-331 PHLY_HAL17 HALOLYSIN PRECURSOR HALOPHILIC BACTERIA STRAIN 172P1 484-516 PHMC3_DESVH 43.2 KD PROTEIN IN HMC OPERON DESULFOVIBRIO VULGARIS 156-186 PHMD_METKA H(2)-FORMING DEHYDROGENASE METHANOPYRUS KANDLERI 36-63 PHNS_SERMA DNA-BINDING PROTEIN H-NS SERRATIA MARCESCENS 35-62 PHOLA_ECOLI DNA POLYMERASE III, DELTA SUBUNIT ESCHERICHIA COLI 94-121 288-322 PHOXA_BRAJA REG PROTEIN HOXA BRADYRHIZOBIUM JAPONICUM 113-163 444-471 PHOXF_NOCOP HOXS ALPHA SUBUNIT NOCARDIA OPACA 4-31 PHOXQ_ALCEU HOXX PROTEIN ALCALIGEES EUTROPHUS 76-110 PHOXX_BRAJA HOXX PROTEIN BRADYRHIZOBIUM JAPONICUM 356-383 PHPI_DEIRA HEXAGONALLY SURFACE PROTEIN DEINOCOCCUS RADIODURANS 585-612 PRECURSOR PHPRT_LACLA PHOSPHORIBOSYLTRANSFERASE LACTOCOCCUS LACTIS 3-39 71-105 PHRDD_STRCO SIGMA FACTOR HRDD STREPTMYCES COELICOLOR 296-323 PHRPB_BURSO REGULATORY PROTEIN HRPB BURKHOLDERIA SOLANACEARUM 371-405 PHRPH_PSESY OUTER MEMBRANE PROTEIN HRPH PSEUDOMONAS SYRINGAE 102-129 310-344 PRECURSOR PHRPS_PSESH PROBABLY REGULATORY PROTEIN PSEUDOMONAS SYRINGAE 24-51 HRPS PHS18_CLOAB 18 KD HEAT SHOCK PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 67-108 PHS70_HALMA HEAT SHOCK 70 KD PROTEIN HALOARCULA MARISMORTUI 522-576 PHS70_MYCLE HEAT SHOCK 70 KD PROTEIN MYCOBACTERIUM LEPRAE 461-488 503-530 PHS70_MYCPA HEAT SHOCK 70 KD PROTEIN MYCOBACTERIUM PARATUBERCULOSIS 460-487 PHTPG_ECOLI HEAT SHOCK PROTEIN C625 ESCHERICHIA COLI 221-248 482-509 PHTRA_ECOLI PROTEASE DO PRECURSOR ESCHERICHIA COLI 373-400 PHTRE_ECOLI HTRE PROTEIN PRECURSOR ESCHERICHIA COLI 454-484 524-576 PHTRI_HALHA SENSORY RHODOPSIN I TRANSDUCER HALOBACTERIUM HALOBIUM 413-471 479-506 PHTRI_HALSA SENSORY RHODOPSIN I TRANSDUCER HALOBACTERIUM SALINARIUM 114-149 413-471 479-506 PHUTP_BACSU HUT OPERON POSITIVE BACILLUS SUBTILIS 5-36 REGULATORY PROTEIN PHVTJ_LACHE HELVETICIN J LACTO BACILLUS HELVETICUS 174-212 306-333 PHYCA_ECOLI FORMATE HYDROGENL YASE SUBUNIT I ESCHERICHIA COLI 73-100 106-133 PHYDO_ECOLI TRANSCRIPTIONAL REGULATORY ESCHERICHIA COLI 251-278 PROTEIN HYDG PHYDG_SALTY TRANSCRIPTIONAL REGULATORY SALMONELLA TYPHIMURIUM 251-278 PROTEIN HYDO PHYDH_ECOLI SENSOR PROTEIN HYDH ESCHERICHIA COLI 312-339 360-387 PHYUB_PSESN HYDANTOIN UTILIZATION PROTEIN B PSEUDOMONAS SP 554-581 PHYUC_PSESN HYDANTOIN UTILIZATION PROTEIN PSEUDOMONAS SP 6-40 96-123 PIAAL_PSESS INDOLEACETATE-LYSINE LIGASE PSEUDOMONAS SYRINGAE 133-160 297-331 PIAP_ECOLI ALK PHOS ISOZYME CONVERSION ESCHERICHIA COLI 74-101 PROTEIN PICEN_EAWAN ICE NUCLEATION PROTEIN ERWINIA ANANAS 326-353 422-449 534-561 614-641 662-689 721-748 758-785 854-881 950-977 1046- 1073 PICEN_ERWHE ICE NUCLEATION PROTEIN ERWINIA HERBICOLA 310-337 406-433 534-561 646-673 694-721 838-865 886-913 982- 1009 PICEN_PSEFL ICE NUCLEATION PROTEIN PSEUDOMONAS FLUORESCENS 281-308 377-404 425-452 681-708 729-781 795-852 PICEN_PSESY ICE NUCLEATION PROTEIN PSEUDOMONAS SYRINGAE 564-602 772-847 868-895 909-943 PICEN_XANCT ICE NUCLEATION PROTEIN XANTHOMONAS CAMPESTRIS 496-534 555-582 1168- 1248- 1204 1273 PICSB_SHIFL INTERCELLULAR SPREAD PROTEIN SHIGELLA FLEXNERI 41-105 438-467 PIF2_BACST INITIATION FACTOR IF-2 BACILLUS STEAROTHERMOPHILUS 540-567 681-708 PIF2_BACSU INITIATION FACTOR IF-2 BACILLUS SUBTILIS 173-208 394-421 PIF2_ECOLI INITIATION FACTOR IF-2 ESCHERICHIA COLI 686-724 835-862 PIF2_ENTFC INITIATION FACTOR IF-2 ENTEROCOCCUS FAECIUM 579-627 PIF3_BACST INITIATION FACTOR IF-3 BACILLUS STEAROTHERMOPHILUS 7-34 PIF3_ECOLI INITIATION FACTOR IF-3 ESCHERICHIA COLI 27-54 70-97 PIF3_KLEPN INITIATION FACTOR IF-3 KLEBSIELLA PNEUMONIAE 27-54 70-97 PIF3_MYCFE INITIATION FACTOR IF-3 MYCOPLASMA FERMENTANS 177-211 PIF3_PROVU INITIATION FACTOR IF-3 PROTEUS VULGARIS 2-29 70-97 PIF3_SALTY INITIATION FACTOR IF-3 SALMONELLA TYPHIMURIUM 27-54 70-97 PIF3_SERMA INITIATION FACTOR IF-3 SERRATIA MARCESCENS 19-46 70-97 PIGA_NEIGO IGA-SPECIFIC SERINE ENDOPEPTIDASE NEISSERIA GONORRHOEAE 245-272 287-314 833-860 1024- 1377- 1483- 1058 1404 1531 PIGGB_STRSP IGG BINDING PROTEIN PRECURSOR STREPTOCOCCUS SP 46-76 120-150 195-222 PIGGB_STRSP IGG BINDING PROTEIN PRECURSOR STREPTOCOCCUS SP 46-76 120-150 195-222 270-297 PILVH_ECOLI ACETOLACTATE SYNTHASE ESCHERICHIA COLI 47-81 120-147 PILVH_SALTY ACETOLACTATE SYNTHASE SALMONELLA TYPHIMURIUM 47-81 120- 147 PILVN_LACLA ACETOLACTATE SYNTHASE LACTOCOCCUS LACTIS 20-75 PIMPE_SALTY IMPB PROTEIN SALMONELLA TYPHIMURIUM 185-212 PIMP_ACICA INOSINE-5′-MONOPHOSPNATE ACINETOBACTER CALCOACETICUS 166-193 DEHYDROGENASE PIMP_BACSU E-5′-MONOPHOSPHATE DEOIYDROGENASE BACILLUS SUBTILIS 159-186 PINA_BACTL IMMUNE INHIBITOR A PRECURSOR BACILLUS THURINGIENSIS 103-130 324-358 PINLA_LISMO INTERNALIN A LISTERIA MONOCYTOGENES 106-143 161-188 196-232 PINLB_LISMO INTERNALIN B PRECURSOR LISTERIA MONOCYTOGENES 53-94 166-200 385-415 PINVA_YEREN INVASIN VERSINIA ENTEROCOLITICA 501-535 PIPA7_SHIFL 60 KD ANTIGEN SHIGELLA FLEXNERI 285-312 PIPAA_SHIFL 70 KD ANTIGEN SHIGELLA FLEXNERI 95-136 437-475 493-557 596-630 PIPAB_SHIDY 62 KD MEMBRANE ANTIGEN SHIGELLA DYSENTERIAE 28-55 71-169 480-507 522-556 PIPAB_SHIFL 62 KD MEMBRANE ANTIGEN SHIGELLA FLEXNERI 28-55 71-169 480-507 522-556 PIPAC_SHIFL 42 KD MEMBRANE ANTIGEN PRECURSOR SHIGELLA FLEXNERI 28-57 113-161 273-300 324-372 PIPAD_SHIDY 37 KD MEMBRANE ANTIGEN IPAD SHIGELLA DYSENTERIAE 47-86 291-318 PIPAD_SHIFL 36 KD MEMBRANE ANTIGEN SHIGELLA FLEXNERI 47-86 259-286 291-318 PIPGB_SHIDY IPGB PROTEIN SHIGELLA DYSENTERIAE 175-202 PIPGB_SHIFL IPGB PROTEIN SHIGELLA FLEXNERI 175-202 PIPT_PSESS ISOPENTENYL TRANSFERASE PSEUDOMONAS SYR1NGAE 53-87 143-173 PIPYR_ECOLI INORGANIC PYROPHOSPHATASE ESCHERICHIA COLI 138-172 PIRGA_VIBCH VIRULENCE PROTEIN PRECURSOR VIERIO CHOLERAS 212-239 336-377 PIRGB_VIBCH VIRULENCE REGULATORY PROTEIN IRGB VIERIO CHOLERAE 67-97 PIRPA_SYNP7 IRON-REGULATED PROTEIN A SYNECHOCOCCUS SP 167-194 PISBD_SHIDY INSERTION ELEMENT ISO-ISID SHIGELLA DYSENTERIAE 86-113 PROTEIN INSB PISBN_SHIDY INSERTION ELEMENT ISO-ISIN SHIGELLA DYSENTERIAE 6-37 PROTEIN INSB PISB_ECOLI INSERTION ELEMENT IS1 ESCHERICHIA COLI 122-149 PROTEIN INSB PISB_SHIFL INSERTION ELEMENT IS1 SHIGELLA FLEXNERI 86-113 PROTEIN INSB PISB_SHISO INSERTION ELEMENT IS1 SHIGELLA SONNEI 86-113 PROTEIN INSB PISPI_BACSU MAJOR INTRACELLULAR SERINE BACILLUS SUBTILIS 115-142 197-224 253-280 PROTEASE PISPI_BACPO INTRACELLULAR SERINE PROTEASE BACILLUS POLYMYXA 109-143 PISTA_ECOLI ISTA PROTEIN ESCHERICHIA COLI 183-210 PISTA_SHISO ISTA PROTEIN SHIGELLA SONNEI 183-210 PIUTA_ECOLI FERRIC AEROBACTIN RECEPTOR ESCHERICHIA COLI 186-213 525-552 539-593 PRECURSOR PJAG_BACSU JAG PROTEIN BACILLUS SUBTILIS 68-95 PK6P2_ECOLI 6-PHOSPHOFRUCTOKINASE ISOZYME 2 ESCHERICIA COLI 143-170 PKAD_BACSU ADENYLATE KINASE BACILLUS SUBTILIS 188-215 PKAD_LACLA ADENYLATE KINASE LACTOCOCCUS LACTIS 186-213 PKANU_BACSP KANAMYCIN NUCLEOTIDYL- BACILLUS SP 69-96 TRANSFERASE PKANU_STAAU KANAMYCIN NUCLEOTIDYL- STAPHYLOCOCCUS AUREUS 69-96 TRANSFERASE PKDGT_ECOLI 2-KETO-3-DEOXYGLUCONATE PERMEASE ESCHERICHIA COLI 70-97 PKDGT_ERWCH 2-KETO-3-DEOXYGLUCONATE PERMEASE ERWINIA CHRYSANTHEMI 126-153 PKDTA_ECOLI 3-DEOXY-D-MANNO-OCTULOSONIC- ESCHERICHIA COLI 369-396 ACID TRANS PKGTP_ECOLI ALPHA-KETOGLUTARATE PERMEASE ESCHERICHIA COLI 7-34 PKGUA_ECOLI GUANYLATE KINASE ESCHERICHIA COLI 162-189 PKHSE_BACSU HOMOSERINE KINASE BACILLUS SUBTILIS 49-76 PKHSE_FREDI HOMOSERINE KINASE FREMYELLA DIPLOSIPHON 52-79 PKKA4_BACCI AMINOGLYCOSIDE 3′- BACILLUS CIRCULANS 12-39 PHOSPHOTRANSFERASE PKORB_ECOLI KORB TRANSCRIPTIONAL ESCHERICHIA COLI 228-255 REPRESSOR PROTEIN PKPYI_SPICI PYRUVATE KINASE SPIROPLASMA CITRI 112-148 PKPYK_BACST PYRUVATE KINASE BACILLUS STEAROTHERMOPHILUS 331-374 PLACA_STAAU ISOMERASE LACA SUBUNIT STAPHYLOCOCCUS AUREUS 9-64 PLACA_STRMU ISOMERASE LACA SUBUNIT STREPTOCOCCUS MUTANS 26-60 PLACC_STRMU TAGATOSE-6-PHOSPHATEKINASE STREPTOCOCCUS MUTANS 56-83 233-310 PLACO_LACCA 6-PHOSPHO-BETA-GALACTOSIDASE LACTO BACILLUS CASEI 290-317 PLACI_ECOLI LACTOSE OPERON REPRESSOR ESCHERICHIA COLI 9-36 PLACI_KLEPN LACTOSE OPERON REPRESSOR KLEBSIELLA PNEUMONIAE 195-229 PLACR_STAAU PHOSPHOTRANSFERASE REPRESSOR STAPHYLOCOCCUS AUREUS 2-29 PLACR_STRMU PHOSPHOTRANSFERASE REPRESSOR STREPTOCOCCUS MUTANS 2-32 PLACY_LACDE LACTOSE PERMEASE LACTO BACILLUS DELBRUECKII 196-230 PLAFB_VIBPA FLAGELLAR HOOK-ASSOCIATED VIBRIO PARAHAEMOLYTUCS 62-89 388-415 PROTEIN 2 PLAMB_KLEPN MALTOPORIN PRECURSOR KLEBSIELLA PNEUMONIAE 337-364 PLAMI_CLOTM ENDO-1,-3(4)-BETA-GLUCANASE CLOSTRIDIUM THERMOCELLUM 132-159 PRECURSOR PLASI_PSEAE OHHL SYNTHESIS PROTEIN LASI PSEUDOMONAS AERUGINOSA 171-198 PLCCI_LEUGE PROBABLE LEUCOCIN A IMMUNITY LEUCONOSTOC GELIDUM 41-71 PROTEIN PLCNC_LACLA LACTOCOCCIN A SECRETION LACTOCOCCUS LACTIS 162-189 207-234 388-433 PROTEIN LCNC PLCND_LACLA LACTOCOCCIN A SECRETION PROTEIN LACTOCOCCUS LACTIS 99-126 140-202 237-307 LCND PLCRD_YEREN LOW CALCIUM RESPONSE LOCUS PROTEIN YERSINIA ENTEROCOLITICA 122-149 491-518 D PLCRD_YERPE LOW CALCIUM RESPONSE LOCUS PROTEIN VERSINIA PESTIS 122-149 491-518 D PLCRV_YERPE VIRULENCE-ASSOCIATED V ANTIGEN VERSINIA PESTIS 22-49 157-184 240-267 PLCRV_YERPS VIRULENCE-ASSOCIATED V ANTIGEN YERSINIA PSEUDOTUBERCULOSIS 22-49 240-267 PLCTB_BACCA LCTB PROTEIN BACILLUS CALDOTENAX 18-45 PLCTB_BACST LCTB PROTEIN BACILLUS STEAROTHERMOPHILUS 14-45 PLDHD_LACPL D-LACTATE DEHYDROGENASE LACTOBACILLUS PLANTARUM 51-81 PLDHP_BACPS L-LACTATE DEHYDROGENASE P BACILLUS PSYCHROSACCHAROLYTICUS 2-43 241-272 279-306 PLDHX_BACPS L-LACTATE DEHYDROGENASE X BACILLUS PSYCHROSACCHAROLYTICUS 2-43 241-275 279-306 PLDH_BACME L-LACTATE DEHYDROGENASE BACILLUS MEGATERIUM 224-274 PLDH_BACTS L-LACTATE DEHYDROGENASE BACILLUS STEAROTHERMOPHILUS 241-268 279-313 PLDH_BACSU L-LACTATE DEHYDROGENASE BACILLUS SUBTILIS 8-42 240-267 PLDH_BIFLO L-LACTATE DEHYDROGENASE BIFIDOBACTERIUM LONGUM 22-49 PLDH_LACPL L-LACTATE DEHYDROGENASE LACTOBACILLUS PLANTARUM 197-231 PLDH_LISMO L-LACTATE DEHYDROGENASE LISTERIA MONOCYTOGENES 42-69 PLDH_MYCHY L-LACTATE DEHYDROGENASE MYCOPLASMA HYOPNEUMONIAE 276-310 PLDH_THEAQ L-LACTATE DEHYDROGENASE THERMUS AQUATICUS 3-30 PLEF_BACAN LETHAL FACTOR PRECURSOR BACILLUS ANTHRACIS 165-192 304-331 480-514 548-578 619-658 737-764 PLEPA_PSEFL LEPA PROTEIN PSEUDOMONAS FLUORESCENS 23-50 PLEP_BACSU SIGNAL PEPTIDASE I BACILLUS SUBTILIS 3-30 PLEUI_ECOLI 2-ISOPROPYLMALATE SYNTHASE ESCHERICHIA COLI 437-464 PLEUI_LACLA 2-ISOPROPYLMALATE SYNTHASE LACTOCOCCUS LACTIS 22-49 379-484 PLEU3_BACCO 3-ISOPROPYLMALATE DEHYDROGENASE BACILLUS COAGULANS 331-358 PLEU3_CLOPA 3-ISOPROPYLMALATE DEHYDROGENASE CLOSTRIDIUM PASTEURIANUM 185-212 PLEUD_LACLA 3-ISOPROPYLMALATE DEHYDRATASE LACTOCOCCUS LACTIS 163-190 PLEVR_BACSU TRANSCRIPTIONAL REGULATORY BACILLUS SUBTILIS 297-324 676-703 744-774 785-822 PROTEIN LEVR PLEXA_ERWCA LEXA REPRESSOR ERWINIA CAROTOVORA 146-173 PLIP1_MORSP LIPASE 1 MORAXELLA SP 26-53 PLIP2_MORSP LIPASE 2 MORAXELLA SP 356-383 PLIPB_ECOLI LIPB PROTEIN ESCHERICHIA COLI 66-93 PLIP_BURCE LIPASE PRECURSOR BURKHOLDERIA CEPACIA 176-203 PLIP_PSEFL LIPASE PRECURSOR PSEUDOMONAS FLUORESCENS 8-35 PLIP_PSESS LIPASE PRECURSOR PSEUDOMONAS SP 176-203 PLIP_STAAU LIPASE PRECURSOR STAPHYLOCOCCUS AUREUS 80-146 512-546 PLIVB_SALTY LEU/ILE/VAL/THR-BINDING SALMONELLA TYPHIMURIUM 193-220 PROTEIN PRECURSOR PLIVC_SALTY LEUCINE-SPECIFIC BINDING SALMONELLA TYPHIMURIUM 195-222 PROTEIN PRECURSOR PLIVE_SALTY AMINO ACID TRANSPORT SALMONELLA TYPHIMURIUM 121-148 PROTEIN LIVE PLIVF_ECOLI AMINO ACID TRANSPORT ESCHERICHIA COLI 23-50 PROTEIN LIVE PLIVJ_CITFR LEU/ILE/VAL-BINDING PROTEIN CITROBACTER FREUNDII 195-222 PRECURSOR PLIVJ_ECOLI LEU/ILE/VAL-BINDING PROTEIN ESCHERICHIA COLI 195-222 PRECURSOR PLIVK_ECOLI LEUCINE-SPECIFIC BINDING ESCHERICHIA COLI 195-222 PROTEIN PRECURSOR PLIVM_ECOLI AMINO ACID TRANSPORT ESCHERICHIA COLI 121-148 PROTEIN LIVM PLKTA_ACTAC LEUROTOXIN ACTONO BACILLUS ACTINOMYCETEMCOMITANS 113-147 173-213 398-443 451-488 593-620 655-711 PLKTA_PASHA LEUKOTOXIN PASTEURELLA HAEMOLYTICA 53-99 179-216 345-372 409-436 455-482 496-530 545-572 811-838 853-926 PLKTB_ACTAC LEUKOTOXIN SECRETION PROTEIN ACTINO BACILLUS ACTINOMYCETEMCOMITANS 487-514 PLKTB_PASHA LEUKOTOXIN SECRETION PROTEIN PASTEURELLA HAEMOLYTICA 42-69 78-105 488-515 PLKTC_ACTAC LTC PROTEIN ACTINO BACILLUS ACTINOMYCETEMCOMITANS 58-85 116-150 PLKTC_PASHA LKTC PROTEIN PASTEURELLA HAEMOLYTICA 123-157 PLKTD_ACTAC LKTD PROTEIN ACTINO BACILLUS ACTINOMYCETEMCOMITANS 116-164 205-243 278-305 364-391 PLKTD_PASHA LKTD PROTEIN PASTEURELLA HAEMOLYTICA 184-289 PLON _ECOLI ATP-DEPENDENT PROTEASE LA ESCHERICHIA COLI 121-184 PLPXA_RICRI UDP-N-ACETYLGLUCOSAMINE RICKETTSIA RICKETTSII 229-256 ACYLTRANSFERASE PLSPA_ECOLI LIPOPROTEIN SIGNAL PEPTIDASE ESCHERICHIA COLI 10-37 PLSPA_STAAU LIPOPROTEIN SIGNAL PEPTIDASE STAPHYLOCOCCUS AUREUS 134-161 PLUKF_STAAU LEUKOCIDINE F SUBUNIT PRECURSOR STAPHYLOCOCCUS AUREUS 161-195 PLUKS_STAAU LEUKOCIDIN S SUBUNIT PRECURSOR STAPHYLOCOCCUS AUREUS 157-207 PLEXA_KRYAL ALKANAL MONOOXYGENASE ALPHA CHAIN KRYPTOPHANARON ALFREDI 190-217 PLUXB_PHOPO ALKANAL MONOOXYGENASE BETA CHAIN PHOTOBACTERIUM PHOSPHOREUM 188-217 257-291 PLUXB_VIBHA ALKANAL MONOOXYGENASE BETA CHAIN VIBRIO HARVEYI 373-400 PLUXC_PHOLE ACYL-COA REDUCTASE PHOTOBACTERIUM LEIOGNATHI 44-81 PLUXC_PHOPO ACYL-COA REDUCTASE PHOTOBACTERIUM PHOSPHOREUM 54-91 PLUXC_VIBFI ACYL-COA REDUCTASE VIBRIO FISCHERI 16-65 PLUXC_XENLU ACYL-COA REDUCTASE XENORHABDUS LUMINESCENS 39-69 PLUXD_PHOLE ACYL TRANSFERASE PHOTOBACTERIUM LEIOGNATHI 89-119 218-245 PLUXE_VIBHA LUCIFERIN-COMPONENT LIGASE VIBRIO HARVEYI 30-57 PLUXJ_PHOLE NON-FLUORESCENT FLAVOPROTEIN PHOTOBACTERIUM LEIOGNATHI 145-172 PLUXF_PHOPO NON-FLUORESCENT FLAVOPROTEIN PHOTOBACTERIUM PHOSPHOREUM 37-85 99-126 PLUXG_VIBFI PROBABLE FLAVIN REDUCTASE VIBRIO FISCHERI 137-168 PLUXH_VIBHA LUXH PROTEIN VIBRIO HARVEYI 96-123 PLUXI_VIBFI OHHL SYNTHESIS PROTEIN LUXI VIBRIO FISCHERI 30-58 PLUXI_VIRFI OHHL SYNTHESIS PROTEIN LUXI VIBRIO FISCHERI 30-57 PLUXP_PHOPO LUMAZINE PROTEIN PHOTOBACTERIUM PHOSPHOREUM 51-85 162-189 PLUXR_VIBHA LUXR REGULATORY PROTEIN VIBR2O HARVEYI 61-88 PLXBI_PHOLE ALKANAL MONOOXYGENASE PHOTOBACTERIUM LEIOGNATHI 268-295 BETA CHAIN PLXB2_PHOLE ALKANAL MONOOXYGENASE PHOTOBACTERIUM LEIOGNATHI 228-255 BETA CHAIN PLYB_BACSU B-ENZYME BACILLUS SUBTILIS 87-114 PLYC_CLOAB AUTOLYTIC LYSOZYME CLOSTRIDIUM ACETOBUTYLICUM 91-118 PLYSP_ECOLI LYSINE-SPECIFIC PERMEASE ESCHERICHIA COLI 142-176 PLYTB_BACSU AMIDASE ENHANCER PRECURSOR BACILLUS SUBTILIS 55-82 150-177 467-513 555-585 PLYTB_ECOLI LYTB PROTEIN ESCHERICHIA COLI 210-237 PLYTC_BACSU AMIDASE PRECURSOR BACILLUS SUBTILIS 179-213 225-252 PLYTR_BACSU MEMBRANE-BOUND PROTEIN LYTR BACILLUS SUBTILIS 13-64 259-303 PMI2_STRPY M PROTEIN, SEROTYPE 12 PRECURSOR STREPTOCOCCUS PYOGENES 46-92 114-156 191-300 305-342 383-417 436-494 PM24_STRPY M PROTEIN, SEROTYPE 24 PRECURSOR STREPTOCOCCUS PYOGENES 12-46 89-128 175-202 245-272 280-313 399-457 PM49_STRPY M PROTEIN, SEROTYPE 49 PRECURSOR STREPTOCOCCUS PYOGENES 12-174 269-327 PM5_STRPY M PROTEIN, SEROTYPE 5 PRECURSOR STREPTOCOCCUS PYOGENES 5-39 56-263 306-333 352-410 PM6_STRPY M PROTEIN, SEROTYPE 6 PRECURSOR STREPTOCOCCUS PYOGENES 12-39 70-282 290-324 343 PMALE_ECOLI MALTOSE-BINDING PROTEIN PRECURSOR ESCHERICHIA COLI 20-47 PMALE_ENTAE MALTOSE-BINDING PROTEIN PRECURSOR ENTEROBACTER AEROGENES 20-47 PMALK_ENTAE INNER MEMBRANE PROTEIN MALK ENTEROBACTER AEROGENES 3-30 PMALT_ECOLI MALT REGULATORY PROTEIN ESCHERICHIA COLI 852-879 PMALX_STRPN MALX PROTEIN PRECURSOR STREPTOCOCCUS PNEUMONIAE 40-67 180-207 PMANB_BACSM 1,4-BETA-MANNOSIDASE A AND B PREC BACILLUS SP 410-441 PMANB_CALSA B-MANNANASE/ENDOGLUCANASE A PREC CALDOCELLUM SACCHAROLYTICUM 389-423 592-626 1222- 1296- 1256 1323 PMAOX_BACST MALATE OXIDOREDUCTASE BACILLUS STEAROTHERMOIHILUS 246-273 PMARR_ECOLI ANTIBIOTIC RESISTANCE PROTEIN MARR, ESCHERICHIA COLI 95-122 PMBEB_ECOLI MOBILIZATION PROTEIN MBEB ESCHERICHIA COLI 38-65 100-134 PMBHL_WOLSU QUINONE-REAC NI/FE-HYDROGENASE WOLINELLA SUCCINOGENES 440-471 PMCBB_ECOLI MCBB PROTEIN ESCHERICHIA COLI 47-74 122-163 PMCBD_ECOLI MCBD PROTEIN ESCHERICHIA COLI 172-206 226-253 306-345 PMCPI_ECOLI METHYL-ACCEPTING CHEMOTAXIS ESCHERICHIA COLI 272-299 PROTEIN I PMCP2_ECOLI METHYL-ACCEPTING CHEMOTAXIS ESCHERICHIA COLI 258-306 PROTEIN II PMCP2_SALTY METHYL-ACCEPTING CHEMOTAXIS SALMONELLA TYPHIMURIUM 258-306 PROTEIN II PMCP3_ECOLI METHYL-ACCEPTING CHEMOTAXIS ESCHERICHIA COLI 288-315 PROTEIN III PMCP4_ECOLI METHYL-ACCEPTING CHEMOTAXIS ESCHERICHIA CDLI 111-145 164-191 277-304 PROTEIN IV PMCPA_CAUCR CHEMORECEPTOR MCPA CAULOBACTER CRESCENTUS 260-287 369-403 516-543 PMCPC_SALTY CHEMOTAXIS CITRATE TRANSDUCER SALMONELLA TYPHIMURIUM 314-348 PMCPD_ENTAE CHEMOTAXIS ASPARTATE TRANSDUCER ENTEROBACTER AEROGENES 275-302 PMCPS_ENTAE CHEMOTAXIS SERINE TRANSDUCER ENTEROBACTER AEROGENES 41-68 158-208 317-351 488-522 PMCRA_ECOLI SPECIFIC RESTRICTION ENZYME A ESCHERICHIA COLI 37-71 PMCRA_METBA METHYL-COENZYME M REDUCTASE METHANOSARCINA BARKERI 375-405 PMCRA_METVA METHYL-COENZYME M REDUCTASE METHANOCOCCUS VANNIELII 335-362 PMCRA_METVO METHYL-COENZYME M REDUCTASE METHANOCOCCUS VOLTAE 336-363 PMCRB_METFE METHYL-COENZYME M REDUCTASE METHANOTHERMUS FERVIDUS 267-294 PMCRB_METVO METHYL-COENZYME M REDUCTASE METHANOCOCCUS VOLTAE 247-274 PMCRC_ECOLI MCRC PROTEIN ESCHERICHIA COLI 111-145 PMCRD_METVO REDUCTASE OPERON PROTEIN D METHANOCOCCUS VOLTAE 54-91 PMDH_ECOLI MALATE DEHYDROGENASE ESCHERICHIA COLI 127-154 PMDH_METFE MALATE DEHYDROGENASE METHANOTHERMUS FERVIDUS 54-88 PMDH_SALTY MALATE DEHYDROGENASE SALMONELLA TYPHIMURIUM 127-154 PMDL_ECOLI MDL PROTEIN ESCHERICHIA COLI 464-491 684-711 992- 1019 PMDOH_ECOLI BIOSYNTHESIS PROTEIN MDOH ESCHERICHIA COLI 119-152 PMECI_STAEP METHICILLIN RESIS REG PROTEIN MED STAPHYLOCOCCUS 88-122 EPIDERMIDIS &AUREUS PMECR_STAEP METHICILLIN RESISTANCE MECRI STAPHYLOCOCCUS 439-495 546-573 PROTEIN EPIDERMIDIS &AUREUS PMEMB_METCA METHANE MONOOXYGENASE METHYLOCOCCUS CAPSULATUS 214-248 COMPONENT A PMEMB_METTR METHANE MONOOXYGENASE METHYLOSINUS TRICHOSPORIUM 321-348 COMPONENT A PMEND_ECOLI SHCHC SYNTHASE ESCHERICHIA COLI 333-367 PMER4_STELI PROBABLE HG TRANSPORT PROTEIN STREPTOMYCES LIVIDANS 159-186 PMERA_BACSR MERCURIC REDUCTASE BACILLUS SP 146-180 PMERA_STAAU MERCURIC REDUCTASE STAPHYLOCOCCUS AUREUS 292-347 352-386 PMERR_STAAU MERCURIC RESISTANCE OPERON STAPHYLOCOCCUS AUREUS 86-113 REG PROTEIN PMETB_ECOLI CYSTATHIONINE GAMMA-SYNTHASE ESCHERICHIA COLI 356-383 PMETC_ECOLI CYSTATHIONINE BETA-LYASE ESCHERICH1A COLI 363-390 PMETC_SALTY CYSTATHIONINE BETA-LYASE SALMONELLA TYPHIMURIUM 2-29 PMETE_ECOLI METHIONINE SYNTHASE ESCHERICHIA COLI 448-482 PMETH_ECOLI METHIONINE SYNTHASE ESCHERICHIA COLI 311-398 642-676 PMFD_ECOLI TRANSCRIPTION-REPAIR COUPLING ESCHERICHIA COLI 185-212 FACTOR PHGLA_ECOLI GALACTOSIDE-BINDING PROTEIN ESCHERICHIA COLI 62-89 312-380 PMINC_BACSU SEPTUM SITE-DETERMINING BACILLUS SUBTILIS 65-122 PROTEIN MINC PMIOC_ECOLI MIOC PROTEIN ESCHERICHIA COLI 102-129 PMIP_CHLTR 27 KD MEMBRANE PROTEIN PRECURSOR CHALMYDIA TRACHOMATIS 41-75 PMIP_LEGMI OUTER MEMBRANE PROTEIN MIP LEGIONELLA MICDADEI 106-133 PRECURSOR PMLSI_ENTFA RRNA ADENINE N-6- ENTEROCOCCUSFAECALIS 4-81 120-154 METHYLTRANSFERASE PMLSI_STAAU RRNA ADENINE N-6- STAPHYLOCOCCUS AUREUS 9-47 METHYLTRANSFERASE PMLS2_ENTPA RRNA ADENINE N-6- ENTEROCOCCUS FAECALIS 4-81 120-154 METHYLTRANSPERASE PMLSB_BACFR RRNA ADENINE N-6- BACTEROIDES PRAGILIS 16-43 METHYLTRANSPERASE PMLSB_ECOLI RRNA ADENINE N-6- ESCHERICHIA COLI 4-81 120-154 METHYLTRANSFERASE PMLSB_STRPN RRNA ADENINE N-6- STREPTOCOCCUS PNEUMONIAE 4-81 120-154 METHYLTRANSPERASE PMLSB_STRSA RRNA ADENINE N-6- STREPTOCOCCUS SANGUIS 4-81 120-154 METHYLTRANSFERASE PMLSC_BACFR RRNA ADENINE N-6- BACTEROIDES PRAGILIS 16-43 METHYLTRANSPERASE PMMOB_METC METHANE MONOOXYGENASE METHYLOCOCCUS CAPSULATUS 34-64 REG PROTEIN II PMOAB_ECOLI MOLYBD COFAC BIOSYN PROTEIN B ESCHERXCHIA COLI 49-76 PMOBA_THIFE MOBA PROTEIN THIO BACILLUS FERROOXIDANS 94-121 251-278 PMOBC_THIFE MOBC PROTEIN THIO BACILLUS FERROOXIDANS 20-47 PMOBD_THIFE MOBD PROTEIN THIO BACILLUS FERROOXIDANS 95-132 PMOB_ECOLI MOB PROTEIN ESCHERICHIA COLI 45-72 PMOEA_ECOLI MOLYBDOPTERIN BIOSYNTHESIS ESCHERICHIA COLI 243-270 MOEA PROTEIN PMOP1_CLOPA MOLYBDENUM-PTERIN BINDING CLOSTRIDIUM PASTEURIANUM 26-53 PROTEIN I PMOP2_CLOPA MOLYDDENUM-PTERIN BINDING CLOSTRIDIUM PASTEURIANUM 26-64 PROTEIN II PMOXY_PARDE METHANOL UTIL CONT PROTEIN MOXY PARACOCCUS DENITRIFICANS 200-234 307-334 PMPEU_SYNPY BILIN BIOSYNTHESIS PROTEIN MPEU SYNECHOCOCCUS SP 2-36 80-107 198-225 PMPEV_SYNPY BILIN BIOSYNTHESIS PROTEIN MPEV SYNECHOCOCCUS SP 2-31 175-216 PMPRA_ECOLI MPRA PROTEIN ESCHERICHIA COLI 136-163 PMRAY_BACSU PENTAPEPTIDE-TRANSPERASE BACILLUS SUBTILIS 106-133 247-281 PMREB_BACCE ROD SHAPE-DETERMINING BACILLUS CEREUS 186-213 PROTEIN MREB PMREC_BACSU ROD SHAPE-DETERMINING BACILLUS SUBTILIS 65-112 PROTEIN MREC PMRKB_KLEPN CHAPERONE PROTEIN MRXB PRECURSORS KLEBSIELLA PNEUMONIAE 198-232 PMRKC_KLEPN MRKC PROTEIN PRECURSOR KLEBSIELLA PNEUMONIAE 55-82 452-489 592-622 PMRKD_KLEPN FIMBRIA ADHESIN PROTEIN PRESURSOR KLEBSIELLA PNEUMONIAE 222-268 PMRKD_KLEPN MRKE PROTEIN KLEBSIELLA PNEUMONIAE 193-220 PMRP4_STRPY FIBRIOGEN-/IG-BINDING PROTEIN STREPTOCOCCUS PYOGENES 7-46 99-310 PRECURSOR PMRP_STRSU MURAMIDASE-RELEASED PROTEIN STREPTOCOCCUS SUIS 75-102 130-177 261-291 421-448 507-534 588-622 773-800 1058- PRECURSOR 1085 PMSBA_ECOLI PROB ATP-BINDING TRANSPORT ESCHERICHIA COLI 116-150 412-449 MSBA PMSRA_STAEP ERYTHROMYCIN RESISTANCE PROTEIN STAPHYLOCOCCUS EPIDERMIDIS 174-223 323-350 PMSYB_ECOLI ACIDIC PROTEIN MSYB ESCHERICHIA COLI 73-100 PMT57_ECOLI MODIFICATION METHYLASE ECO571 ESCHERICHIA COLI 250-284 474-544 PMTAI_ACICA MODIFICATION METHYLASE ACCI ACINETOBACTER CALCOACETICUS 503-540 PMTAB_SYNP2 MODIFICATION METHYLASE AQUI SYNECHOCOCCUS SP 19-46 BETA SUBUNIT PMTBI_BREBP MODIFICATION METHYLASE BEPI BREVIBACTERIUM EPIDERMIDIS 166-200 309-336 PMTBI_HERAU MODIFICATION METHYLASE HGIBI HERPETOSIPNON AURANTIACUS 281-308 PMTB2_BACAM MODIFICATION METHYLASE BAMHI BACILLUS AMYLOLIQUEFACIENS 35-62 PMTB3_BACAR MODIFICATION METHYLASE BAMHI BACILLUS ANEURINOLYTICUS 184-211 PMTBA_BACAR MODIFICATION METHYLASE BANI BACILLUS ANEURINOLYTICUS 121-148 382-409 PMTBB_BACSU MODIFICATION METHYLASE BSUBI BACILLUS SUBTILIS 231-258 467-496 PMTBF_BACSU MODIFICATION METHYLASE BSUFI BACILLUS SUBTILIS 208-235 PMTC1_CITFR MODIFICATION METHYLASE CFRBI CITROBACTER FREUNDII 2-36 55-82 252-279 PMTC1_HERAU MODIFICATION METHYLASE HGICI HERPETOSIPHON AURANTIACUS 120-147 PMTC2_HEEAU MODIFICATION METHYLASE HGICII HERPETOSIPHON AURANTIACUS 281-311 PMTE1_ECOLI MODIFICATION METHYLASE ECORI ESCHERICHIA COLI 76-110 145-172 PMTE1_HERAU MODIFICATION METHYLASE HGIEI HERPETOSIPHON AURANTIACUS 281-308 PMTE2_ECOLI MODIFICATION METHYLASE ECORII ESCHERICHIA COLI 4-61 PMTE5_ECOLI MODIFICATION METHYLASE ECO RV ESCHERICHIA COLI 73-100 PMTEC_ENTCL MODIFICATION METHYLASE ECAI ENTEROBACTER CLOACAE 418-445 PMTF1_FLAOK MODIFICATION METHYLASE FOKI FLAVOBACTERIUM OKEANOKOITES 184-211 279-306 337-366 398-425 555-646 PMTF1_FUSNU MODIFICATION METHYLASE FNUDI FUSOBACTERIUM NUCLEATUM 22-49 PMTG2_HAEGA MODIFICATION METHYLASE HGAI-2 HAEMOPHILUS GALLINARUM 135-165 PMTH2_HAEIN MODIFICATION METHYLASE HINCII HAEMOPHILUS INFLUENZAE 181-208 399-426 PMTHZ_METTF MODIFICATION METHYLASE MTHZI METHANOBACTERIUM THERMOFORMICICUM 188-215 296-323 PMTKI_KLEPN MODIFICATION METHYLASE KPNI KLEBSIELLA PHEUMONIAB 270-297 PMTLD_STRMU MANNITOL-I-PHOSPHATE STREPTOCOCCUS MUTANS 39-66 224-258 349-376 5-DEHYDROGENASE PMTMI_MORSP MODIFICATION METHYLASE MSPI MORAXELLA SP 5-39 49-104 PMTN3_NEILA MODIFICATION METHYLASE NLAIII NEISSERIA LACTAMICA 124-158 183-210 PMTP2_PROVU MODIFICATION METHYLASE PVUII PROTEUS VULGARIS 308-335 PMTPG_SULAC MEMBRANE-ASSOCIATED ATPASE SULFOLOBUS ACIDOCALDARIUS 9-67 PMTPS_PROST MODIFICATION METHYLASE PSTI PROVIDENCIA STUARTII 226-264 PMTR_ECOLI TRYPTOPHAN-SPECIFIC TRANSPORT ESCHERICHIA COLI 80-107 PROTEIN PMTSI_STRSA MODIFICATION METHYLASE STSI STREPTOCOCCUS SANGUIS 116-153 434-461 600-645 PMTS2_SHISO MODIFICATION METHYLASE SSOII SHIGELLA SONNEI 81-108 PMTS9_STAAU MODIFICATION METHYLASE SAU961 STAPHYLOCOCCUS AUREUS 233-274 PMTSA_LACLC MODIFICATION METHYLASE SCRFI-A LACTOCOCCUS LACTIS 88-115 187-214 PMTSB_LACLC MODIFICATION METHYLASE SCRFI-B LACTOCOCCUS LACTIS 27-61 PMTSI_SPISQ CPG DNA METHYLASE SPIROPLASMA SP 188-230 256-290 PMTSM_SERMA MODIFICATION METHYLASE SMAI SERRATIA MARCESCENS 61-88 PMTTS_THETH MODIFICATION METHYLASE TTHHBII THERMUS AQUATICUS 120-157 PMTVI_VIBS3 MODIFICATION METHYLASE VSPI VIBR1O SP 23-66 PMUKB_ECOLI MUKB PROTEIN ESCHERICHIA COLI 320-381 1014- 1216- 1048 1252 PMULI_ERWAM MAJOR OUTER MEMBRANE ERWINIA AMYLOVORA 24-54 LIPOPROTEIN PREC PMULI_MORMO MAJOR OUTER MEMBRANE MORGANELA MORGANII 27-54 LIPOPROTEIN PREC PMULI_PROMI MAJOR OUTER MEMBRANE PROTEUS MIRABILIS 21-63 LIPOPROTEIN PREC PMURD_BACSU UDP-LIGASE BACILLUS SUBTILIS 101-132 299-326 PMURE_ECOLI LIGASE ESCHERICHIA COLI 107-134 PMURF_ECOLI UDP-MURNAC-PENTAPEPTIDE ESCHERICHIA COLI 407-437 SYNTHETASE PMURZ_ECOLI ENOYLPYRUVATE TRANSFERASE ESCHERICHIA COLI 392-419 PMURZ_ENTCL ENOYLPYRUVATE TRANSFERASE ENTEROBACTER CLOACAE 392-419 PMUTA_STRCM METMYLMALONYL-COA MUTASE STREPTOMYCES CINNAMONENSIS 31-58 BETA-SUBNIT PMUTB_PROFR METHYLMALONYL-COA MUTASE PROPIONIBACTERIUM 549-576 ALPHA-SUBUNIT FREUDENREICHII PMUTB_SALTY /G-SPECIFIC ADENINE GLYCOSYLASE SALMONELLA TYPHIMURIUM 273-300 PMUTB_STRCM METHYLMALONYL-COA MUTASE STREPTOMYCES CINNAMONENSIS 481-508 ALPHA-SUBUNIT PMUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL ESCHERICHIA COLI 80-114 PMUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL SALMONELLA TYPHIMURIUM 80-114 PMUTL_VIBCH PROTEIN MUTL VIBRIO CHOLERAE 134-169 PMUTS_ECOLI DNA MISMATCH REPAIR PROTEIN ESCHERICHIA COLI 119-153 MUTS PMUTT_STRAM MUTT-LIKE PROTEIN STREPTOMYCES AMBOFACIENS 60-87 PMVAA_PSEMV COENZYME A REDUCTASE PSEUDOMONAS MEVALONII 341-368 PMX_STRPY M-RELATED PROTEIN PRECURSOR STREPTOCOCCUS PYOGENES 5-129 148-182 190-217 240-301 PMYCO_STRCI MYCOLYSIN PRECURSOR STREPTOMYCES CACAOI 300-352 PMYFC_YEREN MYFC PROTEIN PRECURSOR YERSINIA ENTEROCOLITICA 210-237 PNADC_SALTY NICOTINATE-NUCLEOTIDE SALMONELLA TYPHIMURIUM 123-154 255-289 PYROPHOSPHORYLASE PNADR_SALTY TRANSCRIPTIONAL REGULATOR NADR SALMONELLA TYPHIMURIUM 233-260 PNAGD_ECOLI NAGD PROTEIN ESCHERICHIA COLI 75-102 PNAGH_CLOPE HYALURONOGLUCOSAMINIDASE CLOSTRIDIUM PERFRINGENS 48-75 990-1017 PNAGR_ECOLI NAGR PROTEIN ESCHERICHIA COLI 119-153 PNANH_CLOSE SIALIDASE PRECURSOR CLOSTRIDIUM SEPTICUM 11-42 289-330 922-988 PNANH_CLOSO SIALIDASE PRECURSOR CLOSTRIDIUM SORDELLI 377-404 PNANH_SALTY SIALIDASE SALMONELLA TYPHIMURIUM 290-317 PNAPA_ENTHR NA(+)/H(+) ANTIPORTER ENTEROCOCCUS HIRAE 116-150 PNARG_ECOLI RESPIRATORY NITRATE REDUCTASE ESCHERICHIA COLI 386-420 ALPHA CHAIN PNARL_ECOLI REGULATOR PROTEIN NARL ESCHERICHIA COLI 76-103 PNARP_ECOLI REGULATOR PROTEIN NARP ESCHERICHIA COLE 155-189 PNARX_ECOLI NITRATE/NITRITE SENSOR ESCHERICHIA COLI 220-247 358-385 431-458 505-538 PROTEIN NARX PNDVA_RHIME BETA-(I->2)GLUCAN EXPORT PROTEIN RHIZOBIUM MELILOTI 212-239 PNEOR_STRCY NEOMYCIN RESISTANCE PROTEIN STREPTOMYCES CYANOGENUS 348-375 PNEUA_ECOLI ACYLNEURAMINATE ESCHERICHIA COLI 218-252 268-298 CYTIDYLYLTRANSPERASE PNFRA_ECOLI N4 ADSORPTION PROTEIN A PRECURSOR ESCHERICHIA COLI 490-517 PNFRB_ECOLI N4 ADSORPTION PROTEIN B ESCHERICHIA COLI 2-43 186-220 511-538 PNFRC_ECOLI N4 ADSORPTION PROTEIN C ESCHERICHIA COLI 315-342 PNFSI_ENTCL NAD(P)H NITROREDUCTASE ENTEROBACTER CLOACAE 9-36 PNNAA_ECOLI NA(+)/H(+) ANTIPORTER 1 ESCHERICHIA COLI 206-233 PNHAB_ECOLI NA(+)/H(+) ANTIPORTER 2 ESCHERICHIA COLI 271-305 PNHAB_PSECL NITRILE HYDRATASE SUBUNIT BETA PSEUDOMONAS CHLORORAPHIS 71-101 PNHBI_RHORH NITRILE HYDRATASE SUBUNIT BETA RHODOCOCCUS RHODOCHROUS 63-93 PNIFA_AZOBR NIF-SPECIFIC REGULATORY PROTEIN AZOSPIRILLUM BRASILENSE 7-44 PNIFA_BRAJA NIF-SPECIFIC REGULATORY PROTEIN BRADYRHIZOBIUM JAPONICUM 252-279 PNIFA_HERSE NIF-SPECIFIC REGULATORY PROTEIN HERBASPIRILLUM SEROPEDICAI 9-51 162-203 327-354 PNIFA_RHIME NIF-SPECIPIC REGULATORY PROTEIN RHIZOBIUM LEGUMINOSARUM 100-127 PNIFA_RHIME NIF-SPECIFIC REGULATORY PROTEIN RHIZOBIUM MELILOTI 171-198 PNIFA_RHOCA NIF-SPECIFIC REGULATORY PROTEIN RHODOBACTER CAPSULATUS 260-287 PNIFB_AZOVI NIFB PROTEIN AZOTOBACTER VINELANDII 342-369 PNIFB_KLEPN NIFB PROTEIN KLEBSIELLA PNEUMONIAE 154-181 PNIFD_ANASP NITROG MOLYBD-IRON PROTEIN ANABAENA SP 374-401 PNIFD_AZOBR NITROG MOLYBD-IRON PROTEIN AZOSPIRILLUM BRASILENSE 377-404 PNIFD_PLEBO NITROG MOLYRD-IRON PROTEIN PLECTONEMA BORYANUM 387-414 PNIFD_THIFE NITROG MOLYRD-IRON PROTEIN THIO BACILLUS FERROOXIDANS 383-410 PNIFE_CLPOA BIOSYNTHESIS PROTEIN NIFE CLOSTRIDIUM PASTEURIANUM 359-386 PNIFH_FRASR NITROGENASE IRON PROTEIN FRANKIA SP 56-83 PNIFH_PLEBO NITROGENASE IRON PROTEIN PLECTONEMA BORYANUM 267-294 PNIFK_AZOBR NITROG MOLYBD-IRON PROTEIN AZOSPIRILLUM BRASILENSE 430-457 PNIFK_BRASA NITROG MOLYBD-IRON PROTEIN BRADYRHIZOBIUM JAPONICUM 483-510 PNTFK_BRASP NITROG MOLYBO-IRON PROTEIN BRADYRHIZOBIUM SP 478-506 PNIPK_CLOPA NITROG MOLYBO-IRON PROTEIN CLOSTRIDIUM PASTEURIANUM 227-254 PNIFK_THIFE NITROG MOLYOD-IRON PROTEIN THIO BACILLUS FERROOXIDANS 479-590 PNIFM_AZOCH NIFM PROTEIN AZOTOBACTER CHROOCOCCUM MCD I 265-292 PNIFN_BRAJA BIOSYNTHESIS PROTEIN NIFN BRADYRHIZOBIUM JAPONICUM 339-366 PNIFS_ANASP NIFS PROTEIN ANABAENA SP 112-139 PNIFS_LACDE NIFS PROTEIN HOMOLOG LACTOBACILLUS DELBRUECKII 59-86 PNIFT_AZOVI NIFT PROTEIN AZOTOBACTER VINELANDII 6-33 PNIFU_ANASL NIFU PROTEIN ANABAENA SP 7-49 PNIFU_ANASP NIFU PROTEIN ANABAENA SP 148-178 PNIFU_KLEPN NIFU PROTEIN KLEBSIELLA PNEUMONIAE 66-93 PNIKA_ECOLI NICKEL TRANSPORT PROTEIN NIKA ESCHERICHIA COLI 122-149 282-309 456-483 PRECURSOR PNIKE_ECOLI NICKEL TRANSPORT PROTEIN NIKE ESCHERICHIA COLI 177-204 PNIRB_ECOLI NITRITE REDUCTASE ESCHERICHIA COLI 54-81 345-372 PNIRC_ECOLI NIRC PROTEIN ESCHERICHIA COLI 212-239 PNIRS_PSEST PSEUDOMONAS CYTOCHROME PSEUDOMONAS STUTZERI 303-333 OXIDASE PRECURS PNISB_LACLA 117 KD MEMBRANE ASSOCIATED PROTEIN LACTOCOCCUS LACTIS 202-229 287-332 663-697 886-920 PNISC_LACLA NISIN BIOSYNTHESIS PROTEIN NISC LACTOCOCCUS LACTIS 52-92 140-188 PNIST_LACLA NISIN TRANSPORT PROTEIN NIST LACTOCOCCUS LACTIS 223-257 278-305 426-470 PNIVA_CLOPA HOMOCITRATE SYNTHASE, CLOSTRIDIUM PASTEURIANUM 100-127 234-268 ALPHA SUBUNIT PNIVO_CLOPA HOMOCITRATE SYNTHASE. CLOSTRIDIUM PASTEURIANUM 63-94 103-132 213-240 283-310 OMEGA SUBUNIT PNMPC_ECOLI PORON PROTEIN NMPC PRECURSOR ESCHERICHIA COLI 22-49 69-96 335-362 PNODC_BRASP NODULATION PROTEIN C BRADYRHIZOBIUM SP 3-30 PNODC_RHILO NODULATION PROTEIN C RHIZOBIUM LOTI 286-313 PNODC_RHILT NODULATION PROTEIN C RHIZOBIUM LEGUMINOSARUM 14-48 PNODF_RHILV NODULATION PROTEIN F RHIZOBIUM LEGUMINOSARUM 31-58 PNODP_RHIMS NODULATION PROTEIN F RHIZOBIUM MELILOTI 39-66 PNODG_RHIME NODULATION PROTEIN G RHIZOBIUM MELILOTI 8-35 PNODG_RHIMS NODULATION PROTEIN G RHIZOBIUM MELILOTI 8-35 PNODL_RHILV NODULATION PROTEIN L RHIZOBIUM LEGUMINOSARUM 26-53 PNODQ_AZOBR NODULATION PROTEIN Q AZOSPIRILLUM BRASILENSE 60-87 PNODT_RHILT NODULATION PROTEIN T RHIZOBIUM LEGUMINOSARUM 104-134 355-382 420-454 PNODT_RHILV NODULATION PROTEIN T RHIZOBIUM LEGUMINOSARUM 364-391 416-443 PNODU_RHIFR NODULATION PROTEIN U RHIZOBIUM FREDII 506-536 PNODV_BRAJA NODULATION PROTEIN V BRADYRHIZOBIUM JAPONICUM 378-419 739-766 PNODX_RHILV NODULATION PROTEIN X RHIZOBIUM LEGUMINOSARUM 232-259 PNOLB_RHIFR NODULATION PROTEIN NOLB RHIZOBIUM FREDII 133-160 PNOLR_RHIME NODULATION PROTEIN NOLR RHIZOBIUM MELILOTI 88-115 PNOSD_PSEST NOSD PROTEIN PRECURSOR PSEUDOMONAS STUTZERI 319-346 PNOSR_PSEST REGULATORY PROTEIN NOSR PSEUDOMONAS STUTZERI 127-154 PNOSZ_PSEAE NITROUS-OXIDE REDUCTASE PRECURSOR PSEUDOMONAS AERUGINOSA 267-294 PNOSZ_PSEST NITROUS-OXIDE REDUCTASE PRECURSOR PSEUDOMONAS STUTZERI 557-591 PNPRE_BACAM BACILLOLYSIN PRECURSOR BACILLUS AMYLOLIQUEFACIENS 113-147 217-244 PNPRE_BACPO BACILLOLYSIN PRECURSOR BACILLUS POLYMYXA 57-91 187-228 PNPRE_BACSU BACILLOLYSIN PRECURSOR BACILLUS SUBTILIS 116-146 307-334 PNQO5_PARDE NADH-UBIQUINONE OXIDOREDUCTASE PARACOCCUS DENITRIFICANS 4-45 21 KD CHAIN PNQO9_PARDE NADH-UBIQUINONE OXIDOREDUCTASE PARACOCCUS DENITRIFICANS 125-152 20 KD CHAIN PNRDD_ECOLI ANAER RIBONUC-TRIPHOS REDUCTASE ESCHERICHIA COLI 91-125 PNRFA_ECOLI CYTOCHROME C552 PRECURSOR ESCHERICHIA COLI 319-346 PNRFG_ECOLI NRFG PROTEIN ESCHERICHIA COLI 72-111 PNRLI_RHORH ALIPHATIC NITRILASE RHODOCOCCUS RHODOCHROUS 109-136 PNSR_LACLA NISIN-RESISTANCE PROTEIN LACTOCOCCUS LACTIS 52-79 135-162 PNTCA_ANASP DNA-BINDING PROTEIN VF1 ANABAENA SP 65-92 PNTCA_SYNP7 GLOBAL NITROGEN REGULATOR SYNECHOCOCCUS SP 44-91 PNTCA_SYNY3 GLOBAL NITROGEN REGULATOR SYNECHOCYSTIS Sr 67-94 PNTRB_VIBAL NITROGEN REGULATION PROTEIN VIBRIO ALGINOLYTICUS 194-223 PNTRC_PROVU NITROGEN REGULATION PROTEIN PROTEUS VULGARIS 385-412 PNTRC_RHIME NITROGEN ASSIMILATION REGULATORY RHIZOBIUM MELILOTI 451-478 PROTEIN PNU2C_SYNP7 NADH-PLASTOQUINONE SYNECHOCOCCUS SP 80-107 OXIDOREDUCTASE CHAIN PNU4C_SYNY3 NADH-PLASTOQUINONE SYNECHOCYSTIS SP 27-54 OXIDOREDUCTASE CHAIN PNUSC_SYNP2 NADH-PLASTOQUINONE SYNECHOCOCCUS SP 614-641 OXIDOREDUCTASE CHAIN PNUJC_SYNY3 PROB NADH-UBIQUINONE SYNECHOCYSTIS SP 163-190 OXIDOREDUCTASE SUBU PNUKC_SYNY3 PROB NADH-UBIQUINONE SYNECHOCYSTIS SP 169-199 OXIDOREDUCTASE SUBU PNULX_SYNY3 NADH-PLASTOQUINONE SYNECHOCYSTIS SP 46-80 OXIDOREDUCTASE CHAIN PNUOG_ECOLI NADH DEHYDROGENASE I CHAIN G ESCHERICHIA COLI 368-402 PNUOL_ECOLI NADH DEHYDROGENASE I CHAIN L ESCHERICHIA COLI 30-57 496-523 PNUON_ECOLI NADH DEHYDROGENASE I CHAIN N ESCHERICHIA COLI 392-419 PNUPC_ECOLI NUCLEOTIDE PERMEASE ESCHERICHIA COLI 13-43 134-164 356-383 PNUSA_ECOLI NUSA PROTEIN ESCHERICHIA COLI 21-62 PNUSB_ECOLI NUTILIZATION SUBSTANCE ESCHERICHIA COLI 17-65 70-97 PROTEIN B PNUSG_ECOLI TRANSCRIPTION ANTITERMINATION ESCHERICHIA COLI 141-168 PROTEIN NUS PNUSG_THEMA TRANSCRIPTION ANTITERMINATION THERMOTOGA MARITIMA 203-230 PROTEIN NUS PNYLB_FLASP 6-AMINOHEXANOATE-DIMER HYDROLASE FLAVOBACTERIUM SP 223-250 PNYLC_FLASP 6-AMINOHEXANOATE-DIMER HYDROLASE FLAVOBACTERIUNI SP 223-250 PO16G_BACCE OLIGO-1,6-GLUCOSIDASE BACILLUS CEREUS 301-328 POCCT_AGRT6 OCTOPINE-BINDING PROTEIN AGROBACTERIUM TUMEFACIENS 172-202 T PRECURSOR PODO1_AZOVI 2-OXOGLUTARATE DEHYDROGENASE AZOTOBACTER VINELANDII 829-856 E1 COMPONE PODO1_BACSU 2-OXOGLUTARATE DEHYDROGENASE BACILLUS SUBTILIS 487-524 809-850 E1 COMPONE PODO1_ECOLI 2-OXOGLUTARATE DEHYDROGENASE ESCHERICHIA COLI 6-33 E1 COMPOSE PODO2_BACSU DIHYDROLIPOAMIDE SUC-TRANSF BACILLUS SUBTILIS 30-60 COMP PODOB_PSEPU 2-OXOGLUTARATE DEHYDROGENASE PSEUDOMONAS PUTIDA 223-254 E1 COMPONE POMP1_ECOLI PYRUVATE DEHYDROGENASE E1 ESCHERICHIA COLI 624-651 COMPONENT PODP2_AZOVI DIHYDROLIPOAMIDE ACETRANS COMP AZOTOBACTER VINELANDII 518-545 POMP2_ECOLI PYRUVATE DEHYDROGENASE ESCHERICHIA COLI 14-41 117-144 PODPA_BACST PYRUVATE DEHYDROGENASE E1 BACILLUS STEAROTHERMOPHILUS 299-333 COMPANY PODPA_BACSU PYRUVATE DEHYDROGENASE E1 BACILLUS SUBTILIS 305-332 COMPANY PODPB_BACST PYRUVATE DEHYDROGENASE E1 BACILLUS STEAROTHERMOPHILUS 23-50 COMPANY PODPB_BACSU PYRUVATE DEHYDROGENASE E1 BACILLUS SUBTILIS 16-50 COMPANY POMIE_CHLTR 15 KD CYSTEINE-RICH PROTEIN, CHLAMYDIA TRACHOMATIS 38-65 SEROVAR E POMA1_NEIGO OUTER MEMBRANE PROTEIN NEISSERIA GONORRHOEAE 63-90 PI.A PRECUSOR POMA1_NEIME OUTER MEMBRANE PROTEIN NEISSERIA MENINGITIDIS 359-386 PI.A PRECUSOR POMA2_NEIME OUTER MEMBRANE PROTEIN NEISSERIA MENINGITIDIS 353-380 PI.A PRECUSOR POMB1_NEIGO OUTER MEMBRANE PROTEIN NEISSERIA GONORRHOEAE 63-90 P.IB PREC SOR POMB1_NEIME OUTER MEMBRANE PROTEIN NEISSERIA MENINGITIDIS 63-90 P.IB PRECUESOR POMB2_NEIGO OUTER MEMBRANE PROTEIN NEISSERIA GONORRHOEAE 63-90 P.IB PRECURSOR POMB2_NEIME OUTER MEMBRANE PROTEIN NEISSERIA MENINGITIDIS 63-90 P.IB PRECURSOR POMB3_NEIME OUTER MEMBRANE PROTEIN NEISSERIA MENINGITIDIS 63-90 P.IB PRECURSOR POMB4_NEIME OUTER MEMBRANE PROTEIN NEISSERIA MENINGITIDIS 24-51 63-90 P.IB PRECURSOR POMB_NEILA OUTER MEMBRANE PROTEIN NEISSERIA LACTAMICA 116-143 P.IB PRECURSOR POMB_NEISI OUTER MEMBRANE PROTEIN NEISSERIA SICCA 24-51 63-90 P.IB PRECURSOR POMLA_ACTPL OUTER MEMBRANE LIPOPROTEIN ACTINO BACILLUS PLEUROPNEUMONIAE 114-151 PRECURSOR POMP1_HAEIN OUTER MEMBRANE PROTEIN P1 HAEMOPHILUS INTLUENZAE 154-184 303-330 341-368 PRECURSOR POMP2_HAEIN OUTER MEMBRANE PROTEIN P2 HAEMOPHILUS INFLUENZAE 16-71 220-254 326-353 PRECURSOR POMP3_NEIGO OUTER MEMBRANE PROTEIN P-111 NEISSERIA GONORRHOCAC 14-41 PRECURSOR POMP7_STAAU 70 KD OUTER MEMBRANE PROTEIN STAPHYLOCOCCUS AUREUS 53-80 88-115 PRECURSOR POMPA_THEMA OUTER MEMBRANE PROTEIN ALPHA THERMOTOGA MARITIMA 100-138 151-178 183-249 255-292 301-328 351-385 PRECURSOR POMPC_ECOLI OUTER MEMBRANE PROTEIN C ESCHERICHIA COLI 20-47 64-94 PRECURSOR POMPC_NEIGO OUTER MEMBRANE PROTEIN C NEISSERIA GONORRHOEAE 89-123 PRECURSOR POMPC_SALTI OUTER MEMBRANE PROTEIN C SALMONELLA TYPHI 166-193 PRECURSOR POMPF_ECOLI OUTER MEMBRANE PROTEIN F ESCHERICHIA COLI 21-55 231-258 PRECURSOR POMPH_PHOS9 OMPH PROTEIN PHOTOBACTERIUM SP 292-319 POMPT_ECOLI PROTEASE VII PRECURSOR ESCHERICHIA COLI 37-64 POP65_NEIGO OPACITY PROTEIN OPA65 NEISSERIA GONORRHOEAE 71-111 POP67_NEIGO OPACITY PROTEIN OPA67 NEISSERIA GONORRHOEAE 72-109 POPAA_NEIGO OPACITY PROTEIN OPA53 NEISSERIA GONORRHOEAE 71-123 140-167 POPAG_NEIGO OPACITY PROTEIN OPA52 NEISSERIA GONORRHOEAE 80-107 140-167 POPAI_NEIGO OPACITY PROTEIN OPA54 NEISSERIA GONORRHOEAE 80-107 POPAJ_NEIGO OPACITY PROTEIN OPA58 NEISSERIA GONORRHOEAE 71-105 POPAK_NEIGO OPACITY PROTEIN OPA57 NEISSERIA GONORRHOEAE 71-105 POPDA_ECOLI OLIGOPEPTIDASE A ESCHERICHIA COLI 147-174 POPDA_SALTY OLIGOPEPTIDASE A SALMONELLA TYPHIMURIUM 147-174 POPDE_PSEAE TRANSCRIPTION FACTOR OPDE PSEUDOMONAS AERUGINOSA 64-91 POPPA_ECOLI OLIGOPEPTIDE-BINDING PROTEIN ESCHERICHIA COLI 402-432 PRECURSOR POPPB_SALTY OLIGOPEPTIDE PERMEASE PROTEIN SALMONELLA TYPHIMURIUM 265-299 OPPB POPR1_NEIME OPACITY-RELATED PROTEIN POPM1 NEISSERIA MENINGITIDIS 108-135 POPR3_NEIME OPACITY-RELATED PROTEIN POPM3 NEISSERIA MENINGITIDIS 94-135 POSMC_ECOLI OSMOTICALLY INDUCIBLE PROTEIN ESCHERICHIA COLI 5-32 OSMC POSPA_BORBU OUTER SURFACE PROTEIN A BORRELIA BURGDORFERI 63-100 112-139 157-204 223-271 PRECURSOR POSPB_BORBU OUTER SURFACE PROTEIN B BORRELIA BURGDORFERI 113-259 262-296 PRECURSOR POTC2_BACSU ORNITHINE CARBAMOYLTRANSTERASE BACILLUS SUBTILIS 188-215 POTCC_PSEAE ORNITHINE CARBAMOYLTRANSTERASE PSEUDOMONAS AERUGINOSA 17-44 POTCC_PSEPU ORNITHINE CARBAMOYLTRANSTERASE PSEUDOMONAS PUTIDA 3-33 POUTB_BACSU SPORE OUTGROWTH FACTOR B BACILLUS SUBTILIS 225-252 POUTO_ERWCA LEADER PEPTIDASE ERWINIA CAROTOVORA 189-216 PP18K_STRPA 18 KD PROTEIN IN FIMA 3′REGION STREPTOCOCCUS PARASANGUIS 115-149 PP18K_STRSA 18 KD PROTEIN IN SSAB 3′REGION STREPTOCOCCUS SANGUIS 10-37 114-148 PP1P_LACLC PI-TYPE PROTEINASE PRECURSOR LACTOCOCCUS LACTIS 107-155 904-950 1073- 1223- 1466- 1625- 1100 1250 1496 1655 PP29_MYCHR PROTEIN P29 MYCOPLASMA HYORHINIS 5-56 101-160 202-246 PP2P_LACLA PII-TYPE PROTEINASE PRECURSOR LACTOCOCCUS LACTIS 107-155 904-950 1073- 1223- 1446- 1625- 1100 1250 1496 1655 PP2P_LACPA PII-TYPE PROTEINASE PRECURSOR LACTOBACILLUS PARACASEI 107-155 904-941 1073- 1223- 1446- 16258 1100 1250 1496 1655 PP30_ECOLI P30 PROTEIN ESCHERICHIA COLI 55-82 PP34_RICRI PROTEIN P34 RICKETTSIA RICKETTSII 9-47 135-173 PP37_MYCHR PROTEIN P37 PRECURSOR MYCOPLASMA HYORHINIS 38-75 PP3P_LACLC PIII-TYPE PROTEINASE PRECURSOR LACTOCOCCUS LACTIS 107-155 904-950 1073- 1223- 1446- 1628- 1100 1250 1496 1655 PP47K_PSECL 47 KD PROTEIN PSEUDOMONAS CHLORORAPHIS 288-315 PP54_ENTFC P54 PROTEIN PRECURSOR ENTEROCOCCUS FAECIUM 58-92 141-209 PP60_LISGR PROTEIN P60 PRECURSOR LISTERIA GRAYI 31-61 101-142 300-334 431-458 PP60_LISIN PROTEIN P60 PRECURSOR LISTERIA INNOCUA 67-94 102-143 PP60_LISIV PROTEIN P60 PRECURSOR LISTERIA IVANOVII 101-140 315-359 PP60_LISMO PROTEIN P60 PRECURSOR LISTERIA MONOCYTOGENES 103-144 PP60_LISSE PROTEIN P60 PRECURSOR LISTERIA SEELIGERI 101-140 270-298 321-365 395-422 PP60_LISWE PROTEIN P60 PRECURSOR LISTERIA WELSHIMERI 113-140 317-361 396-423 PP69_MYCHR PROTEIN P69 MYCOPLASMA HYORHINIS 264-295 421-464 487-517 544-575 PPABA_BACSU ADC SYNTHASE BACILLUS SUBTILIS 12-41 PPABC_BACSU 4-AMINO-4- BACILLUS SUBTILIS 250-277 DEOXYCHORISMATE LYASE PPABC_ECOLI 4-AMINO-4- ESCHERICHIA COLI 140-167 DEOXYCHRISMATE LYASE PPABL_STRGR PROTEIN Y STREPTOMYCES GRISEUS 52-79 PPAC_ARTVI PENICILLIN ACYLASE PRECURSOR ARTHROBACTER VISCOSUS 170-197 333-363 571-606 640-674 PPAC_BACSH PENICILLIN ACYLASE BACILLUS SPHAERICUS 232-259 PPAC_STRMU PAC PROTEIN PRECURSOR STREPTOCOCCUS MUTANS 146-276 281-465 538-565 576-630 1075- 1159- 1381- 1102 1186 1434 PPAI1_BACSU REGULATORY PROTEIN PAI 1 BACILLUS SUBTILIS 103-137 PPAI2_BACSU REGULATORY PROTEIN PAI 2 BACILLUS SUBTILIS 145-172 PPAPE_ECOLI FIMBRIAL PROTEIN PAPE ESCHERICHIA COLI 42-69 86-123 PPAPF_ECOLI MINOR FIMBRIAL PROTEIN PAPF ESCHERICHIA COLI 4-31 PPAPG_ECOLI FIMBRIAL PROTEIN PAPG ESCHERICHIA COLI 282-316 PRECURSOR PPARA_AGRTU PARA PROTEIN AGROBACTERIUM TUMEFACIENS 60-87 PPARB_ECOLI PLASMID PARTITION PAR B PROTEIN ESCHERICHIA COLI 117-154 249-283 PPARE_ECOLI TOPOISOMERASE IV SUBUNIT B ESCHEIUCHIA COLI 444-471 526-553 PPARE_SALTY TOPOISOMERASE IV SUBUNIT B SALMONELLA TYPHIMURIUM 444-471 526-553 PPA_BACAR PROTECTIVE ANTIGEN PRECURSOR BACILLUS ANTHRACIS 13-52 125-152 296-335 585-615 650-684 PPBP2_ECOLI PENICILLIN-BINDING PROTEIN 2 ESCHERICHIA COLI 95-122 178-205 207-241 PPBP2_NEIGO PENICILLIN-BINDING PROTEIN 2 NEISSERIA GONORRHOEAE 193-220 PPBP2_NEIME PENICILLIN-BINDING PROTEIN 2 NEISSERIA MENINGITIDIS 193-220 PPBP2_STRPN PENICILLIN-BINDING PROTEIN 2B STREPTOCOCCUS PNEUMONIAE 144-183 216-243 259-286 605-632 PPBP3_ECOLI PENICILLIN-BINDING PROTEIN 3 PRECURSOR ESCIIERICHIA COLI 224-251 334-368 PPBP4_BACSU PENICILLIN-BINDING PROTEIN 4* BACILLUS SUBTILIS 374-401 PPBP4_ECOLI PENICILLIN-BINDING PROTEIN 4 ESCHERICHIA COLI 336-363 PRECURSOR PPBPA_ECOLI PENICILLIN-BINDING PROTEIN 1A ESCHERICHIA COLI 145-172 PPBPB_ECOLI PENICILLIN-BINDING PROTEIN 1B ESCHERICHIA COLI 62-96 263-290 PPBPX_STRPN PENICILLIN-BINDING PROTEIN 2X STREPTOCOCCUS PNEUMONIAE 89-116 706-733 PPCAB_STAAU PENICILLIN-BINDING PROTEIN STAPHYLOCOCCUS AUREUS 78-108 176-203 263-324 502-529 PPCAB_PSEPU CYCLOISOMERASE PSEUDOMONAS PUTIDA 115-142 226-253 PPEL3_ERWCA PECTATE LYASE III PRECURSOR ERWINIA CAROTOVORA 110-137 PPELA_ERWCA PECTATE LYASE A PRECURSOR ERWINIA CAROTOVORA 110-137 PPELB_ERWCA PECTATE LYASE B PRECURSOR ERWINIA CAROTOVORA 110-137 PPELC_ERWCA PECTATE LYASE C PRECURSOR ERWINIA CAROTOVORA 110-137 PPELF_ERWCH PECTATE LYASE E PRECURSOR ERWINIA CHRYSANTHEMI 40-67 209-243 PPELP_ERWCA PERIPLASMIC PECTATE LYASE PRECURSOR ERWINIA CAROTOVORA 455-482 PPELP_YERPS PERIPLASMIC PECTATE LYASE PRECURSOR YERSINIA PSEUDOTUBERCULOSIS 459-489 PPELX_ERWCA PUTATIVE PECTATE LYASE X PRECURSOR ERWINIA CAROTOVORA 188-218 PPELX_ERWCH EXOPOLYGALACTURONATE LYASE PRECURSOR ERWINIA CHRYSANTHEMI 466-493 PPEPD_ECOLI AMINOACYL-HISTIDINE DIPEPTIDASE ESCHERICHIA COLI 264-314 PPEPQ_ECOLI X-PRO DIPEPTIDASE ESCHEIUCHIA COLI 251-278 PPERT_BORER PERTACTIN PRECURSOR BORDETELLA BRONCHISEPTICA 617-644 PPERT_BORPA PERTACTIN PRECURSOR BORDETELLA PARAPERTUSSIS 628-655 PPERT_BORPE PERTACTIN PRECURSOR BORDETELLA PERTUSSIS 616-643 PPGK_CORGL PHOSPHOGLYCERATE KINASE CORYNEBACTERIUM GLUTMICUM 83-117 PPGK_ECOLI PHOSPHOGLYCERATE KINASE ESCHERICHIA COLI 186-216 PPGK_METER PHOSPHOGLYCERATE KINASE METHANOBACTERIUM BRYANTII 36-63 PPGK_THETH PHOSPHOGLYCERATE KINASE THERMUS AQUATICUS 222-249 PPGLI_ERWCA ENDO-POLYOALACTURONASE ERWINIA CAROTOVORA 237-271 PPGTE_SALTY OUTER MEMBRANE PROTEASE SALMONELLA TYPHIMURIUM 66-93 PPHA1_FREDI C-PHYCOCYANIN-1 ALPHA CHAIN FREMYELLA DIPLOSIPHON 21-48 PPHA2_FREDI C-PHYCOCYANIN-2 ALPHA CHAIN FREMYELLA DIPLOSIPHON 21-48 PPHAA_PSEOL POLY(3-HYDROXYALKANOATE) POLYMERASE I PSEUDOMONAS OLEOVORANS 264-291 PPHAB_ANACY ALLOPHYCOCYANIN BETA CHAIN ANABAENA CYLINDRICA 7-48 PPHAB_ANAVA ALLOPHYCOCYANIN BETA CHAIN ANABAENA VARIABILIS 14-48 PPHAB_FREDI ALLOPHYCOCYANIN BETA CHAIN FREMYELLA DIPLOSIPHON 8-49 PPHAB_MASLA ALLOPHYCOCYANIN BETA CHAIN MASTIGOCLADUS LAMINOSUS 14-41 PPHAB_SYNP6 ALLOPHYCOCYANIN BETA CHAIN SYNECHOCOCCUS SP 14-41 PPHAC_SYNP6 ALLOPHYCOCYANIN ALPHA-B CHAIN SYNECHOCOCUS SP 33-60 PPHAG_FREDI ALLOPHYCOCYANIN GAMMA CHAIN FREMYELLA DIPLOSIPHON 32-59 PPHB3_FREDI C-PHYCOCYANIN-3 BETA CHAIN FREMYELLA DIPLOSIPHON 29-56 PPHBB_ALCEU ACETOACETYL-COA REDUCTASE ALCALIGENES EUTROPHUS 55-85 PPHCA_SYNYI C-PHYCOCYANIN ALPHA CHAIN SYNECHOCYSTIS SP 21-55 PPHCB_SYNP6 C-PHYCOCYANIN BETA CHAIN SYNECHOCOCCUS SP 28-55 PPHCB_SYNP7 C-PHYCOCYANIN BETA CHAIN SYNECHOCOCCUS SP 28-55 PPHCB_SYNYI C-PHYCOCYANIN BETA CHAIN SYNECHOCYSTIS SP 21-55 PPHEA_ECOLI CHORISMATE MUTASE ESCHERICHIA COLI 10-37 PPHEA_ERWHE CHORISMATE MUTASE ERWINIA HERBICOLA 10-37 159-186 252-286 PPHEA_PSESP PHENOL 2-MONOOXYGENASE PSEUDOMONAS SP 171-201 282-314 437-464 PPHEB_MASLA PHYCOERYTHROCYANIN BETA CHAIN MASTIGOCLADUS LAMINOSUS 21-62 PPHEB_PSESP CATECHOL 1,2-DIOXYGENASE PSEUDOMONAS SP 24-51 PPHEG_SYNPY LINKER POLYPEPTIDE SYNECHOCOCCUS SP 158-185 PPHEP_ECOLI PHENYLALANINE-SPECIFIC PERMEASE ESCHERICHIA COLI 284-311 PPHFI_CLOPA PERIPLASMIC (FE) HYDROGENASE I CLOSTRIDIUM PASTEURIANUM 434-471 PPHLI_BACCE SPHINGOMYELINASE C PRECURSOR BACILLUS CEREUS 2-36 PPHL2_BACCE SPHINGOMYELINASE C PRECURSOR BACILLUS CEREUS 2-36 PPHL3_BACCE SPHINGOMYELINASE C PRECURSOR BACILLUS CEREUS 2-36 PPHLC_BACCE PHOSPHOLIPASE C PRECURSOR BACILLUS CEREUS 32-59 179-206 PPHLC_CLOBI PHOSPHOLIPASE C PRECURSOR CLOSTRIDIUM BIFERMENTANS 50-77 335-365 PPHLC_CLOPE PHOSPHOLIPASE C PRECURSOR CLOSTRIDIUM PERFRINGENS 210-237 369-398 PPHLC_LISMO PHOSPHOLIPASE C PRECURSOR LISTERIA MONOCYTOGENES 147-174 PPHLC_PSEAE HEMOLYTIC PHOSPHOLIPASE C PSEUDOMONAS AERUGINOSA 685-712 PRECURSOR PPHLC_STAAU PHOSPHOLIPASE C PRECURSOR STAPHYLOCOCCUS AUREUS 6-33 PPHLD_BACCE PHOSPHOLIPASE C PRECURSOR BACILLUS CEREUS 179-206 PPHL_LEPIN SPHINGOMYELINASE C PRECURSOR LEPTOSPIRA INTERROGANS 30-57 394-428 PPHND_ECOLI PHND PROTEIN ESCHERICHIA COLI 296-326 PPHNK_ECOLI PHNK PROTEIN ESCHERICHIA COLI 178-205 PPHNM_ECOLI PHNM PROTEIN ESCHERICHIA COLI 5-35 PPHOE_CITFR OUTER MEMBRANE PORE PROTEIN CITROBACTER FREUNDII 13-40 47-105 E PRECURSOR PPHOE_ECOLI OUTER MEMBRANE PORE PROTEIN ESCHERICHIA COLI 13-40 64-105 168-195 226-253 E PRECURSOR PPHOE_KLEOX OUTER MEMBRANE PORE PROTEIN KLEBSIELLA OXYTOCA 13-40 64-91 E PRECURSOR PPHOE_KLEPN OUTER MEMBRANE PORE PROTEIN KLIBSIELLA PNEUMONIAE 3-40 64-105 E PRECURSOR PPHOE_SALTY OUTER MEMBRANE PORE PROTEIN SALMONELLA TYPHIMURIUM 63-104 320-347 E PRECURSOR PPHOP_BACSU ALK PHOS SYNTHESIS TRANS BACILLUS SUBTILIS 185-219 REG PROTEIN PPHOQ_ECOLI SENSOR PROTEIN PHOQ ESCHERICHIA COLI 244-278 PPHOQ_SALTY VIRULENCE SENSOR PROTEIN PHOQ SALMONELLA TYPHIMURIUM 226-260 PPHOR_BACSU ALK PHOS SYNTHESIS SENSOR BACILLUS SUBTILIS 89-145 387-425 PROTEIN PHOR PPHRA_ECOLI PHOTOREPAIR PROTEIN PHRA ESCHERICHIA COLI 63-90 207-241 PPHRA_SYNPY R-PHYCOCYANIN II ALPHA CHAIN SYNECHOCOCCUS SP 20-47 PPHRA_SYNPZ R-PHYCOCYANIN II ALPHA CHAIN SYNECHOCOCCUS SP 20-47 PPHSG_ECOLI GLYCOGEN PHOSPHORYLASE ESCRERICHIA COLI 157-184 488-515 PPHSM_ECOLI MALTODEXTRIN PHOSPHORYLASE ESCHERICIIIA COLI 71-108 PPILA_NEIGO PROD SIGNAL RECOGNITION NEISSERIA GONORRHOEAE 17-68 PARTICLE PROTEIN PPILB_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILB PSEUDOMONAS AERUGINOSA 16-60 PPILC_PSEAE PILC PROTEIN PSEUDOMONAS AERUGINOSA 143-170 PPILD_NEIGO LEADER PEPTIDASE NEISSERIA GONORRHOEAE 110-137 PPILQ_PSEAE FIMBRIAL ASSENIBLY PROTEIN PSEUDOMONAS AERUGINOSA 71-115 639-666 PILQ PRECURSOR PPILS_PSEAE SENSOR PROTEIN PILS PSEUDOMONAS AERUGINOSA 9-46 PPIR_ECOLI P1 PROTEIN ESCHERICHIA COLI 156-188 PPIV_MORBO PILIN GENE INVERTING PROTEIN MORAXELLA BOVIS 42-69 152-182 PPIV_MORLA PILIN GENE INVERTING PROTEIN MORAXELLA LACUNATA 152-182 PPLC_BACCE PHOSPHODIESTERASE PRECURSOR BACILLUS CEREUS 217-245 PPLC_BACTU PHOSPHODIESTERASE PRECURSOR BACILLUS THUIUNGIENSIS 216-245 PPLC_LISMO PHOSPHODIESTERASE PRECURSOR LISTERSA MONOCYTOGENES 238-265 PPLSC_ECOLI ACYLTRANSFERASE ESCHERICHIA COLI 106-133 PPLSX_ECOLI PLSX PROTEIN ESCHERICHIA COLI 241-270 PPLYD_ERWCA PECTIN LYASE ERWINIA CAROTOVORA 27-92 PPMBA_ECOLI PMBA PROTEIN ESCHERICHIA COLI 9-50 PPME_ERWCH PECTINESTERASE PRECURSOR ERWINIA CHRYSANTHEMI 60-87 PPMGY_ECOLI PHOSPHOGLYCERATE MUTASE ESCHERICHIA COLI 82-116 PPMGY_ZYMM PHOSPHOGLYCERATE MUTASE ZYMOMONAS MOBILIS 13-40 80-110 PPNP_ECOLI POLYRIBONUC NUCLEOTIDYL ESCHERICHIA COLI 260-294 PPNUC_SALTY PNUC PROTEIN SALMONELLA TYPHIMURIUM 178-205 PPODK_BACSY PYRUVATE, ORTHOPHOSPHATE DIKINASE BACTEROIDES SYMBIOSUS 51-78 PPORE_PSESY OUTER MEMBRANE PORIN F PRECURSOR PSEUDOMONAS SYRINGAE 111-138 PPORF_PSEAE PORIN O PRECURSOR PSEUDOMONAS AERUGINOSA 390-424 PPORP_PSEAE PORIN P PRECURSOR PSEUDOMONAS AERUGINOSA 139-181 260-287 369-396 PPOTD_ECOLI BINDING PROTEIN PRECURSOR ESCHERICHIA COLI 320-347 PPOTE_ECOLI PUTRESCINE-ORNITHINE ANTIPORTER ESCHERICHIA COLI 91-118 PPOXB_ECOLI PYRUVATE DEHYDROGENASE ESCHERICHIA COLI 8-38 PPPB3_BACSU ALKALINE PHOSPHATASE III PRECURSOR BACILLUS SUBTILIS 109-150 433-460 PPPB4_BACSU ALKALINE PHOSPHATASE IV PRECURSOR BACILLUS SUBTILIS 85-123 336-363 PPPB_ECOLI ALKALINE PHOSPHATASE PRECURSOR ESCHERICHIA COLI 235-262 PPPB_ESCRE ALKALINE PHOSPHATASE PRECURSOR ESCHERICHIA FERGUSONII 236-263 PPPCE_FLAME PROLYL ENDOPEPTIDASE PRECURSOR FLAVOBACTERIUM MENINGOSEPTICUM 158-199 PPPCF_FLAME PROLYL ENDOPEPTIDASE PRECURSOR FLAVOBACTERIUM MENINGOSEPTICUM 158-199 256-283 PPPCK_ECOLI PHOSPHOENOLPYRUVATE ESCHERICHIA COLI 45-72 CARBOXYKINASE PPPDA_CLOPE PROTEIN A PRECURSOR CLOSTRIDIUM PERFRINGENS 73-107 PPPSA_ECOLI PHOSPHOENOLYPYRUVATE SYNTHASE ESCHERICHIA COLI 49-76 PPQQ2_ACICA COENZYME PQQ SYNTHESIS PROTEIN ACINETOBACTER CALCOACETICUS 40-74 II PPRCA_ANAVA CALCIUM DEPENDENT PROTEASE ANABAENA VARIABILIS 371-398 PRECURSOR PPRCA_THEAC PROTEASOME, ALPHA SUBUNIT THERMOPLASMA ACIDOPHILUM 88-115 PPRC_ECOLI TAIL-SPECIFIC PROTEASE PRECURSOR ESCHERICHIA COLI 158-192 366-393 PPREI_STAAU PLASMID RECOMBINATION ENZYME STAPHYLOCOCCUS AUREUS 27-78 152-179 264-347 PPRE2_STAAU PLASMID RECOMBINATION ENZYME STAPHYLOCOCCUS AUREUS 48-75 81-208 310-361 366-393 PPREA_LACPL PLASMID RECOMBINATION ENZYME LACTO BACILLUS PLANTARUM 37-71 291-318 PPRE_BACLI REGULATORY PROTEIN BACILLUS LICHENIFORMIS 2-40 PPRE_BACSP PLASMID RECOMBINATION ENZYME BACILLUS SP 181-224 288-345 PPRE_STRAG PLASMID RECOMBINATION ENZYME STREPTOCOCCUS AGALACTIAE 285-319 332-359 420-454 PPRFA_LISMO LISTERIOLYSIN REGULATORY PROTEIN LISTERIA MONOCYTOGENES 76-110 173-204 PPRIA_ECOLI PRIMOSOMAL PROTEIN N′ ESCHERICHIA COLI 218-245 PPRIM_BACSU DNA PRIMASE BACILLUS SUBTILIS 383-433 PPRIM_BUCAP DNA PRIMASE BUCHNERA APHIDICOLA 13-43 282-319 PPRIM_CLOAB DNA PRIMASE CLOSTRIDIUM ACETOBUTYLICUM 87-114 PPRIM_LACLA DNA PRIMASE LACTOCOCCUS LACTIS 269-296 PPRIM_RICPR DNA PRIMASE RICKETFSIA PROWAZEKII 10-37 245-286 477-504 526-593 PPRIS_DESDE PRISMANE PROTEIN DESULFOVIBRIO DESULFURICANS 30-57 PPRLB_ACHLY BETA-LYTIC METALLOENDOPEPTIDASE ACHROMOBACTER LYFICUS 317-344 PPRLB_LYSEN BETA-LYTIC METALLOENDOPEPTIDASE LYSOBACTER ENZYMOGENES 121-148 PPROI_LISMO ZINC METALLOPROTEINASE PRECURSOR LISTERIA MONOCYTOGENES 111-145 275-316 PPRO2_LISMO ZINC METALLOPROTEINASE PRECURSOR LISTERIA MONOCYTOGENES 111-145 PPROA_SERMA GAMMA-GLUTAMYL PHOSPHATE SERRATIA MARCESCENS 309-336 REDUCTASE PPROA_STAAU PROTEIN A PRECURSOR STAPHYLOCOCCUS AUREUS 2-29 PPROB_SERMA GLUTAMATE 5-KINASE SERRATIA MARCESCENS 7-34 PPROB_STRAG PROTEIN B STREPTOCOCCUS AGALACTIAE 58-85 PPROC_PSEAE PYRROLINE-5-CARBOXYLATE PSEUDOMONAS AERUGINOSA 148-175 REDUCTASE PPROH_BACSU PYRROLINE-S-CARBOXYLATE HOMOL BACILLUS SUBTILIS 200-227 REDUCTASE PPROP_ECOLI PROLINE/BETAINE TRANSPORTER ESCHERICHIA COLI 460-487 PPROV_ECOLI PERIPHERAL MEMBRANE PROTEIN ESCHERICHIA COLI 24-54 PROV PPROV_SALTY PERIPHERAL MEMBRANE PROTEIN SALMONELLA TYPHIMURIUM 24-54 PROV PPRRB_ECOLI PRRB PROTEIN ESCHERICHIA COLI 170-197 PPRRC_ECOLI ANTICODON NUCLEASE ESCHERICHIA COLI 282-309 PPRRD_ECOLI PRRD PROTEIN ESCHERICHIA COLI 278-305 PPRSA_BACSU PROTEIN EXPORT PROTEIN PRSA BACILLUS SUBTILIS 52-87 95-157 PRECURSOR PPRTA_STRGR PROTEASE A PRECURSOR STREPTOMYCES GRISEUS 56-110 PPRTC_ERWCH SECRETED PROTEASE C PRECURSOR ERWINIA CHRYSANTHEMI 103-130 PPRTC_PORGI COLLAGENASE PRECURSOR PORPHYROMONAS GINGIVALIS 285-312 PPRTD_ERWCH PROTEASES SECRETION PROTEIN PRTD ERWINIA CHRYSANTHEMI 328-355 PPRTE_BACNO EXTRACELLULAR SERINE PROTEASE BACTEROIDES NODOSUS 106-133 219-265 346-384 PRECURSOR PPRTE_ERWCH PROTEASES SECRETION PROTEIN PRTE ERWINIA CHRYSANTHEMI 108-135 158-192 231-290 PPRTF_ERWCH PROTEASES SECRETION PROTEIN PRTF ERWINIA CHRYSANTHEMI 280-310 PPRTM_LACLA PROTEASE MATURATION PROTEIN LACTOCOCCUS LACTIS 76-103 112-139 PRECURSOR PPRTM_LACLC PROTEASE MATURATION PROTEIN LACTOCOCCUS LACTIS 26-53 76-103 112-139 PRECURSOR PPRTM_LACPA PROTEASE MATURATION PROTEIN LACTO BACILLUS PARACASEI 76-103 112-139 PRECUSOR PPRTS_SERMA EXTRACELLULAR SERINE PROTEASE SERRATIA MARCESCENS 304-331 576-607 1007- PRECURSOR 1041 PPRTT_SERMA EXTRACELLULAR SERINE PROTEASE SERRATIA MARCESCENS 304-331 576-607 1007- PRECURSOR 1041 PPRTX_ERWCH SECRETED PROTEASE C PRECURSOR ERWINIA CHRYSANTHEMI 314-341 PPSAA_SYNEN CHLOROPHYLL A APOPROTEIN AI SYNECHOCOCCUS ELONGATUS NAEGEL 120-147 PPSAA_SYNE2 CHLOROPHYLL A APOPROTEIN AI SYNECHOCOCCUS SP 109-136 326-356 PPSAA_SYNVU CHLOROPHYLL A APOPROTEIN AI SYNECHOCOCCUS VULCANUS 120-147 PPSAA_SYNY3 CHLOROPHYLL A APOPROTEIN AI SYNECHOCYSTIS SP 44-71 120-147 338-368 PPSAB_YERPE CHAPERONE PROTCIN PSAB PRECURSOR VERSINIA PESTIS 244-271 PPSAD_SYNP6 PHOTOSYSTEM I REACTION CENTRE SYNECHOCOCCUS SP 11-38 SUBUNIT II PPSAE_YERPE PSAE PROTEIN PRECURSOR YERSINIA PESTIS 66-118 PPSBO_ANANI STABILIZING POLYPEPTIDE PRECURSOR ANACYSTIS NIDULANS 99-126 209-243 PPSPA_ECOLI PHAGE SHOCK PROTEIN A ESCHERICHIA COLI 55-82 PPSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN WOLINELLA SUCCINOGENES 114-141 A PRECURSOR PPSTS_ECOLI PHOSPHATE-BINDING PROTEIN ESCHERICHIA COLI 40-74 PRECURSOR PPTI_BACSU PHOSPHOTRANSFERASE BACILLUS SUBTILIS 26-60 PPTI_ECOLI PHOSPHPTRRANSFERASE ESCHERICHIA COLI 135-162 399-426 PPTI_SALTY PHOSPHPTRRANSFERASE SALMONELLA TYPIIIMURIUM 232-259 399-426 PPTI_STACA PHOSPHPTRRANSFERASE STAPHYLYOCOCCUS CARNOSUS 34-61 PPTI_STRSL PHOSPHPTRRANSFERASE STREPTOCOCCUS SALIVARIUS 34-61 198-232 PPT2B_ERWCH PHOSPHPTRRANSFERASE ENZYME II ERWINIA CIIRYSANTIIEMI 127-154 PPT2G_BACSU PHOSPHPTRRANSFERASE ENZYME II BACILLUS SUIITILIS 670-697 PPT2L_LACCA PHOSPHPTRRANSFERASE ENZYME II LACTOBACILLUS CASEI 537-564 PPT2L_LACLA PHOSPHPTRRANSFERASE ENZYME II LACTOCOCCUS LACTIS 183-214 409-436 PPT2L_STAAU PHOSPHOTRANSFERASE ENZYME II STAPHYLOCOCCUS ALREUS 421-448 530-553 PPT2M_ECOLI PHOSPHOTRANSFERASE ENZYME II ESCHERICHIA COLI 445-489 PPT2M_STACA PHOSPHOTRANSFERASE ENZYME II STAPHYLOCOCCUS CARNOSUS 388-415 PPT2N_ECOLI N-ACETYLOLUCOSAMINE-PERMEM-E ESCHERICHIA COLI 370-400 PPT2S_STRMU PHOSPHOTRANSFERASE ENZYME II STREPTOCOCCUS MUTANS 600-627 PPT3F_SALTY PHOSPHOTRANSPERASE FPR PROTEIN SALMONELLA TYPHIMURIUM 107-134 PPT3L_LACCA PHOSPHOTRANSFERASE FACTOR III LACTOBACILLUS CASEI 40-67 PPTHP_ECOLI PHOSPHOCARRIER PROTEIN HPR ESCHERICHIA COLI & 31-65 SALMONELLA TYPHIMURIUM PPTHP_KLEPN PHOSPHOCARRIER PROTEIN HPR KLEBSIELLA PNEUMONIAE 31-65 PPTRB_ECOLI PROTEASE II ESCHERICHIA COLI 94-121 217-251 PPULA_KLEAE PULLULANASE ELEBSIELLA AEROGENES 894-928 PPULA_KLEPN PULLULANASE KLEBSIELLA PNEUMONIAE 894-918 PPULO_KLEPN LEADER PEPTIDASE KLEBSIELLA PNEUMONIAE 178-205 PPULS_KLEPN PULS PRECURSOR ELEBSIELLA PNEUMONIAE 70-97 PPUPA_PSEPU UPTAKE PROTEIN PRECURSOR PSEUDOMONAS PUTIDA 112-162 210-237 429-463 736-763 PPURI_BACSU AMIDOPHOSPHORIBOSYLTRANSF PREC BACILLUS SUBTILIS 394-421 PPUR2_BACSU PHOSPHORIBOSYLAMINE-GLYCINE BACILLUS SUBTILIS 349-376 PPUR3_BACSU FORMYLTRANSFERASE BACILLUS SUBTILIS 149-176 PPUR3_ECOLI FORMYLTRANSPERASE ESCHERICHIA COLI 27-54 PPUR4_BACSU SYNTHASE I BACILLUS SUBTILIS 18-45 PPUR5_BACSU CYCLO-LIGASE BACILLUS SUBTILIS 153-194 PPUR6_ECOLI AIR CARBOXYLASE ESCHERICHIA COLI 131-158 PPUR7_BACSU SAICAR SYNTHETASE BACILLUS SUBTILIS 3-43 PPUR8_BACSU ADENYLOSUCCINATE LYASE BACILLUS SUBTILIS 56-130 226-253 PPUR8_ECOLI ADENYLOSUCCINATE LYASE ESCHERICHIA COLI 194-221 331-372 PPUR9_BACSU AICAR TRANSFORMYLASE BACILLUS SUBTILIS 19-53 345-372 PPUR9_ECOLI AICAR TRANSPORMYLASE ESCHERICHIA COLI 239-268 PPUR9_SALTY AICAR TRANSPORMYLASE SALMONELLA TYPHIMURIUM 218-247 PPURL_BACSU SYNTHASE II BACILLUS SUBTILIS 609-636 PPYGI_ANASP LINKER POLYPEPTIDE CPCGI ANABAENA SP 88-115 PPYGI_MASLA LINKER POLYPEPTIDE CPCGI MASTIGOCLADUS LAMINOSUS 89-116 PPYG2_ANASP LINKER POLYPEPTIDE CPCG2 ANABAENA SP 88-115 PPYG2_MASLA LINKER POLYPEPTIDE CPCG2 MASTIGOCLADUS LAMINOSUS 89-116 PPYG3_MASLA LINKER POLYPEPTIDE CPCG3 MASTIGOCLADUS LAMINOSUS 91-132 PPYG4_ANASP LINKER POLYPEPTIDE CPCG4 ANABAENA SP 90-131 PPYRI_ANASP 32.1 KD LINKER POLYPEPTIDE ANABAENA SP 35-62 PPYR2_FREDI 27.9 KD LINKER POLYPEPTIDE FREMYELLA DIPLOSIPHON 105-132 PPYR4_FREDI 31.6 KD LINKER POLYPEPTIDE FREMYELLA DIPLOSIPHON 22-66 PPYR5_FREDI 3.5 KD LINKER POLYPEPTIDE FREMYELLA DIPLOSIPHON 106-143 PPYR6_FREDI 30.8 KD LINKER POLYPEPTIDE FREMYELLA DIPLOSIPHON 43-70 113-140 PPYRB_BACSU ASPARTATR CARBAMOYLTRANSFERASE BACILLUS SUBTILIS 9-36 PPYRB_SERMA ASPARTATE CARBAMOYLTRANSPERASE SERRATIA MARCESCENS 70-97 PPYRD_ECOLI DIHYDROOROTATE DEHYDROGENASE ESCHERICHIA COLI 115-142 PPYRD_SALTY DIHYDROOROTATE DEHYDROGENASE SALMONELLA TYPHIMURIUM 115-142 183-210 PPYRG_BACSU CTP SYNTHASE BACILLUS SUBTILIS 275-302 322-349 PPYSI_FREDI PHYCOBILISOME 9.7 KD FREMYELLA DIPLOSIPHON 21-48 LINKER POLYPEPTIDE PQOR_ECOLI QUINONE OXIDOREDUCTASE ESCHERICHIA COLI 180-215 PQUEA_ECOLI QUEUOSINE BIOSYNTHESIS PROTEIN ESCHERICHIA COLI 234-261 QUEA PP34K_CLOPA 34.2 KD PROTEIN IN RUBREDOXIN OPERON CLOSTRIDIUM PASTEURIANUM 23-50 157-232 PRACC_ECOLI RACC PROTEIN ESCHERCHIA COLI 5-32 PRACD_STRTR ASPARTATE RACEMASE STREPTOCOCCUS TIIERMOPHILUS 152-189 PRACX_BACSU PROBABLE AMINO ACID RACEMASE BACILLUS SUBTILIS 132-162 PRAFA_ECOLI ALPHA-GALACTOSIDASE ESCHERICHIA COLI 89-116 PRAFD_ECOLI RAFFINOSE INVERTASE ESCHERICHIA COLI 348-375 PRBSC_ECOLI RIBOSE TRANSPORT SYSTEM COMPONENT ESCHERICHIA COLI 65-99 195-222 PRBSK_ECOLI RIBOKINASE ESCHERICHIA COLI 200-239 PRBTR_KLEAE RIBITOL (RBT) OPERON REPRESSOR KLEBSIELLA AEROGENES 6-47 PRCSA_ECOLI BIOSYNTHESIS ACTIVATION PROTEIN A ESCHERICHIA COLI 170-197 PRCSA_ERWAM BIOSYNTHESIS ACTIVATION PROTEIN A ERWINIA AMYLOVORA 92-119 174-201 PRCSA_ERWST BIOSYNTHESIS ACTIVATION PROTEIN A ERWINIA STEWARTII 174-201 PRCSA_KLEAE BIOSYNTHESIS ACTIVATION PROTEIN A KLEBSIELLA AEROGENES 168-205 PRCSB_ECOLI CAPSULE SYNTHESIS B COMPONENT ESCHERICHIA COLI 14-41 159-186 PREC2_LEGPN RECA PROTEIN LEGIONELLA PHEUMOPHILA 262-310 PRECA_ACHLA RECA PROTEIN ACHOLEPLASMA LAIDLAWII 283-310 PRECA_AGRTU RECA PROTEIN AGROBACTERIUM TUMEFACIENS 3-30 132-159 281-308 PRECA_ANAVA RECA PROTEIN ANABAENA VARIABILIS 322-349 PRECA_AQUPY RECA PROTEIN AQUIFEX PYROPHILUS 63-90 126-153 PRECA_BACFR RECA PROTEIN BACTEROIDES FRAGILIS 108-135 PRECA_BACSU RECE PROTEIN BACILLUS SUBTILIS 267-294 PRECA_BRUAB RECA PROTEIN BRUCELLA ABORTUS 3-30 132-159 280-307 PRECA_BURCE RECA PROTEIN BURKHOLDERIA CEPACIA 75-109 PRECA_ERWCA RECA PROTEIN ERWINIA CAROTOVORA 284-311 PRECA_LACDE RECA PROTEIN LACTOBACILLUS DELBRUECKII 20-47 PRECA_LACHE RECA PROTEIN LACTO BACILLUS HEL VETICUS 20-47 PRECA_LACLA RECA PROTEIN LACTOCOCCUS LACTIS 135-162 232-269 288-315 PRECA_METCL RECA PROTEIN METHYLOMONAS CLARA 266-303 PRECA_METFL RECA PROTEIN METHYLO BACILLUS FLAGELLATUM 276-303 PRECA_MYCPU RECA PROTEIN MYCOPLASMA PULMONIS 30-57 PRECA_MYCTU RECA PROTEIN MYCOBACTERIUM TUBERCULOSIS 749-776 PRECA_NEIGO RECA PROTEIN NEISSERIA GONORRHOEAE 263-310 PRECA_PROMI RECA PROTEIN PROTEUS MIRABILIS 283-310 PRECA_PSEAE RECA PROTEIN PSEUDOMONAS AERUGINOSA 282-309 PRECA_RHILP RECA PROTEIN RHIZOBIUMLEGUMINOSARUM 3-30 131-158 280-307 PRECA_RHILV RECA PROTEIN RHIZOBIUM LEGUMINOSARUM 119-146 268-295 PRECA_RHIME RECA PROTEIN RHIZOBIUM MELILOTI 119-146 268-295 PRECA_RHOSH RECA PROTEIN RHODOBACTER SPHAEROIDES 119-146 PRECA_STRPN RECA PROTEIN STEEPTOCOCCUS PNEUMONIAE 134-161 PRECA_SYNP2 RECA PROTEIN SYNECHOCOCCUS SP 124-151 PRECA_VIBCH RECA PROTEIN VIBRID CHOLERAE 290-317 PRECF_BACSU RECA PROTEIN BACILLUS SUBTILIS 4-31 178-205 PRECF_ECOLI RECF PROTEIN ESCHERICHIA COLI 82-109 147-174 PRECF_PROMI RECF PROTEIN PROTEUS MIRABILIS 86-113 PRECF_PSEPU RECF PROTEIN PSEUDOMONAS PUTIDA 84-111 PRECF_SALTY RECF PROTEIN SALMONELLA TYPHIMURIUM 147-174 PRECF_ECOLI EXONUCLEASE RECI ESCHERICHIA COLI 52-79 PRECN_BACSU RECOMBINATION PROTEIN BACILLUS SUBTILIS 21-48 156-184 192-247 299-336 344-378 PRECQ_ECQLI DNA HELICASE RECQ ESCHERICHIA CDLI 468-495 PRELA_ECOLI GTP PYROPHOSPHOKINASE ESCHER1CHIA COLI 680-707 PREMA_BACSU REPLICATION AND MAINTENANCE PROTEIN BACILLUS SUBTILIS 2-36 81-108 PREMA_STAAU REPLICATION AND MAINTENANCE PROTEIN STAPHYLOCOCCUS AUREUS 2-36 81-108 PREMA_STAEP REPLICATION AND MAINTENANCE PROTEIN STAPHYLOCOCCUS EPIDERMIDIS 2-36 81-108 PREP5_ECOLI REPLICATION PROTEIN REPA ESCHERICHIA COLI 50-77 90-117 PREPA_BACSU REPA PROTEIN BACILLUS SUBTILIS 342-272 PREPA_ECOLI REPA PROTEIN ESCHERICHIA COLI 91-118 228-255 PREPA_NEIGO REPLICATION PROTEIN NEISSERIA GONORRHOEAE 57-84 138-172 PREPB_LACPL REPLICATION PROTEIN REFB LACTOBACILLUS PLANTARUM 184-211 PREPM_STAAU REPLICATION INITIATION PROTEIN STAPHYLOCOCCUS AUREUS 254-284 PREPN_STAAU REPLICATION INITIATION PROTEIN STAPHYLOCOCCUS AUREUS 258-285 PREPR_STRAG REPR PROTEIN STREPTOCOCCUS AGALACTIAE 430-467 PREPS_STRPY REPS PROTEIN STREPTOCOCCUS PYOGENES 423-467 PREPX_STAAU REP PROTEIN STAPHYLOCOCCUS AUREUS 111-150 172-210 PREPY_ECOLI REPLICATION INITIATION PROTEIN ESCHERICHIA COLI 288-315 PREP_CLOPE REPLICATION PROTEIN CLOSTRIDIUM PERPRINGENS 168-195 297-324 343-375 PREP_ECOLI REP HELICASE ESCHERICHIA COLI 119-146 205-243 PREP_LACPL REP PROTEIN LACTO BACILLUS PLANTARUM 119-199 260-287 PRESP_CLOPE RESOL VASE CLOSTRIDIUM PERPRINGENS 68-102 151-185 PRF2_BACSU PROBABLE PEPTIDE CHAIN BACILLUS SUBTILIS 34-68 RELEASE FACTOR 2 PRF2_ECOLI PEPTIDE CHAIN RELEASE FACTOR 2 ESCHERICHIA COLI 86-113 163-204 PRF2_SALTY PEPTIDE CHAIN RELEASE FACTOR 2 SALMONELLA TYPHIMURIUM 86-113 163-204 PRF3_ECOLI PEPTIDE CHAIN RELEASE FACTOR 3 ESCHERICHIA COLI 180-210 443-473 PRFAB_ECOLI 1,6-GALACTOSYLTRANSFERASE ESCHERICHIA COLI 199-226 PRFAG_ECOLI BIOSYNTHESIS PROTEIN RFAG ESCHERICHIA COLI 185-212 PRFAJ_ECOLI 1-2-GLUCOSYLTRANSFERASE ESCHERICHIA COLI 39-66 233-268 PRFAJ_SALTY 1,2-GLUCOSYLTRANSFERASE SALMONELLA TYPHIMURIUM 68-95 145-172 236-263 PRFAK_SALTY 1,2-N-ACETYLGLUCOSAMINETRANSFERASE SALMONELLA TYPHIMUIUUM 335-369 PRFAL_ECOLI 0-ANTIGEN LIGASE ESCHERICHIA COLI 366-393 PRFAL_SALTY 0-ANTIGEN LIGASE SALMONELLA TYPHIMURIUM 326-360 PRFAP_ECOLI BIOSYNTHESIS PROTEIN RFAP ESCHERICHIA COLI 8-35 PRFAS_ECOLI BIOSYNTHESIS PROTEIN RFAS ESCHERICHIA COLI 62-89 184-240 PRFAY_ECOLI BIOSYNTHESIS PROTEIN RFAY ESCHERICHIA COLI 18-45 PRFAZ_ECOLI BIOSYNTHESIS PROTEIN RFAZ ESCHERICHIA COLI 3-30 85-112 PRFBB_SALTY DTDP-GLUCOSE 4,6-DEHYDRATASE SALMONELLA TYPHIMURIUM 320-359 PRFBM_SALTY MANNOSE-I-PHOSPHATE SALMONELLA TYPHIMURIUM 313-361 GUANYLYLTRANSFERAS PRFBS_SALTI PARATOSE SYNTHASE SALMONELLA TYPHI 22-56 205-232 PRFEA_VIBAN PRECURSOR FOR FERRIC ANGUIBACTIN VIBRIO ANGUILLARUM 349-376 PRFH_ECOLI PEPTIDE CHAIN RELEASE FACTOR ESCHERICHIA COLI 83-110 HOMOLOG PRGI2_BACTU PUTATIVE G12 SITE-SPECIFIC BACILLUS THURONGIENSIS 15-68 190-262 310-383 RECOMBINASE PRHAB_ECOLI RHAMNULOKINASE ESCHERICHIA COLI 175-202 PRHAB_SALTY RHAMNULOKINASE SALMONELLA TYPHIMURIUM 175-202 PRHAR_ECOLI L-RHAMNOSE OPERON TRANSACTIVATOR ESCHERICHIA COLI 10-41 PRHAS_ECOLI L-RHAMNOSE OPERON REG ESCHERICHIA COLI 152-179 PROTEIN RHAS PRHIR_RHILV RHIR REGULATORY PROTEIN RHIZOBIUM LEGUMINOSARUM 206-233 PRHLB_ECOLI RNA HELICASE RHLB/MMRA ESCHERICHIA COLI 138-165 PRHO_BORBU TRANS TERM FACTOR RHO BORRELIA BURODORFERI 215-242 327-369 PRHPR_BACSU PROTEASE PROD REG BACILLUS SUBTILIS 82-109 PROTEIN HPR PRHSA_ECOLI RHSA PROTEIN PRECURSOR ESCHERICHIA COLI 667-694 PRHSB_ECOLI RHSB PROTEIN PRECURSOR ESCHERICIIIA COLI 667-694 PRHSC_ECOLI RHSC PROTEIN PRECURSOR ESCHERICHIA COLI 380-414 667-694 1056- 1083 PRHSD_ECOLI RHSD PROTEIN PRECURSOR ESCHERICHIA COLI 671-712 1071- 1098 PRHSE_ECOLI RHSE PROTEIN ESCHERICHIA COLI 345-372 PRIML_ECOLI ACETYLTRANSFERASE ESCHERICHIA COLI 93-127 PRIR2_ECOLI RIBONUCLEOSIDE-DIPHOSPHATE ESCHERICHIA COLI 167-194 REDUCTASE PRISA_PHOLE RIBOFLAVIN SYNTHASE ALPHA CHAIN PHOTOBACTERIUM LEIOGNATHI 2-47 131-158 PRISB_BACSU RIBOFLAVIN SYNTHASE BETA CHAIN BACILLUS SUBTILIS 8-35 PRISB_PHOLE RIBOFLAVIN SYNTHASE BETA CHAIN PHOTOBACTERIUM LEIOGNATHI 14-41 PRL10_STRAT 50S RIBOSOMAL PROTEIN L10 STREPTOMYCES ANTIBIOTICUS 14-72 106-133 PRL12_SYNY3 50S RIBOSOMAL PROTEIN L12 SYNECHOCYSTIS SP 2-34 PRL12_THEMA 50S RIBOSOMAL PROTEIN L12 THERMOTOGA MARITIMA 8-35 56-86 PRL14_BACST 50S RIBOSOMAL PROTEIN L14 BACILLUS STEAROTHERMOPHILUS 18-45 PRL14_MICLU 50S RIBOSOMAL PROTEIN L14 MICROCOCCUS LUTEUS 18-45 PRL14_MYCCA 50S RIBOSOMAL PROTEIN L14 MYCOPLASMA CAPRICOLUM 51-92 PRL15_BACLI 50S RIBOSOMAL PROTEIN L15 BACILLUS LICHENIFORMIS 21-48 PRL15_BACST 50S RIBOSOMAL PROTEIN L15 BACILLUS STEAROTHERMOPHILUS 95-134 PRL15_BACSU 50S RIBOSOMAL PROTEIN L15 BACILLUS SUiSTILIS 95-122 PRL15_ECOLI 50S RIBOSOMAL PROTEIN L15 CHALMYDIA TRACHOMATIS 110-144 PRL18_ECOLI 50S RIBOSOMAL PROTEIN L15 ESCHERICHIA COLI 79-113 PRL18_LACLA 50S RIBOSOMAL PROTEIN L15 LACTOCOCCUS LACTIS 8-35 PRL18_METVA 50S RIBOSOMAL PROTEIN L15 METNANOCOCCUS VANNIIEIlI 68-102 PRL18_MYCCA 50S RIBOSOMAL PROTEIN L18 MYCOPLASNIA CAPRICOLUNI 63-135 PRL18_BACST 50S RIBOSOMAL PROTEIN L18 BACILLUS STEAROTHERNIOPHILUS 31-53 PRL18_CHLTR 50S RIBOSOMAL PROTEIN L18 CHALMIYDIA TRACIIONIATIS 32-86 PRL18_HALMA 50S RIBOSOMAL PROTEIN L18 HALOARCULA MARISNIORTUI 80-107 PRL18_MYCCA 50S RIBOSOMAL PROTEIN L18 MYCOPLASMA CAPRICOIUM 61-88 PRL19_ECOLI 50S RIBOSOMAL PROTEIN L19 ESCHERICHIA COLI 25-52 PRL19_HALMA 50S RIBOSONIAL PROTEIN L19 HALOARCULA MARISNIORTUI 101-128 PRLI9_METVA PROBABLE 50S RIBOSOMAL PROTEIN METHANOCOCCUS VANNIELII 45-72 PRLI_PROVU 50S RIBOSOMAL PROTEIN LI PROTEUS VULGARIS 159-194 PRLI_SULSO 50S RIBOSOMAL PROTEIN LI SULFOLOBUS SOLFATARICUS 5-32 184-211 PRL20_ECOLI 50S RIBOSOMAL PROTEIN L20 ESCHERICHIA COLI 14-41 PRL20_MYCFE 50S RIBOSOMAL PROTEIN L20 MYCOPLASNIA FERMENTANS 14-41 PRL21_BACSU 50S RIBOSOMAL PROTEIN L21 BACILLUS SUIRTILIS 4-38 PPL22_ECOLI 50S RIBOSOMAL PROTEIN L22 ESCHERICHIA COLI 28-55 PRL23_METVA 50S RIBOSOMAL PROTEIN L23 METHANOCOCCUS VANNIELII 30-57 PRL23_MYCCA 50S RIBOSOMAL PROTEIN L23 MYCOPLASMA CAPRICOLUNI 32-59 PRL24_HALMA 50S RIBOSOMAL PROTEIN L24 HALOARCULA MARISNIORTUI 48-73 PRL24_METVA 50S RIBOSOMAL PROTEIN L24 METHANOCOCCUS VANNIELII 61-90 PRL24_MICLU 50S RIBOSOMAL PROTEIN L24 MICROCOCCUS LUTEUS 36-63 PRL29_CHLTR 50S RIBOSOMAL PROTEIN L29 CHLAMYDIA TRACIIOMATIS 39-66 PRL29_ECOLI 50S RIBOSOMAL PROTEIN L29 ESCHERICHIA CDLI 36-63 PPL29_MYCCA 50S RIBOSOMAL PROTEIN L29 MYCOPLASMA CAPRICOLUM 39-85 PPL4_BACST 50S RIBOSOMAL PROTEIN L4 BACILLUS STEAROTHERMOPHILUS 141-168 PPL4_MYCCA 50S RIBOSOMAL PROTEIN L4 MYCOPLASMA CAPRICOLUM 144-198 PPL5_THETH 50S RIDOSOMAL PROTEIN L5 THERMUS AQUATICUS 38-65 PPL6_BACST 50S RIBOSOMAL PROTEIN L6 BACILLUS STEAROTHERMOPHILUS 78-106 PRL6_ECOLI 50S RIBOSOMAL PROTEIN L6 ESCNERICHIA COLI 19-46 PRL6_METVA 50S RIBOSOMAL PROTEIN L6 METHANOCOCCUS VANNIELII 129-159 PRL9_BACST 50S RIBOSOMAL PROTEIN L9 BACILLUS STEAROTHERMOPHILUS 47-77 PRL9_ECOLI 50S RIBOSOMAL PROTEIN L9 ESCHERICHIA COLI 122-149 PRLA0_HALCU ACIDIC RIBOSOMAL PROTEIN HALOBACTERIUM CUTIRUBRUM 138-182 P0 HOMOLOG PRLA0_HALHA ACIDIC RIBOSOMAL PROTEIN HALOBACTERIUM HALOBIUM 138-182 P0 HOMOLOG PRLA0_HALMA ACIDIC RIBOSOMAL PROTEIN HALOARCULA MARISMORTUl 64-91 153-184 P0 HOMOLOG PRLA0_METVA ACIDIC RIBOSOMAL PROTEIN METHANOCOCCUS VANNIELII 194-221 P0 HOMOLOG PRLA0_HALEU RIBOSOMAL PROTEIN ′A′ HALOPHILIC EUBACTERIUM NRCC 41227 59-86 PRLA_HALHA 50S RIBOSOMAL PROTEIN L20 HALOBACTERIUM HALOBIUM 2-29 PRLA_HALMA 50S RIBOSOMAL PROTIEIN L12 HALOBACTERIUM MARISMORTUI 2-29 PRLA_METVA RIBOSOMAL PROTEIN ′A′ METHANOCOCCUS VANNIELII 2-29 PRLA_MICLU 70S RIBOSOMAL PROTEIN MA MICROCOCCUS LUITEUS 55-82 90-117 PRLXI_SALTY 43 KD RELAXATION PROTEIN SALMONELLA TYPHIMURIUM 226-260 PREXI_STAAU RLX PROTEIN STAPHYLOCOCCUS AUREUS 3-30 102-132 177-218 266-300 PRLX2_SALTY 22 KD RELAXATION PROTEIN SALMONELLA TYPHIMURIUM 19-53 PRLX2_STAAU RLX PROTEIN STAPHYLOCOCCUS AUREUS 3-30 102-133 261-295 PRLX3_STAAU RLX PROTEIN STAPHYLOCOCCUS AUREUS 3-30 146-216 PRLX_SULSO 50S RIBOSOMAL PROTEIN LX SULFOLOBUS SOLFATARICUS 32-62 PRNBR_BACAM RIBONUCLEASE PRECURSOR BACILLUS AMYLOLIQUEFACIENS 33-67 129-156 PRNC_ECOLI RIBONUCLEASE III ESCHERICHIA COLI 10-37 117-144 PRNE_ECOLI RIBONUCLEASE E ESCHERICHIA COLI 413-440 628-662 PRNPA_BUCAP RIBONUCLEASE P PROTEIN COMPONENT BUCHNERA APHIDICOLA 85-114 PRNPH_BACSU RIBONUCLEASE PH BACILLUS SUBTILIS 159-186 PRNS_ECOLI REGULATORY PROTEIN RNS ESCHERICHIA COLI 116-160 PRN_BACCI RIBONUCLEASE BACILLUS CIRCULANS 82-109 PRN_BACIN RIBONUCLEASE PRECURSOR BACILLUS INTERMEDIUS 38-72 PRP28_BACTK RNA POLYMERASE SIGMA-28 BACILLUS THURINGIENSIS 73-107 FACTOR PRECURSOR PRP32_CITFR RNA POLYMERASE SIGMA-32 FACTOR CITROBACTER FREUNDII 30-57 PRP35_BACTK RNA POLYMERASE SIOMA-35 BACILLUS THURINGIENSIS 8-35 63-90 FACTOR PRECURSOR PRP54_ALCEU RNA POLYMERASE SIGMA-54 FACTOR ALCALIGENES EUTROPHUS 229-266 PRP54_AZOCA RNA POLYMERASE SIGMA-54 FACTOR AZORHIZOBIUM CAULINODANS 174-208 PRP54_BACSU RNA POLYMERASE SIGMA-54 FACTOR BACILLUS SUBTILIS 16-43 97-124 274-308 396-423 PRPS4_BRAJA RNA POLYMERASE SIGMA-54 FACTOR I BRADYRHIZOBIUM JAPONICUM 97-124 PRP54_KLEPN RHA POLYMERASE SIGMA-54 FACTOR KLEBSIELLA PNEUMONIAE 148-182 PRP54_RHOCA RHA POLYMERASE SIGMA-54 FACTOR RHODOBACTER CAPSULATUS 55-185 PRP55_BRAJA RNA POLYMERASE SIGMA-54 FACTOR 2 BRADYRHIZOBIUM JAPONICUM 145-172 PRP5M_ALCEU PROBABLE SIGMA(54) MODULATION ALCALIGENES EUTROPHUS 21-51 PROTEIN PRP5M_ECOLI PROBABLE SIGMA(54) MODULATION ESCHERICHIA COLI 21-67 PROTEIN PRP5M_SALTY PROBABLE SIGMA(54) MODULATION SALMONELLA TYPHIMURIUM 21-67 PROTEIN PRP70_BUCAP RHA POLYMERASE SIGMA-70 FACTOR BUCIINERA APHIDICOLA 69-96 109-136 173-217 228-255 303-337 PRP70_CHLTR RHA POLYMERASE SIGMA-70 FACTOR CHALMYDIA TRACHOMATIS 5-32 PRP70_ECOLI RNA POLYMERASE SIGMA-70 FACTOR ESCHERICHIA COLI 327-361 PRP70_PSEAE RNA POLYMERASE SIGMA-70 FACTOR PSEUDOMONAS AERUGINOSA 334-368 PRP70_RICPR RHA POLYMERASE SIGMA-70 FACTOR RICKETTSIA PROWAZEKII 244-321 348-382 PRP80_MYXXA RNA POLYMERASE SIGMA-80 FACTOR MYXOCOCCUS XANTHUS 208-235 318-347 359-386 PRPCF_SYNPY BILIN BIOSYNTHESIS PROTEIN RPCF SYNECHOCOCCUS SP 180-207 PRPOA_BACSU DNA-DIRECTED RNA POLYMERASE BACILLUS SUBTILIS 55-107 ALPHA CHAIN PRPOA_HALHA DNA-DIRECTED RNA POLYMERASE HALOBACTERIUM HALOBIUM 863-904 SUBUNIT A PRPOA_HALMO A-DIRECTED RHA POLYMERASE HALOCOCCUS MORRHUAE 229-270 SUBUNIT A PRPOA_METFH DNA-DIRECTED RNA POLYMERASE METMANOBACTERIUM THERMOAUTOTROFHIC 218-245 486-513 642-669 SUBUNIT A PRPOA_SULAC DNA-DIRECTED RNA POLYMERASE METHANOBACTERIUM THERMOAUTOTROPHIC 58-85 272-302 327-354 SUBUNIT C PRPOA_METTH DNA-DIRECTED RNA POLYMERASE METHANOBACTERIUM 218-245 486-513 642-669 SUBUNIT A THERMOAUTOTROPHICU PRPOA_SULAC DNA-DIRECTED RNA POLYMERASE SULFOLOBUS ACIDOCALDARIUS 222-256 500-527 693-720 SUBUNIT A PRPOA_THECE DNA-DIRECTED RNA POLYMERASE THERMOCOCCUS CELER 228-262 SUBUNIT A′ PRPOB_ECOLI DNA-DIRECTED RNA POLYMERASE ESCHERICHIA COLI 599-626 1011- BETA CHAIN 1111 PRPOB_MYCLE DNA-DIRECTED RNA POLYMERASE MYCOBACTERIUM LEPRAE 723-760 1084- BETA CHAIN 1111 PRPOB_SALTY A-DIRECTED RNA POLYMERASE SALMONELLA TYPHIMURIUM 599-626 958-985 1011- BETA CHAIN 1038 PRPOB_SULAC A-DIRECTED RNA POLYMERASE SULFOLOBUS ACIDOCALDARIUS 160-187 255-282 534-561 827-861 SUBUNIT B PRPOB_THEMA A-DIRECTED RNA POLYMERASE THERMOTOGA MARITIMA 350-377 BETA CHAIN PRPOC_ANASP DNA-DIRECTED RNA POLYMERASE ANABAENA SP 152-194 GAMMA CHAIN PRPOC_ECOLI DNA-DIRECTED RNA POLYMERASE ESCHERICHIA COLI 786-813 948-994 1223- BETA′ CHAIN 1257 PRPOC_HALHA DNA-DIRECTED RNA POLYMERASE HALOBACTERIUM HALOBIUM 175-202 SUBUNIT C PRPOC_HALMO DNA-DIRECTED RNA POLYMERASE HALOCOCCUS MORRHUAE 27-54 117-144 207-234 SUBUNIT C PRPOC_METTH DNA-DIRECTED RNA POLYMERASE METHANOBACTERIUM 58-85 272-302 327-354 SUBUNIT C THERMOAUTOTROPHICU PRPOC_MYCLE A-DIRECTED RNA POLYMERASE MYCOBACTERIUM LEPRAE 273-300 860-887 911-938 1131- BETA′ CHAIN 1158 PRPOC_NOSCO DNA-DIRECTED RNA POLYMERASE NOSTOC COMMUNE 150-192 GAMMA CHAIN PRPOC_SULAC DNA-DIRECTED RNA POLYMERASE SULFOLOBUS ACIDOCALDARIUS 36-63 172-214 224-251 SUBUNIT C PRPOC_THECE DNA-DIRECTED RHA POLYMERASE THERMOCOCCUS CELER 21-58 SUBUNIT A″ PRPOD_NOSCO DNA-DIRECTED RHA POLYMERASE NOSTOC COMMUNE 72-116 402-449 539-566 DELTA CHAIN PRPOE_ECOLI RNA POLYMERASE SIGMA-E FACTOR ESCHERICHIA COLI 5-39 PRPOS_ECOLI RNA POLYMERASE SIGMA FACTOR KATF ESCHERICHIA COLI 281-308 PRPOU_HALHA DNA-DIRECTED RHA POLYMERASE HALOBACTERIUM HALOBIUM 91-118 SUBUNIT B′ PRPSA_AGRTU RNA POLYMERASE SIGMA-A FACTOR AGROBACTERIUM TUMEFACIENS 310-347 397-427 PRPSA_ANASP RNA POLYMERASE SIGMA-A FACTOR ANABAENA SP 71-105 PRPSA_CLOAB RNA POLYMERASE SIGMA-A FACTOR CLOSTRIDIUM ACETOIIUTYLICUM 2-29 PRPSA_STRAU RNA POLYMERASE SIGMA FACTOR RPOD STREPTOMYCES AUREOFACIENS 278-305 PRPSB_ANASP RNA POLYMERASE SIGMA-B FACTOR ANABAENA SP 4-31 PRPSB_BACSU RNA POLYMERASE SIGMA-B FACTOR BACILLUS SUBTILIS 5-35 169-196 200-230 PRPSB_MYXXA RNA POLYMERASE SIGMA-B FACTOR MYXOCOCCUS XANTHUS 47-74 PRPSB_STIAU RNA POLYMERASE SIGMA-B FACTOR STIGMATELLA AURANTIACA 96-123 PRPSC_ANASP RNA POLYMERASE SIGMA-C FACTOR ANABAENA SP 58-85 PRPSD_BACSU RNA POLYMERASE SIGMA-D FACTOR BACILLUS SUBTILIS 192-249 PRPSE_BACSU RNA POLYMERASE SIGMA-E FACTOR BACILLUS SUBTILIS 63-90 PRECURSOR PRPSE_CLOAB RNA POLYMERASE SIGMA-E FACTOR CLOSTRIDIUM ACETOBUTYLICUM 14-41 116-160 PRPSF_BACLI RNA POLYMERASE SIGMA-F FACTOR BACILLUS LICHENIFORMIS 4-31 191-248 PRPSF_BACME RNA POLYMERASE SIGMA-F FACTOR BACILLUS NIEGATERIUM 191-225 PRPSF_BACSU RNA POLYMERASE SIGMA-F FACTOR BACILLUS SUBTILIS 4-31 191-248 PRPSH_BACLI RNA POLYMERASE SIGMA-H FACTOR BACILLUS LICHENIFORNIIS 191-218 PRPSH_BACSU RNA POLYMERASE SIGMA-H FACTOR BACILLUS SUBTILIS 186-213 PRPSK_BACSU RNA POLYMERASE SIGMA-K FACTOR BACILLUS SUBTILIS 75-109 189-216 PRPSP_STAAU RNA POLYMERASE SIGMA FACTOR PLAC STAPHYLOCOCCUS AUREUS 19-46 PRPSW_STRCO RNA POLYMERASE SIGMA FACTOR WHIG STREPTOMYCES COELICOLOR 232-273 PRPSX_BACTK POSSIBLE RNA POLYMERASE SIGMA-G BACILLUS THURINGIENSIS 33-60 FACTOR PRS10_ECOLI 30S RIBOSOMAL PROTEIN S10 ESCHERICHIA COLI 3-30 PRS11_BACSU 30S RIBOSOMAL PROTEIN S11 BACILLUS SUBTILIS 8-42 PRS13_BACSU 30S RIBOSOMAL PROTEIN S13 BACILLUS SUBTILIS 44-85 PRS17_METVA 30S RIBOSOMAL PROTEIN S17 METHANOCOCCUS VANNIELII 34-73 PRS1_ECOLI 30S RIBOSOMAL PROTEIN S1 ESCHERICHIA COLI 99-126 144-171 PPS1_PROSP 30S RIBOSOMAL PROTEIN S1 PROVIDENCIA SP 39-66 265-292 349-376 PRS1_RHIME 30S RIBOSOMAL PROTEIN S1 RHIZOBIUM MELILOTI 91-125 172-217 PRS21_BACST 30S RIBOSOMAL PROTEIN S21 BACILLUS STEAROTHERMOPHILUS 1-28 PRS2_SPICI 30S RIBOSOMAL PROTEIN S2 SPIROPLASMA CITRI 91-125 PRS3_ACHLA 30S RIBOSOMAL PROTEIN S3 ACHOLEPLASMA LAIDLAWII 83-110 PRS3_MYCCA 30S RIBOSOMAL PROTEIN S3 MYCOPLASMA CAPRICOLUM 77-106 136-163 PRS4_ECOLI 30S RIBOSOMAL PROTEIN S4 ESCHERICHIA COLI 50-77 PRS5_HALMA 30S RIBOSOMAL PROTEIN S5 HALOARCULA MARISMORTUI 160-187 PRS5_MYCCA 30S RIBOSOMAL PROTEIN S5 MYCOPLASMA CAPRICOLUM 35-62 182-216 PRS6_THETH 30S RIBOSOMAL PROTEIN S6 THERMUS AQUATICUS 16-43 PRS7_METVA 30S RIBOSOMAL PROTEIN S7 METHANOCOCCUS VANNIELII 69-96 PRS7_MYCLE 30S RIBOSOMAL PROTEIN S7 MYCOBACTERIUM LEPRAE 22-49 PRS8_MICLU 30S RIBOSOMAL PROTEIN S8 MICROCOCCUS LUTEUS 103-130 PRS8_MYCCA 30S RIBOSOMAL PROTEIN S8 MYCOPLASMA CAPRICOLUM 41-78 PRSGA_ECOLI FERRITIN LIKE PROTEIN ESCHERICHIA COLI 80-107 PRT67_ECOLI RNA-DIRECTED DNA POLYMERASE ESCHERICHIA COLI 225-268 PSACB_BACAM LEVANSUCRASE PRECURSOR BACILLUS AMYLOLIQUEFACIENS 175-202 254-281 PSACB_BACSU LEVANSUCRASE PRECURSOR BACILLUS SUBTILIS 175-202 254-288 PSACB_STRMU LEVANSUCRASE PRECURSOR STREPTOCOCCUS MUTANS 31-65 155-189 314-369 PSACQ_BACLI SACQ REGULATORY FACTOR BACILLUS LICHENIFORMIS 2-46 PSACT_BACSU SACPA OPERON ANTITERMINATOR BACILLUS SUBTILIS 102-129 189-216 PSAGP_STRPY STREPTOCOCCAL ACID GLYCOPROTEIN STREPTOCOCCUS PYOGENES 294-331 362-389 PSAOX_BACSN SARCOSINE OXIDASE BACILLUS SP 350-377 PSAS2_CLOBI SPORE PROTEIN CLOSTRIDIUM BIFERMENTANS 17-47 PSASO_BACCE SPORE PROTEIN GAMMA-TYPE BACILLUS CEREUS 31-58 PSASG_BACST SPORE PROTEIN GAMMA-TYPE I BACILLUS STEAROTHERMOPHILUS 37-64 PSBCC_ECOLI EXONUCLEASE SBCC ESCHERICHIA COLI 218-260 337-364 535-585 622-656 778-812 821-865 915-942 PSBCD_ECOLI EXONUCLEASE SBCD ESCHERICHIA COLI 137-164 334-397 PSBM_ECOLI SBM PROTEIN ESCHERICHIA COLI 5-32 436-470 553-580 PSBP_BACSU SBP PROTEIN BACILLUS SUBTILIS 28-55 PSCPA_STRPY C5A PEPTIDASE PRECURSOR STREPTOCOCCUS PYOGENES 126-160 784-811 831-880 PSCRB_KLEPN SUCROSE-6-PHOSPHATE HYDROLASE KLEBSIELLA PNEUMONIAE 174-201 PSCRB_LACLA SUCROSE-6-PHOSPHATE HYOROLASE LACTOCOCCUS LACTIS 182-217 354-385 395-422 PSCRB_STRMU SUCROSE-6-PHOSPHATE HYDROLASE STREPTOCOCCUS MUTANS 333-362 PSCRK_SALTH FRUCTOKINASE SALMONELLA THOMPSON 97-124 PSELO_ECOLI PROTEIN-EXPORT MEMBRANE ESCHERICHIA COLI 46-73 378-412 PROTEIN SECO PSECF_ECOLI PROTEIN-EXPORT MEMBRANE ESCHERICHIA COLI 174-201 PROTEIN SECF PSECY_ECOLI PREPROTEIN TRANSLOCASE SECY ESCHERICHIA COLI 101-128 SUBUNIT PSECY_LACLA PREPROTEIN TRANSLOCASE SECY LACTOCOCCUS LACTIS 403-430 SUBUNIT PSECY_METVA PREPROTEIN TRANSLOCASE SECY METHANOCOCCUS VANNIELII 131-161 396-423 SUBUNIT PSECY_STACA PREPROTEIN TRANSLOCASE SECY STAPHYLOCOCCUS CARNOSUS 149-191 SUBUNIT PSEFC_SALEN SEFC PROTEIN PRECURSOR SALMONELLA ENTERITIDIS 137-164 475-533 PSERA_BACSU D-3-PHOSPHOGLYCERATE BACILLUS SUBTILIS 16-43 347-374 DEHYDROGENASE PSPAA_ECOLI 5-FIMBRIAL PROTEIN SUBUNIT ESCHERICHIA COLI 11-38 PRECURSOR PSFSA_ECOLI SUGAR FERMENTATION STIMULATION ESCHERICHIA COLI 81-115 PROTEIN PSFUA_SERMA IRON-TRANSPORT SFUA PROTEIN SERRATIA NIARCESCENS 34-61 PRECURSOR PSHU1_ECOLI SHUFFLON PROTEIN A ESCHERICHIA COLI 224-262 PSHU2_ECOLI SHUFFLON PROTEIN A′ ESCHERICHIA COLI 224-262 PSHU3_ECOLI SHUFFLON PROTEIN B ESCIIERICHIA COLI 224-262 PSHU4_ECOLI SHUFFLON PROTEIN B′ ESCHERICHIA COLI 224-262 PSHU5_ECOLI SHUFFLON PROTEIN C ESCHERICHIA COLI 224-262 402-429 PSHU6_ECOLI SHUFFLON PROTEIN C′ ESCHERICHIA COLI 224-262 PSHU7_ECOLI SHUFFLON PROTEIN D′ ESCHERICHIA COLI 224-262 PSINR_BACLI SINR PROTEIN BACILLUS LICHENIFORMIS 9-36 43-80 PSINR_BACSU SINR PROTEIN BACILLUS SUBTILIS 9-36 43-70 PSLAP_ACEKI CELL SURFACE PROTEIN PRECURSOR ACETOGENIUNI KIVUI 237-264 282-309 313-453 458-489 517-544 563-593 641-685 726-753 PSLPA_ECOLI PROPHAGE CP4-57 INTEGRASE ESCHERICHIA COLI 93-136 PSMF_ECOLI SME PROTEIN ESCHERICHIA COLI 24-51 PSMPB_ECOLI SMALL PROTEIN B ESCHERICHIA COLI 27-61 90-117 PSMP_ECOLI SNIP PROTEIN PRECURSOR ESCHERICHIA COLI 71-98 PSMTB_SYNP7 TRANSCRIPTIONAL REPRESSOR SMTB SYNECHOCOCCUS SP 62-96 PSODF_COXBU SUPEROXIDE DISMUTASE COXIELLA BURNETII 116-143 PSODF_ECOLI SUPEROXIDE DISMUTASE ESCHERICHIA COLI 115-142 PSODF_METTH SUPEROXIDE DISMUTASE METHANOBACTERIUM THERMOAUTOTROPHIC 25-52 PSODF_PHOLE SUPEROXIDE DISMUTASE PHOTOBACTERIUM LEIOGNATHI 22-63 PSODM_PROFR SUPEROXIDE DISMUTASE PROPIONIBACTERIUM FREUDENREICHII 164-191 PSOHB_ECOLI SOHB PROTEIN PRECURSOR ESCHERICHIA COLI 7-48 70-97 273-300 PSOPB_ECOLI SOPO PROTEIN ESCHERICHIA COLI 252-279 PSOXA_ECOLI SOXR PROTEIN ESCHERICHIA COLI 16-63 PSPOJ_BACSU STAGE 0 SPORULATION PROTEIN J BACILLUS SUBTILIS 131-158 PSP2A_BACME STAGE II SPORULATION PROTEIN AA BACILLUS MEGATERIUM 19-53 PSP2A_BACSU STAGE II SPORULATION PROTEIN AA BACILLUS SUBTILIS 21-55 PSP2B_BACLI STAGE II SPORULATION PROTEIN AB BACILLUS LICHENIPORMIS 42-69 PSP2B_BACME STAGE II SPORULATION PROTEIN AB BACILLUS MEGATERIUM 36-73 PSP2D_BACSU STAGE II SPORULATION PROTEIN D BACILLUS SUBTILIS 134-161 PSP2G_BACTX POSSIBLE ASPARTYL PROTEASE BACILLUS THURINGIENSIS 4-36 117-144 PSP2J_BACSU STAGE II SPORULATION PROTEIN J BACILLUS SUBTILIS 14-44 463-500 PSP3D_BACSU STAGE III SPORULATION PROTEIN D BACILLUS SUBTILIS 9-36 52-86 PSP3J_BACSU STAGE III SPORULATION PROTEIN J PRECURSOR BACILLUS SUBTILIS 44-75 PSP4A_BACSU STAGE IV SPORULATION PROTEIN A BACILLUS SUBTILIS 139-180 PSP4B_BACSU STAGE IV SPORULATION PROTEIN B BACILLUS SUBTILIS 39-66 PSP4G_BACSU STAGE IV SPORULATION PROTEIN FB BACILLUS SUBTILIS 251-278 PSP5A_BACSU STAGE V SPORULATION PROTEIN AF BACILLUS SUBTILIS 9-36 PSPAA_STRDO ANTIGEN I STREPTOCOCCUS DOWNEI 184-218 PSPAB_BACSU SUBTILIN BIOSYNTHESIS 117 KD PROTE BACILLUS SUBTILIS 181-208 PSPAC_BACSU SUBTILIN BIOSYNTHESIS PROTEIN SPAC BACILLUS SUBTILIS 311-338 PSPAK_BACSU SENSOR PROTEIN SPAK BACILLUS SUBTILIS 80-107 224-251 290-324 PSPAP_STRMU CELL SURFACE ANTIGEN I/II PRECURSOR STREPTOCOCCUS MUTANS 122-276 281-276 538-565 576-630 1071- 1155- 1377- 1098 1182 1430 PSPAR_BACSU REGULATORY PROTEIN BACILLUS SUBTILIS 4-31 172-199 PSPAT_BACSU SUBTILIN TRANSPORT PROTEIN SPAT BACTILLUS SUBTILIS 55-82 226-267 SPSEC_STRPY EXOTOXIN TYPE C PRECURSOR STREPTOCOCCUS PYOGENES 12-39 PSPIR_SPICI SPIRALIN SPIROPLASMA CITRI 82-109 155-182 PSPER_SPIME SPIRALEN SPIROPLASMA MELLIFERUM 195-222 PSPOT_ECOLI GUAN-3′,5′-BES(DIPHOS) ESCHERICHIA COLI 637-664 3′-PYROPHOSPHOHYDROLA PSPPA_ECOLI PROTEASE IV ESCHERICHEA COLI 278-305 PSQHC_ZYMMO SQUALENE-HOPENE CYCLASE ZYMOMONAS MOBILES 590-617 PSRFA_BACSU SURFACTIN SYNTHETASE SUBUNIT A BACILLUS SUBTILES 159-186 244-271 PSRP5_ECOLI SIGNAL RECOGNITION PARTICLE ESCHERICHIA COLI 301-328 PROTEIN PSRPS_MYCMY SIGNAL RECOGNITION PARTICLE MYCOPLASMA MYCOIDES 21-65 107-141 394-428 PROTEIN PSSAI_PASHA SEROTYPE-SPECIFIC ANTIGEN PASTEURELLA HABMOLYTECA 151-178 358-385 465-518 529-570 860-904 I PRECURSOR PSSAB_STRPA ADHESIN B PRECURSOR STREPTOCOCCUS PARASANGUIS 32-59 PSSAB_STRSA ADHESIN B PRECURSOR STREPTOCOCCUS SANGUIS 21-59 101-128 PSSB_ECOLI SINGLE-STRAND BINDING PROTEIN ESCHERICHIA COLI 68-95 PSSB_PROMI SINGLE-STRAND BINDING PROTEIN PROTEUS MIRABILIS 63-104 PSSB_SERMA SINGLE-STRAND BINDING PROTEIN SERRATIA MARCESCENS 63-104 PSSP5_5STRSA AGGLUTININ RECEPTOR PRECURSOR STREPTOCOCCUS SANGUIS 131-173 178-287 295-483 565-592 676-710 1081- 1131 PSTAV_STRAV STREPTAVIDIN PRECURSOR STREPTOMYCES AVIDINII 125-152 PSTA_ECOLI STREPTOTHRICIN ACETYLTRANSFERASE ESCHERICHIA COLI 66-93 PSTC1_STAAU STAPHYLOCOAGULASE PRECURSOR STAPHYLOCOCCUS AUREUS 90-119 172-199 280-311 PSTC2_STAAU STAPHYLOCOAGULASE PRECURSOR STAPHYLOCOCCUS AUREUS 90-117 264-291 PSTC_CLOBE L-TRANSD TRANSC CONTROL PROTEIN CLOSTRIDIUM BEUERINCKII 47-74 PSTPA_ECOLI STPA PROTEIN ESCHERICHIA COLI 36-63 PSTRI_STRGR INOSAMINE-PHOSPHATE STREPTOMYCES GRISEUS 183-210 AMIDINOTRANSFERASE 1 PSTRP_STREQ STREPTOKINASE C PRECURSOR STREPTOCOCCUS EQUISIMILIS 209-236 281-308 PSTRP_STRPY STREPTOKINASE A PRECURSOR STREPTOCOCCUS PYOGENES 209-236 PSTRP_STRSP STREPTOKINASE G PRECURSOR STREPTOCOCCUS SP 209-236 281-308 PSUBE_BACSU MINOR EXTRACELLULAR PROTEASE BACILLUS SUBTILIS 435-462 522-563 605-639 EPR PREC PSUBF_BACSU BACILLOPEPTIDASE F PRECURSOR BACILLUS SUBTILIS 40-67 89-116 121-148 554-597 PSUBI_SALTY SULFATE-BINDING PROTEIN SALMONELLA TYPHIMURIUM 37-74 PSUBI_SYNP7 SULFATE-BINDING PROTEIN PRECURSOR SYNECHOCOCCUS SP 63-94 PSUBI_SYNY3 SULFATE-BINDING PROTEIN PRECURSOR SYNECHOCYSTIS SP 64-91 PSUBT_BACLI SUBTILISIN CARLSBERG PRECURSOR BACILLUS LICHENIFORMIS 191-222 PSUBT_BACMS SUBTILISIN BACILLUS MESENTERICUS 91-118 PSUBT_BACS9 SUBTILISIN PRECURSOR BACILLUS SP 36-63 250-277 PSUBT_BACSA SUBTILISIN AMYLOSACCHARITICUS BACILLUS SUBTILIS 197-224 PRECURSOR PSUBT_BACSD SUBTILISIN BACILLUS SUBTILIS 86-117 PSUBT_BACST SUBTILISIN J PRECURSOR BACILLUS STEAROTHERMOPHILUS 197-224 PSUBT_BACSU SUBTILISIN E PRECURSOR BACILLUS SUBTILIS 197-224 PSUBV_BACSU MINOR EXTRACELLULAR PROTEASE BACILLUS SUBTILIS 55-108 613-654 741-768 VPR PRECUR PSUCC_ECOLI SUCCINYL-COA SYNTHETASE BETA ESCHERICHIA COLE 62-89 PSUCP_AGRV1 SUCROSE PHOSPHORYLASE AGROBACTERIUM VITIS 449-476 PSULA_ENTAE CELL DIVISION INHIBITOR ENTEROBACTER AEROGENES 112-139 PSYA_ECOLI ALANYL-TRNA SYNTHETASE ESCHERICHIA COLE 257-287 725-752 790-821 PSYD_ECOLI ASPARTYL-TRNA SYNTHETASE ESCHERICHIA COLI 330-357 PSYE_BACST GLUTAMYL-TRNA SYNTHETASE BACILLUS STEAROTHERMOPHILUS 49-76 PSYE_BAOBU GLUTAMYL-TRNA SYNTHETASE BACILLUS SUBTILIS 49-76 351-386 PSYE_THETH GLUTAMYL-TRNA SYNTHETASE THERMUS AQUATECUS 405-432 PSYFA_BACSU PHENYLALANYL-TRNA SYNTHETASE BACILLUS SUBTILIS 7-34 A CHAIN PSYFB_BACSU PHENYLALANYL-TRNA SYNTHETASE BACILLUS SUBTELIS 340-367 407-441 BETA CHAIN PSYFB_ECOLI PHENYLALANYL-TRNA SYNTHETASE ESCHERICHIA COLI 546-573 607-634 744-771 BETA CHAIN PSYGB_ECOLI GLYCYL-TRNA SYNTHETASE ESCHERICHIA COLI 354-381 487-514 BETA CHAIN PSYH_STREQ HISTIDYL-TRNA SYNTHETASE STREPTOCOCCUS EQUISIMILIS 376-403 PSYI_METTH ISOLEUCYL-TRNA SYNTHETASE METHANOBACTERIUM THERMOAUTOTROPHIC 1010- 1037 PSYK1_ECOLI LYSYL-TRNA SYNTHETASE ESCHERICHIA COLI 283-310 PSYK2_ECOLI LYSYL-TRNA SYNTHETASE, HEAT ESCHERICHIA COLI 45-72 283-310 INDUCIBLE PSYL_ECOLI LEUCYL-TRNA SYNTHETASE ESCHERICHIA COLI 220-247 PSYM_BACST METHIONYL-TRNA SYNTHETASE BACILLUS 69-99 STEAROTHERMOPHILUS PSYM_ECOLI METHIONYL-TRNA SYNTHETASE ESCHERICHIA COLI 87-124 PSYP_ECOLI PROLYL-TRNA SYNTHETASE ESCHERICHIA COLI 541-568 PSYQ_ECOLI GLUTAMINYL-TRNA SYNTHETASE ESCHERICHIA COLI 394-421 PSYRD_PSESY SYRD PROTEIN PSELIDOMONAS SYRINGAE 449-483 PSYR_ECOLI ARGINYL-TRNA SYNTHETASE ESCHERICHIA COLI 540-574 PSYTI_BACSU THREONYL-TRNA SYNTHETASE BACILLUS SUBTILIS 401-428 605-639 PSYV_BACST VALYL-TRNA SYNTHETASE BACILLUS STEAROTHERMOPHILUS 603-630 809-843 PSYV_ECOLI VALYL-TRNA SYNTHETASE ESCHERICHIA COLI 300-327 882-912 924-951 PSYW_BACST TRYPTOPHANYL-TRNA SYNTHETASE BACILLUS STEAROTHERMOPHILUS 204-231 239-266 PSYY1_BACSU TYROSYL-TRNA SYNTHETASE 1 BACILLUS SUBTILIS 81-115 375-409 PSYY2_BACSU TYROSYL-TRNA SYNTHETASE 2 BACILLUS SUBTILIS 69-96 PSYY_BACCA TYROSYL-TRNA SYNTHETASE BACILLUS CALDOTENAX 295-322 332-416 PSYY_BACST TYROSYL-TRNA SYNTHETASE BACILLUS STEAROTIERMOPHILUS 295-322 372-416 PTIMI_ECOLI ENZYME ECOR 124/3 PROTEIN ESCHEIHCHIA COLI 126-167 405-432 485-512 PTIRI_ECOLI ENZYME ECOR 124/3 PROTEIN ESCHEHICHIA COLI 30-57 624-651 702-736 768-795 843-870 966- 1000 PTIR_ECOLI ENZYME ECOK IR PROTEIN ESCHERICHIA COLI 158-263 PTISI_ECOLI ENZYME ECOR 124/3 SPECIFICITY PROTEIN ESCHERICHIA COLI 154-181 PTISA_ECOLI ENZYME ECOA I SPECIFICITY PROTEIN ESCHERICHIA COLI 279-306 PTISB_ECOLI ENZYME ECOB I SPECIFICITY PROTEIN ESCHERICHIA COLI 278-312 PTISD_ECOLI ENZYME ECOD I SPECIFICITY PROTEIN ESCHERICH1A COLI 249-283 PTISE_ECOLI ENZYME ECOE I SPECIFICITY PROTEIN ESCHERICHIA COLI 279-306 PTIS_SALDO ENZYME SPECIFICITY PROTEIN SALMONELLA POTSDAM 396-423 PTIS_SALTY ENZYME SPECIFICITY PROTEIN SALMONELLA TYPHIMURIUM 194-221 276-304 402-429 PT257_ECOLI TYPE II RESTRICTION ENZYME EC0571 ESCHERICHIA COLI 138-196 265-295 406-440 639-682 687-728 926-954 PT2AI_ACICA TYPE II RESTRICTION ENZYME ACCI ACINETOBACTER CALCOACETICUS 49-76 PT2BF_BACSU TYPE II RESTRICTION ENZYME BSUFI BACILLUS SUBTILIS 3-43 135-223 236-280 PT2BR_BACSU TYPE II RESTRICTION ENZYME BSURI BACILLUS SUBTILIS 3-45 338-384 401-430 532-559 PT2CI_CITFR TYPE II RESTRICTION ENZYME CFRBI CITROBACTER FREUNOII 35-62 PT2CI_HERAU TYPE II RESTRICTION ENZYME HGICII HERPETOSIPHON AURANTIACUS 176-215 PT2C2_HERAU TYPE II RESTRICTION ENZYME HGICII HERPETOSIPHON AURANTIACUS 243-273 PT2DI_DESON TYPE II RESTRICTION ENZYME DDEI DESULFOVIBRIO DESULFURICANS 85-122 PT2DI_STRPN TYPE II RESTRICTION ENZYME DPNI STREPTOCOCCUS PNEUMONIAE 213-240 PT2EI_ECOLI TYPE II RESTRICTION ENZYME ECORI ESCHERICHIA COLI 2-29 PT2E2_ECOLI TYPE II RESTRICTION ENZYME ECORII ESCIHERICHIA COLI 333-360 PT2E5_ECOLI TYPE II RESTRICTION ENZYME ECORV ESCIHERICHIA COLI 128-155 214-241 PT2FI_FLAOK TYPE II RESTRICTION ENZYME FOKI FLAVOBACTERIUM OKEANOKOITES 302-336 PT2H1_HAEIN TYPE II RESTRICTION ENZYME HINFI HAEMOPHILUS INFLUENZAE 6-38 69-96 PT2H1_HAEPA TYPE II RESTRICTION ENZYME HPAI HAEMOPHILUS PARAINFLUENZAE 77-125 PT2H2_HAEHA TYPE II RESTRICTION ENZYME HHAII HAEMOPHILUS HAEMOLYTICUS 23-50 PT2H2_HAEIN TYPE II RESTRICTION ENZYME HINCII HAEMOPHILUS INFLUENZAE 97-138 PT2KI_KLEPN TYPE II RESTRICTION ENZYME KPNI KLEBSIELLA PNEUMONIAE 18-45 178-205 PT2MI_MORBO TYPE II RESTRICTION ENZYME MBOI MORAXELLA BOVIS 15-61 187-215 225-252 PT2M2_MORBO TYPE II RESTRICTION ENZYME MEOII MORAXELLA BOVIS 3-30 158-185 337-364 PT2MZ_METIF TYPE II RESTRICTION ENZYME MTHZI METHANOBACTERIUM THERMOFORMICICUM 105-151 PT2NG_NEIGO TYPE II RESTRICTION ENZYME NGOPII NEISSERIA GONORRHOEAE 117-144 231-258 PT2S1_STRSA TYPE II RESTRICTION ENZYME STSI STREPTOCOCCUS SANGUIS 5-32 41-68 395-446 PT2S2_SHISO TYPE II RESTRICTION ENZYME SSOII SHIGELLA SONNEI 206-243 258-288 PT2S3_STAAU TYPE II RESTRICTION ENZYME SAU3AI STAPHYLOCOCCUS AUREUS 70-102 PT2SI_SALIN TYPE II RESTRICTION ENZYME SINI SALMONELLA INFANTIS 144-181 PT2SM_SERMA TYPE II RESTRICTION ENZYME SMAI SERRATIA MARCESCENS 61-88 PT2TA_ThEAQ TYPE II RESTRICTION ENZYME TAQI THERMUS AQUATICUS 147-181 203-237 PT3MO_ECOLI SYSTEM ECOPIS ENZYME MOD ESCHERICHIA COLI 37-71 75-102 236-296 378-405 PT3RE_BACCE SYSTEM ENZYME RES BACILLUS CEREUS 62-89 256-283 PTA47_TREPA 47 KD MEMBRANE ANTIGEN PRECURSOR TREPONEMA PALLIDUM 26-53 PTA53_TREDE 53 KD MEMBRANE ANTIGEN A PRECURSOR TREPONEMA DENTICOLA 99-126 298-329 PTACY_BACAL ALVEOLYSIN PRECURSOR BACILLUS ALVEI 272-302 374-401 PTACY_CLOPE PERFRINGOLYSIN O PRECURSOR CLOSTRIDIUM PERFRINGENS 270-311 372-434 PTACY_LISIV IVANOLYSIN PRECURSOR LISTERIA IVANOVII 93-120 167-195 396-423 PTACY_LISMO LISTERIOLYSIN O PRECURSOR LISTERIA MONOCYTOGENES 98-125 168-196 295-329 397-424 PTACY_LISSE SEELIGERIOLYSIN PRECURSOR LISTERIA SEELIGERI 99-126 296-323 349-376 398-463 PTACY_STRPN PNEUMOLYSIN STREPTOCOCCUS PNEUMONIAE 234-272 PTACY_STRPY STREPTOLYSIN O PRECURSOR STREPTOCOCCUS PYOGENES 86-133 355-382 440-470 PTAGB_BACSU TECHOIC ACID BIOSYN PROTEIN B PREC BACILLUS SUBTILIS 42-69 PTAGC_BACSU TECHOIC ACID BIOSYNTHESIS PROTEIN C BACILLUS SUBTILIS 348-375 PTAGE_BACSU TECHOIC ACID BIOSYNTHESIS PROTEIN B BACILLUS SUBTILIS 59-93 144-181 185-243 565-592 600-627 PTAGF_BACSU TECHOIC ACID BIOSYNTHESIS PROTEIN F BACILLUS SUBTILIS 182-209 PTBPI_NEIGO TRANSFERRINBINDING PROTEIN NEISSERIA GONORRHOEAE 39-73 137-164 398-425 810-841 I PRECURSOR PTBUD_PSEPI PHENOL 2-MONOOXYGENASE PSEUDOMONAS PICKETTII 38-65 227-254 375-402 PTCDT_SALTY TRANSCRIPTIONAL REGULATORY SALMONELLA TYPHIMURIUM 105-132 PROTEIN TCDT PTCPC_VIBCH MEMBRANE PROTEIN TCPC PRECURSOR VIBRIO CHOLERAE 20-47 83-128 199-233 263-290 344-375 459-486 PTCPE_VIBCH TCP PILUS BIOSYNTHESIS PROTEIN TCPE VIBRIO CHOLERAE 24-59 77-111 PTCPF_VIBCH TCP PILUS SECRETION PROTEIN TCPF VIBRIO CHOLERAE 32-66 211-238 PTCPH_VIBCH TCP PILUS BIOSYNTHESIS PROTEIN TCPH VIBRIO CHOLERAE 95-122 PTCPI_VIBCH TCP PILUS BIOSYNTHESIS PROTEIN TCPI VIBRIO CHOLERAE 25-52 234-261 279-306 346-379 PTCPN_VIBCH TCP PILUS VIRULENCE REGULATORY PROTEIN VIBRIO CHOLERAE 48-75 PTCPO_VIBCH TCP PILUS BIOSYNTHESIS PROTEIN TCPO VIBRIO CHOLERAE 230-257 PTCPY_VIBCH TCP PILUS BIOSYNTHESIS PROTEIN TCPY VIBRIO CHOLERAE 121-148 PTCPZ_VIBCH TCP PILUS BIOSYNTHESIS PROTEIN TCPZ VIBRIO CHOLERAE 44-85 PTCR2_BACSU TETRACYCLINE RESISTANCE PROTEIN BACILLUS SUBTILIS 404-434 PTCR_BACST TETRACYCLINE RESISTANCE PROTEIN BACILLUS STEAROTHERMOPHILUS 422-453 PTCR_STAAU TETRACYCLINE RESISTANCE PROTEIN STAPHYLOCOCCUS AUREUS 404-431 PTCR_STRAG TETRACYCLINE RESISTANCE PROTEIN STREPTOCOCCUS AGALACTIAE 422-453 PTCR_STRPN TETRACYCLINE RESISTANCE PROTEIN STREPTOCOCCUS PNEUMONIAE 422-453 PTDCA_ECOLI TDCABC OPERON TRANSCRIPTIONAL ESCHERICHIA COLI 210-239 ACTIVATOR PTDCC_ECOLI TDCC PROTEIN ESCHERICHIA COLI 334-361 PTEE6_STRPY TRYPSIN-RESIST SURFACE T6 STREPTOCOCCUS PYOGENES 137-164 361-395 400-437 PROTEIN PREC PTER2_ECOLI TETRACYCLINE REPRESSOR PROTEIN ESCHERICHIA COLI 8-36 CLASS B PTER4_ECOLI TETRACYCLINE REPRESSOR PROTEIN ESCHERICHIA COLI 183-210 CLASS D PTERA_ALCSP TELLURIUM RESISTANCE PROTEIN TERA ALCALIGENES SP 48-86 PTESD_ECOLI ACYL-COA THIOESTERASE II ESCHERICHIA COLI 4-31 PTETS_ENTFA TETRACYCLINE RESISTANCE PROTEIN TETM ENTEROCOCCUS FARCALIS 2-36 130-150 179-206 217-244 PTET9_ENTFA TETRACYCLINE RESISTANCE PROTEIN TETM ENTEROCOCCUS FAECALIS 2-36 130-139 217-244 260-287 PTETC_ECOLI TRANSPOSON TN10 TETC PROTEIN ESCHERICHIA COLI 72-106 116-158 PTETM_STRLI TETRACYCLINE RESISTANCE PROTEIN STREPTOMYCES LIVIDANS 82-109 PTETM_UREUR TETRACYCLINE RESISTANCE UREAPLASMA UREALYTICUM 2-36 130-159 217-244 260-287 PROTEIN TETM PTETO_CAMCO TETRACYCLINE RESISTANCE CAMPYLOBACTER COLI 2-29 PROTEIN TETO PTETO_CAMJE TETRACYCLINE RESISTANCE CAMPYLOBACTER JEJUNI 2-36 PROTEIN TETO PTETO_STRMU TETRACYCLINE RESISTANCE STREPTOCOCCUS MUTANS 2-29 PROTEIN TETO PTETX_BACFR TETRACYCLINE RESISTANCE PROTEIN BACTEROIDES FRAGILIS 35-62 PTETX_CLOTE TETANUS TOXIN PRECURSOR CLOSTRIDIUM TETANI 274-304 540-567 615-642 692-719 985- 1240- 1012 1277 PTF2B_PYRWO TRANS INITIATION FACTOR IIB HOMOLOG PYROCOCCUS WOESBI 218-258 PTFDC_ALCEU CHLOROCATECHOL 1,2-DIOXYGENASE ALCALIGENES EUTROPHUS 2-33 PTGT_ECOLI QUEUINE TRNA-RIBOSYLTRANSFERASE ESCHERICHIA COLI 173-200 PTHD1_LACLA THREONINE DEHYDRATASE BIOSYNTHETIC LACTOCOCCUS LACTIS 267-303 PTHD2_ECOLI THREONINE DEHYDRATASE CATABOLIC ESCHERICHIA COLI 293-320 PTHDF_BACSU FURAN OXIDATION PROTEIN THDF BACILLUS SUBTILIS 153-180 192-226 282-226 391-418 PTHDF_ECOLI FURAN OXIDATION PROTEIN THDF ESCHERICHIA COLI 226-260 404-431 PTHDF_PSEPU FURAN OXIDATION PROTEIN THDF PSEUDOMONAS PUTIDA 226-260 PTHER_BACCE THERMOLYSIN BACILLUS CEREUS 4-38 240-267 PTHER_BACST THERMOLYSIN PRECURSOR BACILLUS STEAROTHERMOPHILUS 45-72 PTHER_BACTH THERMOLYSIN BACILLUS THERMOPROTEOLYTICUS 86-113 PTHET_THEVU THERMITASE THERMOACTINOMYCES VULGARIS 131-161 PTHIC_ECOLI THIC PROTEIN ESCHERICHIA COLI 232-263 301-328 PTHIG_ECOLI THIG PROTEIN ESCHERICHIA COLI 138-165 PTHPS_SULAC THERMOPSIN PRECURSOR SULFOLOBUS ACIDOCALDARIUS 135-172 199-233 PTHRC_BRELA THREONINE SYNTHASE BREVIBACTERIUM LACTOFERMENTUM 288-315 PTHTR_SACER PUTATIVE THIOSULFATE SACCHAROPOLYSPORA ERYTHRAEA 69-96 SULFURTRANSFERASE PTIG_ECOLI TRIGGER FACTOR ESCHERICHIA COLI 144-171 PTMPA_TREPA TREPONEMAL MEMBRANE PROTEIN A TREPONEMA PALLIDUM 236-266 PRECURSOR PTMPB_TREPA TREPONEMAL MEMBRANE PROTEIN B TREPONEMA PALLIDUM 44-71 PRECURSOR PTMPB_TREPH TEEPONEMAL MEMBRANE PROTEIN B TREPONEMA PHAGEDENIS 41-68 PRECURSOR PTNAB_ECOLI LOW AFFINITY TRYPTOPHAN PERMEASE ESCHERICHIA COLI 74-108 PTNP4_STAAU TRANSPOSASE STAPHYLOCOCCUS AUREUS 52-79 322-349 PTNP7_ENTFA TRANSPOSON TN9I7 RESOLVASE ENTEROCOCCUS FAECALIS 59-97 111-138 PTNPA_STAAU TRANSPOSASE A STAPHYLOCOCCUS AUREUS 151-178 PTNPB_STAAU TRANSPOSASE B STAPHYLOCOCCUS AUREUS 589-625 PTNPI_BACTU TNP I RESOLVASE BACILLUS THURINGIENSIS 7-62 65-92 174-201 PTNSB_ECOLI TRANSPOSON TN7 TRANSPOSITION ESCHERICHIA COLI 99-126 510-537 PROTEIN TNSB PTNSC_ECOLI TRANSPOSON TN7 TRANSPOSITION ESCHERICH1A COLI 32-59 314-341 PROTEIN TNSC PTNSD_ECOLI TRANSPOSON TN7 TRANSPOSITION ESCHERICHIA COLI 339-366 PROTEIN TNSD PTNSE_ECOLI TRANSPOSON TN7 TRANSPOSITION ESCHERICHIA COLI 463-490 PROTEIN TNSE PTOD1_PSEPU TOLUENE 1-2-DIOXYGENASE PSEUDOMONAS PUTIDA 36-63 ALPHA SUBUNIT PTOD2_PSEPU TOLUENE 1,2-DIOXYGENASE PSEUDOMONAS PUTIDA 119-153 BETA SUBUNIT PTODA_PSEPU TOLUENE 1-2-DIOXYGENASE SYSTEM PSEUDOMONAS PUTIDA 179-213 PTODI_PSEPO TODF PRODUCT HYDRATASE PSEUDOMONAS PUTIDA 143-170 PTOLA_ECOLI TOLA PROTEIN ESCHERICHIA COLI 101-138 PTOLC_ECOLI OUTER MEMBRANE PROTEIN TOLC PRECURSOR ESCHEIUCHIA COLI 144-178 184-211 239-266 348-443 PTOPI_SYNP7 DNA TOPOISOMERASE I SYNECHOCOCCUS SP 203-230 PTORA_ECOLI TRIMETHYLAMINE-N-OXIDE ESCHERICHIA COLI 797-824 REDUCTASE PTOXI_BORPE PERTUSSIS TOXIN SUBUNIT 1 BORDETELLA PERTUSSIS 179-206 (S1) PRECURSOR PTOX2_BORPE PERTUSSIS TOXIN SUBUNIT 2 BORDETELLA PERTUSSIS 58-85 (S2) PRECURSOR PTOXA_CLODI TOXIN A CLOSTRIDIUM DIFFICILE 20-88 99-159 204-231 342-369 373-414 847-962 966-994 997-1024 1348-1402 PTOXA_PSEAE EXOTOXIN A PRECURSOR PSEUDOMONAS AERUGINOSA 470-497 PTOXB_CLODI TOXIN B CLOSTRIDIUM DIFFICILE 38-72 133-163 199-241 825-869 923-950 1334- 1403- 1506- 1716- 1388 1433 1565 1747 PTOXS_VIBCH TRANSHEMBRANE REGULATORY VIBRIO CHOLERAE 13-40 PROT TOXS PTPFI_TREPA ANTIGEN TPFI TREPONEMA PALLIDUM 106-143 PTPIS_ECOLI TRIOSEPHOSPHATE ISOMERASE ESCHERICHIA COLI 83-110 PTPIS_MORSP TRIOSEPHOSPHATE ISOMERASE MORAXELLA SP 139-166 PTPR_PORGI TNIOL PROTEASE PRECURSOR PORPIIYROMONAS GINGIVALIS 117-144 PTR2M_AGRT3 TRYPTOPHAN 2-MONOOXYGENASE AGROBACTERIUM TUMEFACIENS 239-266 501-529 PTR2M_AGRT4 TRYPTOPHAN 2-MONOOXYGENASE AGROBACTERIUM TUMEFACIENS 239-266 501-529 PTR2M_PSESS TRYPTOPHAN 2-MONOOXYGENASE PSEUDOMONAS SYRINGAE 41-68 PTRAI_STAAU TRANSPOSASE STAPHYLOCOCCUS AUREUS 58-113 PTRA2_STAAU TRANSPOSASE STAPHYLOCOCCUS AUREUS 11-38 58-113 PTRA3_ECOLI TRANSPOSASE ESCHERICHIA COLI 721-755 PTRA3_RHIME TRANSPOSASE RHIZOBIUMMELILOTI 179-206 PTRA3_STAAU TRANSPOSASE STAPHYLOCOCCUS AUREUS 33-60 68-95 PTRA4_ECOLI TRANSPOSASE ESCOOERICHIA COLI 181-208 308-340 720-754 PTRA6_ECOLI TRANSPOSASE ESCHERICH1A COLI 51-78 PTRA6_SHISO TRANSPOSASE SHIGELLA SONNEI 51-78 200-227 231-258 PTRA7_ECOLI TRANSPOSASE ESCHERICHIA COLI 729-756 PTRA9_MYCTU PUTATIVE TRANSPOSASE MYCOBACTEROUM TUBERCULOSIS 159-186 PTRAB_BACTB IS231B PROBABLE TRANSPOSASE BACILLUS THURINGIENSIS 281-308 419-446 PTRAC_BACTB 1523IC PROBABLE TRANSPOSASE BACILLUS THURINGIENSIS 281-308 419-446 PTRAC_STAAU TRANSPOSASE STAPHYLOCOCCUS AUREUS 4-31 45-72 PTRAX_BACTB 1S231 PROBABLE TRANSPOSASE BACILLUS THURINGIENSIS 281-308 419-446 PTRA_BACTU TRANSPOSASE BACILLUS THURINGIENSIS 93-127 509-539 PTRA_PSEAE TRANSPOSASE PSEUDOMONAS AERUGINOSA 127-154 721-755 PTRB1_ECOLI TRAB PROTEIN ESCHERICHIA COLI 113-143 PTRBF_ECOLI TRBF PROTEIN ESCHERICHIA COLI 12-39 PTRBI_ECOLI TRBI PROTEIN ESCHERICHIA COLI 70-97 PTRC1_ECOLI TRAC-1 PROTEIN ESCHERICHIA COLI 1006- 1058 PTRC2_ECOLI TRAC-2 PROTEIN ESCHERICHIA COLI 1102- 1149 PTRC3_ECOLI TRAC-3 PROTEIN ESCHERICHIA COLI 884-931 PTRD1_ECOLI TRAD PROTEIN ESCHERICHIA COLI 297-348 PTREA_ECOLI PERIPLASMIC TREHALASE PRECURSOR ESCHERICHIA COLI 362-403 477-508 PTREC_ECOLI AMYLOTREHALASE ESCHERICHIA COLI 280-307 PTRFA_ECOLI TRFA TRANSCRIPTIONAL REPRESSOR PROTEIN ESCHERICHIA COLI 5-32 PTRG1_ECOLI TRAG PROTEIN ESCHERICHIA COLI 61-88 630-657 831-858 865-895 PTRG5_ECOLI TRAG PROTEIN ESCHERICHIA COLI 196-223 PTRG6_ECOLI TRAG PROTEIN ESCHERICHIA COLI 195-222 518-545 PTRI1_ECOLI TRAI PROTEIN ESCHERICHIA COLI 155-209 597-624 887-914 1350- 1377 PTRI2_ECOLI TRAI PROTEIN ESCHERICHIA COLI 155-209 597-624 887-914 1350- 1377 PTRI5_ECOLI TRAI PROTEIN ESCHERICHIA COLI 47-74 328-371 PTRI4_ECOLI TRAI PROTEIN ESCHERICHIA COLI 36-63 PTRM8_ECOLI TRAM PROTEIN ESCHERICHIA COLI 5-32 PTRMA_ECOLI TRNA (URACIL-5-)-METHYLTRANSFERASE ESCHERICHIA COLI 107-137 PTRMD_ECOLI TRNA (GUANINE-N1)-METHYLTRANSFERASE ESCHERICHIA COLI 115-142 226-253 PTRPA_BACSU TRYPTOPHAN SYNTHASE ALPHA CHAIN BACILLUS SUBTILIS 220-247 PTRPA_CAUCR TRYPTOPHAN SYNTHASE ALPHA CHAIN CAULOBACTER CRESCENTUS 241-275 PTRPA_PSEAE TRYPTOPHAN SYNTHASE ALPHA CHAIN PSEUDOMONAS AERUGINOSA 176-203 PTRPB_ACICA TRYPTOPHAN SYNTHASE BETA CHAIN ACINETOBACTER CALCOACETICUS 79-113 PTRPB_BACSU TRYPTOPHAN SYNTHASE BETA CHAIN BACILLUS SUBTILIS 76-103 318-345 PTRPB_BRELA TRYPTOPHAN SYNTHASE BETA CHAIN BREVIBACTERIUM 172-199 LACTOFERMENTUM PTRPB_LACCA TRYPTOPHAN SYNTHASE BETA CHAIN LACTOBACILLUS CASEI 83-117 PTRPB_LACLA TRYPTOPHAN SYNTHASE BETA CHAIN LACTOCOCCUS LACTIS 77-104 164-191 PTRPB_VIBPA TRYPTOPHAN SYNTHASE BETA CHAIN VIBRIO PARAHAEMOLYTICUS 56-83 PTRPC_BRELA INDOLE-3-GLYCEROL PHOSPHATE BREVIBACTERIUM 229-256 SYNTHASE LACTOFERMENTUM PTRPC_ECOLI INDOLE-3-GLYCEROL PHOSPHATE ESCHERICHIA COLI 205-232 SYNTHASE PTRPC_LACLA INDOLE-3-GLYCEROL PHOSPHATE LACTOCOCCUS LACTIS 148-175 SYNTHASE PTRPC_VIBPA INDOLE-3-GLYCEROL PHOSPHATE VIBRIO PARAHAEMOLYTICUS 346-376 SYNTHASE PTRPD_ACICA ANTHRANILATE PHOSPHORIBOSYL- ACINETOBACTER CALCOACETICUS 223-250 260-294 TRANSFERASE PTRPD_PSEAE ANTHRANILATE PHOSPHORIBOSYL- PSEUDOMONAS AERUGINOSA 205-232 TRANSFERASE PTRPD_PSEPU ANTHRANILATE PHOSPHORIBOSYL- PSEUDOMONAS PUTIDA 205-232 TRANSFERASE PTRPD_VIBPA ANTHRANILATE PHOSPHORIBOSYL- VIBRIO PARAHAEMOLYTICUS 2-29 TRANSFERASE PTRPE_BACPU ANTHRANILATE SYNTHASE BACILLUS PUMILUS 33-60 COMPONENT I PTRPE_CLOTM ANTHRANILATE SYNTHASE CLOSTRIDIUM THERMOCELLUM 165-226 COMPONENT I PTRPE_LACLA ANTHRANILATE SYNTHASE LACTOCOCCUS LACTIS 142-191 COMPONENT I PTRPE_LEPBI ANTHRANILATE SYNTHASE LEPTOSPIRA BIFLEXA 145-179 COMPONENT I PTRPE_RHIME ANTHRANILATE SYNTHASE RHIZOBIUM MELILOTI 139-166 PTRPE_SALTY ANTHRANILATE SYNTHASE SALMONELLA TYPHIMURIUM 191-218 COMPONENT I PTRPE_SULSO ANTHRANILATE SYNTHASE SULFOLOBUS SOLFATARICUS 143-183 298-328 COMPONENT I PTRPE_VIBPA ANTHRANILATE SYNTHASE VIBRIO PARAHAEMOLYTICUS 9-36 54-81 COMPONENT I PTRPG_ACICA ANTHRANILATE SYNTHASE ACINETOBACTER CALCOACETICUS 12-39 COMPONENT II PTRPG_AZOBR ANTHRANILATE SYNTHASE AZOSPIRILLUM BRASILENSE 4-31 COMPONENT II PTRPG_ECOLI ANTHRANILATE SYNTHASE ESCHERICHIA COLI 5-32 COMPONENT II PTRPG_LACLA ANTHRANILATE SYNTHASE LACTOCOCCUS LACTIS 4-31 COMPONENT II PTRPG_PSEAE ANTHRANILATE SYNTHASE PSEUDOMONAS AERUGINOSA 12-39 COMPONENT II PTRPG_SALTY ANTHRANILATE SYNTHASE SALMONELLA TYPHIMURIUM 5-32 COMPONENT II PTRPG_SERMA RANILATE SYNTHASE COMPONENT II SERRATIA MARCESCENS 9-43 PTRPO_SHIDY ANTHRANILATE SYNTHASE SHIGELLA DYSENTERIAE 5-32 COMPONENT II PTRPO_PSEAE PUTATIVE TPANSCRIPTIONAL PSEUDOMONAS AERUGINOSA 147-174 REGULATOR PTRS2_ECOLI TRAS PROTEIN ESCRERICHIA COLI 85-119 PTRT3_ECOLI RESISTANCE PROTEIN PRECURSOR ESCHERICHIA COLI 184-221 PTRY1_SALTY TRAY PROTEIN SALMONELLA TYPHIMURIUM 30-57 PTRYP_STRGR TRYPSIN PRECURSOR STREPTOMYCES GRISEUS 80-107 PTSR_STRAZ RRNA METHYLTRANSFERASE STREPTOMYCES AZUREUS 126-153 PTSST_STAAU TOXIN SHOCK SYNDROME TOXIN-1 STAPHYLOCOCCUS AUREUS 29-63 102-129 PRECURSOR PTSX_ECOLI CHANNEL-FORMING PROTEIN TSX ESCHERICHIA COLI 225-252 PRECURSOR PTTK_ECOLI HYPOTHETICAL 24.3 KD PROTEIN ESCHERICHIA COLI 81-115 PTUS_ECOLI SITE-BINDING PROTEIN ESCHERICHIA COLI 57-91 107-134 PTYCA_BACBR TYROCIDINE SYNTHETASE I BACILLUS BREVIS 117-147 534-561 1019- 1051 PTYFI_TREPE ANTIGEN TYF I TREPONEMA PERTENUE 106-143 PTYRA_BACSU POSSIBLE PREPHENATE BACILLUS SUBTILIS 244-271 312-342 DEHYDROGENASE PTYRA_ECOLI CHORISMATE MUIASE ESCHERICHIA COLI 329-370 PTYRR_ECOLI TRANSCRIPTIONAL REGULATORY ESCHERICHIA COLI 483-510 PROTEIN TYRR PTYSY_LACCA THYMIDYLATE SYNTHASE LACTO BACILLUS CASEI 139-173 PTYSY_LACLA THYMIDYLATE SYNTHASE LACTOCOCCUS LACTIS 75-109 PTYSY_STAAU THYMIDYLATE SYNTHASE STAPHYLOCOCCUS AURBUS 69-96 PUHPB_ECOLI SENSOR PROTEIN UMPB ESCHERICHIA COLI 276-303 316-343 PUMPB_SALTY SENSOR PROTEIN UHPB SALMONELLA TYPHIMURIUM 276-303 316-343 PUMUC_SALTY UMUC PROTEIN SALMONELLA TYPHIMURIUM 204-231 PUPP_ECOLI URACIL PHOSPHORIBOSYLTRANSFERASE ESCHERICHIA COLI 30-57 PURAA_ECOLI URACIL PERMEASE ESCHERICHIA COLI 350-384 PUREI_HELPY UREASE ALPHA SUBUNIT HELICOBACTER PYLORI 15-42 PUREI_PROMI UREASE ALPHA SUBUNIT PROTEUS MIRABILIS 72-99 PUREI_PROVU UREASE ALPHA SUBUNIT PROTEUS VULGAPIS 72-99 PUREI_UREUR UREASE ALPHA SUBUNIT UREAPLASMA UREALYTICUM 13-40 483-517 PURE2_HELPY UREASE BETA SUBUNIT HELICOBACTER PYLORI 62-99 PURED_HELPY UREASE OPERON URED PROTEIN HELICOBACTER PYLOPI 17-44 PUREE_PROMI UREASE ACCESSORY PROTEIN UREE PROTEUS MIRABILIS 57-84 PUREF_KLEAE UREASE ACCESSORY PROTEIN UREF KLEBSIELLA AEROGENES 20-47 PRECURSOR PUS45_LACLA SECRETED 45 KD PROTEIN PRECURSOR LACTOCOCCUS LACTIS 44-98 150-223 276-303 PUSHA_ECOLI P-SUGAR HYDROLASE PRECURSOR ESCHERICHIA COLI 56-83 PUSHA_SALTY SILENT PROTEIN USHA(0) PRECURSOR SALMONELLA TYPHIMURIUM 56-83 PUVRA_ECOLI ECOLI EXCINUCLEASE ABC SUBUNIT A ESCHERICHIA COLI 527-534 871-898 PUVRA_MICLU MICLU EXCINUCLEASE ABC SUBUNIT A MICROCOCCUS LUTEUS 579-606 619-646 684-718 922-949 PUVRA_PARDE PARDE EXCINUCLEASE ABC SUBUNIT A PARACOCCUS DENITRIPICANS 33-60 PUVRC_BACSU EXCINUCLEASE ABC SUBUNIT C BACILLUS SUBTILIS 342-372 511-538 PUVRC_ECOLI EXCINUCLEASE ABC SUBUNIT C ESCHERICHIA COLI 37-64 332-362 PUVRD_ECOLI HELICASE II ESCHERICHIA COLI 280-307 PVANA_ENTFC VANCOMYCIN RESISTANCE PROTEIN ENTEROCOCCUS FAECIUM 182-209 VANA PVANC_ENTGA VANCOMYCIN RESISTANCE PROTEIN ENTEROCOCCUS GALLINARUM 177-211 VANC PVIB4_AGRT5 VIRB4 PROTEIN PRECURSOR AGROBACTERIUM TUMEFACIENS 138-172 PVIB6_AGRT5 VIRB6 PROTEIN AGROBACTERIUM TUMEFACIENS 190-227 PVIB6_AGRT6 VIRB6 PROTEIN AGROBACTERIUM TUMEFACIENS 190-227 PVIO6_AGRT9 VIRB6 PROTEIN AGROBACTERIUM TUMEFACIENS 190-227 PVIBX_AGRT5 VIRB10 PROTEIN AGROBACTERIUM TUMEPACIENS 32-59 212-239 PVIBX_AGRT6 VIRB10 PROTEIN AGROBACTERIUM TUMEPACIENS 32-59 211-238 PVIBX_AGRT9 VIRB10 PROTEIN AGROBACTERIUM TUMEFACIENS 32-59 212-239 PVICI_AGRRA VIRC1 PROTEIN AGROBACTERIUM RHIZOGENES TUMEFACIENS 81-108 PVICI_AGRTS VIRC1 PROTEIN AGROBACTERIUM TUMEFACIENS 81-108 PVICI_AGRT6 VIRC1 PROTEIN AGROBACTERIUM TUMEFACIENS 81-108 PVID3_AGRGA VIRD3 PROTEIN AGROBACTERIUM RHIZOGENES 149-176 265-292 PVIRA_AGRG5 WIDE HOST RANGE (WHR) VIRA PROTEIN AGROBACTERIUM TUMEPACIENS 42-76 113-147 657-684 PVIRA_AGRT6 WIDE HOST RANGE (WHR) VIRA PROTEIN AGROBACTERIUM TUMEFACIENS 42-69 84-125 653-680 PVIRA_AGRR9 WIDE HOST RANGE (WHR) VIRA PROTEIN AGROBACTERIUM TUMEFACIENS 42-69 84-125 653-680 PVIRB_SHIFL VIRB TRANSCRIPTIONAL ACTIVATOR SHIGELLA FLEXNERI 37-71 107-134 187-214 252-291 PVIRF_YERRN VIRULENCE REGULON TRANSACTIVATOR YERSINIA ENTEROCOLITICA 16-46 PVIRG_AGRRA VIRG REGULATORY PROTEIN AGROBACTERIUM RHIZOGENES 34-61 PVIRL_AGRT6 LIMITED HOST RANGE (LHR) VIRA PROTE AGROBACTERIUM TUMEFACIENS 106-157 PVISC_ECOLI VISC PROTEIN ESCHERICHIA COLI 47-74 PVLPA_MYCHR VARIANT SURFACE ANTIGEN A PRECURSOR MYCOPLASMA HYORHINIS 74-112 PVM03_BORHE OUTER MEMBRANE LIPOPROTEIN 3 BORRELIA HERMSII 54-81 PRECURSOR PVM07_BORHE OUTER MEMBRANE LIPOPROTEIN 7 BORRELIA HERMSII 332-359 PRECURSOR PVM21_BORHE OUTER MEMBRANE LIPOPROTEIN 21 BORRELIA HERMSII 330-357 PRECURSOR PVM24_BORHE OUTER MEMBRANE LIPOPROTEIN 24 BORRELIA HERMSII 47-143 PRECURSOR PVM25_BORHE OUTER MEMBRANE LIPOPROTEIN 25 BORRELIA HERMSII 315-356 PRECURSOR PVNFA_AZOVI NITROGEN FIXATION PROTEIN VNFA AZOTOBACTER VINELANDII 158-188 218-245 PVNFK_AZOCH NITROGENASE VANADIUM-IRON PROTEIN AZOTOBACTER CHROOCOCCUM MCD I 68-95 PVNFK_AZOVI NITROGENASE VANADIUM-IRON PROTEIN AZOTOBACTER VINELANDII 68-95 372-403 PVRP2_SALCH 65 KD VIRULENCE PROTEIN SALMONELLA CHOLERAE-SUIS 509-536 PVRP2_SALDU 65 KD VIRULENCE PROTEIN SALMONELLA DUBLIN 511-538 PVSDE_SALOU VIRULENCE PROTEIN VSDE SALMONELLA DUBLIN 3-36 PVVHB_VIBVU CYTOLYSIN SECRETION PROTEIN VIBRIO VULNIPICUS 30-75 PWAPA_STRMU WALL-ASSOCIATED PROTEIN PRECURSOR STREPTOCOCCUS MUTANS 4-41 313-386 PWRBA_ECOLI TRP REPRESSOR BINDING PROTEIN ESCHERICHIA COLI 89-116 PXI91_ECOLI X POLYPEPTIDE ESCHERICHIA COLI 104-131 PX192_ECOLI X POLYPEPTIDE ESCHERICHIA COLI 104-131 PX193_ECOLI X POLYPEPTIDE ESCHERICHIA COLI 104-131 PXISA_ANASP EXCISASEA ANABAENA SP 4-31 89-116 135-162 PXPRB_ECOLI POSSIBLE INTEGRASE/ ESCRERICHIA COLI 268-295 RECOMBINASE XPRB PXYLA_STAXY XYLOSE ISOMERASE STAPHYLOCOCCUS XYLOSUS 411-438 PXYLK_XLEAE XYLULOSE KINASE KLEBSIELLA AEROGENES 2-29 PXYLK_LACPE XYLULOSE KINASE LACTO BACILLUS PENTOSUS 52-79 211-238 260-287 PXYLK_STAXY XYLULOSE KINASE STAPHYLOCOCCUS XYLOSUS 4-31 96-130 209-236 246-273 PXYLR_BACSU XYLOSE REPRESSOR BACILLUS SUBTILIS 75-102 260-287 PXYLR_LACPE XYLOSE REPRESSOR LACTO BACILLUS PENTOSUS 262-289 PXYLR_STAXY XYLOSE REPRESSOR STAPHYLOCOCCUS XYLOSUS 20-64 101-158 181-215 221-255 274-301 PXYLZ_PSEPU ELECTRON TRANSPER COMPONENT PSEUDOMONAS PUTIDA 51-78 104-131 PXYN4_CALSA PUTATIVE ENDO-I-4-BETA-XYLANASE CALDOCELLUM SACCHAROLYTICUM 198-225 PXYNA_BACCI O-1, 4-BETA-XYLANASE PRECURSOR BACILLUS CIRCULANS 47-74 PXYNA_BACS5 ENDO-1, 4-BETA-XYLANASE PRECURSOR BACILLUS SP 173-200 PXYNA_BACSU ENDO-1, 4-BETA-XYLANASE PRECURSOR BACILLUS SUBTILIS 47-74 PXYNA_CALSA ENDO-1, 4-BETA-XYLANASE PRECURSOR CALDOCELLUM SACCHAROLYTICUM 132-159 226-256 PXYNA_PSEFL ENDO-I, 4-BETA-XYLANASE PRECURSOR PSEUDOMONAS FLUORESCENS 33-82 PXYNB_BACPU BETA-XYLOSIDASE BACILLUS PUMILUS 459-486 PXYNB_CALSA BETA-XYLOSIDASE CALDOCELLUM SACCIIAROLYTICUM 440-474 PXYNB_PSEFL ENDO-1, 4-BETA-XYLANASE PSEUDOMONAS FLUORESCENS 51-78 251-278 317-344 475-502 PRECURSOR PXYNC_PSEFL ALPHA-L-ARABINOFURANOSIDASE PSEUDOMONAS FLUORESCENS 51-78 251-278 C PRECURSOR PXYNC_STRLI ENDO-1, 4-BETA-XYLANASE C STREPTOMYCES LIVDANS 183-210 PRECURSOR PYI4K_HALMO HYPOTHETICAL 14.9 KD PROTEIN HALOCOCCUS MORRHUAE 56-83 PY23K_STROR HYPOTHETICAL 23.1 KD PROTEIN STREPTOCOCCUS ORALIS 78-105 PY36K_METSM HYPOTHUTICAL 36.7 KD PROTEIN METHANOOREVIBACTIZR SMITHII 128-162 172-218 PYAAC_ECOLI HYPOTHETICAL 34.6 KD PROTEIN ESCHERICHIA COLI 271-298 PYAAC_PSEFL HYPOTHETICAL 33.9 KD PROTEIN PSEUDOMONAS FLUORESCENS 274-301 PYAAM_ECOLI HYPOTHETICAL 59.1 KD PROTEIN ESCHERICHIA COLI 45-72 PYAAP_ECOLI HYPOTHETICAL 56.6 KD PROTEIN ESCHERICHIA COLI 352-379 PYAAQ_ECOLI HYPOTHETICAL 28.5 KD PROTEIN ESCHERICHIA COLI 155-182 PYABC_ECOLI HYPOTHETICAL 34.9 KD PROTEIN ESCHERICHIA COLI 131-158 PYABG_ECOLI HYPOTHETICAL 89.7 KD PROTEIN ESCHERICHIA COLI 446-480 627-654 PYABN_ECOLI HYPOTHETICAL 63.9 KD PROTEIN ESCHERICHIA COLI 428-455 PYAC3_PSEAE HYPOTHETICAL 23.9 KD PROTEIN PSEUDOMONAS AERUGINOSA 48-15 150-177 PYAD2_CLOAB HYPOTHETICAL 21.6 KD PROTEIN CLOSTRIDIUM ACETODUTYLICUM 75-309 114-144 PYAD5_CLOAB HYPOTHETICAL 36.9 KD PROTEIN CLOSTRIDIUM ACETOIIUTVLICUM 132-159 165-196 210-237 PYAD6_CLOAB HYPOTHETICAL PROTEIN CLOSTRIDIUM ACETOISUTYLICUNI 21-55 PYADA_YEREN INVASIN PRECURSOR YERSINIA ENTEROCOLITICA 196-230 247-274 318-381 PYADA_YERPS INVASIN PRECURSOR YERSINIA PSEUDOTUIBERCULOSIS 255-238 297-360 PYADC_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 13-40 101-131 PYAEA_RICRI 17 KD PROTEIN RICKETTSIA RICKETTSII 107-134 PYAFB_ECOLI HYPOTHETICAL 29.4 KD PROTEIN ESCHERICHIA COLI 221-248 PYAFD_ECOLI HYPOTHETICAL 29.1 KD PROTEIN ESCHERICHIA COLI 34-71 PYAFE_ECOLI HYPOTHETICAL 23.0 KD PROTEIN ESCHERICHIA COLI 123-150 PYAIB_ESCFE HYPOTHETICAL PROTEIN ESCHERICHIA FERGUSONI 2-35 PYAMI_SALTY PUTATIVE AMIDASE SALMONELLA TYPHIMURIUM 73-100 PYATI_SYNY3 HYPOTHETICAL 13.0 KD PROTEIN SYNECHOCYSTIS SP 26-60 PYATP_MYCLE HYPO PROTEIN PUTATIVE ATP OPERON MYCOBACTERIUM LEPRAE 23-57 91-158 511-538 PYATR_BACFI HYPOL ATP-BINDINO TRANSPORT PROTEIN BACILLUS PIRMUS 211-228 PYATS_MYCCA HYPOTHETICAL PROTEIN MYCOPLASMA GALLISEPTICUNI 7-41 PYATU_MYCGA HYPOTE4ETICAL PROTEIN MYCOPLASMA GALLISEPTICUNI 29-56 60-87 PYAVS_XANCV HYPOTHETICAL 50 KD AVIRULENCE XANTEIOMONAS CAMPESTRIS 68-98 199-226 PROTEIN PYBAH_ECOLI HYPOTHETICAL 24.8 KD PROTEIN ESCHERICHIA COLE 49-79 PYBBA_ECOLI HYE-OTHETICAL ARC TRANSPORTER ESCHERICHIA COLI 6-69 PYBED_ECOLI HYPOTHETICAL 9.8 KD PROTEIN ESCHERICHIA COLE 51-82 PYBID_ECOLI HYPOTHETICAL 14.1 KD PROTEIN ESCHERICHEA COLE 97-124 PYCAE_ECOLI HYPOTHETICAL 24.5 KD PROTEIN ESCHERICHIA COLE 34-61 PYCBA_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLE 38-65 PYCBL_BACUN HYPOTHETICAL 17.3 KD PROTEIN BACTEROIDES UNIFORMIS 66-100 PYCEA_BACLA HYPOTHETICAL PROTEIN BACILLUS LAUTUS 111-138 PYCFC_ECOLI HYPOTHETICAL 22.9 KD PROTEIN ESCHERICHIA COLE 52-79 PYCHR_ALCEU HYPOTHETICAL PROTEIN ALCALEGENES EUTROPHUS 21-48 PYCIB_ECOLI HYPOTHETICAL 20.8 KD PROTEIN ESCHERICHIA COLE 16-43 PYCIF_ECOLI 18.6 KD PROTEIN ESCHERICHIA COLE 7-68 134-166 PYCIK_ECOLI HYPOTHETICAL PROTEIN ESCHERECHEA COLE 35-62 PYCLI_ECOLI HYPOTHETICAL 43.3 KD PROTEIN ESCHERICHIA COLI 54-81 PYCP3_SYNPY HYPOTHETICAL 29.3 KD PROTEIN SYNECHOCOCCUS SP 194-221 PYCP3_SYNY3 HYPOTHETECAL 28.0 KD PROTEIN SYNECHOCYSTES SP 7-34 120-154 PYCP5_SYNY3 HYPOTHETICAL 39.5 KD PROTEIN SYNECHOCYSTIS SP 277-308 PYCPG_MASLA HYPOTHETICAL PROTEIN MASTEGOCLADUS LAMINOSUS 2-29 PYCPY_PSEA9 HYPO PHYCOCYANIN OPERON PROTEIN PSEUDANADAENA SP 380-407 PYCR2_BACTK HYPOTHETICAL 29.1 KD PROTEIN BACILLUS THURINOIENSIS 42-74 153-180 PYCS5_ECOLE HYPOTHETICAL PROTEIN PRECURSOR ESCHERICHEA COLE 32-59 PYCWS_BACSU HYPOTHETICAL PROTEIN BACILLUS SUISTILIS 3-30 59-86 PYD3M_HERAU HYPOTHETICAL 68.4 KD PROTEEN HERPETOSIPHON AURANTIACUS 12-39 151-178 360-416 PYDBA_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 32-66 117-144 163-216 233-267 295-329 458-485 676-717 1136- 1499- 1163 1530 PYDBD_ECOLI HYPOThETICAL PROTEIN ESCHERICHIA COLI 80-107 PYDDB_ECOLI HYPOTHETICAL 86.7 KD PROTEIN ESCHERICHIA COLI 606-641 683-714 126-753 PYDDC_ECOLI HYPOTHETICAL 80.8 KD PROTEIN ESCHERICHIA COLI 373-400 421-452 621-648 PYDDD_ECOLI HYPOTHETICAL 24.1 KD PROTEIN ESCHERICHIA COLI 133-174 PYDEH_ECOLI HYPOTHETICAL 20.5 KD PROTEIN ESCHERICHIA COLI 96-130 PYDEJ_ECOLI HYPOTHETICAL 18.3 KD PROTEIN ESCHERICHIA COLI 4-38 PYDEK_ECOLI HYPOTHETICAL 65.5 KD PROTEIN ESCHERICHIA COLI 333-360 524-551 565-592 PYDNN_BORBU HYPOTHETICAL 11.2 KD PROTEIN BORRELIA BURODORFERI 6-36 PYDO1_SULSO HYPOTHETICAL 14.7 KD PROTEIN SULFOLOBUS SOLFATARICUS 17-58 71-103 PYDO3_SULSO HYPOTHETICAL 16.9 KD PROTEIN SULFOLOBUS SOLFATARICUS 11-38 PYEBA_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 93-120 PYEBG_ECOLI HYPOTHETICAL 10.7 KD PROTEIN ESCHERICHIA COLI 50-77 PYEEE_ECOLI HYPOTHETICAL 38.1 KD PROTEIN ESCHERICHIA COLI 43-70 PYEEF_ECOLI HYPO 49.8 KD TRANSPORT PROTEIN ESCHER1CHIA COLI 147-174 PYEGA_ECOLI HYPOTHETICAL IN DCD 3REGION ESCHERICHIA COLI 145-172 PYEHA_ECOLI HYPOTHETICAL 36.9 KD PROTEIN ESCHERICHIA COLI 69-106 283-310 PYEHB_ECOLI HTPOTHETICAL 92.3 KD PROTEIN ESCHERICHIA COLI 151-178 501-545 PYEHD_ECOLI HYPOTHETICAL 19.1 KD PROTEIN ESCHERICHEA COLI 96-123 PYEHF_ECOLI HYPOTITICAL 141.0 KD PROTEIN ESCHERICHIA COLI 543-570 PYEHI_ECOLI HYPOTHETICAL 138.1 KD PROTEIN ESCHERICHIA COLI 35-70 102-129 PYEHU_ECOLI HYPOTHETICAL 62.1 KD PROTEIN ESCHERICHIA COLI 326-353 PYEIC_ECOLI HYPOTHETICAL 33.6 KD PROTEIN ESCHERICHIA COLI 46-80 PYEIF_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 61-88 PYEIJ_ECOLI HYPOTHETICAL 43.4 KD PROTEIN ESCHERICHIA COLI 15-42 PYEJA_ECOLI HYPOTHETICAL ABC TRANSPORTER ESCHERICHIA COLI 83-110 PYEJF_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 453-480 PYEJO_ECOLI HYPOTHETICAL 99.2 KD PROTEIN ESCHERICHIA COLI 399-433 PYFHD_ECOLI HYPOTHETICAL 40.6 KD PROTEIN ESCHERICHIA COLI 175-202 PYFU2_ECOLI HYPOTHETICAL 30.6 KD PROTEIN BACILLUS STEAROTHERMOPHILUS 133-160 PYFXK_BRAJA HYPOTHETICAL PROTEIN BRADYRHIZOBIUM JAPONICUM 109-130 PYGAP_BACME HYPOTHETICAL 37.7 KD PROTEIN BACILLUS MEGATERIUM 40-67 PYGFD_ECOLI HYPOTHETICAL 29.4 KD PROTEIN ESCHERICHIA COLI 214-241 PYGGB_ECOLI HYPOTHETICAL 30.9 KD PROTEIN ESCHERICHIA COLI 225-232 PYGGG_ECOLI HYPOTHETICAL 31.3 KD PROTEIN ESCHERICHIA COLI 209-236 PYGI2_BACTU HYPOTHETICAL 22.8 KD PROTEIN BACILLUS THURINGIENSIS 26-61 PYGI2_PSEPU HYPOTHETICAL 32.4 KD PROTEIN PSEUDOMONAS PUTIDA 145-172 PYGIF_ECOLI HYPOTHETICAL 48.4 KD PROTEIN ESCHERICHIA COLI 223-264 PYGL4_BACST HYPOTHETICAL 35.3 KD PROTEIN BACILLUS STEAROTHERMOPHILUS 6-33 PYGL5_BACST HYPOTHETICAL PROTEIN BACILLUS STEAROTHERMOPHILUS 182-209 PYGLN_BACCE HYPOTHETICAL 13 KD PROTEIN BACILLUS CEREUS 79-124 PYGRD_BACSU HYPOTHETICAL PROTEIN BACILLUS SUBTILIS 20-47 PYGRE_BACSU HYPOTHETICAL 17.1 KD PROTEIN BACILLUS SUBTILIS 84-111 PYGRP_BACSU HYPOTHETICAL 39.0 KD PROTEIN BACILLUS SUBTILIS 98-125 PYGRP_CLOAB HYPOTHETICAL 38.8 KD PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 160-210 PYGT2_STRMU HYPOTHETICAL PROTEIN 2 STREPTOCOCCUS MUTANS 4-40 110-138 235-262 PYHAB_ECOLI HYPOTHETICAL 20.6 KD PROTEIN ESCHERICHIA COLI 20-66 PYHAC_ECOLI HYPOTHETICAL 43.2 KD PROTEIN ESCHERICHIA COLI 69-96 PYHAF_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 44-71 138-163 PYHBG_ECOLI PROBABLE ABC TRANSPORTER ESCHERICHIA COLI 176-203 PYHBG_PSEPU PROBABLE ABC TRANSPORTER PSEUDOMONAS PUTIDA 74-101 106-133 147-174 PYHBG_THIFE PROBABLE ABC TRANSPORTER THIO BACILLUS FERROOXIDANS 113-140 PYHDF_ECOLI HYPOTHETICAL 53.4 KD PROTEIN ESCHERICHIA COLI 267-297 PYHEM_BACSU HYPOTHETICAL 32.0 KD PROTEIN BACILLUS SUBTILIS 222-253 PYHET_ANASP HYPOTHETICAL PROTEIN ANABAENA SP 72-99 PYHHA_ECOLI HYPOTHETICAL 16.6 KD PROTEIN ESCHERICHIA COLI 56-84 PYHHG_ECOLI HYPOThETICAL 15.1 KD PROTEIN ESCHERICHIA COLI 43-77 PYHHH_ECOLI HYPOTHETICAL 14.5 KD PROTEIN ESCHERICHIA COLI 43-73 PYH11_LACLA HYPOTHETICAL PROTEIN LACTOCOCCUS LACTIS 167-194 PYNI3_LACLA HYPOTHETICAL 38.0 KD PROTEIN LACTOCOCCUS LACTIS 90-124 132-139 PYHI6_LACLA HYPOTHETICAL 30.7 KD PROTEIN LACTOCOCCUS LACTIS 92-148 PYHI8_LACLA HYPOTHETICAL 30.7 KD PROTEIN LACTOCOCCUS LACTIS 77-104 156-183 PYHLB_STAAU HYPOTHERICAL PROTEIN STAPHYLOCOCCUS AUREUS 18-67 PYHLB_VIBCH HYPOTHERICAL 18.3 KD PROTEIN VIBRIO CHOLERAE 99-126 PYHMF_METFE HYPOTHETICAL 32.2 KD PROTEIN METHAI4OTHERMUS FERVIDUS 106-133 PYHSI_CLOAB HYPOTHETICAL 11.0 KD PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 41-85 PYHSA_CLOAB HYPOTHETICAL 20.6 KD PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 98-125 PYHSC_CLOAB HYPOTHETICAL 42.4 KD PROTEIN CLOSTRIDIUM ACETOBUTYLICUM 25-52 208-253 276-310 PYHVI_LACHE HYPOTHETICAL PROTEIN LACYO BACILLUS VETICUS 93-120 127-154 PYHYA_PSESN HYPOTHETICAL PROTEIN PSEUDOMONAS SP 217-266 PYHI_HALHA HYPOTHETICAL 38.0 KD PROTEIN HALOBACTERIUM HALOBIUM 245-272 PY132_MYCTU HYPOTHETICAL 6.6 KD PROTEIN MYCOBACTERIUM TUBERCULOSIS 19-46 PY142_PSEAM HYPOTHETICAL 42.6 KD PROTEIN PSEUDOMONAS AMYLODERAMOSA 9-36 PY148_METSM HYPOTHETICAL 48.3 KD PROTEIN METHANOBREVIBACTER SMITHII 73-109 154-184 338-365 PYI52_HALHA HYPOTHETICAL 31 KD PROTEIN HALOBACTERIUM HALOBIUM 86-113 PYIBB_ECOLI HYPOTHETICAL 34.0 KD PROTEIN ESCHERICHIA COLI 202-239 PYIBD_ECOLI HYPOTHETICAL PROTEIN ESCHERICHIA COLI 9-43 PYIBF_ECOLI HYPOTHETICAL 22.6 KD PROTEIN ESCHERICHIA COLI 131-158 PYIDE_ECOLI HYPOTHETICAL 58.9KD PROTEIN ESCHERICHIA COLI 86-113 182-209 277-304 PYIDI_ECOLI HYPOTHETICAL 15.7 KD PROTEIN ESCHERICHIA COLI 56-83 PYIDK_ECOLI HYPOTHETICAL 62.1 KD PROTEIN ESCHERICHIA COLI 2-39 PYIDP_ECOLI HYPOTHETICAL 27.3 KD PROTEIN ESCHERICH1A COLI 63-97 PYIBA_ECOLI HYPOTHETICAL 49.2 KD PROTEIN ESCHERICH1A COLI 221-248 PYJEC_ECOLI HYPOTHETICAL 60.6 KD PROTEIN ESCHERICHIA COLI 20-58 270-297 PYIEC_ERWCH HYPOTHETICAL PROTEIN ERWINIA CHRYSANTHEMI 22-67 PYIED_ECOLI HYPOTHETICAL 34.8 KD PROTEIN ESCHERICHIA COLI 86-120 PYIEG_ECOLI HYPOTHETICAL 46.9 KD PROTEIN ESCHERICHIA COLI 293-327 PYIEH_ECOLI HYPOTHETICAL 24.7 KD PROTEIN ESCHERICHIA COLI 51-78 PYIHB_ECOLI HYPOThETICAL 21.2 KD PROTEIN ESCHERICHIA COLI 13-40 PYIHD_ECOLI HYPOTHETICAL 10.3 KD PROTEIN ESCHERICHIA COLI 28-55 PYIHY_ECOLI HYPOTHETICAL 54.1 KD PROTEIN ESCHERICHIA COLI 272-306 PYIHI_ECOLI HYPOTHETICAL 19.1 KD PROTEIN ESCHERICHIA COLI 112-139 PYIHK_ECOLI HYPOTHETICAL 65.4 KD PROTEIN ESCHERICHIA COLI 4-31 PYIHM_ECOLI HYPOTHETICAL 36.9 KO PROTEIN ESCHERICHIA COLI 83-110 120-154 297-324 PYIHO_ECOLI HYPOTHETICAL 81.8 KD PROTEIN ESCHERICHIA COLI 612-646 PYIHP_ECOLI HYPOTHETICAL 53.1 KD PROTEIN ESCHERICHIA COLI 357-384 PYIHV_ECOLI HYPOTHETICAL 31.9 KD PROTEIN ESCHERICHIA COLI 72-99 PYIHX_ECOLI HYPOTHETICAL 23.5 KO PROTEIN ESCHERICHIA COLI 9-36 PYIHE_ECOLI HYPOTHETICAL 15.9 KD PROTEIN ESCHERICHIA COLI 6-33 PYHP_ECOLI HYPOTHETICAL 32.9 KD PROTEIN ESCHERICHIA COLI 22-63 PYIIU_ECOLI HYPOTHETICAL 9.6 KD PROTEIN ESCHERICHIA COLI 28-71 PYIJC_ECOLI HYPOTHETICAL 26.6 KD PROTEIN ESCHERICHIA COLI 136-163 PYIJH_ECOLI HYPOTHETICAL 78.3 KD PROTEIN ESCHERICHIA COLI 225-263 PYIJK_ECOLI HYPOTHETICAL 11.2 KD PROTEIN ESCHERICHIA COLI 26-53 PYIJO_ECOLI HYPOTHETICAL 32.1 KO PROTEIN ESCHERICHIA COLI 214-241 PYHP_ECOLI HYPOTHETICAL 66.6 KD PROTEIN ESCHERICHIA COLI 110-137 419-446 PYINL_LISMO HYPOTHETICAL 26.8 KD PROTEIN LISTERIA MONOCYTOGENES 7-34 PYISI_SHISO INSERTION ELEMENT 1S600 SHIGELLA SONNEI 125-152 PYISI_STRCO HYPOTHETICAL 43.6 KD PROTEIN STREPTOMYCES COELICOLOR 125-152 PYIS3_SHISO INSERTION ELEMENT 1S629 SHIGELLA SONNEI 66-100 PYISP_BACSP HYPOTHETICAL 42.1 KD PROTEIN BACILLUS SP 312-339 PYJAG_ECOLI HYPOTHETICAL 22.6 KD PROTEIN ESCHERICHIA COLI 51-78 PYJAI_ECOLI HYPOTHETICAL 20.4 KD PROTEIN ESCHERICHIA COLI 88-122 PYJBH_ECOLI HYPOTHETICAL 78.5 KD PROTEIN ESCHERICHIA COLI 93-120 PYJBL_ECOLI HYPOTHETICAL 9.7 KD PROTEIN ESCHERICHIA COLI 30-57 PYJBM_ECOLI HYPOTHETICAL 26.7 KD PROTEIN ESCHERICHIA COLI 112-149 PYJBQ_ECOLI HYPOTHETICAL 13.7 KD PROTEIN ESCHERICHIA COLI 2-29 PYJCC_ECOLI HYPOTHETICAL 60.8 KD PROTEIN ESCHERICHIA COLI 38-65 414-441 451-492 PYJIA_ECOLI HYPOTHETICAL 17.5 KD PROTEIN PRECURSOR ESCHERICHIA COLI 35-69 88-129 PYKAB_BACFI HYPOTHETICAL 48.8 KD PROTEIN BACILLUS FIRMUS 321-355 PYLAI_LACAC HYPOTHETICAL PROTEIN LACTO BACILLUS ACIDOPHILUS 47-74 PYLA2_LACAC HYPOTHETICAL 14.5 KD PROTEIN LACTO BACILLUS ACIDOPHILUS 15-42 PYLA3_LACAC HYPOTHETICAL 14.4 KD PROTEIN LACTO BACILLUS ACIDOPHILUS 47-74 PYLAC_SULSO HYPOTHETICAL 24.4 KD PROTEIN SULFOLOBUS SOLFATAJUCUS 23-50 PYLP3_PSEPU HYPOTHETICAL 44.7 KD PROTEIN PSEUDOMONAS PUTIDA 186-213 314-34 I PYLPA_YEREN YLPA LIPOPROTEIN PRECURSOR YERSINIA ENTEROCOLITICA 184-221 PYLT3_ANAVA HYPOTHETICAL 22.6 KD PROTEIN ANABAENA VARIADILIS 172-199 PYLUD_LACLA HYPOTHETICAL 29.7 KD PROTEIN LACTOCOCCUS LACTIS 35-70 PYME2_BACSU HYPOTHETICAL 35.3 KD PROTEIN BACILLUS SUBTILIS 52-79 PYMG2_MYCGE HYPOTHETICAL 114.4 KD PROTEIN MYCOPLASMA GENITALIUM 56-83 159-193 420-445 PYNGA_CLOPE HYPOTHETICAL PROTEIN CLOSTRIDIUM PERFRINGENS 139-166 PYNOB_CLOPE HYPOTHETICAL 31.2 KD PROTEIN CLOSTRIDIUM PERFRINGENS 12-49 63-97 182-211 PYNTI_METTL HYPOTHETICAL PROTEIN METHANOCOCCUS THERMOLITHOTROPHICUS 55-89 PYNQI_PAKDE HYPOTHETICAL 9.3 KD PROTEIN PARACOCCUS DENITRIFICANS 52-86 PYNT3_ANASP HYPOTHETICAL 28.1 KD PROTEIN ANABAENA SP 171-198 PYNTS_ANASP HYPOTHETICAL PROTEIN ANABAENA SP 87-165 PYOHD_ECOLI HYPOTHETICAL 21.4 KD PROTEIN ESCHERICHIA COLI 5-32 PYOHO_ECOLI HYPOTHETICAL 43.3 KD PROTEIN ESCHERICHIA COLI 104-171 289-316 PYOJA_ECOLI HYPOTHETICAL 15.0 KD PROTEIN ESCHERICHIA COLI 17-44 PYOJE_ECOLI HYPOTHETICAL 93.5 KD PROTEIN ESCHERICHIA COLI 221-248 PYOJF_ECOLI HYPOTHETICAL 9.5 KD PROTEIN ESCHERICHIA COLI 41-82 PYOJH_ECOLI HYPOTHETICAL 54.3 KD PROTEIN ESCHERICHIA COLI 145-193 PYOJJ_ECOLI HYPOTHETICAL 36-2 KD PROTEIN ESCHERICHIA COLI 94-121 PYOM2_PHOS9 HYPOTHETICAL PROTEIN IN OMPH 3′REGION PHOTOBACTERIUM SP 32-59 PYOPH_YEREN PROTEIN-TYROSINE PHOSPHATASE YOPH YERSINIA ENTEROCOLITICA 63-105 PYOPH_YERPS PROTEIN-TYROSINE PHOSPHATASE YOPH YERSINIA PSEUDOTUBERCULOSIS 63-105 PYOPH_YEREN OUTER MEMBRANE PROTEIN YOPN YERSINIA ENTEROCOLITICA 23-50 66-93 235-262 PYOPN_YERPS OUTER MEMBRANE PROTEIN YOPN YERSINIA PSEUDOTUBERCULOSIS 23-50 66-93 235-262 PYOPQ_YEREN YOPQ PROTEIN PRECURSOR YERSINIA ENTEROCOLITICA 6I-88 PYORA_HAEIN HYPOTHETICAL 31.5 KD PROTEIN HAEMOPHILUS INFLUENZAE 147-174 PYORA_LISMO HYPOThETICAL 25.6 KD PROTEIN LISTERIA MONOCYTOGENES 32-77 PYORA_PYRWO HYPOTHETICAL 24.7 KD PROTEIN PYROCOCCUS WOESEI 183-210 PYORB_HAEIN HYPOTHETICAL 19.8 KD PROTEIN HAEMOPHILUS INFLUENZAE 39-66 PYORC_HAEIN HYPOTHETICAL 19.9 KD PROTEIN HAEMOPHILUS INFLUENZAE 49-79 PYORE_HAEIN .8 KD PROTEIN HAEMOPHILUS INFLUENZAE 47-74 82-109 PYORF_HAEIN 26.8 KD PROTEIN HAEMOPHILUS INFLUENZAE 99-229 PYORH_HAEIN HYPOTHETICAL 13.7 KD PROTEIN HAEMOPHILUS INFLUENZAE 7-34 PYORI_HAEIN 95.4 KD PROTEIN HAEMOPHILUS INFLUENZAE 416-450 688-722 PYORQ_BACSU HYPOTHETICAL 34 KD PROTEIN BACILLUS SUBTILIS 148-175 PYORX_PYRWO HYPOTHETICAL PROTEIN PYROCOCCUS WOESEI 66-93 PYORZ_LISMO HYPOTHETICAL 16.9 KD PROTEIN LISTERIA MONOCYTOGENES 27-54 PYPIS_STAAU HYPOTHETICAL 15.5 KD PROTEIN STAPHYLOCOCCUS AUREUS 71-98 110-137 PYP23_BACSU HYPOTHETICAL 22.5 KD PROTEIN BACILLUS SUBTILIS 57-84 PYP23_STAAU HYPOTHETICAL 22.2 KD PROTEIN STAPHYLOCOCCUS AUREUS 29-70 PYP2A_STAAU HYPOTHETICAL 26.9 KD PROTEIN STAPHYLOCOCCUS AUREUS 34-104 PYP2B_STAAU HYPOTHETICAL 27.0 KD PROTEIN STAPHYLOCOCCUS AUREUS 23-60 62-89 179-206 PYP2C_STAAU HYPOTHETICAL 27.7 KD PROTEIN STAPHYLOCOCCUS AUREUS 13-83 129-176 PYPHI_SYNP2 HYPOTHETICAL 18.1 KD PROTEIN SYNECHOCOCCUS SP 34-61 PYPI6_CLOPE HYPOTHETICAL 19.7 KD PROTEIN CLOSTRIDIUM PERFRINGENS 7-34 43-77 83-149 PYPI9_CLOPE HYPOTHETICAL 34.5 KD PROTEIN CLOSTRIDIUM PERFRINGENS 2-59 PYPIX_CLOPE HYPOTHETICAL 18.4 KD PROTEIN CLOSTRIDIUM PERFRINGENS 110-137 263-290 303-340 PYPIY_PSEAE HYPOTHETICAL 38.5 KD PROTEIN PSEUDOMONAS AERUGINOSA 22-52 PYPP_BACSU HYPOTHETICAL PROCESSING PROTEASE BACILLUS SUBTILIS 329-356 PYPQQ_KLEPN HYPOTHETICAL PROTEIN KLEBSIELLA PNEUMONIAE 243-270 PYPS2_PLEBO HYPOTHETICAL 13.1 KD PROTEIN PLECTONEMA BORYAMIM 27-54 PYPVI_METTF HYPOTHETICAL 40.7 KD PROTEIN METHANOBACTERIUM THERMOFORMICICUM 58-85 308-335 PYPV _METTF HYPOTHETICAL 22.5 KD PROTEIN METHANOBACTERIUM THERMOFORMICICUM 3-30 PYPV7_METTF HYPOThETICAL 17.3 KD PROTEIN METHANOBACTERIUM THERMOFORMICICUM 69-117 PYPVB_METTF HYPOTHETICAL 49-6 KD PROTEIN METHANOBACTERIUM THERMOFORMICICUM 333-360 389-430 PYPYB_BACSU HYPOTHETICAL 72.4 KD PROTEIN BACILLUS SUBTILIS 602-636 PYPZI_METTF HYPOTHETICAL 40.6 KD PROTEIN METHANOBACTEPIUM THERMOFORMICICUM 58-85 308-335 PYPZ2_METTF HYPOTHETICAL 33.1 KD PROTEIN METHANOBACTERIUM THERMOFORMICICUM 38-65 154-188 PYPES_METTF HYPOTHETICAL 54-1 KD PROTEIN METHANOBACTEPIUM THERMOFORMICICUM 193-220 226-253 381-408 PYPZ7_METTF HYPOTHETICAL 9.7 KD PROTEIN METHANOBACTERIUM THERMOFORMICICUM 3-78 PYRIS_THEPE HYPOTHETICAL 18.7 KD PROTEIN THERMOFILUM PENDENS 82-109 PYRBI_HALCU HYPOTHETICAL 40 KD PROTEIN HALOBACTERIUM CUTIRUBRUM 20-51 PYREC_SYNP2 HYPOTHETICAL 28.7 KD PROTEIN SYNECHOCOCCUS SP 49-76 PYRPO_SALTY HYPOTHETICAL 40-6 KD PROTEIN SALMONELLA TYPHIMURIUM 143-190 PYRF2_SALTY HYPOTHETICAL 51.0 KO PROTEIN SALMONELLA TYPHIMURIUM 428-455 PYRF5_SALTY HYPOTHETICAL 20.6 KD PROTEIN SALMONELLA TYPHIMURIUM 29-56 PYRF6_SALTY HYPOTHETICAL 36.6 KD PROTEIN SALMONELLA TYPHIMURIUM 130-157 PYRO2_LACLA HYPOTHETICAL PROTEIN LACTOCOCCUS LACTIS 340-167 PYRLI_METVA HYPOTHETICAL PROTEIN METHANOCOCCUS VANNIELII 40-93 129-156 PYRP2_METVA HYPOTHETICAL 11.6 KD PROTEIN METHANOCOCCUS VANNIELII 13-40 PYRP2_SULAC HYPOTHETICAL 11.5 KD PROTEIN SULFOLOBUS ACIDOCALDARIUS 5-51 PYRP3_SULAC HYPOTHETICAL 14.5 KD PROTEIN SULFOLOBUS ACIDOCALDARIUS 37-71 PYRTP_BACSU HYPOTHETICAL 25.3 KD PROTEIN BACILLUS SUBTILIS 29-56 PYRTS_BACSU HYPOTHETICAL 11.4 KD PROTEIN BACILLUS SUBTILIS 3-30 44-81 PYSCB_YEREN HYPOTHETICAL YSC OPERON PROTEIN E YERSINIA ENTEROCOLITICA 90-121 PYSCC_YEREN YSC OPERON PROTEIN C PRECURSOR YERSINIA ENTEROCOLITICA 38-72 363-399 PYSCD_YEREN YSC OPERON PROTEIN D YERSINIA ENTEROCOLITICA 242-269 PYSCH_YEREN YSC OPERON PROTEIN H YERSINIA ENTEROCOLITICA 28-58 PYSCH_YERPS YSC OPERON PROTEIN H YERSINIA PSEUDOTUBERCULOSIS 28-58 PYSCI_YEREN YSC OPERON PROTEIN I YERSINIA ENTEROCOLITICA 49-76 PYSCI_YERPS YSC OPERON PROTEIN I YERSINIA PSEUDOTUBERCULOSIS 49-76 PYSCJ_YEREN YSC OPERON LIPOPROTEIN J PRECURSOR YERSINIA ENTEROCOLITICA 99-126 PYSCJ_YERPS YSC OPERON LIPOPROTEIN J PRECURSOR YERSINIA PSEUDOTUBERCULOSIS 99-126 PYSCL_YEREN YSC OPERON PROTEIN L YERSINIA ENTEROCOLITICA 41-68 PYSCL_YERPS YSC OPERON PROTEIN L YERSINIA PSEUDOTUBERCULOSIS 41-68 PYSMA_SERMA HYPOTHETICAL 9.5 KD PROTEIN SERRATIA MARCESCENS 11-70 PYSO2_DESAM HYPOTHETICAL 28.3 KD PROTEIN DESULFUROLOBUS AMBIVALENS 68-109 PYSO3_DESAM HYPOTHETICAL PROTEIN DESULFUROLOBUS AMBIVALENS 65-155 PYSP2_LEPIN HYPOTHETICAL PROTEIN LEPTOSPIRA INTERROGANS 6-33 60-94 PYSRI_MYCMY HYPOTHETICAL PROTEIN MYCOPLASMA MYCOIDES 35-99 185-227 300-327 PYSY3_BACSU HYPOTHETICAL 19.6 KD PROTEIN BACILLUS SUBTILIS 72-99 PYSYN_METFE HYPOTHETICAL PROTEIN METHANOTHERMUS FERVIDUS 78-105 PYT37_STRFR HYPOTHETICAL 37.1 KD PROTEIN STREPTOMYCES FRADIAE 246-273 PYTDK_BACSU HYPOTHETICAL 35.6 KD PROTEIN BACILLUS SUBTILIS 244-271 279-306 PYTRE_LEPBI HYPOTHETICAL 22 KD PROTIEN LEPTOSPIRA BIFLEXA 84-113 PYTRP_LACLA HYPOTHETICAL 13.3 KD PROTEIN LACTOCOCCUS LACTIS 76-112 PYTSI_BACSU HYPOTHETICAL 20 KD PROTEIN BACILLUS SUBTILIS 37-64 PYTSF_SPICI HYPOTHETICAL 23.8 KD PROTEIN SPIROPLASMA CITRI 102-149 PYX04_BACSU HYPOTHETICAL 12.8 KD PROTEIN BACILLUS SUBTILIS 37-64 68-95 PYX06_BACSU HYPOTHETICAL 21.0 KD PROTEIN BACILLUS SUBTILIS 142-169 PYX13_BACSU HYPOTHETICAL 26.0 KD PROTEIN BACILLUS SUBTILIS 17-51 PYX15_BACSU HYPOTHETICAL 61.8 KD PROTEIN BACILLUS SUBTILIS 165-207 262-289 PYX18_BACSU HYPOTHETICAL 66.8 KD PROTEIN BACILLUS SUBTILIS 3-30 34-61 94-142 PYX19_BACSU HYPOTHETICAL 31.3 KD PROTEIN BACILLUS SUBTILIS 56-83 85-112 PYX20_BACSU HYPOTHETICAL 23.2 KD PROTEIN BACILLUS SUBTILIS 24-58 PYX12_ANASP HYPOTHETICAL 18.9 KD PROTEIN ANABAENA SP 77-104 PYXYB_CALSA HYPOTHETICAL 10.7 KD PROTEIN CALDOCELLUM SACCHAROLYTICUM 9-39 PYXYC_CALSA HYPOTHETICAL PROTEIN CALDOCELLUM SACCHAROLYTICUM 41-94 PYZEI_ECOLI HYPOTHETICAL 16.7 KD PROTEIN ESCHERICHIA COLI 41-78

TABLE IX 107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY FOR ALL HUMAN PROTEINS PCGENE 107 × 178 × 4 Motif Search on All Human Protein Sequences FILE NAME PROTEIN AREA 1 AREA 2 AREA 3 AREA 4 AREA 5 AREA 6 AREA 7 AREA 8 AREA 9 P143F_HUMAN 14-3-3 PROTEIN ETA (PROTEIN AS1)(FRAGMENT). 101-135 P143S_HUMAN 14-3-3 PROTEIN HOMOGLOG STRATIFIN. 45-72 P143T_HUMAN 14-3-3 PROTEIN THETA (14-3-3 PROTEIN T-CELL)(HS1 PROTEIN). 61-92 P143Z_HUMAN 14-3-3 PROTEIN ZETA (PROTEIN KINASE C INHIBITOR PROTEIN-1)(KCIP-1) 28-55 P1A23_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-29 (AW-19) A*2901 ALPHA CHAIN 87-114 P1A24_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-29 (AW-19) A*2902 ALPHA CHAIN 87-114 P1B02_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-7 B*0702 ALPHA CHAIN 87-114 P1B05_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-13 B*1301 ALPHA CHAIN 87-114 148-182 P1B10_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-75 (B-15) B*1502 ALPHA CHAIN 84-115 P1B11_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-72 (BW-70) B*1503 ALPHA 84-115 P1B12_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-62 B*1504 ALPHA CHAIN 76-107 P1B13_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-18 B*1801 ALPHA CHAIN 84-115 P1B21_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 ALPHA CHAIN 84-115 P1B22_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3502 ALPHA CHAIN 84-115 P1B23_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3503 ALPHA CHAIN 84-115 P1B24_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3504 ALPHA CHAIN 76-107 P1B25_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3505 ALPHA CHAIN 84-115 P1B26_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3506 ALPHA CHAIN 84-115 P1B27_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3507 ALPHA CHAIN 84-115 P1B28_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3508 ALPHA CHAIN 84-115 P1B29_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-37 B*3701 ALPHA CHAIN 88-115 P1B32_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-39 B*3902 ALPHA CHAIN 87-114 P1B33_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-60 (B-40) B*4001 ALPHA CHAIN 60-91 P1B34_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-40 B*4002 ALPHA CHAIN 84-115 P1B35_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-40 B*4003 ALPHA CHAIN 84-115 P1B36_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-40 B*4004 ALPHA CHAIN 84-115 P1B38_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-41 B*4101 ALPHA CHAIN 84-115 P1B39_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-42 B*4201 ALPHA CHAIN 87-114 P1B40_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-44 (B-12) B*4401 ALPHA CHAIN 84-111 P1B41_HUMAN HLA CLASS I HISTOCOMPATLBILITY ANTIGEN, BW-44 (B-12) B*4402 ALPHA CHAIN 87-114 P1B42_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-44 (B-12) B*4403 ALPHA CHAIN 87-114 P1B43_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-45 (B-12) B*4501 ALPHA CHAIN 84-115 P1B44_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-46 B*4601 ALPHA CHAIN 87-114 P1B45_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-47 B*4701 ALPHA CHAIN 88-115 P1B46_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-48 B*4801 ALPHA CHAIN 84-115 P1B47_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-49 (B-21) B*4901 ALPHA CHAIN 87-114 P1B48_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-50 (B-21) B*5001 ALPHA CHAIN 84-115 P1B53_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-52 (B-5) B*5201 ALPHA CHAIN 87-114 P1B55_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-54 (BW-22) B*5401 ALPHA 87-114 P1B56_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-55 (BW-22) B*5501 ALPHA 87-114 P1B57_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-55 (BW-22) B*5502 ALPHA 87-114 P1B58_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-56 (BW-22) B*5601 ALPHA 87-114 P1B59_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-56 (BW-22) B*5602 ALPHA 87-114 P1C01_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-1 CW*0101 ALPHA CHAIN 87-114 P1C02_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-1 CW*0102 ALPHA CHAIN 87-114 P1C03_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-2 CW*0201 ALPHA CHAIN 87-114 P1C04_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-2 CW*0202 ALPHA CHAIN 87-114 P1C06_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-3 CW*0302 ALPHA CHAIN 87-114 P1C12_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-8 CW*0801 ALPHA CHAIN 87-114 P1C13_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-8 CW*0802 ALPHA CHAIN 87-114 P1C14_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-8 CW*0803 ALPHA CHAIN 87-114 P1C17_HUMAN HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW*1401 ALPHA CHAIN PRECURSOR 87-114 P25A6_HUMAN 69/71 KD (2*-5′) OLIGOADENYLATE SYNTHETASE 593-620 P2AAA_HUMAN PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT, ALPHA ISOFORM 12-49 54-81 P2AAB_HUMAN PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT, BETA ISOFORM 9-36 41-68 79-106 P2ABA_HUMAN PROTEIN PHOSPHATASE PP2A, 55 KD REGULATORY SUBUNIT, ALPHA ISOFORM 177-218 P411_HUMAN ERYTHROID PROTEIN 4.1(BAND 4.1, ERYTHROCYTE FORM). 32-66 P412_HUMAN NON-ERYTHROID PROTEIN 4.1 (BAND 4.1, LYMPHOID FORM). 3-30 708-735 P42_HUMAN ERYTHROCYTE MEMBRANE PROTEIN BAND 4.2. 173-200 518-545 P4F2_HUMAN 4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN (4F2HC)(LYMPHOCYTE ACTIVATION 281-322 P5H1E_HUMAN 5-HYDROXYTRYPTAMINE 1E RECEPTOR (5-HT-1E) (SEROTONIN RECEPTOR) 311-338 P5H1F_HUMAN 5-HYDROXYTRYPTAMINE 1F RECEPTOR (5-HT-1F) (SEROTONIN RECEPTOR). 222-253 P5H2A_HUMAN 5-HYDROXYTRYPTAMINE 2A RECEPTOR (5-HT-2A) (SEROTONIN RECEPTOR) 22-56 P5H7_HUMAN 5-HYDROXYTRYPTAMINE 7 RECEPTOR (5-HT-7) (5-HT-X) (SEROTONIN RECEPTOR). 72-99 PA1AC_HUMAN ALPHA-1-ANTIHYMOTRYPSIN PRECURSOR (ACT). 98-132 330-357 PA1AG_HUMAN ALPHA-1-ACID GLYCOPROTEIN 1 PRECURSOR (OROSOMUCOID) (OMD). 92-119 PA1AT_HUMAN ALPHA-1-ANTITRYPSIN PRECURSOR (ALPHA-1 PROTESE INHIBITOR) (ALPHA-1- 168-202 PA1AU_HUMAN ALPHA-1-ANTITRYPSIN-RELATED PROTEIN PRECURSOR. 163-197 PA2AP_HUMAN ALPHA-2-ANTIPLASMIN PRECURSOR (ALPHA-2-PLASMIN INHIBITOR) (ALPHA-2- 191-218 365-395 PA2GL_HUMAN LEUCINE-RICH ALPHA-2-GLYCOPROTEIN (LRG). 104-134 PA2MG_HUMAN ALPHA-2-MACROGLOBULIN PRECURSOR (ALPHA-2-M). 53-80 319-349 1085-1112 1402-1429 PA4_HUMAN ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN PRECURSOR (PROTEASE NEXIN-II) 428-455 PAACT_HUMAN ALPHA-ACTININ (F-ACTIN CROSS LINKING PROTEIN). 92-119 720-747 PAATM_HUMAN ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR (EC 2.6.1.1) 109-136 PABP2_HUMAN ENDOTHELIAL ACTIN-BINDING PROTEIN (ABP-280) (NONMUSCLE FILAMIN). 61-88 119-147 2604-2633 PAC12_HUMAN ACTIVATOR I 37 KD SUBUNIT (REPLICATION FACTOR C 37 KD SUBUNIT) (A1 306-333 PAC15_HUMAN ACTIVATOR I 140 KD SUBUNIT (REPLICATION FACTOR C LARGE SUBUNIT) (A1 14-51 182-209 668-700 PACDL_HUMAN ACYL-COA DEHYDROGENASE PRECURSOR, LONG-CHAIN SPECIFIC (EC 1.3.99.13) 78-108 179-206 313-340 PACET_HUMAN ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, TESTIS-SPECIFIC (EC 3.4.15.1) 78-115 126-153 676-710 PACE_HUMAN ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, SOMATIC (EC 3.4.15.1) (ACE) 652-689 700-727 1250-1284 PACHA_HUMAN ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN PRECURSOR. 48-80 PACHE_HUMAN ACETYLCHOLINE RECEPTOR PROTEIN, EPSILON CHAIN PRECURSOR. 46-98 PACHG_HUMAN ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN PRECURSOR. 45-79 304-331 PACHP_HUMAN NEURONAL ACETYLCHOLINE RECEPTOR PROTEIN, BETA-4 CHAIN (FRAGMENT). 29-56 70-97 PACRO_HUMAN ACROSIN PRECURSOR (EC 3.4.21.10). 122-149 PACYM_HUMA ACYLPHOSPHATASE, MUSCLE TYPE ISOZYME (EC 3.6.1.7) (ACYLPHOSPHATE 26-53 PADT2_HUMAN ADP,ATP CARRIER PROTEIN, FIBROBLAST ISOFORM (ADP/ATP TRANSLOCASE 2) 162-189 PADT3_HUMAN ADP,ATP CARRIER PROTEIN, LIVER ISOFORM T2 (ADP/ATP TRANSLOCASE 3) 163-190 PAK79_HUMAN A-KINASE ANCHOR RPROTEIN 79 (AKAP 79) (CAMP-DEPENDENT PROTEIN KINASE 197-238 381-414 PALFA_HUMAN FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) A (MUSCLE). 36-63 PALFB_HUMAN FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) B (LIVER). 79-113 PAMD1_HUMAN AMP DEAMINASE 1 (EC 3.5.4.6) (MYOADENYLATE DEAMINASE) (AMP DEAMINASE 59-86 PAMD3_HUMAN AMP DEAMINASE 3 (EC 3.5.4.6) (AMP DEAMINASE ISOFORM E). 49-76 PAMPN_HUMAN AMINOPEPTIDASE N (EC 3.4.11.2) (MICROSOMAL AMINOPEPTIDASE) (GP 150) 492-523 604-648 926-964 PAMPR_HUMAN AMPHIREGULIN PRECURSOR (AR). 213-247 PAMRP_HUMAN ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN PRECURSOR 173-236 263-290 PANFB_HUMAN BRAIN NATRIURETIC PEPTIDE PRECURSOR 36-63 PANK1_HUMAN ANKYRIN R (ANKYRINS 2.1 AND 2.2) (ERYTHROCYTE ANKYRIN). 812-839 1004-1031 1617-1644 PANKB_HUMAN ANKYRIN, BRAIN VARIANT 1 (ANKYRIN B) (ANKYRIN, NONERYTHROID) 1544-1571 PANKC_HUMAN ANKYRIN, BRAIN VARIANT 2 (ANKYRIN B) (ANKYRIN, NONERYTHROID) 1811-1838 PANPA_HUMAN ATRIAL NATRIURETIC PEPTIDE RECEPTOR A PRECURSOR (ANP-A) (ANPRA) (GC-A) 553-580 825-852 PANPB_HUMAN ATRIAL NATRIURETIC PEPTIDE RECEPTOR B PRECURSOR (ANP-B) (ANPRB) (GC-B) 810-837 PANT3_HUMAN ANTITHROMBIN-III PRECURSOR (ATIII). 162-196 PANX2_HUMAN ANNEXIN II (LIPOCORTIN II) (CALPACTIN I HEAVY CHAIN) (CHROMOBINDIN 8) 40-67 306-333 PANX3_HUMAN ANNEXIN III (LIPOCORTIN III) pLACENTAL ANTICOAGULANT PROTEIN III) 215-242 PANX6_HUMAN ANNEXIN VI (LIPOCORTIN VI) (P68) (P70) (PROTEIN III) (CHROMOBINDIN 20) 60-87 626-653 PANX1_HUMAN ANNEXIN, INTESTINE-SPECIVIC (ISA). 37-78 137-164 PAOFA_HUMAN AMINE OXIDASE (FLAVIN-CONTAINING) A (EC 1.4.3.4) MONOAMINE OXIDASE) 16-43 74-104 PAOFB_HUMAN AMINE OXIDASE (FLAVIN-CONTAINING) B (EC 1.4.3.4) MONOAMINE OXIDASE) 68-95 PAPA1_HUMAN APOLIPOPROTEIN A-1 PRECURSOR (APO-A1). 57-84 PAPB_HUMAN APOLIPOPROTEIN B-100 PRECURSOR (APO B-100/APPO B-48). 585-619 1073-1100 1353-1380 1524-1584 2074-2113 2132-2159 2181-2215 2240-2271 2360-2389 2466-2507 2529-2559 2850-3000 3360-3390 3480-3570 3620-3654 4040-4074 4090-4120 4135-4167 4274-4301 4397-4438 4465-4492 4499-4544 PAPC2_HUMAN APOLIPOPROTEIN C-II PRECURSOR (APO-CII). 36-63 PAPC_HUMAN ADENOMATOUS POLYPOSIS COLI PROTEIN (APC PROTEIN). 145-172 617-651 834-861 1795-1822 2172-2212 2575-2609 PAPE_HUMAN APOLIPOPROTEIN E PRECURSOR (APO-E). 48-81 247-274 PAPOA_HUMAN APOLIPOPROTEIN (A) PRECURSOR (EC 3.4.21.*) (APO(A)) (LP(A)). 4448-4475 PAQP1_HUMAN AQUAPORIN-CHIP (WATER CHANNEL PROTEIN FOR RED BLOOD CELLS AND KIDNEY 39-73 PARK1_HUMAN BETA-ADRENERGIC RECEPTOR KINASE 1 (EC 2.7.1.126) (BETA-ARK-1). 523-553 PARLY_HUMAN ARGINIOSUCCINATE LYASE (EC 4.3.2.1) (ARGINOSUCCINASE). 69-103 PARNT_HUMAN ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR (ARNT PROTEIN) (DIO 223-250 PARRC_HUMAN BETA-ARRESTIN 2. 215-242 305-332 PARRS_HUMAN ARRESTIN (RETINAL S-ANTIGEN) (48 KD PROTEIN) (S-AG). 299-352 PARY1_HUMAN ARYLAMINE N-ACETYL TRANSFERASE, MONOMORPHIC (EC 2.3.1.5) (MNAT). 7-34 PARY2_HUMAN ARYLAMINE N-ACETYL TRANSFERASE, POLYMORPHIC (EC 2.3.1.5 (PNAT). 7-34 PASNS_HUMAN ASPARAGINE SYNTHETASE (GLUTAMINE-HYDROLYZING (EC 6.3.5.4) (TS11 CELL 311-338 347-374 PATCD_HUMAN CALCIUM-TRANSPORTING ATPASE SAROCPLASIMC RETICULUM TYPE (EC 3.6.1.38). 163-190 PATCE_HUMAN CALCIUM-TRANSPORTING ATPASE ENDOPLASMIC RETICULUM TYPE (EC 3.6.1.38). 163-190 PATF1_HUMAN TRANSCRIPTION FACTOR ATF-1 (FRAGMENT). 203-230 PATF3_HUMAN TRANSCRIPTION FACTOR ATF-3 (FRAGMENT). 155-183 PATF5_HUMAN TRANSCRIPTION FACTOR ATF-5 (FRAGMENT). 30-61 PATF6_HUMAN TRANSCRIPTION FACTOR ATF-6 (FRAGMENT). 34-68 PATFA_HUMAN TRANSCRIPTION FACTOR ATF-A AND ATF-A-DELTA. 351-394 PATPF_HUMAN ATP SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR 129-163 PB232_HUMAN NUCLEOLAR PHOSPHOPROTEIN B23 (NUCLEOPHOSMIN)(NUMATRIN). 114-141 PB2AR_HUMAN BETA-2-ADRENERGIC RECEPTOR. 292-319 345-372 PB3A2_HUMAN ANION EXCHANGE PROTEIN 2 (NON-ERYTHROID BAND 3-LIKE PROTEIN) (BND3L). 1081-1111 PB94_HUMAN B94 PROTEIN. 115-142 525-562 609-636 PBAN7_HUMAN ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN. 106-140 PBASO_HUMAN BASONUCLIN. 120-147 310-337 773-807 PBC2B_HUMAN TRANSFORMING PROTEIN BCL-2-BETA. 178-205 PBCGF_HUMAN B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD). 33-63 PBCR_HUMAN BREAKPOINT CLUSTER REGION PROTEIN. 784-825 PBGLR_HUMAN BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31). 246-280 504-531 PBMP2_HUMAN BONE MORPHOGENETIC PROTEIN 2 PRECURSOR (BMP-2) (BMP-2A). 216-250 PMBP5_HUMAN BONE MORPHOGENETIC PROTEIN 5 PRECURSOR (BMP-5). 202-229 PBMP6_HUMAN BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (BMP-6). 274-301 PBMP7_HUMAN BONE MORPHOGENETIC PROTEIN 7 PRECURSOR (BMP-7) (OSTEOGENIC PROTEIN 1) 192-219 PBN51_HUMAN BN51 PROTEIN. 284-311 PBP1_HUMAN BACTERICIDAL PERMEABILITY INCREASING PROTEIN PRECURSOR (BPI) (CAP 57). 168-195 PBRS3_HUMAN BOMBESIN RECEPTOR SUBTYPE-3 (BRS-3). 10-37 PBTF2_HUMAN BASIC TRANSCRIPTION FACTOR 62 KD SUBUNIT (P62). 128-162 353-385 PBTG1_HUMAN BTG1 PROTEIN (B-CELL TRANSLOCATION GENE 1 PROTEIN). 26-53 PC1TC_HUMAN C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (METHYLENETETRAHYDROFO 330-363 PC2TA_HUMAN MHC CLASS II TRANSACTIVATOR CIITA. 921-948 PCA19_HUMAN COLLAGEN ALPHA 1 (IX) CHAIN PRECURSOR. 120-150 PCA1B_HUMAN COLLAGEN ALPHA 1 (XI) CHAIN PRECURSOR. 341-368 PCABV_HUMAN CALBINDIN (VITAMIN D-DEPENDENT CALCIUM-BINDING PROTEIN (CABP), AVIAN- 27-54 PCAD5_HUMAN CADHERIN 5 PRECURSOR (7B4 ANTIGEN). 723-750 PCADE_HUMAN EPITHELIAL-CADHERIN PRECURSOR (E-CADHERIN) (UVOMORULIN) (CAM 120/80). 838-865 PCADN_HUMAN NEURAL-CADHERIN PRECURSOR (N-CADHERIN). 95-122 323-350 PCADP_HUMAN PLACENTAL-CADHERIN PRECURSOR (P.CADHERIN). 384-411 580-607 PCAGA_HUMAN CALGRANULIN A (MIGRATION INHIBITORY FACTOR-RELATED PROTEIN 8) (MRP-8) 2-29 PCALR_HUMAN CALCITONIN RECEPTOR PRECURSOR (CT-R). 140-167 PCAMA_HUMA CARTILAGE MATRIX PROTEIN PRECURSOR. 297-324 467-494 PCAP1_HUMAN CALPAIN 1, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17) (CALCIUM-ACTIVATED 561-588 PCAP2_HUMAN CALPAIN 2, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17) (CALCIUM-ACTIVATED 257-284 502-529 PCAP3_HUMAN CALPAIN P94, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17) (CALCIUM- 674-701 PCAPL_HUMAN PLACENTAL CALCIUM-BINDING PROTEIN. 13-40 PCAP_HUMAN ADENYLYL CYCLASE-ASSOCIATED PROTEIN (CAP). 111-138 163-197 321-355 PCART_HUMAN CALRETININ (29 KD CALBINDIN). 217-244 PCASB_HUMAN BETA CASEIN PRECURSOR. 14-48 PCATA_HUMAN CATALASE (EC 1.11.1.6). 442-456 PCATD_HUMAN CATHEPSIN D PRECURSOR (EC 3.4.23.5). 253-282 PCATH_HUMAN CATHEPSIN H PRECURSOR (EC 3.4.22.16). 41-68 PCATL_HUMAN CATHEPSIN L₁PRECURSOR (EC 3.4.22.15) (MAJOR EXCRETED PROTEIN) (MEP). 278-305 PCATS_HUMAN CATHEPSIN S PRECURSOR (EC 3.4.22.27). 30-57 142-169 PCBFB_HUMAN CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT B (CBF-B) (NY-Y PROTEIN 24-58 138-165 PCBG_HUMAN CORTICOSTEROID-BINDING GLOBULIN PRECURSOR (CBG) (TRANSCORTIN). 88-122 PCBPB_HUMAN CARBOXYPEPTIDASE B PRECURSOR (EC 3.4.17.2) (PANCREAS-SPECIFIC PROTEIN) 69-129 278-305 319-346 PCBPH_HUMAN CARBOXYPEPTIDASE H PRECURSOR (EC 3.4.17.10) (CARBOXYPEPTIDASE E) (CPE) 355-382 PCC21_HUMAN CDC21 HOMOLOG (P1-CDC21) (FRAGMENT). 35-62 PCC27_HUMAN PROTEIN CDC27H5. 209-240 PCCG1_HUMAN TRANSCRIPTION INITIATION FACTOR TFIID 250 KD SUBUNIT (TBP-ASSOCIATED- 1298-1342 PCD14_HUMAN MONOCYTE DIFFERENTIATION ANTIGEN CD14 PRECURSOR (MYELOID CELL-SPECIF 142-169 PCDIA_HUMAN T-CELL SURFACE GLYCOPROTEIN CDIA PRECURSOR (CDIA ANTIGEN) (T-CELL. 32-63 281-308 PCDIE_HUMAN T-CELL SURFACE GLYCOPROTEIN CDIE PRECURSOR (CDIE ANTIGEN) (R2GI). 77-104 PCD20_HUMAN B-LYMPHOCYTE ANTIGEN CD20 (B-LYMPHOCYTE SURFACE ANTIGEN B1) (LEU-16) 226-255 PCD2R_HUMAN CD20 RECEPTOR PRECURSOR 226-255 PCD2_HUMAN T-CELL SURFACE ANTIGEN CD2 PRECURSOR (T-CELL SURFACE ANTIGIN 88-119 PCD34_HUMAN HEMOPOIETIC PROGENITOR CELL ANTIGEN CD34 PRECURSOR. 74-108 PCD37_HUMAN LEUKOCYTE ANTIGEN CD37 101-128 PCD3G_HUMAN T-CELL SURFACE GLYCOPROTEIN CD3 GAMMA CHAIN PRECURSOR (T-CELL RECEPT 7-34 PCD3L_HUMAN CD30 LIGAND (CD30-L). 96-130 183-217 PCD4X_HUMAN CD44 ANTIGEN, EPITHELIAL FORM PRECURSOR (CD44E) (PHAGOCYTIC 328-355 PCD4_HUMAN T-CELL SURFACE GLYCOPROTEIN CD4 PRECURSOR (T-CELL SURFACE ANTIGEN 44-71 240-267 PCD53_HUMAN LEUKOCYTE SURFACE ANTIGEN CD53. 87-114 PCD72_HUMAN B-CELL DIFFERENTIATION ANTIGEN CD72 (LYB-2). 118-177 PCDK3_HUMAN CELL DIVISION PROTEIN KINASE 3 (EC 2.7.1.-). 5-32 PCDK5_HUMAN CELL DIVISION PROTEIN KINASE 5 (EC 2.7.1.-) (KINASE PSSALRE). 5-32 PCEBB_HUMAN CCAAT/ENHANCER BINDING PROTEIN BETA (C/EBP BETA) (NUCLEAR FACTOR 296-330 PCENB_HUMAN MAJOR CENTROMERE AUTOANTIGEN B (CENTROMERE PROTEIN B) (CENP-B). 568-595 PCENC_HUMAN CENTROMERE PROTEIN C (CENP-C) (CENTROMERE AUTOANTIGEN C). 433-460 PCENE_HUMAN CENTROMERIC PROTEIN E (CENP-E PROTEIN). 372-399 493-520 553-607 715-752 767-825 850-884 903-947 963-995 1080-1107 1122-1149 1179-1239 1250-1277 1340-1367 1440-1481 1486-1556 1646-1680 1684-1724 1808-1846 1852-1883 1890-1917 1940-1988 2021-2048 2288-2318 2440-2478 2498-2563 PCERU_HUMAN CERULOPLASMIN PRECURSOR (EC 1.16.3.1) (FERROXIDASE). 913-940 PCETP_HUMAN CHOLESTERYL ESTER TRANSFER PROTEIN PRECURSOR. 71-108 PCFTR_HUMAN CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR (CFTR). 158-189 802-829 895-922 1243-1270 PCGCC_HUMAN CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC NUCLEOTIDE 216-243 PCGL_HUMAN CYSTATHIONINE GAMMA-LYASE (EC 4.4.1.1). 315-349 PCHLR_HUMAN CHLORDECONE REDUCTASE (EC 1.1.1.225) (CDR). 17-51 PCHOL_HUMAN CHOROIDERAEMIA-LIKE PROTEIN. 56-97 230-257 451-478 PCHOR_HUMAN CHOROIDERAEMIA PROTEIN (TCD PROTEIN). 112-139 PCINA_HUMAN SODIUM CHANNEL PROTEIN, CARDIAC AND SKELETAL MUSCLE ALPHA-SUBUNIT. 787-814 943-970 PCLCA_HUMAN CLATHRIN LIGHT CHAIN A (BRAIN AND LYMPHOCYTE LCA). 121-148 PCLCB_HUMAN CLATHRIN LIGHT CHAIN B (BRAIN AND LYMPHOCYTE LCB). 123-157 PCLCY_HUMAN CALCYCLIN (PROLACTIN RECEPTOR ASSOCIATED PROTEIN) (PRA) (GROWTH 9-50 PCLUS_HUMAN CLUSTERIN PRECURSOR (COMPLEMENT-ASSOCIATED PROTEIN SP-40,40) 36-98 323-350 367-394 PCMGA_HUMA CHROMOGRANIN A PRECURSOR (CGA) (CONTAINS: PANCREASTATIN AND WE-14) 93-120 430-457 PCNTF_HUMAN CILIARY NEUROTROPHIC FACTOR (CNTF). 66-93 PCO02_HUMAN TUMOR-ASSOCIATED ANTIGEN CO-029. 29-56 93-148 PCO3_HUMAN COMPLEMENT C3 PRECURSOR. 242-276 593-620 837-867 PCO4_HUMAN COMPLEMENT C4 PRECURSOR. 1292-1319 PCO5_HUMAN COMPLEMENT C5 PRECURSOR. 298-342 537-564 970-997 1270-1304 PCO6_HUMAN COMPLEMENT C6 PRECURSOR. 367-398 PCO7_HUMAN COMPLEMENT C7 PRECURSOR. 225-261 PCOX1_HUMAN CYTOCHROME C OXIDASE POLYPEPTIDE I (EC 1.9.3.1). 353-380 PCP70_HUMAN CYTOCHROME P450 VII (CHOLESTEROL 7-ALPHA-MONOOXYGENASE) 263-290 346-373 PCPCH_HUMAN CYTOCHROME P450 IIC17 (EC 1.14.14.1) (P450-254C) (FRAGMENT). 109-136 PCPE1_HUMAN CYTOCHROME P450 IIE1 (EC 1.14.14.1) (P450-J) (ETHANOL INDUCIBLE). 231-258 PCPSM_HUMAN CARBAMOYL-PHOSPHATE SYNTHASE (AMMONIA) MITOCHONDRIAL PRECURSOR 112-146 420-447 PCPT2_HUMAN MITACHONDRIAL CARNITINE PALMITOYLTRANSFERASE II PRECURSOR 410-437 PCPT7_HUMAN CYTOCHROME P450 XVIIA1 (P450-C17) (EC 1.14.99.9) (STEROID 17-ALPHA- 226-257 PCPV1_HUMAN CYTOCHROME P450 XIXA1 (AROMATASE) (EC 1.14.14.1) (ESTROGEN 234-271 PCR2_HUMAN COMPLEMENT RECEPTOR TYOE 2 PRECURSOR (CR2) (COMPLEMENT C3D RECEPTOR) 986-1013 PCRCM_HUMAN COLORECTAL MUTANT CANCER PROTEIN (MCC PROTEIN). 68-126 379-420 633-678 724-754 763-790 PCREB_HUMAN CAMP RESPONSE ELEMENT BINDING PROTEINS A AND B (CREB-A AND CREB-B). 94-125 PCREP_HUMAN CAMP RESPONSE ELEMENT BINDING PROTEINS CRE-BP1. 380-414 PCRP_HUMAN C-REACTIVE ROTEIN PRECURSOR. 60-87 150-177 PCS1_HUMAN CLEAVAGE SIGNAL-1 PROTEIN (CS-1). 203-233 PCSF1_HUMAN MACROPHAGE COLONY STIMULATING FACTOR-1 PRECURSOR (CSF-1) (MCSF). 143-170 PCST3_HUMAN CLEAVAGE STIMULATION FACTOR, 50 KD SUBUNIT (CSTF 50 KD SUBUNIT) (CF-1 6-33 PCTNA_HUMAN ALPHA-CATENIN (CADHERIN-ASSOCIATED PROTEIN). 681-718 PCTNR_HUMAN ALPHA-CATENIN RELATED PROTEIN (CATENIN ALPHA-2). 680-717 PCX26_HUMAN GAP JUNCTION BETA-2 PROTEIN (CONNEXIN 26) (CX26). 108-139 PCX32_HUMAN GAP JUNCTION BETA-1 PROTEIN (CONNEXIN 32) (CX32) (GAP JUNCTION 28 KD 117-144 PCX37_HUMAN GAP JUNCTION ALPHA-4 PROTEIN (CONNEXIN 37) (CX37). 88-115 PCYB5_HUMAN CYTOCHROME B5. 3-42 PCYG1_HUMAN GUANYLATE CYCLASE SOLUBLE, BETA-1 CHAIN (EC 4.6.1.2) (70 KD CHAIN) 80-107 126-153 352-396 PCYG4_HUMAN GUANYLATE CYCLASE SOLUBLE, ALPHA-2 CHAIN (EC 4.6.1.2). 106-133 PCYGR_HUMAN RETINAL GUANYLYL CYCLASE PRECURSOR (EC 4.6.1.2). 824-851 PCYRG_HUMAN CYTOKINE RECEPTOR COMMON GAMMA CHAIN PRECURSOR (GAMMA-C) 293-320 PCYTA_HUMAN CYSTATIN A (STEFIN A) (CYSTATIN AS). 27-58 PDBL_HUMAN PROTO-ONCOGENE DBL PRECURSOR (CONTAINS: MCF2). 233-283 485-524 766-793 801-845 PDESM_HUMAN DESMIN. 153-180 272-312 PDESP_HUMAN DESMOPLAKIN I AND II (DPI ANDDPII) (FRAGMENT). 31-79 113-143 217-244 269-317 382-434 437-467 528-558 563-598 630-674 697-734 738-789 1456-1493 1508-1535 PDHAP_HUMAN ALDEHYDE DEHYDROGENASE, DIMERIC NADP-PREFERRING (EC 1.2.1.5) 31-58 PDMD_HUMAN DYSTROPHIN. 86-116 338-365 484-511 753-780 976-1003 1012-1039 1201-1228 1364-1394 1615-1674 1838-1865 2158-2185 2313-2343 2752-2779 2786-2830 2912-2958 3014-3041 3499-3533 PDNJI_HUMAN DNAJ PROTEIN HOMOLOG. 45-76 PDNLI_HUMAN DNA LIGASE I (EC 6.5.1.1) (POLYDEOXYRIBONUCLEOTIDE SYNTHASE (ATP)). 130-157 355-392 732-759 PDPOA_HUMAN DNA POLYMERASE ALPHA (EC 2.7.7.7). 25-74 1009-1057 1100-1127 PDPOD_HUMAN DNA POLYMERASE DELTA CATALYTIC CHAIN (EC 2.7.7.7). 729-756 PDPP4_HUMAN DIPEPTIDYL PEPTIDASE IV (EC 3.4.14.5) (DPP IV) (T-CELL ACTIVATION 29-77 114-148 PDRN1_HUMAN DEOXYRIBONUCLEASE I PRECURSOR (EC 3.1.21.1) (DNASE I). 44-71 PDSC2_HUMAN DESMOCOLLIN 3A/3B PRECURSOR (DESMOSOMAL GLYCOPROTEIN II AND III). 80-107 355-398 PDSG1_HUMAN DESMOGLEIN 1 PRECURSOR (DESMOSOMAL GLYCOPROTEIN 1) (DG1). 15-42 271-298 497-531 PDSG3_HUMAN DESMOGLEIN 3 PRECURSOR (130 KD PEMPHIGUS VULGARIS ANTIGEN) (PVA). 211-248 325-352 PDUG_HUMAN DIVERGENT UPSTREAM PROTEIN (DUP). 584-618 PEAR1_HUMAN V-ERBA RELATED PROTEIN EAR-1. 523-550 PEB12_HUMAN EBV-INDUCED G PROTEIN-COUPLED RECEPTOR 2 (EB12). 44-78 PEF1B_HUMAN ELONGATION FACTOR 1-BETA (EF-1-BETA). 105-132 PEF1D_HUMAN ELONGATION FACTOR 1-DELTA (EF-1-DELTA). 84-118 PEGFR_HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR PRECURSOR (EC 2.7.1.112). 64-91 440-467 PEGF_HUMAN EPIDERMAL GROWTH FACTOR PRECURSOR, KIDNEY (EGF) (UROGASTRONE). 47-74 PELF1_HUMAN ETS-RELATED TRANSCRIPTION FACTOR ELF-1. 551-588 PENPL_HUMAN ENDOPLASMIN PRECURSOR (94 KD GLUCOSE-REGULATED PROTEIN) (GRP94) (GP96 47-74 246-273 PENV1_HUMAN RETROVIRUS-RELATED ENV POLYPROTEIN. 382-420 PEPC_HUMAN IG EPSILON CHAIN REGION. 161-188 PEMPO_HUMAN EPIMORPHIN. 35-62 67-94 249-283 PER72_HUMAN PROTEIN DISULFIDE ISOMERASE-RELATED PROTEIN PRECURSOR (ERP72). 58-85 142-169 458-485 PERC1_HUMAN DNA EXCISION REPAIR PROTEIN ERCC-1. 240-270 PERC6_HUMAN EXCISION REPAIR PROTEIN ERCC-6. 160-209 939-973 PESTR_HUMAN ESTROGEN RECEPTOR (ER). 451-488 PET2_HUMAN ENDOTHELIN-2 PRECURSOR (ET-2). 133-160 PET3_HUMAN ENDOTHELIN-3 PRECURSOR (ET-3). 182-209 PEV2A_HUMAN EV12A PROTEIN PRECURSOR. 29-56 PEZRI_HUMAN EZRIN (P81) (CYTOVILLIN) (VILLIN-2). 119-146 351-392 402-429 512-539 PFA5_HUMAN COAGULATION FACTOR V PRECURSOR. 2103-2137 PFA8_HUMAN COAGULATION FACTOR VIII PRECURSOR (PROCOAGULANT COMPONENT). 871-908 1007-1034 1194-1230 PFA9_HUMAN COAGULATION FACTOR IX PRECURSOR (ec 3.4.21.22) (CHRISTMAS FACTOR 271-298 PFAB1_HUMAN FATTY ACID-BINDING PROTEIN, INTESTINAL. 98-125 PFASA_HUMAN APOPTOSIS-MEDIATING SURFACE ANTIGEN FAS PRECURSOR (APO-1 ANTIGEN). 23-50 249-301 306-333 PFCE2_HUMAN LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR (LYMPHOCYTE IGE 81-115 PFCEA_HUMAN HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-SUBUNIT (FCERI) 140-174 PFGR2_HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 2 RECURSOR (EC 2.7.1.122). 310-337 PFIBA_HUMAN FIBRINOGEN ALPHA CHAIN PRECURSOR. 131-165 427-457 PFIBB_HUMAN FIBRINOGEN BETA CHAIN PRECURSOR. 149-186 PFIBG_HUMAN FIBRINOGEN GAMMA-A CHAIN PRECURSOR. 59-93 125-160 PFIBH_HUMAN FIBRINOGEN GAMMA-B CHAIN (FIBRINOGEN GAMMA′). 59-93 125-160 PFINC_HUMAN FIBRONECTIN PRECURSOR. 2168-2199 PFLII_HUMAN LFI-1 ONCOGENE (ERGB TRANSCRIPTION FACTOR). 172-209 PFMO3_HUMAN DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 3 (EC 1.14.13.8) 184-218 256-283 301-328 PFOS_HUMAN P55-C-FOS PRONTO-ONCOGENE PROTEIN. 162-193 PFRA1_HUMAN FOS-RELATED ANTIGEN 1. 133-168 PFRA2_HUMAN FOS-RELATED ANTIGEN 2. 149-180 PFRIH_HUMAN FERRITIN HEAVY CHAIN. 7-34 PFRIL_HUMAN FERRITIN LIGHT CHAIN. 3-33 PFSHR_HUMAN FOLLICLE STIMULATING HORMONE RECEPTOR PRECURSOR (FSH-R). 364-395 PFUCO_HUMAN TISSUE ALPHA-L-FUCOSIDASE PRECURSOR (EC 3.2.1.51) (ALPHA-L-FUCOSIDASE 308-335 PFUMH_HUMAN FUMARATE HYDRATASE, MITOCHONDRIAL (EC 4.2.1.2) (FUMARASE). 424-451 PG0S2_HUMAN PUTATIVE LYMPHOCYTE G0/G1 SWITCH PROTEIN. 56-83 PG19P_HUMAN PROTEIN KINASE C SUBSTRATE, 80 KD PROTEIN, HEAVY CHAIN (PKCSH) 146-173 PG6P1_HUMAN GLUCOSE-6-PHOSPHATE ISOMERASE (GPI) (EC 5.3.1.9) (PHOSPHOGLUCOSE) 16-50 PG732_HUMAN MAJOR GASTROINTESTINAL TUMOR-ASSOCIATED PROTEIN GA733-2 PRECURSOR 181-215 PGA12_HUMAN GALACTOKINASE 2 (EC 2.7.1.6.). 254-281 PGAA1_HUMAN GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-1 SUBUNIT PRECURSOR (GABA(A) 210-237 PGAA3_HUMAN GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-3 SUBUNIT PRECURSOR (GABA(A) 211-255 PGASR_HUMAN GASTRIN/CHOLECYSTOKININ TYPE B RECEPTOR (CCK-6 RECEPTOR). 75-105 PGB01_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA SUBUNIT 1. 22-49 PGB02_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA SUBUNIT 2. 22-49 PGBAK_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(K), ALPHA SUBUNIT (G(I) ALPHA-3). 22-49 PGBAS_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(S), ALPHA SUBUNIT (ADEBYLATE 7-34 PGBAY_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(Y), ALPHA SUBUNIT (ALPHA-11). 95-122 PGBB3_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 3 65-92 PGBLP_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN 12.3. 110-137 255-282 289-316 PGBP2_HUMAN INTERFERON-INDRCED GUANYLATE-BINDING PROTEIN 2 (GUANINE NUCLEOTIDE- 454-488 PGBT2_HUMAN GUANINE NUCLEOTIDE-BINDING PROTEIN G(T), ALPHA-2 SUBUNIT TRANSDUCIN 22-49 PGCF_HUMAN GC-RICH SEQUENCE DNA-BINDING FACTOR (GCF) (TRANSCRIPTION FACTOR 9) 200-227 293-320 367-394 396-423 647-674 PGCHI_HUMAN GTP CYCLOHDOLASE 1 (EC 3.5.4.16). 165-192 PGCRA_HUMAN GLUCOCORTICOID RECEPTOR, ALPHA (GR). 167-194 PGCRB_HUMAN GLUCOCORTICOID RECEPTOR, BETA (GR). 167-194 PGCSP_HUMAN GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (EC 1.4.4.2) 460-487 PGDN_HUMAN GLIA DERIVED NEXIN (GDN)(PROTEASE NEXIN I). 83-110 PGELS_HUMAN GELSOLIN PRECURSOR, PLASMA (ACTIN-DEPOLYMERIZING FACTOR) (ADF) 701-728 PGFAP_HUMAN GLIAL FIBRILLARY ACIDIC PROTEIN, ASTROCYTE. 189-216 349-376 384-411 PGL65_HUMAN N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR (EC 3.1.6.14) (G6S) 170-221 PGLPK_HUMAN GLYCEROL KINASE (EC 2.7.1.30) (ATP:GLYCEROL 3-PHOSPHOTRANSFERASE) 78-112 251-278 PGLY1_HUMAN SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC (EC 2.1.2.1) (SERINE 32-59 344-371 PGLY2_HUMAN SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL (EC 2.1.2.1) (SERINE 417-444 PGR78_HUMAN 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN 564-591 598-625 PGRA2_HUMAN GLYCINE RECEPTOR ALPHA-2 CHAIN PRECURSOR. 142-169 341-368 PGRAV_HUMAN GRAVIN (FRAGMENT). 9-43 61-88 PGRFR_HUMAN GROWTH HORMONE-RELEASING HORMONE RECEPTOR PRECURSOR (GHRH RECEPT 128-155 PGTH2_HUMAN GLUTATHIONE S-TRANSFERASE HA SUBUNIT 2 (EC 2.5.1.18) (GTH2) (CLASS- 64-91 PGTPA_HUMAN GTPASE-ACTIVATING PROTEIN (GAP) (RAS P21 PROTEIN ACTIVATOR). 474-501 1012-1047 PGTR1_HUMAN GLUCOSE TRANSPORTER TYPE 1, ERYTHROCYTE/BRAIN. 274-301 PGTR3_HUMAN GLUCOSE TRANSPORTER TYPE 3, BRAIN. 272-299 PGTR4_HUMAN GLUCOSE TRANSPORTER TYPE 4, INSULIN-RESPONSIVE. 290-317 PH10_HUMAN HISTONE H1′. 44-89 PH1A_HUMAN HISTONE H1A (H1.1). 73-104 PH1B_HUMAN HISTONE H1B (H1.4). 70-101 PH1C_HUMAN HISTONE H1C (H1.3). 72-102 PH1D_HUMAN HISTONE H1D (H1.2). 70-101 PH1T_HUMAN HISTONE H1T. 74-105 PH2B0_HUMAN HISTONE H2B.1. 20-47 PH2B2_HUMAN HISTONE H2B.2. 20-47 PH2B_HUMAN HISTONE H2B (H2B.1 A). 20-47 PHA25_HUMAN HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(5) ALPHA CHAIN PRECURSOR 142-169 PHB2K_HUMAN HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-W53 BETA CHAIN PRECURSOR. 56-83 PHB2P_HUMAN HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W4) BETA CHAIN PRECURSOR. 50-77 PHB2Q_HUMAN HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W2) BETA CHAIN PRECURSOR. 50-77 PHB2S_HUMAN HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, SB BETA CHAIN (FRAGMENT). 16-42 PHEG1_HUMAN HEPARIN-BINDING GROWTH FACTOR PRECURSOR 1 (HBGF-1) (ACIDIC FIBROBLAST 102-129 PHBG3_HUMAN INT-2 PROTO-ONCOGENE PROTEIN PRECURSOR (HBGF-3). 61-91 PHBG6_HUMAN FIBROBLAST GROWTH FACTOR-6PRECURSOR (FGF-6) (HBGF-6) (HST-2). 41-75 159-186 PHB1_HUMAN P59 PROTEIN (HSP BINDING IMMUNOPHILIN) (HBI) (POSSIBLE PEPTIDYL-PROLYL 264-312 PHEM4_HUMAN UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75) (UROPORPHYRINOGEN-III 74-118 PHEP2_HUMAN HEPARIN COFACTOR II PRECURSOR (HC-II) (PROTEASE INHIBITOR LEUSERPIN 2) 169-196 PHEPS_HUMAN SERINE PROTEASE HEPSIN (EC 3.4.21.-). 22-49 PHEXA_HUMAN BETA-HEXOSAMINIDASE ALPHA CHAIN PRECURSOR (EC 3.2.1.52) (N-ACETYL- 356-383 PHEXB_HUMAN BETA-HEXOSAMINIDASE BETA CHAIN PRECURSOR (EC 3.2.1.52) (N-ACETYL-BETA- 388-415 PHMX1_HUMAN HOMEOBOX PROTEIN MSX-1 (HOX-7). 178-212 PHNFA_HUMAN HEPATOCYTE NUCLEAR FACTOR 1-ALPHA (HNF-1A) (LIVER SPECIFIC 2-29 PHO1_HUMAN HEME OXYGENASE 1 (EC 1.14.99.3) (HO-1). 197-224 PHPPD_HUMAN 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (EC 1.13.11.27) (4HPPD). 306-333 PHRX_HUMAN ZINC FINGER PROTEIN HRX. 521-548 914-974 637-1666 2215-2286 2289-2316 3317-3344 3448-3475 PHS1_HUMAN HEMATOPOIETIC LINEAGE CELL SPECIFIC PROTEIN. 43-70 PHS9A_HUMAN HEAT SHOCK PROTEIN HSP 90-ALPHA (HSP 86). 443-470 640-674 PHSER_HUMAN HEAT-STABLE ENTEROTOXIN RECEPTOR PRECURSOR (GC-C) (INTESTINAL 511-545 PHSF1_HUMAN HEAT SHOCK FACTOR PROTEIN 1 (HSF 1) (HEAT SHOCK TRANSCRIPTION FACTOR 113-140 168-209 PHSF2_HUMAN HEAT SHOCK FACTOR PROTEIN 2 (HSF 2) (HEAT SHOCK TRANSCRIPTION FACTOR 117-198 PHV21_HUMAN IG HEAVY CHAIN PRECURSOR V-II REGION (ARH-77). 67-108 PHV3T_HUMAN IG HEAVY CHAIN V-III REGION (GAL). 47-74 PHX11_HUMAN HOMEOBOX PROTEIN HOX-11 (TCL-3 PROTO-ONCOGENE). 262-289 PHXB7_HUMAN HOMEOBOX PROTEIN HOX-B7 (HOX-2C) (HHO.C1). 135-162 PIAPP_HUMAN ISLET AMYLOID POLYPEPTIDE 53-80 PIBP3_HUMAN INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 3 PRECURSOR (IGFBP-3) 183-210 PIC1_HUMAN PLASMA PROTEASE C1 INHIBITOR PRECURSOR (C1 INH). 251-278 PICA2_HUMAN INTERCELLULAR ADHESION MOLECULE-2 PRECURSOR (ICAM-2). 57-84 PIDE_HUMAN INSULIN-DEGRADING ENZYME (EC 3.4.99.45) (INSULINASE) (INSULIN 474-504 907-941 PIF41_HUMAN EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1). 232-259 322-349 PIF4B_HUMAN INTRINSIC FACTOR PRECURSOR (IF) (GASTRIC INTRINSIC FACTOR). 149-176 406-433 PIF_HUMAN INHIBIN BETA A CHAIN PRECURSOR (ACTIVIN BETA-A CHAIN) (ERYTHROID 308-349 PIHBA_HUMAN INTERLEUKIN-1 ALPHA PRECURSOR (IL-1 ALPHA) (HEMATOPOIETIN-1). 80-107 183-210 PIL1A_HUMAN INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-IR1) (P80). 76-110 172-199 PILIR_HUMAN INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-IR1) (P80). 437-467 PILIS_HUMAN INTERLEUKIN-1 RECEPTOR, TYPE II PRECURSOR (IL-IR2). 159-186 PIL5R_HUMAN INTERLEUKIN-5 RECEPTOR ALPHA CHAIN PRECURSOR (IL-5R-ALPHA). 87-114 PIL6_HUMAN INTERLEUKIN-6 PRECURSOR (IL-6) (B-CELL STIMULATORY FACTOR 2) (BSF-2) 112-139 PINI_HUMAN INTERFERON ALPHA-PRECURSOR. 94-121 PINAR_HUMAN INTERFERON ALPHA-RECEPTOR PRECURSOR (IFN-ALPHA-REC). 90-117 164-191 300-327 508-535 PINB_HUMAN INTERFERON BETA PRECURSOR (FIBROBLAST). 88-129 PINI1_HUMAN INTERFERON-INDUCED 17 KD PROTEIN (CONTAINS: INTERFERON-INDUCED 15 KD 83-121 PINI6_HUMAN INTERFERON-INDUCED 56 KD PROTEIN (IFI-56K). 51-58 216-245 393-430 PINSR_HUMAN INSULIN RECEPTOR PRECRSOR (EC 2.7.1.112) (IR). 592-619 PINVO_HUMAN INVOLUCRIN. 119-146 229-273 326-363 386-450 PIP3K_HUMAN ID-MYO-INOSITOL-TRISPHOSPHATE 3-KINASE A (EC 2.7.1.127) (INOSITOL 121-162 PIPSP_HUMAN PLASMA SERINE PROTEASE (PROTEIN C) INHIBITOR PRECURSOR (PCI) 90-117 206-233 PIRBP_HUMAN INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN PRECURSOR (IRBP) 670-697 PIRF_HUMAN INTERFERON REGULATORY FACTOR 2 (IRF-2). 157-193 PIT5P_HUMAN 75 KD INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE PRECURSOR 235-262 PITA2_HUMAN PLATELET MEMBRANE GLYCOPROTEIN IA PRECURSOR (GPIA) (COLLAGEN RECEPTO 579-606 900-927 PITA5_HUMAN FIBRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR (INTEGRIN ALPHA-F) 250-284 657-695 765-792 PITA6_HUMAN INTEGRIN ALPHA-6 PRECURSOR (VLA-6) (INTEGRIN ALPHA-E) (CD49F). 884-911 944-974 PITAL_HUMAN LEUKOCYTE ADHESION GLYCOPROTEIN LFA-I ALPHA CHAIN PRECURSOR (LEUKOC 256-283 310-34 795-822 PITAM_HUMAN CELL SURFACE GLYCOPROTEIN MAC-1 ALPHA SUBUNIT PRECURSOR (CR-3 ALPHA 1044-1078 PITAV_HUMAN VITRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR (INTEGRIN ALPHA-V) 230-264 PITB1_HUMAN FIBRONECTIN RECEPTOR BETA SUBUNIT PRECURSOR (INTEGRIN BETA-1) (CD29) 218-245 354-399 PITB2_HUMAN CELL SURFACE ADHESION GLYCOPROTEINS LFA-1, CR3 AND P150, 95, BETA- 339-366 705-732 PITB3_HUMAN PLATELET MEMBRANE GLYCOPROTEIN IIIA PRECURSOR (GPIIIA) (INTEGRIN BETA- 324-351 PITB4_HUMAN INTEGRIN BETA-4 SUBUNIT PRECURSOR (GP 150). 342-369 PITB5_HUMAN INTEGRIN BETA-5 SUBUNIT PRECURSOR. 724-751 PITB6_HUMAN INTEGRIN BETA-6 SUBUNIT PRECURSOR. 311-338 352-393 PITB8_HUMAN INTEGRIN BETA-8 SUBUNIT PRECURSOR. 362-399 696-737 PIT12_HUMAN INTER-ALPHA-TRYPSIN INHIBITOR COMPLEX COMPONENT II PRECURSOR. 134-161 425-452 772-818 PK1CJ_HUMAN KERATIN, TYPE I CYTOSKELETAL 10 (CYTOKERATIN 10) (K10). 154-187 196-227 337-399 428-462 PK1CM_HUMAN KERATIN, TYPE I CYTOSKELETAL 13 (CYTOKERATIN 13) (K13). 112-142 PK1CN_HUMAN KERATIN, TYPE I CYTOSKELETAL 14 (CYTORERATIN 14) (K14). 122-152 306-335 393-424 PK1CO_HUMAN KERATIN, TYPE I CYTOSKELETAL 15 (CYTOKERATIN 15) (K15). 113-143 PK1CP_HUMAN KERATIN, TYPE I CYTOSKELETAL 16 (CYTOKERATIN 16) (K16). 308-339 PK1CQ_HUMAN KERATIN, TYPE I CYTOSKELETAL 17 (CYTORERATIN 17) (K17). 122-152 302-346 393-431 PK1CR_HUMAN KERATIN, TYPE I CYTOSKELETAL 18 (CYTORERATIN 18) (K18). 87-114 251-298 337-385 PK1CS_HUMAN KERATIN, TYPE I CYTOSKELETAL 19 (CYTOKERATIN 19) (K19). 88-118 317-362 370-397 PK2C1_HUMAN KERATIN, TYPE I CYTOSKELETAL 1 (CYTOKERATIN 1) (K1) (CYTOSKELETAL 67 196-226 346-384 390-467 PK2C2_HUMAN KERATIN, TYPE II CYTOSKELETAL 65 KD. 215-248 364-405 461-488 PK2C4_HUMAN KERATIN, TYPE II CYTOSKELETAL 4 (CYTOKERATIN 4) (K4) (FRAGMENT). 42-73 126-153 189-248 PK2C5_HUMAN KERATIN, TYPE II CYTOSKELETAL 5 (CYTOKERATIN 5) (K5) (58 KD 185-246 332-373 PK2C6_HUMAN KERATIN, TYPE II CYTOSKELETAL 6 (CYTOKERATIN 6) (K6B KERATIN). 178-239 325-366 422-449 PK2C8_HUMAN KERATIN, TYPE II CYTOSKELETAL 8 (CYTOKERATIN 8) (K8). 140-167 PK2CA_HUMAN KERATIN, TYPE II CYTOSKELETAL 56 KD (K6A KERATIN) (FRAGMENT). 7-34 120-161 217-244 PK6PF_HUMAN 6-PHOSPHOFRUCTOKINASE, MUSCLE TYPE (EC 2.7.1.11) (PHOSPHOFRUCTOKINASE 140-167 PK6PL_HUMAN 6-PHOSPHOFRUCTOKINASE, LIVER TYPE (EC 2.7.1.11) (PHOSPHOPRUCTOKINASE 49-80 128-159 PKABL_HUMAN PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL (EC 2.7.1.112) (P150) 498-525 PKAC_HUMAN IG KAPPA CHAIN C REGION. 37-85 PKALM_HUMAN KALLMANN SYNDROME PROTEIN PRECURSOR (ADHESION MOLECULE-LIKE X-LINK 380-414 PKAP0_HUMAN CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN 179-206 PKAP1_HUMAN CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN 177-204 PKAP2_HUMAN CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY CHAIN 175-202 290-317 PKBF1_HUMAN NUCLEAR FACTOR KAPPA-B SUBUNIT-1 (NF-KAPPA-B P105 SUBUNIT) 529-570 PKCRB_HUMAN CREATINE KINASE, B CHAIN (EC 2.7.3.2). 301-328 PKECK_HUMAN TYROSINE PROTEIN-KINASE ECK PRECURSOR (EC 2.7.1.112) (EPITHELIAL CELL 466-493 PKFER_HUMAN PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FER (EC 2.7.1.112) (P94-FER) 219-246 564-591 PKFES_HUMAN PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FES/FPS (EC 2.7.1.112) (C-FES). 101-145 295-322 PKFLT_HUMAN RECEPTOR-RELATED TYROSINE KINASE FLT PRECURSOR (EC 2.7.1.112). 208-235 319-353 PKFMS_HUMAN MACROPHAGE COLONY STIMULATING FACTOR 1 RECEPTOR PRECURSOR (CSF-1-R) 293-320 PKFYN_HUMAN PROTO-ONCOGENE TYROSINE KINASE FLT PRECURSOR (EC 2.7.1.112) (P59-FYN) 199-233 PKGPB_HUMAN CGMP-DEPENDENT PROTEIN KINASE, BETA ISOZYME (CGK) (EC 2.7.1.137). 17-54 PKHEK_HUMAN TYROSINE KINASE HEK RECEPTOR PRECURSOR (EC 2.1.7.112). 646-673 PKINH_HUMAN KINESIN HEAVY CHAIN. 125-155 425-452 471-542 633-680 689-716 872-899 PKKIT_HUMAN KIT PROTO-ONCOGENE TYROSINE KINASE PRECURSOR (EC 2.7.1.112). 235-263 PKMET_HUMAN HEPATOCYTE GROWTH FACTOR RECEPTOR PRECURSOR (MET PROTO-ONCOGENE 898-925 PKNH_HUMAN KININOGEN, HMW PRECURSOR (ALPHA-2-THIOL PROTEINASE INHIBITOR) 505-532 PKP58_HUMAN GALACTOSYLTRANSFERASE ASSOCIATED PROTEIN KINASE P58/GTA (EC 2.7.1.-) 81-108 PKP68_HUMAN INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN KINASE 149-179 191-225 285-312 PKP78_HUMAN PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 (EC 2.7.1.-). 582-609 PKPCL_HUMAN PROTEIN KINASE C, ETA TYPE (EC 2.7.1.-) (NPKC-ETA) (PKC-L). 318-345 PKPT1_HUMAN SEINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-). 149-176 209-253 PKPY1_HUMAN PYRUVATE KINASE, M1 (MUSCLE) ISOZYME (EC 2.7.1.40) (CYTOSOLIC THTROID 243-289 PKPY2_HUMAN PYRUVATE KINASE, M2 ISOZYME (EC 2.7.1.40). 243-289 PKPYR_HUMAN PYRUVATE KINASE, ISOZYME R (EC 2.7.1.40). 2-29 PKRET_HUMAN PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RET (EC 2.7.1.112). 183-217 PKROS_HUMAN ROS PROTO-ONCOGENE TYROSINE KINASE (EC 2.7.1.112) (FRAGMENT). 157-203 PKSRC_HUMAN PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC (EC 2.7.1.112) (P60-SRC) 143-170 PKU7_HUMAN LUPUS KU AUTOANTIGEN PROTEIN P70 (70 KD SUBUNIT OF KU ANTIGEN). 235-279 PKU86_HUMAN LUPUS KU AUTOANTIGEN PROTEIN P86 (86 KD SUBUNIT OF KU ANTIGEN). 258-292 PKYES_HUMAN PROTO-ONCOGENE TYROSINE-PROTEIN KINASE YES (EC 2.7.1.112) (P61-YES) 209-243 PLAMI_HUMAN LAMIN B1. 32-66 117-144 152-193 214-241 397-424 480-507 510-539 PLAMA_HUMAN LAMIN A (70 KD LAMIN). 32-88 114-165 292-343 PLAMC_HUMAN LAMIN C. 32-88 114-1665 292-343 PLAR_HUMAN LAR PROTEIN PRECURSOR (LEUXCYTE ANTIGEN RELATED) (EC 3.1.3.48). 935-969 PLA_HUMAN LUPUS LA PROTEIN (SJOGREN SYNDROME TYPE B ANTIGEN (SS-B)). 191-222 295-342 PLCAT_HUMAN PHOSPHATIDYLCHOLINE-STEOL ACYLTRANSFERASE PRECURSOR (EC 2.3.1.43) 131-158 PLDHH_HUMAN L-LACTATE DEHYDROGENASE H CHAIN (EC 1.1.1.27) (LDH-B). 81-108 302-329 PLDHM_HUMAN L-LACTATE DEHYDROGENASE M CHAIN (EC 1.1.1.27) (LDH-A). 225-252 PLDLR_HUMAN LOW-DENSITY LIPROTEIN RECEPTOR PRECURSOR. 483-510 PLECH_HUMAN ASIALOGLYCOPROTEIN RECEPTOR 1 (HEPATIC LECTIN H1) (ASGPR). 62-96 PLEM3_HUMAN P-SELECTIN PRECURSOR (GRANULE MEMBRANE PROTEIN 140) (GMP-140) (PADGEM) 32-59 87-116 PLGUL_HUMAN LACTOYLGLUTATHIONE LYASE (EC 4.4.1.5) (METHYLGLYOXALASE) 83-117 PLIF_HUMAN LEUKAEMIA INHIBITORY FACTOR PRECURSOR (LIF) (DIFFERENTIATION- 95-122 PLIN1_HUMAN LINE-1 REVERSE TRANSCRIPTASE HOMOLOG. 152-179 232-263 298-358 671-698 874-901 1036-1066 PLIPG_HUMAN TRIACYLGLYCEROL LIPASE PRECURSOR (EC 3.1.1.3) (LIPASE, GASTRIC). 158-185 PLIPS_HUMAN HORMONE SENSITIVE LIPASE (EC 3.1.1.-) (HSL). 305-332 PLKHA_HUMAN LEUKOTRIENE A-4 HYDROLASE (EC 3.3.2.6) (LTA-4 HYDROLASE) (LEUKOTRIENE 42-83 290-324 PLMA_HUMAN LAMININ A CHAIN PRECURSOR. 1318-1345 1741-1771 1785-1812 1824-1851 1884-1921 1965-1999 2026-2059 2091-2118 PLMB1_HUMAN LAMININ B) CHAIN PRECURSOR. 1267-1314 1364-1394 1597-1631 1651-1714 1722-1781 PLMB2_HUMAN LAMININ B2 CHAIN PRECURSOR. 1103-1135 1513-1547 PLMP2_HUMAN LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 2 PRECURSOR (LAMP-2). 155-182 PLOX2_HUMAN ARACHIDONATE 12-LIPOXYGENASE (EC 1.13.11.31) (12-LOX). 341-368 PLOX5_HUMAN ARACHIDONATE 5-LIPOXYGENASE (EC 1.13.11.34) (5-LIPOXYGENASE) (5-LO). 50-87 PLPH_HUMAN LACTASE-PHLORIZIN HYDROLASE PRECURSOR (EC 3.2.1.108) (EC 3.2.1.62) 776-803 PLRPB_HUMAN PROTEIN-TYROSINE PHOSPHATASE BETA PRECURSOR (EC 3.1.3.48) (PTP-BETA). 140-167 589-637 PLRPG_HUMAN PROTEIN-TYROSINE PHOSPHATASE GAMMA PRECURSOR (EC 3.1.3.48) 1081-1108 PLRPZ_HUMAN PROTEIN-TYROSINE PHOSPHATASE ZETA PRECURSOR (EC 3.1.3.48) (PTP-ZETA). 553-587 1024-1051 1973-2000 PLSHR_HUMAN LUTROPIN-CHORIOGONADOTROPIC HORMONE RECEPTOR PRECURSOR (LH/CG-R) 66-114 448-480 PLV2B_HUMAN IG LAMBDA CHAIN V-II REGION (NEI). 61-88 PLYAG_HUMAN LYSOSOMAL ALPHA-GLUCOSIDASE PRECURSOR (EC 3.2.1.20) (ACID MALTASE). 885-912 PM2OM_HUMAN MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEIN (OGCP). 50-77 PMAC2_HUMAN GALACTOSE-SPECIFIC LECTIN (MAC-2 ANTIGEN) (IGE-BINDING PROTEIN) (35 KD 219-246 PMAN9_HUMAN MAN(9)-ALPHA-MANNOSIDASE (EC 3.2.1.-). 414-441 PMANA_HUMA MANNOSE-6-PHOSPHATE ISOMERASE (EC 5.3.1.8) (PHOSPHOMANNOSE ISOMERASE) 60-87 PMANR_HUMA MACROPHAGE MANNOSE ECEPTOR PRECURSOR. 248-284 1147-1182 PMAP2_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 2 (FRAGMENT). 434-478 PMAP4_HUMAN MICROTUBULE-ASSOCIATED PROTEIN 4. 408-449 PMAX_HUMAN MAX PROTEIN. 117-144 PMDM2_HUMA MDM2 PROTEIN (P53-ASSOCIATED PROTEIN). 235-288 PMDR1_HUMAN MULTIDRUG RESISTANCE PROTEIN 1 (P-GLYCOPROTEIN 1). 561-595 PMERL_HUMAN MERLIN (SCHWANNOMIN). 377-407 532-566 PMERO_HUMAN MEROSIN HEAVY CHAIN (LAMININ CHAIN A2) (FRAGMENT). 71-105 139-173 431-458 791-818 PMGMT_HUMA METHYLATED-DNA-PROTEIN-CYSTEINE METHYLTRANSFERASE (EC 2.1.1.63) (6-O- 91-118 PMKLP_HUMAN MITOTIC KINESIN-LIKE PROTEIN-1. 207-234 PMLCH_HUMAN MELANIN-CONCENTRATING HORMONE PRECURSOR. 8-35 PMLK1_HUMAN MIXED LINEAGE KINASE 1 (EC 2.7.1.-) (FRAGMENT). 130-157 321-348 PMMSA_HUMA METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 393-420 PMOES_HUMAN MOESIN (MEMBRANE-ORGANIZING EXTENSION SPIKE PROTEIN). 119-146 351-403 PMPCP_HUMAN MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN PRECURSOR. 286-313 PMP13_HUMAN M-PHASE INDUCER PHOSPHATASE 3 (EC 3.1.3.48). 72-99 PMPKK_HUMAN DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE (EC 2.7.1.-) 19-50 PMPRI_HUMAN CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR PRECURSOR (CI MAN-6- 1569-1596 2437-2478 PMRP_HUMAN MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN. 396-423 507-548 PMSHR_HUMAN MELANOCYTE STIMULATING HORMONE RECEPTOR (MSH-R) (MELANOTROPIN 38-65 PMSRE_HUMAN MACROPHAGE SCAVENGER RECEPTOR TYPES I AND II (MACROPHAGE ACETYLATED 173-204 230-260 PMTDM_HUMA DNA (CYTOSINE-5)-METEYLTRANSFERASE (EC 2.1.1.37) (DNA 387-414 601-628 PMTF1_HUMAN MITOCHONDRIALTRANSCRIPTION FACTOR I PRECURSOR (MTTF1) 181-212 PMUTA_HUMAN METHYLMALONYL-COA MUTASE PRECURSOR (EC 5.4.99.2) (MCM). 468-519 PMX1_HUMAN INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXA (INTERFERON- 108-150 PMX2_HUMAN INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXB (P78-RELATED 451-489 670-697 PMYBA_HUMA MYB-RELATED PROTEIN A (FRAGMENT). 619-646 PMYBB_HUMAN MYB-RELATED PROTEIN B. 87-117 PMYCN_HUMA N-MYC PROTO-ONCOGENE PROTEIN. 263-300 413-461 PMYC_HUMAN MYC PROTO-ONCOGENE PROTEIN. 393-422 PMYF4_HUMAN MYOGENIC FACTOR MYF-4 (MYOGENIN). 119-146 PMYF5_HUMAN MYOGENIC FACTOR MYF-5. 121-148 PMYP2_HUMAN MYELIN P2 PROTEIN. 70-110 PMYPR_HUMAN MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILIN) (CONTAINS: MYELIN 43-70 PMYSA_HUMAN MYOSIN HEAVY CHAIN, CARDIAC MUSCLE ALPHA ISOFORM (FRAGMENT). 38-75 84-111 137-178 236-324 398-435 440-485 PMYSB_HUMAN MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM. 48-75 951-981 997-1044 1088-1122 1192-1234 1266-1332 1360-1408 1442-1479 1488-1532 1541-1582 1640-1681 1683-1710 1801-1838 PMYSE_HUMAN MYOSIN HEAVY CHAIN, FAST SKELETAL MUSCLE, EMBRYONIC. 46-73 860-903 952-1077 1119-1146 1193-1235 1267-1340 1364-1411 1483-1597 1641-1675 1707-1734 1827-1858 PMYSP_HUMAN MYOSIN HEAVY CHAIN, PERINATAL CARDIAC MUSCLE (FRAGMENT). 50-77 95-125 141-188 215-272 403-483 507-552 586-624 685-736 784-818 823-907 946-987 1049-1076 PMYSS_HUMAN MYOSIN HEAVY CHAIN, SKELETAL MUSCLE (FRAGMENT). 133-160 193-280 304-349 423-460 468-526 581-608 645-681 743-798 808-835 846-873 PMYT1_HUMAN MYELIN TRANSCRIPTION FACTOR 1 (MYT1) (FRAGMENT) 640-678 PNACA_HUMAN SODIUM/CALCIUM EXCHANGER PRECURSOR (NA+/CA2+-EXCHANGE PROTEIN). 492-519 594-621 705-735 PNCA2_HUMAN NEURAL CELL ADHESION MOLECULE, PHOSPHATIDYLINOSITOL-LINKED ISOFORM 255-282 PNCF1_HUMAN NEUTROPHIL CYTOSOL FACTOR 1 (NCF-47K) (47 KD AUTOSOMAL CHRONIC 234-261 310-337 PNCF2_HUMAN NEUTROPHIL NADPH OXIDASE FACTOR (P67-PHOX). 5-32 PNEFA_HUMAN DNA-BINDING PROTEIN NEFA PRECURSOR. 50-77 82-112 343-395 PNEP_HUMAN NEPRILYSIN (EC 3.4.24.11) (NEUTRAL ENDOPEPTIDASE) (NEP) 170-216 644-671 PNF1_HUMAN NEUROFIBROMIN (NEUROFIBROMATOSIS-RELATED PROTEIN NF-1) (FRAGMENT). 1145-1172 1388-1422 1639-1666 PNFH_HUMAN NEUROFILAMENT TRIPLET H PROTEIN (200 KD NEUROFILAMENT PROTEIN) (NF-H). 91-128 431-490 PNFL_HUMAN NEUROFILAMENT TRIPLET L PROTEIN (68 KD NEUROFILAMENT PROTEIN) (NF-L). 92-126 441-468 PNFM_HUMAN NEUROFILAMENT TRIPLET M PROTEIN (160 KD NEUROFILAMENT PROTEIN) (NF-M). 101-141 164-194 215-280 315-372 737-764 794-826 872-913 PNK1R_HUMAN SUBSTANCE-P RECEPTOR (SPR) (NK-1 RECEPTOR) (NK-1R). 338-365 PNK4_HUMAN NATURAL KILLER CELLS PROTEIN 4 PRECURSOR. 166-193 PNKCR_HUMAN NK-RECOGNITION PROTEIN (NATURAL-KILLER CELLS CYCLOPHILIN- 187-214 448-475 559-599 701-742 816-843 1080-1133 PNKGA_HUMAN NKG2-A AND NKG2-B TYPE II INTEGRAL MEMBANE PROTEINS. 28-55 PNOS1_HUMAN NITRIC-OXIDE SYNTHASE, BRAIN (EC 1.14.13.39) (NOS, TYPE 1). 389-416 1116-1146 1292-1319 PNOS3_HUMAN NITRIC-OXIDE SYNTHASE, ENDOTHELIAL (EC 1.14.13.39) (EC-NOS) (NOS, 389-416 PNTG1_HUMAN SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 1. 131-158 PNTR_HUMAN NEUROTENSIN RECEPTOR (NT-R). 57-84 PNTSE_HUMAN SODIUM-DEPENDENT SEROTONIN TRANSPORTER (SHT TRANSPORTER) (SHTT). 71-98 PNTTA_HUMAN SODIUM- AND CHLORIDE-DEPENDENT TAURINE TRANSPORTER. 120-147 PNU2M_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 (EC 1.6.5.3). 202-240 PNU4M_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (EC 1.6.5.3). 164-191 372-399 PNUBN_HUMAN NUCLEBINDIN PRECURSOR. 46-73 360-387 PNUCL_HUMAN NUCLEOLIN (PROTEIN C23). 462-508 PNY3R_HUMAN PUTATIVE NEUROPEPTIDE Y RECEPTOR TYOE 3 (NPY3-R) (FB22) (NPYRL). 115-142 POAT_HUMAN ORNITHINE AMINOTRANSFERASE PRECURSOR (EC 2.6.1.13) (ORNITHINE--OXO- 98-128 POC3A_HUMAN OCTAMER-BINDING TRANSCRIOTION FACTOR 3A (OCT-3A). 139-173 POC3B_HUMAN OCTAMER-BINDING TRANSCRIOTION FACTOR 3B (OCT-3B). 37-78 POCRL_HUMAN LOWE'S OCULOCEREBRORENAL SYNDROME PROTEIN. 704-735 PODB2_HUMAN LIPOAMIDE ACYLTRANSFERASE COMPONENT (E2) PRECURSOR OF BRANCHED-CHAIN 100-127 375-402 PODP2_HUMAN DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT (E2) OF PYRUVATE 72-99 POMGP_HUMAN OLIGODENDROCYTE-MYELIN GLYCOPROTEIN PRECURSOR (OMG). 53-80 POPSB_HUMAN BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT). 220-247 POPSG_HUMAN GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT). 90-117 239-266 POPSR_HUMAN RED-SENSTTIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT). 90-117 239-266 POSTP_HUMAN OSTEOPONTIN PRECURSOR (BONE SIALOPROTEIN 1) (URINARY STONE PROTEIN) 239-266 POTC_HUMAN ORNITHINE CARBAMOYLTRANSFERASE PRECURSOR (EC 2.1.3.3). 170-204 POTNC_HUMAN OSTEONECTIN PRECURSOR (BASEMENT MEMBRANE PROTEIN BM-40). 173-207 POXYB_HUMAN OXYSTEROL-BINDING PROTEIN. 89-123 190-217 290-317 577-604 POXYR_HUMAN OXYTOCIN RECEPTOR OT-R). 350-377 PP107_HUMAN RETINOBLASTOMA-ASSOCIATED PROTEIN-LIKE 107 KD HOMOLOG (P107) 159-186 422-449 PPIDP_HUMAN DNA POLYMERASE ALPHA HOLOENZYME-ASSOCIATED PROTEIN P1. 19-60 637-664 PP47_HUMAN PLECKSTRIN (P47). 298-325 PP4HA_HUMAN PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR (EC 1.14.11.2). 29-69 191-218 PP60_HUMAN MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60 LYMPHOCYTE PROTEIN) 72-99 271-298 361-407 PP8SA_HUMAN PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT (P13-KINASE 12-39 428-476 586-613 688-715 PPAP1_HUMAN PANCREATITIS ASSOCIATED PROTEIN 1 PRECURSOR. 77-104 PPAX5_HUMAN PAIRED BOX PROTEIN PAN-5 (B-CELL SPECIFIC TRANSCRIPTION FACTOR) 157-187 PPDGA_HUMAN PLATELET-DERIVED GROWTH FACTOR, A CHAIN PRECURSOR (PDGF A-CHAIN) 38-65 PPECI_HUMAN PLATELET ENDOTHELIAL CELL ADHESION MOLECULE PRECURSOR (PECAM-1) 685-719 PPENK_HUMAN PROENKEPHALIN A PRECURSOR. 142-176 PPERE_HUMAN EOSINOPHIL PEROXIDASE PRECURSOR (EC 1.11.1.7) (EPO) (FRAGMENT). 308-335 PPERF_HUMAN PERFORIN I PRECURSOR (P1) (LYMPHOCYTE PORE FORMING PROTEIN) (PFP). 411-438 PPF4L_HUMAN PLATELET BASIC PROTEIN PRECURSOR (PBP) (CONTAINS: CONNECTIVE-TISSUE 21-55 PPGCA_HUMAN CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN PRECURSOR (CSPCP) 73-100 PPGCS_HUMAN LARGE FIBROBLAST PROTEOGLYCAN PRECURSOR (VERSICAN) (CHONDROITIN 64-98 1390-1417 1553-1580 PPGDH_HUMAN 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE (NAD(+)) (EC 1.1.1.141) (PGDH). 87-118 PPGDR_HUMAN BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR PRECURSOR (EC 2.7.1.112). 294-321 354-384 465-495 PPGDS_HUMAN ALPHA PLATELET-DERIVED GROWTH FACTOR RECEPTOR PRECURSOR 64-94 347-395 461-488 524-551 986-1058 PPGHS_HUMAN PROSTAGLANDIN G/H SYNTHASE PRECURSOR (EC 1.14.99.1) (CYCLOOXYGENASE) 331-358 PPGS1_HUMAN BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR (BIGLYCAN) (PG-S1). 100-127 PPH4H_HUMAN PHENYLALANINE-4-HYDROXYLASE (EC 1.14.16.1) (PAH) (PHE-4- 239-266 PPHB_HUMAN PROHIBITIN. 41-68 PPHOS_HUMAN PHOSDUCIN (33 KD PHOTOTRANSDUCING PROTEIN) (MEKA PROTEIN). 184-225 PPHS1_HUMAN GLYCOGEN PHOSPHORYLASE, LIVER FORM (EC 2.4.1.1). 116-143 PPHS2_HUMAN GLYCOGEN PHOSPHORYLASE, MUSCLE FORM (EC 2.4.1.1). 532-559 PPHS3_HUMAN GLYCOGEN PHOSPHORYLASE, BRAIN FORM (EC 2.4.1.1). 533-560 PPIP4_HUMAN 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE BETA 2 908-935 PPIP5_HUMAN 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHIDIESTERASE GAMMA 2 142-169 239-266 PPLAK_HUMAN PLAKOGLOBIN (DESMOPLAKIN III). 373-400 PPLSL_HUMAN L-PLASTIN (FIMBRIN). 507-534 PPLST_HUMAN T-PLASTIN (FIMBRIN). 510-561 PPM22_HUMAN PERIPHERAL MYELIN PROTEIN 22 (PMP-22). 3-33 PPMGB_HUMAN PHOSPHOGLYCERATE MUTASE, BRAIN FORM (EC 5.4.2.4) (PGAM-B) (EC 5.4.2.4) 81-111 PPMGM_HUMA PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (EC 5.4.2.4) (PGAM-M). 81-115 PPML1_HUMAN PROBABLE TRANSCRIPTION FACTOR PML-1. 551-585 PPMLX_HUMAN PROBABLE TRANSCRIPTION FACTOR PML-X. 551-585 PPMSC_HUMAN AUTOANTIGEN PM-SCL. 103-130 PPOGA_HUMAN DNA-BINDING PROTEIN PO-GA. 14-51 182-209 610-637 667-699 PPOL1_HUMAN RETROVIRUS-RELATED POL POLYPROTEIN (REVERSE TRANSCRIPTASE 774-804 PPOL2_HUMAN RETROVIRUS-RELATED POL POLYPROTEIN (FRAGMENT). 78-138 171-205 PPORI_HUMAN OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN (VOLTAGE-DEPENDENT) ANIO 33-76 189-216 PPPAP_HUMAN PROSTATIC ACID PHOSPHATASE PRECURSOR (EC 3.1.3.2). 235-269 PPPAS_HUMAN RED CELL ACID PHOSPHATASE 1, ISOZYME S (EC 3.1.3.2) (ACP1). 26-53 PPPOL_HUMAN NAD(+) ADP-RIBOSYLTRANSFERASE (EC 2.4.2.30) (POLY(ASP-RIBOSE) 699-729 972-1003 PPRC2_HUMAN PROTEASOME COMPONENT C2 (EC 3.4.99.46) (MACROPAIN SUBUNIT C2) 39-66 PPRC3_HUMAN PROTEASOME COMPONENT C3 (EC 3.4.99.46) (MACROPAIN SUBUNIT C3) 34-61 PPRC9_HUMAN PROTEASOME COMPONENT C9 (EC 3.4.99.46) (MACROPAIN SUBUNIT C9) 203-261 PPRGR_HUMAN PROGESTERONE RECEPTOR (PR) (FORMS A AND B). 846-890 PPRTS_HUMAN VITAMIN K-DEPENDENT PROTEIN S (BLOOD CLOTTING) PRECURSOR 337-371 PPRTZ_HUMAN VITAMIN K-DEPENDENT PROTEIN Z PRECURSOR 29-56 PPSOR_HUMAN PSORIASIN. 65-92 PPSPD_HUMAN PULMONARY SURFACTANT-ASSOCIATED PROTEIN D PRECURSOR (PSP-D) (SP-D). 224-251 PPTHY_HUMAN PARATHYROID HORMONE PRECURSOR (PARATHYRIN). 86-113 PPTN1_HUMAN PROTEIN-TYROSINE PHOSPHATASE 1B (EC 3.1.3.48) (PTP-1B). 136-177 PPTN2_HUMAN T-CELL PROTEIN-TYROSINE PHOSPHATASE (EC 3.1.3.48) (TCPTP). 59-86 138-178 PPTN6_HUMAN PROTEIN-TYROSINE PHOSPHATASE 1C (EC 3.1.3.48) (PTP-1C) (HEMATOPOIETIC 227-261 512-580 PPTNB_HUMAN PROTEIN-TYROSINE PHOSPHATASE 2C (EC 3.1.3.48) (PTP-2C) (PTP-1D) 41-68 218-245 PPTNC_HUMAN PROTEIN-TYROSINE PHOSPHATASE G1 (EC 3.1.3.48) (PTPG1). 618-645 695-722 PPTRR_HUMAN PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED PEPTIDE 368-395 PPTX3_HUMAN PENTAXIN-RELATED PROTEIN PTX3 PRECURSOR. 74-101 PPUR2_HUMAN PHOSPHORIBOSYLAMINE-GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE 803-830 PPUR6_HUMAN MULTIFUNCTIONAL PROTEIN ADE2H1 (PHOSPHORIBOSYLAMINDIMIDAZOLE- 391-418 PPUR8_HUMAN ADENYLOSUCCINATE LYASE (EC 4.3.2.2) (ADENYLOSUCCINASE) (ASL). 204-231 PPYR5_HUMAN URIDINE 5′-MONOPHOSPHATE SYNTHASE (UMP SYNTHASE) (OROTATE 120-450 PPYRG_HUMAN CTP SYNTHASE (EC 6.3.4.2) (UTP-AMMONIA LIGASE) (CTP SYNTHETASE). 86-113 300-334 PPZP_HUMAN PREGNANCY ZONE PROTEIN PRECURSOR. 315-354 990-1024 1162-1189 1405-1432 PRA74_HUMAN TRANSCRIPTION FACTOR IIF, ALPHA SUBUNIT (TFIIF, ALPHA SUBUNIT) 474-501 PRAB4_HUMAN RAS-RELATED PROTEIN RAB-4. 38-65 PRAB6_HUMAN RAS-RELATED PROTEIN RAB-6. 123-150 PRADI_HUMAN RADIXIN. 308-335 414-463 510-537 PRB11_HUMAN RAS-RELATED PROTEIN RAB-11 (24KG) (YL8). 151-178 PRBB3_HUMAN RETINOBLASTOMA BINDING PROTEIN 3 (RBBP-3) (PRB-BINDING PROTEIN E2F-1) 129-156 161-223 PRDP_HUMAN RD PROTEIN. 9-53 PRENI_HUMAN RENIN PRECURSOR, RENAL (EC 3.4.23.15) (ANGIOTENSINOGENASE). 136-163 PREST_HUMAN RESTIN (CYTOPLASMIC LINKER PROTEIN-170 ALPHA-2) (CLIP-170). 190-217 333-370 445-472 571-619 744-771 784-852 1023-1050 1088-1039 1157-1184 1216-1306 PRPA1_HUMAN REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (RP-A) (RF-A) 208-235 425-455 PRFP_HUMAN TRANSFORMING PROTEIN (RFP) (RET FINGER PROTEIN). 183-217 PRH_HUMAN BLOOD GROUP RH(D) POLYPEPTIDE. 361-388 PRIB1_HUMAN RIBOPHORIN I PRECURSOR. 81-108 496-530 PRIB2_HUMAN RIBOPHORIN II PRECURSOR 142-172 361-388 PRIR1_HUMAN RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN (EC 1.17.4.1) 42-69 370-400 PRL22_HUMAN 60S RIBOSOMAL PROTEIN L22 (EPSTEIN-BARR VIRUS SMALL RNA ASSOCIATED 78-112 PRL26_HUMAN 60S RIBOSOMAL PROTEIN L26. 55-89 103-137 PRL9_HUMAN 60S RIBOSOMAL PROTEIN L9. 146-192 PRLA0_HUMAN 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E). 138-165 PRO5_HUMAN 52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN (SS-A)). 190-235 238-265 PRO6_HUMAN 60 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN (SS-A)). 192-245 PROC_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS C1/C2 (HNRNP C1 AND HNRNP 16-43 PROL_HUMAN HETEROGENEOUS RIBONUCLEOPTOTEIN L (HRNPL). 501-528 PROU_HUMAN HETEROGENOUS RIBONUCLEOPTOTEIN U. 630-657 PRPB1_HUMAN DNA-DIRECTED RNA POLYMERASE II 215 KD POLYPEPTIDE 269-296 665-720 879-906 1314-1341 1371-1398 PRPB2_HUMAN DNA-DIRECTED RNA POLYMERASE II 140 KD POLYPEPTIDE 626-667 1008-1035 PRPB3_HUMAN DNA-DIRECTED RNA POLYMERASE II 33 KD POLYPEPTIDE 242-274 PRRXA_HUMAN RETINOIC ACID RECEPTOR RXR-ALPHA. 318-352 PRRXB_HUMAN RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 1. 376-403 PRRXC_HUMAN RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 2. 396-423 PRS12_HUMAN 40S RIBOSOMAL PROTEIN S12. 60-87 PRS16_HUMAN 40S RIBOSOMAL PROTEIN S16. 80-116 PRS25_HUMAN 40S RIBOSOMAL PROTEIN S25. 26-53 PRS27_HUMAN 40S RIBOSOMAL PROTEIN S27A. 14-41 PRS7_HUMAN 40S RIBOSOMAL PROTEIN S7 (S8). 73-100 PRS8_HUMAN 40S RIBOSOMAL PROTEIN S8 136-163 PRTC1_HUMAN RAS-LIKE PROTEIN TC21. 123-150 PRU1A_HUMAN U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (U1 SNRNP A PROTEIN). 13-47 PRU2B_HUMAN U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B″. 17-44 PRYNR_HUMAN RYANODINE RECEPTOR, SKELETAL MUSCLE 154-188 495-522 866-893 2750-2777 2820-2847 3304-3331 3529-3556 3912-3919 4921-4948 PS10A_HUMAN S-100 PROTEIN, ALPHA CHAIN. 12-54 PS10B_HUMAN S-100 PROTEIN, BETA CHAIN. 14-56 PS10D_HUMAN S-100 PROTEIN. 31-58 PSAHH_HUMAN ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1) (S-ADENOSYL-L-HOMOCYSTEINE 389-416 PSAT1_HUMAN DNA-BINDING PROTEIN SATB1. 709-736 PSCCA_HUMAN SQUAMOUS CELL CARCINOMA ANTIGEN (SCCA) (PROTEIN T4-A). 78-105 PSCF_HUMAN STEM CELL FACTOR PRECURSOR (SCF). 74-101 PSEM1_HUMAN SEMENOGELIN I PROTEIN PRECURSOR (SGI) (CONTAINS: SEMINAL BASIC 64-98 176-226 288-329 334-368 PSEM2_HUMAN SEMENOGELIN II PRECURSOR (SGII). 71-98 183-226 304-355 405-439 539-575 PSET_HUMAN SET PROTEIN. 38-65 154-181 PSG1_HUMAN SECRETOGRANIN I PRECURSOR (CHROMOGRANIN B). 144-178 PSG2_HUMAN SECRETOGRANIN II PRECURSOR (CHROMOGRANIN C). 254-281 290-337 534-561 PSIAL_HUMAN BONE SIALOPROTEIN II PRECURSOR (BSP II). 84-113 155-193 256-283 PSN2L_HUMAN POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L. 231-258 545-572 PSNOB_HUMAN SKI-RELATED ONCOGENE SNON. 414-441 PSPCA_HUMAN SPECTRIN ALPHA CHAIN. 193-220 570-621 655-712 1099-1126 1461-1502 1882-1909 1988-2022 2120-2154 2223-2250 2346-2373 PSPCB_HUMAN SPECTRIN BETA CHAIN, ERYTHROCYTE. 150-177 336-350 486-520 648-675 987-1021 1027-1083 1287-1324 1347-1374 1834-1861 PSPRE_HUMAN SEPIAPTERIN REDUCTASE (EC 1.1.1.153) (SPR). 90-124 PSRF_HUMAN SERUM RESPONSE FACTOR (SRF). 77-104 480-507 PSRPR_HUMAN SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT (SR-ALPHA) 76-110 PSSR1_HUMAN SOMATOSTATIN RECEPTOR TYPE 1. 289-316 PSTHM_HUMAN STATHMIN (PHOSPHOPROTEIN P19) (ONCOPROTEIN P18) (LEUKEMIA-ASSOCIATED 47-74 PSUIS_HUMAN SUCRASE-ISOMALTASE, INTESTINAL (EC 3.2.1.48)/(EC 3.2.1.10). 1748-1775 PSYB1_HUMAN SYNAPTOBREVIN 1. 31-67 PSYD2_HUMAN ASPARTYL-TRNA SYNTHETASE ALPHA-2 SUBUNIT (EC 6.1.1.12) (ASPARTATE- 44-71 PSYEP_HUMAN MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (CONTAINS: GLUTAMYL-TRN 174-201 740-771 PSYH_HUMAN HISTIDYL-TRNA SYNTHETASE (EC 6.1.1.21) (HISTIDINE-TRNA LIGASE). 380-442 468-502 PSYTI_HUMAN SYNAPTOTAGMIN I (P65). 140-167 250-277 PSYTC_HUMAN THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.3) (THREONINE-TRNA 497-524 658-615 PSYV_HUMAN VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE-TRNA LIGASE) (VALRS). 230-257 413-440 PSYW_HUMAN TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN-TRNA LIGASE) 93-127 196-223 PT2EB_HUMAN TRANSCRIPTION INITIATION FACTOR IIE-BETA CHAIN (TFIIE-BETA). 34-68 PTAP4_HUMAN TRANSCRIPTION FACTOR AP-4 (FRAGMENT). 169-196 245-272 PTAPB_HUMAN TRANSCRIPTION FACTOR JUN-B. 296-323 PTAPD_HUMAN TRANSCRIPTION FACTOR JUN-D. 291-333 PTAU1_HUMAN MICROTUBULE-ASSOCIATED PROTEIN TAU. 278-305 PTAU2_HUMAN MICROTUBULE-ASSOCIATED PROTEIN TAU, FETAL. 211-238 PTCO1_HUMAN TRANSCOBALAMIN I PRECURSOR. 201-241 330-357 PTCP1_HUMAN T-COMPLEX PROTEIN 1 (TCP-1). 316-343 PTDT_HUMAN DNA NUCLEOTIDYLEXOTRANSFERASE (EC 2.7.7.31) (TERMINAL ADDITIONENZYME) 61-95 PTEK_HUMAN RECEPTOR TYROSINEPROTEIN KINASE TEK PRECURSOR (EC 2.7.1.112) (HPK-6). 664-678 968-996 1007-1036 PTF2B_HUMAN TRANSCRIPTION INITIATION FACTOR IIB (TFIIB). 135-162 PTFE3_HUMAN TRANSCRIPTION FACTOR E3 (FRAGMENT). 43-70 122-149 1780-226 PTFS2_HUMAN TRANSCRIPTION ELONGATION FACTOR S-II. 29-56 PTF_HUMAN TISSUE FACTOR PRECURSOR (TF) (CALGULATION FACTOR III). 148-175 PTGF1_HUMAN TRANSFORMING GROWTH FACTOR BETA 1 PRECURSOR (TGF-BETA 1). 148-185 PTGF2_HUMAN TRANSFORMING GROWTH FACTOR BETA 2 PRECURSOR (TGF-BETA 2) (GLIOBLASTO 243-270 PTGFA_HUMAN TRANSFORMING GROWTH FACTOR ALPHA PRECURSOR (TGF-ALPHA) (EGF-LIKE TGH 87-114 PTGLK_HUMAN PROTEIN-GLUTAMINE GAMMA-GLUTAMYL TRANSFERASE K (EC 2.3.2.13) 258-285 PTHBS_HUMAN THROMBOSPONDIN PRECURSOR. 110-165 284-314 PTHIK_HUMAN 3-KETOACYL-COA THIOLASE PEROXISOMAL PRECURSOR (EC 2.3.1.16) (BETA- 185-212 PTKNB_HUMAN PROTACHYKININ BETA PRECURSOR (CONTAINS: SUBSTANCE P. NEUROKININ 11-38 PTLE1_HUMAN TRANSDUCIN-LIKE ENHANCER PROTEIN 1. 626-653 PTLE2_HUMAN TRANSOUCIN-LIKE ENHANCER PROTEIN 2. 94-125 PTLE4_HUMAN TRANSDUCIN-LIKE ENHANCER PROTEIN 4 (FRAGMENT). 304-331 PTOPA_HUMAN DNA TOPOISOMERASE II, ALPHA ISOZYME (EC 5.99.1.3). 19-46 503-532 PTOPB_HUMAN DNA TOPOISOMERASE II, BETA ISOZYME (EC 5.99.1.3). 35-65 616-647 PTPM3_HUMAN TROPOMYOSIN, FIBROBLAST ISOFORM TM3. 16-74 82-116 PTPMA_HUMAN TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE. 16-43 47-74 82-116 147-174 191-237 243-277 PTPMB_HUMAN TROPOMYOSIN BETA CHAIN, SKELETAL MUSCLE. 37-116 193-240 PTPMC_HUMAN TROPOMYOSIN ALPHA CHAIN, CARDIAC MUSCLE. 16-74 82-116 193-277 PTPMF_HUMAN TROPOMYOSIN, FIBROBLAST AND EPITHELIAL MUSCLE-TYPE (TM36) (TMEI) 37-116 210-240 243-270 PTPMG_HUMAN TROPOMYOSIN, FIBROBLAST NON-MUSCLE TYPE (TM30PL). 46-80 111-138 158-199 207-234 PTPMI_HUMAN TROPOMYOSIN, CYTOSKELETAL TYPE (TM30NM). 46-80 111-138 172-199 PTPMS_HUMAN TROPOMYOSIN ALPHA CHAIN, SMOOTH MUSCLE (FRAGMENT). 25-59 147-178 PTPP2_HUMAN TRIPEPTIDYL-PEPTIDASE II (EC 3.4.14.10) (TPP II) (TRIPEPTIDYL 153-187 1004-1031 1160-1187 PTPR_HUMAN TPR ONCOGENE (FRAGMENT). 82-147 PTR36_HUMAN TREB36 PROTEIN. 18-45 242-269 PTRFR_HUMAN THYROTROPIN-RELEASING HORMONE RECEPTOR (TRH-R) (THYROLIBERIN 349-383 PTRIC_HUMAN TROPONIN I, CARDIAC MUSCLE. 36-63 PTRKA_HUMAN HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR PRECURSOR (EC 2.7.1.112) 66-93 117-148 PTRSR_HUMAN TRANSFERRIN RECEPTOR PROTEIN (TR) (ANTIGEN CD71) (T9). 188-215 366-393 PTSHR_HUMAN THYROTROPIN RECEPTOR PRECURSOR (TSH-R). 87-117 420-447 PTTK_HUMAN PROTEIN KINASE TKK (EC 2.7.1.-). 170-197 324-359 510-544 549-583 PTYK2_HUMAN NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2 (EC 2.7.1.112). 150-177 PUBA1_HUMAN UBIQUTTIN-ACTIVATING ENZYME E1 (A159 PROTEIN). 448-475 PUEF1_HUMAN NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR 1) (UBF-1). 227-254 PUDP0_HUMAN UDP-GLUCURONOSYLTRANSFERASE PRECURSOR, MICROSOMAL (EC 2.4.1.17) 227-254 PUFO_HUMAN RECEPTOR TYROSINE-PROTEIN KINASE UFO PRECURSOR (EC 2.7.1.112). 488-522 PUSF1_HUMAN UPSTREAM STIMULATORY FACTOR 1. 251-295 PVATC_HUMAN VACUOLAR ATP SYNTHASE SUBUNIT C (EC 3.6.1.34)(V-ATPASE C SUBUNIT). 47-74 117-147 PYIL1_HUMAN VILLIN. 338-372 427-461 717-744 PVIME_HUMAN VIMENTIN. 119-146 233-260 PVINC_HUMAN VINCULIN. 108-135 PVPRT_HUMAN RETROVIRUS-RELATED PROTEASE (EC 3.4.23.-). 95-134 PWEE1_HUMAN WEE1-LIKE PROTEIN KINASE (EC 2.7.1.112). 354-388 PWT1_HUMAN HUMAN WILMS' TUMOR PROTEIN (WT33). 247-274 PXBP1_HUMAN X BOX BINDING PROTEIN-1 (XBP-1) (TREB5 PROTEIN). 97-135 PXPAC_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-A CELLS (XERODERMA PIGMENTOSUM 180-211 PXPCC_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-C CELLS (XERODERMA PIGMENTOSUM 134-168 701-728 PXPDC_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-D CELLS (XERODERMA PIGMENTOSUM 264-291 PXPGC_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS (XERODERMA PIGMENTOSUM 83-110 715-766 1047-1081 PXRCC_HUMAN DNA-REPAIR PROTEIN XRCC1. 23-57 PZN10_HUMAN ZINC FINGER PROTEIN 10 (ZINC FINGER PROTEIN KOXI) (FRAGMENT). 29-56 PZN40_HUMAN ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY VIRUS TYPE I ENHANCER- 17-62 307-334 1071-1098 1469-1500 2013-2057 2146-2180 PZN45_HUMAN ZINC FINGER PROTEIN 45 (BRC1744) (FRAGMENT). 3-30 201-228 PZN46_HUMAN ZINC FINGER PROTEIN 46 (ZINC FINGER PROTEIN KUP). 121-149

TABLE X Search Results Summary for PCTLZIP, P1CTLZIP, and P2CTLZIP Motifs PCTLZIP P1CTLZIP P2CTLZIP LIBRARY FILE LIBRARY FILE LIBRARY FILE PENV_FOAMV 481-496 PENV_BIV06 434-450 PENV_BIV06 525-542 PENV_HV1MA 438-453 PENV_BIV27 463-479 PENV_BIV27 554-571 PENV_HV1MF 183-198 PENV_FOAMV 481-496 864-880 PENV_FENV1 30-47 630-647 PENV_HV1RH 445-460 PENV_HV1KB 752-768 PENV_FIVPE 781-795 PENV_HV18C 186-201 PENV_HV1MA 437-463 PENV_FIVSD 779-796 PENV_HV1Z2 123-138 PENV_HV1MF 183-198 PENV_FIVT2 780-797 PENV_HV1ZH 438-453 PENV_HV1RH 444-460 PENV_FLVC8 38-55 624-641 PENV_HV2BE 760-785 PENV_HV1S1 738-754 PENV_FLVGL 605-622 PENV_HV2D1 741-756 PENV_HY1SC 186-201 PENV_FLVLB 625-642 PENV_HV2G1 741-756 PENV_HV1Z2 123-138 PENV_FLVBA 602-619 PENV_HV2NZ 742-757 PENV_HY1Z3 117-133 PENV_FOAMV 710-727 957-974 PENV_HV2RO 761-788 PENV_HV1ZH 437-453 PENV_FSVGA 625-642 PENV_HV2SB 743-768 PENV_HV2BE 750-765 PENV_FSVGB 605-622 PENV_HV2ST 746-780 PENV_HV2D1 741-756 PENV_FSVBM 608-625 PENV_JSRV 104-119 PENV_HV2G1 741-756 PENV_HV1OY 123-140 PENV_MMTVB 818-833 PENV_HV2NZ 742-757 PENV_HV1Z2 410-427 PENV_MMTVG 818-833 PENV_HY2RO 751-766 PENV_HV1Z3 154-171 PENV_SIVMK 139-164 PENV_HV2SB 743-758 PENV_HV2CA 760-767 PENV_SIVML 139-154 PENV_HV2ST 746-780 PENV_MCFF 600-617 PHEMA_CVBLY 391-408 PENV_JSRV 104-119 541-557 PENV_MCFF3 601-618 PHEMA_CVBM 391-408 PENV_MCFF 397-413 PENV_MLVAV 630-647 PHEMA_CVBQ 391-408 PENV_MCFF3 397-413 PENV_MLVCB 625-642 PHEMA_CVHOC 391-408 PENV_MLVAV 427-443 PENV_MLVF5 639-656 PHEMA_CVMA5 402-417 PENV_MLVCB 422-438 PENV_MLVFF 639-656 PHEMA_CVMS 403-418 PENV_MLVHO 423-439 PENV_MLVFP 639-656 PHEMA_INBAA 296-310 PENV_MLVMO 426-442 PENV_MLVHO 626-643 PHEMA_INBBE 303-318 PENV_MLVRD 424-440 PENV_MLVKI 167-184 PHEMA_INBBO 293-308 PENV_MLVRK 424-440 PENV_MLVMO 829-846 PHEMA_INBEN 301-318 PENV_MMTVB 616-633 PENV_MLVRD 824-841 PHEMA_INBFU 288-301 PENV_MMTVG 618-633 PENV_MLVRK 824-841 PHEMA_INBGL 298-311 PENV_SFV1 864-880 PENV_MSVFB 170-187 PHEMA_INBHK 293-308 PENV_SFV3L 861-877 PENV_RMCFV 603-620 PHEMA_INBIB 288-303 PENV_SIVGB  93-109 PENV_SFV1 710-727 957-974 PHEMA_INBIO 299-314 PENV_SIVMK 139-154 802-818 PENV_SFV3L 707-724 954-971 PHEMA_INBLE 302-317 PENV_SIVML 139-154 801-817 PENV_SIVM1 766-783 PHEMA_INBMD 292-307 PENV_SIVS4 806-822 PENV_SIVMK 765-782 PHEMA_INBME 298-311 PENV_SIVSP 810-828 PENV_SIVML 764-781 PHEMA_INBNA 288-303 PHEMA_CDVO 36-52 PENV_SIVS4 769-786 PHEMA_INBOR 301-316 PHEMA_CVBLY 391-406 PENV_SIVSP 773-790 PHEMA_INSSI 301-316 PHEMA_CVBM 391-406 PENV_SMRVH 536-553 PHEMA_INSSJ 298-313 PHEMA_CVBQ 391-406 PENV_SMSAV 42-59 PHEMA_INBUS 294-309 PHEMA_CVHOC 391-406 PHEMA_CDVO 36-53 200-217 PHEMA_INBVI 298-311 PHEMA_CVMA5 402-417 PHEMA_CVBLY 391-408 PHEMA_INBVK 303-318 PHEMA_CVMS 403-418 PHEMA_CVBM 391-408 PHEMA_INBYB 288-301 PHEMA_IAAIC 237-253 PHEMA_CVBQ 391-408 PHEMA_MUMPM 133-148 PHEMA_IABAN 221-237 PHEMA_CVHOC 391-408 PHEMA_MUMPR 133-148 PHEMA_IABUD 234-250 PHEMA_IAAIC 322-339 PHEMA_MUMPS 133-148 PHEMA_IACKA 234-250 PHEMA_IABAN 308-323 PHEMA_PI1HW 345-380 PHEMA_IACKG 231-247 PHEMA_IABUD 320-337 PHEMA_PI2H 65-80 PHEMA_IACKV 230-246 PHEMA_IACKA 320-337 PHEMA_PI2HT 65-80 PHEMA_IADA1 234-250 PHEMA_IACKG 318-333 PHEMA_RINDK 366-383 PHEMA_IADA3 237-253 PHEMA_IACKP 302-319 PHEMA_SV5  7-94 PHEMA_IADCZ 234-250 PHEMA_IACKQ 302-319 PHEMA_SV5CM  7-94 PHEMA_IADH1 221-237 PHEMA_IACKS 319-336 PHEMA_SV5CP  7-94 PHEMA_IADH2 221-237 PHEMA_IACKV 315-332 PHEMA_SV5LN  7-94 PHEMA_IADH3 221-237 PHEMA_IADA1 320-337 PVENV_DHVI1 42-57 PHEMA_IADH4 221-237 PHEMA_IADA3 322-339 PVFP7_CAPVK  89-104 PHEMA_IADH5 221-237 PHEMA_IADCZ 320-337 PVFUS_VACC8 72-87 PHEMA_IADH6 221-237 PHEMA_IADH1 306-323 PVG01_BPP22 242-257 PHEMA_IADH7 221-237 PHEMA_IADH2 306-323 PVG01_HSVEB 169-184 PHEMA_IADM2 237-253 PHEMA_IADH3 306-323 PVG01_HSVI1 210-225 317-332 PHEMA_IADNZ 234-250 PHEMA_IADH4 306-323 PVG06_BPT4 194-199 PHEMA_IAEN6 221-237 PHEMA_IADH6 306-323 PVG07_BPT4 885-900 PHEMA_IAEN7 237-253 PHEMA_IADH7 306-323 PVG08_HSVI1 134-149 PHEMA_IAFPR 230-248 PHEMA_IADM2 322-338 PVG10_BPPH2 183-198 PHEMA_IAHAL 236-252 PHEMA_IADNZ 320-337 PVG10_BPPZA 183-198 PHEMA_IAHAR 235-251 PHEMA_IADU3 322-339 PVG10_HSVSA 109-124 PHEMA_IAHC6 230-248 PHEMA_IAEN6 306-323 PVG16_BPP1 81-96 PHEMA_IAHC7 230-248 PHEMA_IAEN7 322-339 PVG18_BPT4 468-483 PHEMA_IAHCD 230-248 PHEMA_IAFPR 315-332 PVG25_BPT4  97-112 PHEMA_IAHDE 230-248 PHEMA_IAGRE 320-337 PVG29_HSVI1 20-35 PHEMA_IAHFO 238-252 PHEMA_IAGU2 320-337 PVG30_BPPHS 11-94 PHEMA_IAHK8 238-252 PHEMA_IAGUA 319-338 PVG36_BPOX2 22-37 PHEMA_IAHK7 238-252 PHEMA_IAHAL 321-338 PVG38_HSVSA 108-123 PHEMA_IAHLE 230-246 PHEMA_IAHC8 315-332 PVG37_BPT2 1253- PHEMA_IAHLO 230-246 PHEMA_IAHC7 315-332 1288 PVG37_HSVI1 284-299 PHEMA_IAHMI 238-252 PHEMA_IAHDE 315-332 PVG55_HSVI1 22-37 143-158 PHEMA_IAHNM 238-252 PHEMA_IAHDE 315-332 PVG66_HSVI1 268-283 PHEMA_IANRO 238-252 PHEMA_IAHFO 321-338 PVG68_HSVI1 102-117 PHEMA_IAHSA 238-252 PHEMA_IAHK6 321-338 PVG69_HSVI1 267-282 PHEMA_IAHSP 230-248 PHEMA_IAHK7 321-338 PVG86_HSVI1 518-533 PHEMA_IAHSW 230-248 PHEMA_IAHLE 315-332 PVG9_BPPH2 234-249 PHEMA_IAHTE 238-252 PHEMA_IAHLO 315-332 PVG9_BPPZA 234-249 PHEMA_IAHTO 238-252 PHEMA_IAHMI 321-336 PVG9_BPV1R 57-72 PHEMA_IAHUR 238-252 PHEMA_IAHNM 321-338 PVGF_BPPHX 234-249 PHEMA_IAKIE 238-251 PHEMA_IAHNN 315-332 PVGL2_CVBF 284-279 PHEMA_IALEN 235-251 PHEMA_IAHPR 315-332 PVGL2_CVBL9 284-279 PHEMA_IAMAA 233-249 PHEMA_IAHBA 321-338 PVGL2_CVBLY 284-279 PHEMA_IAMAB 238-254 PHEMA_IAHBA 321-338 PVGL2_CVBM 284-279 PHEMA_IAMAO 237-253 PHEMA_IAHSP 315-332 PVGL2_CVBQ 284-279 PEHMA_IAME1 237-253 PHEMA_IAHSW 315-332 PVGL2_CVBV 284-279 PHEMA_IAME2 237-253 PHEMA_IAHTE 321-336 PVGL2_CVPFS 442-457 PHEMA_IAME6 221-237 PHEMA_IAHTO 321-336 PVGL2_CVPPU 440-485 504-519 PHEMA_IAMIN  85-101 231-247 PHEMA_IAHUR 321-336 PVGL2_CVPRS 218-233 PHEMA_IANTS 237-253 PHEMA_IAJAP 317-334 PVGL2_CVPRM 218-233 PHEMA_IAQU7 221-237 PHEMA_IAMAA 319-336 PVGL2_IBVS 1056- PHEMA_IARUD 234-250 PHEMA_IAMAB 324-341 1071 PVGL2_IBVB 1055- PHEMA_IASE2 234-250 PHEMA_IAMAO 322-339 1070 PVGL2_IBVD2 1056- PHEMA_IASH2 234-250 PHEMA_IAME1 322-339 1071 PVGL2_IBVK 1055- PHEMA_IASTA 230-246 PHEMA_IAME2 322-339 1070 PVGL2_IBVM 1055- PHEMA_IATAI 235-251 PHEMA_IAME6 308-323 1070 PVGLB_HSVSA 701-716 PHEMA_IATKM 234-250 PHEMA_IAMIN 316-333 PVGLB_PRVIF 203-218 PHEMA_IATKO 233-249 PHEMA_IANT6 322-339 PVGLC_HSVBC 475-490 PHEMA_IATKR 230-246 PHEMA_IAPIL 320-337 PVGLC_HSVE4 444-469 PHEMA_IATKW 229-245 PHEMA_IAQU7 306-323 PVGLC_HSVEB 427-442 PHEMA_IAUDO 237-253 PHEMA_IARUD 320-337 PVGLC_PRVIF 448-461 PHEMA_IAUSS 235-251 PHEMA_IASE2 320-337 PVGLD_HSV11 79-94 PHEMA_IAVI7 236-254 PHEMA_IASH2 321-338 PVGLD_HSV2 79-94 PHEMA_IAXIA 235-251 PHEMA_IASTA 315-332 PVGLF_BRSVA 265-280 PHEMA_IAZCO 237-253 PHEMA_IATKM 320-337 PVGLF_BRSVC 265-280 PHEMA_IAZH2 221-237 PHEMA_IAUDO 322-339 380-397 PVGLF_BRSVR 265-280 PHEMA_IAZH3 221-237 PHEMA_IAVI7 323-340 PVGLF_HRSV1 265-280 PHEMA_IAZUK 237-263 PHEMA_IAZCO 322-339 PVGLF_HRSVA 265-280 PHEMA_INBAA 115-131 296-310 PHEMA_IAZH2 306-323 PVGLF_HRSVL 265-280 PHEMA_INBBE 123-139 303-318 PHEMA_IAZH3 306-323 PVGLF_HRSVR 265-280 PHEMA_INBBO 116-132 293-308 PHEMA_IAZUK 322-339 PVGLF_MUMPS  6-94 PHEMA_INBEN 123-139 301-318 PHEMA_MUMPM 101-118 PVGLI_VZVD 276-293 PHEMA_INBFU 108-124 288-301 PHEMA_MUMPR 101-118 PVGLM_HANTB 900-915 PHEMA_INBGL 119-135 298-311 PHEMA_MUMPS 101-118 PVGLM_PTPV 743-768 PHEMA_INBHK 116-132 293-308 PHEMA_NDVA  93-110 PVGLM_SEOUR 901-916 PHEMA_INBIB 108-124 288-303 PHEMA_NDVB  93-110 PVGLM_SEOUS 900-915 PHEMA_INBID 120-136 299-314 PHEMA_NDVD  93-110 PVGLY_LASSG 426-441 PHEMA_INBLE 123-139 302-317 PHEMA_NDVH  93-110 PVGLY_LASSJ 427-442 PHEMA_INBMD 113-129 292-307 PHEMA_NDVI  93-110 PVGLY_MOPEI 426-440 PHEMA_INBME 116-132 298-311 PHEMA_NDVM  93-110 PVM3_REOVD 521-538 PHEMA_INBNA 108-124 288-303 PHEMA_NDVQ  93-110 PVMSA_HPBGS 380-395 PHEMA_INBOR 123-139 301-316 PHEMA_NDVTG  93-110 PVMSA_HPBV9 187-202 PHEMA_INBBI 123-139 301-316 PHEMA_NDVU  93-110 PVMSA_WHV1 378-393 PHEMA_INBSJ 119-135 298-313 PHEMA_PHODV 36-53 PVMSA_WHV59 383-398 PHEMA_INBUS 116-132 294-309 PHEMA_PI1HW 486-603 PVMSA_WHV7 383-398 PHEMA_INBVI 116-182 296-311 PHEMA_PI3B 111-128 PVMSA_WHV8 383-398 PHEMA_INBVK 123-139 303-318 PHEMA_PI3H4 111-128 PVMSA_WHV8I 383-398 PHEMA_INBYB 108-124 288-301 PHEMA_PI3HA 111-128 PVMSA_WHVWB 234-249 PHEMA_MUMPM 133-148 PHEMA_PI3HT 111-128 PVMT2_IAANN 25-40 PHEMA_MUMPR 133-148 PHEMA_PI3HU 111-128 PVMT2_IABAN 25-40 PHEMA_MUMPS 133-148 PHEMA_PI3HV 111-128 PVMT2_IAFOW 25-40 PHEMA_PI1HW 345-360 PHEMA_PI3HW 111-128 PVMT2_IAFPR 25-40 PHEMA_PI2H 65-81 PHEMA_PI3HX 111-128 PVMT2_IAFPW 25-40 PHEMA_PI2HT 65-81 PHEMA_PI4HA 50-67 PMVT2_IALE1 25-40 PHEMA_PI3B 324-340 PHEMA_SV41  85-102 PVMT2_IALE2 25-40 PHEMA_PI3H4 324-340 PHEMA_SV5  84-101 PVMT2_IAMAN 25-40 PHEMA_PI3HA 324-340 PHEMA_SV5CM  84-101 PVMT2_IAPUE 25-40 PHEMA_PI3HT 324-340 PHEMA_SV5CP  84-101 PVMT2_IASIN 25-40 PHEMA_PI3HU 324-340 PHEMA_SV5LN  84-101 PVMT2_IAUDO 25-40 PHEMA_PI3HV 324-340 PVF05_VACCC 280-297 PVMT2_IAWIL 25-40 PHEMA_PI3HW 324-340 PVF06_VACCP 280-297 PVMT9_MYXVL 226-241 PHEMA_PI3HX 324-340 PVF08_VACCV 281-298 PHEMA_RINDK 368-383 PVF09_VACCC 176-193 PHEMA_SV5  7-94 PVF09_VACCV 176-193 PHEMA_SV5CM  7-94 PVG27_HSVSA 209-226 PHEMA_SV5CP  7-94 PVG28_HSVI1 173-190 PHEMA_SV5LN  7-94 PVG39_HSVI1 884-886 PVENV_DHVI1 42-57 PVG43_HSVI1 109-126 521-538 PVENV_EAV 26-41 PVG67_HSVI1 171-188 PVFP2_FOWPV  88-104 PVG72_HSVI1 1252- 1289 PVFP7_CAPVK  89-104 PVGF1_IBVB 3073- 3090 PVFUS_VACC6 72-87 PVGL2_IBVB 1094- 1111 PVG01_HSVEB 169-184 PVGLB_HSVE1 736-763 PVG01_HSVI1 209-225 317-332 PVGLB_HSVE4 675-692 PVG08_HSVI1 134-149 PVGLB_HSVEA 736-753 PVG10_HSVSA 109-124 PVGLB_HSVEB 736-753 PVG11_HSVI1 103-119 PVGLB_HSVEL 736-763 PVG12_HSVI1 270-288 PVGLB_ILTV8 597-614 PVG1_SPV1R 78-92 PVGLB_ILTVS 607-624 PVG29_HSVI1 20-35 PVGLB_ILTVT 607-624 PVG88_BPOX2 22-37 PVGLC_PRVIF 180-197 PVG36_HSVSA 108-123 PVGLE_VZVD 469-488 PVG37_HSVI1 284-299 PVGLF_SV5 401-418 PVG41_HSVI1 244-260 PVGLH_HCMVA 385-382 PVG46_HSVI1 1244-1260 PVGLH_HCMVT 364-381 PVG55_HSVI1 22-37 143-158 PVGLH_HSVI1 245-262 803-820 PVG58_HSVI1 268-283 PVGLH_HSV1E 245-262 803-820 PVG58_HSVI1 101-117 PVGLI_HSVI1 43-60 PVG58_HSVSA 130-146 330-346 PVGLM_BUNL7 81-98 PVG59_HSVI1 267-282 PVGLM_BUNSH 81-98 PVG65_HSVI1 362-378 518-533 PVGLM_PUUMH 712-729 PVG71_HSVSA  89-105 PVGLM_PUUMB 712-729 PVG9_BPPH2 234-249 PVGLM_RVFV 344-361 PVG8_BPPZA 234-249 PVGLM_RVFVZ 344-361 PVG9_SPV1R 57-72 PVGLY_LASSG 12-94 PVGF1_IBVB 2210-2228 PVGLY_LASSJ 12-94 PVGL2_CVBF 123-139 174-190 264-279 PVGLY_LYCVA 12-94 PVGL2_CVBL9 123-139 174-190 264-279 PVGLY_LYCVW 12-94 PVGL2_CVBLY 123-139 174-190 264-279 PVGLY_MOPEI 12-94 PVGL2_CVBM 123-139 174-190 264-279 PVM1_REOVD 280-297 PVGL2_CVBQ 31-47 123-139 174-190 264-279 PVM1_REOVL 280-297 PVGL2_CVBV 123-139 174-190 264-279 PVMAT_CDVO 148-165 PVGL2_CVM4  95-111 1267-1283 PVMAT_MEASI  87-104 PVGL2_CVMA5  95-111 1215-1231 PVMP_CAMVC 147-164 PVGL2_CVMJH  95-111 1126-1142 PVMP_CAMVD 147-164 PVGL2_CVPFS 442-457 800-818 1274-1290 PVMP_CAMVE 147-164 PVGL2_CVPPU 440-455 504-519 798-814 1272-1288 PVMP_CAMVN 147-164 PVGL2_CVPR8 218-233 576-592 1050-1066 PVMP_CAMVS 147-164 PVGL2_CVPRM 218-233 578-592 1050-1066 PVMP_CAMVW 147-164 PVGL2_FIPV 803-819 1277-1293 PVMSA_HPBV0 11-94 PVGL2_IBV8 1056-1071 PVMSA_HPBV2 185-202 PVGL2_IBVB 1055-1070 PVMSA_HPBV4 185-202 PVGL2_IBVD2 1056-1071 PVMSA_HPBVA 174-191 PVGL2_IBVK 1055-1070 PVMSA_HPBVD 11-94 PVGL2_IBVM 1055-1070 PVMSA_HPBVJ 174-191 PVGLB_HSVSA 701-716 PVMSA_HPBVL 174-191 PVGLB_PRVIF 203-218 PVMSA_HPBVN 11-94 PVGLB_VZVD 522-538 PVMSA_HPBVO 174-191 PVGLC_HBVBC 475-490 PVMSA_HPBVP 185-202 PVGLC_HSVE4 444-459 PVMSA_HPBVR 185-202 PVGLC_HSVEB 427-442 PVMSA_HPBVS 11-94 PVGLC_PRVIF 448-461 PVMSA_HPBVW 174-191 PVGLC_VZVD 150-188 PVMSA_HPBVY 174-191 PVGLC_VZVS 150-188 PVMSA_HPBVZ 174-191 PVGLD_HSV11 79-94 PVMT2_IAANN 25-42 PVGLD_HSV2 79-94 PVMT2_IABAN 25-42 PVGLE_PRVRI  3-94 PVMT2_IAFOW 25-42 PVGLF_BRSVA 205-221 265-280 PVMT2_IAFPR 25-42 PVGLF_BRSVC 205-221 265-280 PVMT2_IAFPW 25-42 PVGLF_BRSVR 205-221 265-280 PVMT2_IALE1 25-42 PVGLF_CDVO 398-414 PVMT2_IALE2 25-42 PVGLF_HRSV1 205-221 265-280 PVMT2_IAMAN 25-42 PVGLF_HRSVA 205-221 265-280 PVMT2_IAPUE 25-42 PVGLF_HRSVL 205-221 265-280 PVMT2_IASIN 25-42 PVGLF_HRSVR 205-221 265-280 PVMT2_IAUDO 25-42 PVGLF_MEASE 286-302 PVMT2_IAWIL 25-42 PVGLF_MEASI 289-305 PVGLF_MEASY 288-302 PVGLF_MUMPM 278-292 PVGLF_MUMPR 278-292 PVGLF_MUMPS  5-94 276-292 PVGLF_NDVA 273-289 PVGLF_NDVB 273-289 PVGLF_NDVM 273-289 PVGLF_NDVT 273-289 PVGLF_NDVTG 273-289 PVGLF_NDVU 273-289 PVGLF_PHODV 269-285 367-383 PVGLF_RINDK 282-298 PVGLF_RINDL 282-298 PVGLF_TRTV 175-191 PVGLI_VZVD 278-293 PVGLM_HANTB 355-371 900-915 PVGLM_HANTH 499-515 PVGLM_HANTL 499-515 PVGLM_HANTV 499-515 PVGLM_PTPV 743-758 PVGLM_PUUMH 509-525 PVGLM_PUUMS 509-526 PVGLM_SEOUR 355-371 901-916 PVGLM_SEOUS 355-371 900-915 PVGLM_UUK 826-842 PVGLP_BEV 869-885 PVGLY_LASSG 12-94 428-441 PVGLY_LASSJ 12-94 427-442 PVGLY_LYCVA 12-94 PVGLY_LYCVW 12-94 PVGLY_MOPEI 12-94 425-440 PVGLY_PIARV 12-94 PVGNM_CPMV 1021-1037 PVM3_REOVD 521-536 PVMAT_MUMPS 191-207 PVMAT_NDVA 135-161 PVMAT_NDVB 135-161 PVMAT_PI2HT 189-205 PVMAT_SV41 189-205 PVMAT_SV6  98-114 132-148 PVMP_CAMVC 118-134 PVMP_CAMVD 118-134 PVMP_CAMVE 118-134 PVMP_CAMVN 118-134 PVMP_CAMVS 118-134 PVMP_CAMVW 118-134 PVMP_FMVD 115-131 PVMSA_HPBGS 380-395 PVMSA_HPBV9 187-202 PVMSA_WHV1 378-393 PVMSA_WHV59 383-398 PVMSA_WHV7 383-398 PVMSA_WHV8 383-398 PVMSA_WHV8I 383-398 PVMSA_WHVW8 234-249 PVMT2_IAANN 25-40 PVMT2_IABAN 25-40 PVMT2_IAFOW 25-40 PVMT2_IAFPR 25-40 PVMT2_IAFPW 25-40 PVMT2_IALE1 25-40 PVMT2_IALE2 25-40 PVMT2_IAMAN 25-40 PVMT2_IAPUE 25-40 PVMT2_IASIN 25-40 PVMT2_IAUDO 25-40 PVMT2_IAWIL 25-40 PVMT9_MYXVL 226-241

TABLE XI Search Results Summary for P3CTLZIP, P4CTLZIIP, P5CTLZIP, and P6CTLZIP Motifs P3CTLZIP P4CTLZIP P5CTLZIP P6CTLZIP LIBRARY FILE LIBRARY FILE LIBRARY FILE LIBRARY FILE PENV_BIV27 147-185 PENV1_FRSFV 380-399 PENV1_FRSFV 380-400 PENV_BIV06 47-68 525-546 PENV_CAEVC 810-828 PENV_AVISU  98-117 PENV2_FRSFV 380-400 PENV_BIV27 47-68 147-168 554-575 PENV_CAEVG 808-828 PENV_BIV27 147-166 PENV_BAEVM 170-190 PENV_FENV1 226-246 830-861 PENV_HV2BE 750-788 PENV_HV12H 123-142 PENV_FIVPE 781-801 PENV_FLVC8 624-645 PENV_HV2D1 741-759 PENV_HV2D2  9-29 PENV_FIVSD 779-799 PENV_FLVGL 447-468 606-626 PENV_HV2G1 741-759 PENV_HV2SB 778-797 PENV_FIVT2 780-800 PENV_FLVLB 467-488 625-648 PENV_HV2NZ 742-760 PENV_JSRV 541-560 PENV_FLVGL  9-29 PENV_FLVSA 444-465 602-623 PENV_HV2RO 751-769 PENV_RSVP 533-552 PENV_FOAMV 255-275 924-944 PENV_FOAMV 153-174 957-978 PENV_HV2SB 743-761 PHEMA_VACCC 173-192 PENV_FSVGA  9-29 PENV_FSVGA 487-488 625-646 PENV_HV2ST 745-763 PHEMA_VACCI 173-192 PENV_HV1C4 428-448 PENV_FSVGB 447-468 605-626 PENV_JSRV 376-394 PHEMA_VACCT 173-192 PENV_HV2CA 750-770 PENV_FSVSM 460-471 808-829 PHEMA_PI2H 118-138 PHEMA_VACCV 173-192 PENV_MLVF5 400-420 PENV_FSVST 467-488 PHEMA_PI2HT 118-138 PVENV_BEV 62-81 PENV_MMTVB 643-663 PENV_GALV 52-73 619-640 PHEMA_SV41 55-73 PVENV_MCV1 61-80 PENV_MMTVG 643-663 PENV_HV2BE 750-771 PVENV_THOGV 473-491 PVENV_MCV2 61-80 PENV_OMVVS 76-95 PENV_HV2G1 741-702 PVG18_BPP22  83-101 PVFUS_ORFNZ 29-48 PENV_RSVP 42-62 PENV_HV2NZ 742-783 PVG24_BPT4 115-133 PVG01_HSVEB 169-188 PENV_SFV1 924-944 PENV_HV2RO 751-772 PVG36_HSVSA 344-362 PVG01_VACCC 376-395 PENV_SFV3L 921-941 PENV_HV2BT 745-766 PVQ40_HSVI1 14-32 PVG01_VACCV 315-334 PENV_SIVM1 766-788 PENV_MCFF 800-821 PVG50_HSVSA  5-94 PVG01_VARV 376-395 PENV_SIVMK 765-785 PENV_MCFF3 801-822 PVQ51_BPT4 63-81 PVG06_BPT4 627-646 PENV_SIVML 764-784 PENV_MLVAV 830-851 PVG51_HSVI1  84-102 PVG10_HSVI1 35-54 PENV_SIVS4 769-789 PENV_MLVCB 625-646 PVG85_HSVI1 155-173 PVG11_HSVI1 103-122 150-189 PENV_SIVSP 773-793 PENV_MLVF6 639-660 PVGF1_IBVB 2788-2806 3374-3392 PVG1_BPPH2 31-50 PHEMA_CDVO 493-513 PENV_MLVFF 639-660 PVGL2_CVH22 1053-1071 PVG1_SPV1R 659-678 PHEMA_CVBLY 391-411 PENV_MLVFP 639-660 PVGL2_IBVB 1056-1074 PVG20_BPT4 231-250 PHEMA_CVBM 391-411 PENV_MLVHO 626-647 PVGL2_IBVB 1055-1073 PVG32_VZVD  90-109 PHEMA_CVBQ 391-411 PENV_MLVKI 167-188 PVGL2_IBVD2 1056-1074 PVG36_BPK3 132-151 PHEMA_CVHOC 391-411 PENV_MLVMO 629-650 PVGL2_IBVK 1055-1073 PVG37_BPT2 19-38 620-648 PHEMA_CVMA5 402-422 PENV_MLVRD 624-645 PVGL2_IBVM 1055-1073 PVG37_BPT4 19-38 625-644 PHEMA_IACKG  81-101 PENV_MLVRK 624-645 PVGLB_HSVB1 580-578 689-707 PVG39_HSVI1 1038-1057 PHEMA_IADMA  81-101 PENV_MSVFB 170-191 PVGLB_HSVBC 692-710 PVG41_HSVI1 62-81 PHEMA_MUMPM 397-417 PENV_RMCFV 603-624 PVGLB_HSVSA 584-602 PVG43_BPPF3 380-399 PHEMA_MUMPR 397-417 PENV_SFV1 957-978 PVGLB_ILTV6 740-758 PVG48_BPPF1 337-356 PHEMA_MUMPS 397-417 PENV_SFV3L 157-178 954-976 PVGLB_ILTVS 760-788 PVG59_HSVI1 142-161 PHEMA_PHODV 493-513 PENV_SIVA1 437-468 PVGLB_ILTVT 760-788 PVG81_HSVI1 117-138 PHEMA_PI1HW 322-342 PENV_SIVAG 442-463 PVGLC_VZVD 431-449 PVG87_HSVI1 318-337 1072-1091 PHEMA_PI2H 13-33 PENV_SIVAI 421-442 PVGLC_VZVS 431-449 PVGF1_IBVB 1587-1606 2108-2127 PHEMA_PI2HT 13-33 PENV_SIVAT 435-468 PVGLF_PI3H4  2-94 PVGL2_CVBF  991-1010 PHEMA_RINDL 497-517 PENV_SMSAV 42-63 PVGLH_HSV8G 314-332 PVGL2_CVBL9  991-1010 PHEMA_SENDS 322-342 PHEMA_CVMA5 402-423 PVGLH_HBVE4 814-832 PVGL2_CVBLY  991-1010 PHEMA_SENDF 322-342 PHEMA_IADE1 266-287 PVGLH_HSVE8 807-826 PVGL2_CVBM  991-1010 PHEMA_SENDH 322-342 PHEMA_MUMPM 225-246 PVGLI_HSV11  5-94 PVGL2_CVBQ  991-1010 PHEMA_SENDJ 322-342 PHEMA_MUMPR 225-246 PVGNM_BFMV 878-898 PVGL2_CVBV  991-1010 PHEMA_SENDZ 322-342 PHEMA_MUMPS 225-246 PVM01_VACCC 134-162 177-195 PVGL2_CVH22 788-787 1115-1134 PVENV_LELV 27-47 148-168 PHEMA_PHODV 213-234 PVM01_VACCV  83-101 126-144 PVGL2_CVM4  999-1018 PVENV_THOGV 356-376 PHEMA_PI2H 13-34 PVM1_REOVD 227-245 PVGL2_CVMA5 947-986 PVG01_VACCC 288-318 PHEMA_PI2HT 13-34 PVM1_REOVL 227-245 PVGL2_CVMJH 858-877 PVG01_VACCV 237-257 PHEMA_SV5  7-28 379-400 PVMAT_HRSVA 44-62 PVGL2_CVPFS 64-83 1038-1057 PVG01_VARV 298-318 PHEMA_SV5CM  7-28 379-400 PVMAT_NDVA 190-208 PVGL2_CVPPU 84-83 1036-1055 PVG06_VACCC 31-51 PHEMA_SV5CP  7-28 379-400 PVMAT_NDVB 190-208 PVGL2_CVPR8 814-833 PVG08_VARV 31-51 PHEMA_SV5LN  7-28 379-400 PVMP_CAMVC 183-201 PVGL2_CVPRM 814-833 PVG09_BPPF1 25-45 PVG01_HSVEB 169-190 PVMP_CAMVD 183-201 PVGL2_FIPV 1041-1060 PVG12_HSVI1 151-171 PVG01_HSVI1 589-610 PVMP_CAMVE 183-201 PVGL2_IBV8 588-807 771-780 PVG22_HSVI1 300-320 PVG23_HSVI1 314-335 PVMP_CAMVN 183-201 PVGL2_IBVB 587-606 770-789 PVG39_HSVI1 648-668 970-990 PVG37_BPOX2 65-86 PVMP_CAMVS 183-201 PVGL2_IBVD2 588-607 771-790 PVG51_HSVI1 29-49 PVG43_HSVI1 167-178 PVMP_CAMVW 183-201 PVGL2_IBVK 587-606 770-789 PVG63_HSVI1 336-356 PVG55_HSVI1 288-309 PVMP_FMVD 180-198 PVGL2_IBVM 587-606 770-780 PVG65_HSVI1 117-137 PVG56_HSVSA  85-108 PVGLB_HCMVA 708-725 PVG74_HSVSA 124-144 PVG58_HSVI1 1165-1178 PVGLB_HCMVT 707-728 PVGL2_IBV6 328-348 PVG58_HSVSA 266-287 PVGLB_HSVSU 117-136 PVGL2_IBVB 327-347 PVG80_HSVI1 30-51 PVGLB_ILTVS 256-275 PVGL2_IBVD2 328-348 PVG83_HSVI1 238-259 PVGLB_ILTVS 266-285 PVGL2_IBVD3 328-348 PVGF1_IBVB 1856-1877 PVGLB_ILTVT 266-285 PVGL2_IBVK 327-347 PVGH3_HCMVA 167-178 PVGLC_HSV11  3-94 467-486 PVGL2_IBVM 327-347 378-398 PVGL2_CVBF 1259-1280 PVGLC_HSV1K  3-94 467-486 PVGL2_IBVU2 310-330 PVGL2_CVBL9 1259-1280 PVGLC_HSVBC 475-494 PVGLB_EBV 732-752 PVGL2_CVBLY 1259-1280 PVGLG_CHAV 438-455 PVGLB_HCMVA 750-770 PVGL2_CVBM 1259-1280 PVGLG_RABVH 372-391 PVGLB_HCMVT 751-771 PVGL2_CVBQ 1259-1280 PVGLI_HSVEB 44-63 PVGLB_HSV23 79-99 PVGL2_CVBV 1259-1280 PVGLI_VZVD 278-297 PVGLB_HSV2H 79-99 PVGL2_CVM4 1317-1338 PVGLM_BUNGE 117-138 PVGLB_HSV28 65-85 PVGL2_CVMA5 1265-1288 PVGLM_PHV 152-171 PVGLB_HSV6U 72-92 PVGL2_CVMJH 1176-1197 PVGLM_PTPV  997-1018 PVGLB_HSVB2 279-299 PVGLB_HSV11  83-104 PVGLM_PUUMH 155-174 PVGLB_HBVSA 63-83 PVGLB_HSV1F  82-103 PVGLM_PUUMS 155-174 PVGLB_MCMV8 738-756 PVGLB_HSV1K  82-103 PVGLM_RVFV 830-849 PVGLF_PI3H4 283-303 PVGLB_HSV1P  83-104 PVGLM_RVFVZ 830-849 PVGLG_RABVE 454-474 PVGLB_MCMVS 135-156 PVGLM_UUK 665-674 PVGLG_RABVH 454-474 PVGLC_PRVIF 446-467 PVGLY_LYCVW  89-108 PVGLG_RABVP 454-474 PVGLF_CDVO 336-357 PVGNB_CPMV 1165-1104 PVGLG_RABVE 454-474 PVGLF_MEASE 224-245 PVM3_REOVD 521-540 PVGLG_RABVT 454-474 PVGLF_MEASI 227-248 PVME1_CVBM 171-190 PVGLH_MCMVS 870-890 PVGLF_MEASY 224-245 PVME1_CVH22 138-156 PVGLM_BUNL7 1325-1345 PVGLF_MUMPM 446-467 PVME1_CVPFS 174-193 PVGLM_BUNSH 1325-1345 PVGLF_MUMPR 446-467 PVME1_CVPPU 174-193 PVGLM_BUNYW  998-1018 PVGLF_MUMPS 446-467 PVME1_CVPRM 174-193 PVGLM_HANTB  999-1019 PVGLF_PHODV 305-326 PVME1_CVTKE 171-190 PVGLM_HANTH 1000-1020 PVGLF_PI1HC 456-477 PVGLM_HANTL 1001-1021 PVGLF_PI2H 450-471 PVGLM_HANTV 1001-1021 PVGLF_PI2HG 450-471 PVGLM_RVFVZ 1156-1176 PVGLF_PI2HT 450-471 PVGLM_SEOUR 1000-1020 PVGLF_PI3B 405-426 453-474 PVGLM_SEOUS  999-1019 PVGLF_PI3H4 453-474 PVGLM_UUK 925-945 PVGLF_RINDK 220-241 PVGLY_LYCVA 12-32 PVGLF_RINDL 220-241 PVGLY_LYCVW 12-32 PVGLF_SEND5 460-481 PVGLY_PIARV 12-32 PVGLF_SENDF 460-481 PVGNB_CPMV 141-161 PVGLF_SENDH 460-481 PVMAT_MUMPS 310-330 PVGLF_SENDJ 460-481 PVMAT_NDVA 309-329 PVGLF_SENDZ 460-481 PVMAT_NDVB 309-329 PVGLF_SV41 463-474 PVMAT_PI2HT 308-328 PVGLF_SV5 446-467 PVMAT_PI4HA 312-332 PVGLH_HCMVA 691-712 PVMAT_PI4HB 312-332 PVGLH_HCMVT 690-711 PVMAT_SV41 308-328 PVGLH_HSVE4 304-325 PVMAT_SV5 308-328 PVGLH_HSVEB 297-318 PVME1_IBVS 74-94 PVGLH_HSVSA 658-679 PVME1_IBVB 74-94 PVGLI_HSV2  2-23 PVME1_IBVB2 74-94 PVGLI_HSV23  2-23 PVME1_IBVK 74-94 PVGLM_BUNGE 197-218 PVMSA_HPBDB 201-221 PVGLM_BUNL7 190-211 PVMSA_HPBGS 209-229 PVGLM_BUNSH 190-211 PVMSA_HPBHE 293-313 PVGLM_BUNYW 193-214 PVMSA_WHV1 207-227 PVGLY_LASSG 237-258 PVMSA_WHV59 212-232 PVGLY_LASSJ 238-259 PVMSA_WHV7 212-232 PVGPB_EBV 67-88 PVMSA_WHVS 212-232 PVM01_VACCC 281-302 PVMSA_WHVSI 212-232 PVM01_VACCV 230-251 PVMSA_WHVWS 63-83 PVMAT_HRSVA 139-160 PVMAT_RINDK 200-221 239-260 PVMAT_TRTV 122-143 PVME1_CVHOC 64-85 PVMSA_HPBDB 201-222 PVMSA_HPBV0 70-91 PVMSA_HPBV2 244-265 PVMSA_HPBV4 244-265 PVMSA_HPBV9 244-265 PVMSA_HPBVA 233-254 PVMSA_HPBVD 70-91 PVMSA_HPBVI 233-254 PVMSA_HPBVJ 233-254 PVMSA_HPBVL 233-254 PVMSA_HPBVN 70-91 PVMSA_HPBVO 233-254 PVMSA_HPBVP 244-265 PVMSA_HPBVR 244-265 PVMSA_HPBVS 70-91 PVMSA_HPBVW 233-254 PVMSA_HPBVY 233-254 PVMSA_HPBVZ 233-254 PVMT2_IAANN 25-46 PVMT2_IABAN 25-46 PVMT2_IAFOW 25-46 PVMT2_IAFPR 25-46 PVMT2_IAFPW 25-46 PVMT2_IALE1 25-46 PVMT2_IALE2 25-46 PVMT2_IAMAN 25-46 PVMT2_IAPUE 25-46 PVMT2_IABIN 25-46 PVMT2_IAUDO 25-46 PVMT2_IAWIL 25-46

TABLE XII Search Results Summary for P7CTLZIP, P8CTLZIP, and P9CTLZIP Motifs P7CTLZIP P8CTLZIP P9CTLZIP LIBRARY FILE LIBRARY FILE LIBRARY FILE PENV_BAEVM 202-224 PENV1_FRSFV 380-403 PENV_BLVAF 303-327 PENV_HV1VB1 498-520 PENV2_FRSFV 380-403 PENV_BLVAU 303-327 PENV_HV1BB 493-516 PENV_BIV06 178-201 PENV_BLVAV 303-327 PENV_HV1BN 494-516 PENV_BIV27 207-230 PENV_BLVB2 303-327 PENV_HV1BR 603-626 PENV_FOAMV 864-887 PENV_BLVB6 303-327 PEVN_HV1EL 495-517 PENV_HV123 175-198 PENV_BLVJ 303-327 PENV_HV1H2 498-520 PENV_HV2BE  3-26 781-804 PENV_FIVPE 781-805 PENV_HV1H3 498-520 PENV_HV2CA 750-773 PENV_FIVSD 779-803 PENV_HV1J3 510-532 PENV_HV2D1  3-26 772-706 PENV_FIVT2 780-804 PENV_HVIJR 490-512 PENV_HV2G1 772-795 PHEMA_CVBLY 391-415 PENV_HV1KB 504-526 PENV_HV2NZ 777-800 PHEMA_CVBM 391-415 PENV_HV1MA 500-522 PENV_JSRV 541-564 PHEMA_CVBQ 391-415 PENV_HV1MF 496-518 PENV_SFV1 884-887 PHEMA_CVHOC 391-415 PENV_HV1ND 488-510 PENV_SFV3L 881-884 PHEMA_INCCA 442-466 PENV_HV1PV 498-520 PENV_SIVM1 803-826 PHEMA_INCEN 430-454 PENV_HV1S1 489-511 PENV_SIVMK 802-825 PHEMA_INCGL 430-454 PENV_HV1Z2 123-145 495-517 PENV_SIVML 801-824 PHEMA_INCHY 429-463 PENV_HV1Z6 497-518 PENV_SIVS4 806-829 PHEMA_INCJH 443-467 PENV_HV1Z8 606-627 PENV_SIVSP 810-833 PHEMA_INCKY 429-453 PENV_HV1ZH 498-520 PHEMA_CDVO 200-223 PHEMA_INCMI 429-453 PENV_JSRV 378-398 PHEMA_PI2H 65-88 PHEMA_INCNA 429-453 PENV_MPMV 213-235 PHEMA_PI2HT 65-88 PHEMA_INCP1 430-454 PENV_SRV1 213-235 PVF11_VACCC 161-184 PHEMA_INCP2 430-454 PHEMA_IAAIC 37-59 PVF16_VACCC 25-48 PHEMA_INCP3 430-454 PHEMA_IABAN 21-43 PVF16_VACCP  3-28 PHEMA_INCTA 430-454 PHEMA_IADA3 37-59 PVG1L_AMEPV 313-338 PHEMA_INCYA 430-454 PHEMA_IADH2 21-43 PVG28_HSVI1 491-514 PHEMA_MUMPM 101-126 PHEMA_IADH3 21-43 PVG43_HSVI1 322-345 PHEMA_MUMPR 101-126 PHEMA_IADH4 21-43 PVG52_HSVI1 229-262 PHEMA_MUMPS 101-125 PHEMA_IADH5 21-43 PVG67_HSVI1 722-745 PHEMA_PI1HW 29-53 PHEMA_IADH6 21-43 PVGL2_CVBF 10-33 PVENV_BEV 62-86 PHEMA_IADH7 21-43 PVGL2_CVBL9 851-874 PVF05_VACCC 280-304 PHEMA_IADM2 37-59 PVGL2_CVBLY 10-33 PVF06_VACCP 280-304 PHEMA_IADMA 28-50 PVGL2_CVM4 1267-1290 PVF06_VACCV 281-305 PHEMA_IADU3 37-59 PVGL2_CVMA5 1215-1238 PVF09_VACCC 176-200 PHEMA_IAEN6 21-43 PVGL2_CVMJH 1128-1149 PVF09_VACCV 176-200 PHEMA_IAEN7 37-59 PVGL2_CVPFS 1274-1297 PVG01_VZVD 68-82 PHEMA_IAMAO 37-59 PVGL2_CVPPU 1272-1295 PVG10_HBVSA 355-379 PHEMA_IAME1 37-59 PVGL2_CVPR8 1050-1073 PVG12_HSVSA 68-92 PHEMA_IAME2 37-59 PVGL2_CVPRM 1050-1073 PVG19_HBVI1  88-112 PHEMA_IAME6 21-43 PVGL2_FIPV 1277-1300 PVG28_HSVI1 173-197 PHEMA_IANT8 37-59 PVGL2_IBVS 196-219 PVG43_HSVI1 109-133 PHEMA_IAQU7 21-43 PVGL2_IBVB 195-218 PVG67_HSVI1 108-132 1005-1029 PHEMA_IATKM 33-55 PVGL2_IBVD2 196-219 PVG72_HSVI1 720-744 PHEMA_IAUDO 37-59 PVGL2_IBVD3 196-219 PVGF1_IBVB 3801-3825 PHEMA_IAVI7 38-60 PVGL2_IBVK 195-218 PVGL8_HSVMD 589-613 PHEMA_IAX31 37-59 PVGL2_IBVM 195-218 PVGLB_ILTV8 597-621 PHEMA_IAZCO 37-59 PVGL2_IBVU1 178-201 PVGLB_ILTVS 607-631 PHEMA_IAZH2 21-43 PVGL2_IBVU2 178-201 PVGLB_ILTVT 607-631 PHEMA_IAZH3 21-43 PVGL2_IBVU3 178-201 PVGLE_HSV11 413-437 PHEMA_IAZUK 37-59 PVGLB_HCMVA 535-558 PVGLE_VZVD 469-493 PHEMA_PHODV 36-58 PVGLB_HCMVT 636-669 PVGLF_SV5 401-425 PHEMA_PI2H 65-87 PVGLB_HSVSA 483-508 PVGLH_HCMVA 574-598 PHEMA_PI2HT 65-87 PVGLB_MCMVS 566-589 PVGLH_HCMVT 573-597 PVFP7_CAPVK  89-111 PVGLC_HSV1I 487-490 PVGLH_HSV1I 443-487 803-827 PVFUS_VACCS 72-94 PVGLC_HSV1K 487-490 PVGLH_HSV1E 443-487 803-827 PVG01_HSVI1 317-339 PVGLC_HSV2 435-468 PVGLM_BUNL7 31-55 PVG03_VACCC 50-72 PVGLC_HSV23 430-459 PVGLM_BUNSH 31-55 PVG03_VARV 50-72 PVGLM_BUNL7 1387-1410 PVGLM_HANTH 694-718 PVG04_VACCC 11-33 PVGLM_BUNSH 1387-1410 PVGLM_RVFV 344-368 PVG04_VARV 11-33 PVGLM_UUK 988-989 PVGLM_RVFVZ 344-368 PVG19_HSVI1  88-110 PVGLY_JUNIN 12-35 PVGLM_UUK 661-685 PVG28_HSVI1 173-195 PVGLY_LASSG 12-35 PVGNM_CPMV 311-335 PVG29_HSVI1 20-42 PVGLY_LASSJ 12-35 PVGP2_EBV 657-681 PVG48_HSVI1 134-156 PVGLY_LYCVA 12-35 PVGP3_EBV 854-878 PVG48_HSVSA 71-93 PVGLY_LYCVW 12-35 PVM1_REOVD 280-304 PVG58_HSVSA 266-288 PVGLY_MOPEI 12-35 PVM1_REOVL 280-304 PVG59_HSVI1 287-289 PVGLY_TACV 12-35 PVM21_REOVD 168-192 PVG5_SPV4 42-64 PVGLY_TACV5 12-35 PVM22_REOVD 168-192 PVG60_HSVI1 53-75 PVGLY_TACV7 12-35 PVM2_REOVJ 168-192 PVG65_HSVI1 1347-1389 PVGLY_TACVT 12-35 PVM2_REOVL 168-192 PVG8_SPV1R 60-82 PVGNM_CPMV 741-764 PVMAT_MEASI  87-111 PVGL2_IBVS 1056-1078 PVM1_REOVD 324-347 454-477 PVMAT_SSPVB 314-338 PVGL2_IBVB 1055-1077 PVM1_REOVL 454-477 PVME1_CVBM 137-161 PVGL2_IBVD2 1056-1078 PVMAT_MUMPS 227-250 PVME1_CVHOC 137-161 PVGL2_IBVK 1055-1077 PVMSA_HPBDB 269-292 PVME1_CVTKE 137-161 PVGL2_IBVM 1055-1077 PVMSA_HPBDC 268-291 PVME1_IBVB 74-98 PVGLB_HSVSU 117-139 PVMSA_HPBDU 231-254 PVME1_IBVB 74-98 PVGLB_HBVB2 745-787 PVMSA_HPBDW 269-292 PVME1_IBVB2 74-98 PVGLC_HSVMB 399-421 PVMSA_HPBHE 236-259 PVME1_IBVK 74-98 PVGLC_HSVMG 398-420 PVMSA_HPBGS 271-295 PVGLC_HSVMM 399-421 PVMSA_WHV1 269-293 PVGLF_BRSVA 285-287 482-504 PVMSA_WHV59 274-298 PVGLF_BRSVC 484-508 PVMSA_WHV7 274-298 PVGLF_BRSVR 484-508 PVMSA_WHV8 274-298 PVGLF_HRSV1 484-508 PVMSA_WHV8I 274-298 PVGLF_HRSVA 484-508 PVMSA_WHVW8 125-149 PVGLF_HRSVL 484-508 PVGLF_HRSVR 484-508 PVGLF_TRTV 452-474 PVGLG_IHNV 77-99 PVGLG_VHSV0 406-428 PVGLH_HSVE4 814-836 PVGLH_HSVEB 807-829 PVGLI_HCMVA 156-180 PVGLM_PTFV 743-765 PVGLP_BEV 430-452 1546-1588 PVGLY_LASSG 426-448 PVGLY_LASSJ 427-449 PVGLY_MOPEI 425-447 PVGP2_EBV 657-679 PVGP3_EBV 854-876 PVM1_REOVD 414-436 PVM1_REOVL 414-436 PVM3_REOVD 304-326 PVMAT_PI1HC 195-217 PVMAT_PI2HT 132-154 PVMAT_SENDF 195-217 PVMAT_SENDH 195-217 PVMAT_SENDZ 195-217 PVMAT_SV41 132-154 PVMEM_EBV 131-153 PVMP_CERV 293-315

TABLE XIII SEARCH RESULTS SUMMARY FOR P12LZIPC MOTIF PCGENE P12CTLZIP All Viruses (No Bacteriophages) AREA AREA AREA AREA AREA AREA AREA AREA AREA FILE NAME PROTEIN VIRUS 1 2 3 4 5 6 7 8 9 P194K_TRVSY POTENTIAL 194 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN SYM) 360-378 463-478 600-619 641-668 1011- 1299- 1385- 1030 1325 1409 P3BHS_VACCC 3BETA-HSD VACCINIA VIRUS (STRAIN COPENHAGEN) 41-56 297-321 P3BHS_VACCV 3BETA-HSD VACCINIA VIRUS (STRAIN WR) 41-56 297-321 P3BHS_VARV 3BETA-HSD VARIOLA VIRUS 41-56 PAT3H_FOWPM ANTITHROMBIN-III HOMOLOG FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 47-69 PATI1_VACCV 94 KD A-TYPE INCLUSION PROTEIN VACCINIA VIRUS (STRAIN WR) 387-410 PATI1_VARV 81 KD A-TYPE INCLUSION PROTEIN VARIOLA VIRUS 388-411 PATI2_HSVI1 UL46 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 279-305 PATI2_HSVIF UL46 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 279-305 PATI2_HSVEB ALPHA TRANS-INDUCING FACTOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 197-222 82 KD PROTEIN PATI2_VACCC PUTATIVE A-TYPE INCLUSION PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 215-241 PATI2_VZVD ALPHA TRANS-INDUCING FACTOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 61-79 377-397 74 KD PROTEIN PATI3_VACCV PUTATIVE A-TYPE INCLUSION PROTEIN VACCINIA VIRUS (STRAIN WR) 47-73 PATIN_HSVBP ALPHA TRANS-INDUCING PROTEIN BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2) 101-120 277-292 PATIN_HSVE4 ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 4 104-123 PATIN_HSVEB ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 129-148 PATIN_VZVD ALPHA TRANS-INDUCING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 203-230 PATI_COWPX A-TYPE INCLUSION PROTEIN COWPOX VIRUS 389-412 1102- 1128 PB2_BBV B2 PROTEIN BLACK BEETLE VIRUS 31-52 PB701_HSV6G TRANSCRIPTIONAL REGULATORY PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 55-78 PBCRF_EBV BCRF1 PROTEIN PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8)  96-123 PBRLI_EBV TRANSCRIPTION ACTIVATOR BRLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 16-32 200-224 PCAHH_VACCC CELL SURFACE-BINDING PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 188-203 PCAHH_VACCV CELL SURFACE-BINDING PROTEIN VACCINIA VIRUS (STRAIN WR) 188-203 PCAHH_VARV CELL SURFACE-BINDING PROTEIN VARIOLA VIRUS 188-203 PCCPH_HSVSA COMPL CONTROL PROTEIN HOMOLOG PREC HERPESVIRUS SAIMIRI (STRAIN 11) 326-348 PCELF_HSVI1 CELL FUSION PROTEIN PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 178-196 212-238 286-309 PCELF_HSV1K CELL FUSION PROTEIN PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 178-196 212-238 PCELF_HSV2H CELL FUSION PROTEIN PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HGS2) 178-196 212-238 265-309 PCELF_HSVEB CELL FUSION PROTEIN PRECURSOR HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 205-223 249-268 PCELF_VZVD CELL FUSION PROTEIN PRECURSOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 246-269 PCGH2_HSVSA CYCLIN HOMOLOG HERPESVIRUS SAIMIRI (STRAIN 11) 35-61 216-242 PCOA1_BFDV COAT PROTEIN VP1 BUDGERIGAR FLEDGLING DISEASE VIRUS  93-110 PCOA1_POVBA COAT PROTEIN VP1 POLYOMAVIRUS BK (STRAIN AS) 25-52  97-123 233-251 PCOA1_POVBK COAT PROTEIN VP1 POLYOMAVIRUS BK 25-52  97-123 233-251 PCOA1_POVBO COAT PROTEIN VP1 BOVINE POLYOMAVIRUS  96-120 PCOA1_POVHA COAT PROTEIN VP1 HAMSTER POLYOMAVIRUS 16-43 PCOA1_POVIC COAT PROTEIN VP1 POLYOMAVIRUS JC 17-44  89-115 225-243 PCOA1_POVLY COAT PROTEIN VP1 LYMPHOTROPIC POLYOMAVIRUS  97-123 PCOA1_POVMK COAT PROTEIN VP1 MOUSE POLYOMAVIRUS (STRAIN KILHAM) 142-160 231-249 PCOA1_SV40 COAT PROTEIN VP1 SIMIAN VIRUS 40 27-44  99-125 235-253 PCOA1_TTV1 COAT PROTEIN TP1 THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)  80-103 PCOA2_POVBO COAT PROTEIN VP2 BOVINE POLYOMAVIRUS  77-104 PCOA2_POVLY COAT PROTEIN VP2 LYMPHOTROPIC POLYOMAVIRUS  79-102 PCOA2_POVM3 COAT PROTEIN VP2 MOUSE POLYOMAVIRUS (STRAIN 3) 205-226 PCOA3_TTV1 COAT PROTEIN TP3 THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 33-55 PCOAT_ABMVW COAT PROTEIN ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA) 148-171 PCOAT_BOOLV COAT PROTEIN PRECURSOR BOOLARRA VIRUS 383-401 PCOAT_CHVP1 MAJOR CAPSID PROTEIN PARAMECIUM BURSARIA CHLORELLA VIRUS 1 364-387 392-409 PCOAT_CLVK COAT PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 165-188 PCOAT_CLVN COAT PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 165-188 PCOAT_CMVSI COAT PROTEIN CYMBIDIUM MOSAIC VIRUS (STRAIN SINGAPORE) 58-76 PCOAT_CNV COAT PROTEIN CUCUMBER NECROSIS VIRUS 19-42 PCOAT_CSMV COAT PROTEIN CHLORIS STRIATE MOSAIC VIRUS 219-238 PCOAT_CTV36 COAT PROTEIN CITRUS TRISTEZA VIRUS (ISOLATE T36) 72-94 PCOAT_FCVC6 COAT PROTEIN FELINE CALICIVIRUS (STRAIN CF1/68 FIV) 564-587 642-664 PCOAT_FCVF4 COAT PROTEIN FELINE CALICIVIRUS (STRAIN JAPANESE F4) 564-587 642-657 PCOAT_FCVF9 COAT PROTEIN FELINE CALICIVIRUS (STRAIN F9) 567-590 645-660 PCOAT_FPV COAT PROTEIN VP1 FELINE PANLEUKOPENIA VIRUS 690-705 PCOAT_FPV19 COAT PROTEIN VP1 FELINE PANLEUKOPENIA VIRUS (STRAIN 193) 690-705 PCOAT_HEVS COAT PROTEIN HELENIUM VIRUS S 47-66 PCOAT_MEVA COAT PROTEIN VP1 MINK ENTERITIS VIRUS (STRAIN ABASHIRI) 685-700 PCOAT_MNSV COAT PROTEIN MELON NECROTIC SPOT VIRUS 37-53 PCOAT_MSTV COAT PROTEIN MAIZE STRIPE VIRUS 176-197 204-227 PCOAT_NMV COAT PROTEIN NARCISSUS MOSAIC VIRUS 67-86 PCOAT_NODAV COAT PROTEIN PRECURSOR NODAMURA VIRUS 379-394 PCOAT_ORSV COAT PROTEIN ODONTOGLOSSUM RINGSPOT VIRUS 104-130 PCOAT_OYMV COAT PROTEIN ONONIS YELLOW MOSAIC VIRUS 35-52 PCOAT_PAVC2 COAT PROTEIN VP2 CANINE PARVOVIRUS (TYPE 2/STRAIN A72) 547-562 PCOAT_PAVC7 COAT PROTEIN VP1 CANINE PARVOVIRUS (STRAIN 780929) 685-700 PCOAT_PAVCD COAT PROTEIN VP1 CANINE PARVOVIRUS (STRAIN CPV-D CORNELL 320) 700-715 PCOAT_PAVCN COAT PROTEIN VP1 CANINE PARVOVIRUS (STRAIN N) 711-726 PCOAT_PEMV COAT PROTEIN PRECURSOR PEPPER MOTTLE VIRUS 273-295 PCOAT_PMV COAT PROTEIN PAPAYA MOSAIC POTEXVIRUS  85-103 PCOAT_PPMVS COAT PROTEIN PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) 64-84 103-129 PCOAT_PVSP COAT PROTEIN POTATO VIRUS S (STRAIN PERUVIAN) 129-147 PCOAT_RSV COAT PROTEIN RICE STRIPE VIRUS 128-152 PCOAT_SMWLM COAT PROTEIN SATELLITE MAIZE WHITE LINE MOSAIC VIRUS 51-67 PCOAT_SMYEA COAT PROTEIN STRAWBERRY MILD YELLOW EDGE-ASSOCIATED 57-72 VIRUS PCOAT_TAMV GENOME POLYPROTEIN TAMARILLO MOSAIC VIRUS 222-237 PCOAT_TBSVB COAT PROTEIN TOMATO BUSHY STUNT VIRUS (STRAIN BS-3) 359-383 PCOAT_TCV COAT PROTEIN TURNIP CRINKLE VIRUS 73-89 PCOAT_TGMV COAT PROTEIN TOMATO GOLDEN MOSAIC VIRUS 154-177 PCOAT_TMGMV COAT PROTEIN TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 102-128 PCOAT_TMV COAT PROTEIN TOBACCO MOSAIC VIRUS (VULGARE) 102-128 PCOAT_TMV06 COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN 06) 102-128 PCOAT_TMVDA COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN DAHLEMENSE) 102-128 PCOAT_TMVER COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN ER) 102-128 PCOAT_TMVHR COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN HOLMES 102-128 RIBGRASS (HR)) PCOAT_TMVO COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN O) 102-128 PCOAT_TMVOM COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN OM) 102-128 PCOAT_TMVTO COAT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) 102-128 PCOAT_TNVA COAT PROTEIN TOBACCO NECROSIS VIRUS (STRAIN A) 119-142 PCOAT_TNVD COAT PROTEIN TOBACCO NECROSIS VIRUS (STRAIN D) 108-134 PCOLL_HSVSC COLLAGEN-LIKE PROTEIN HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 71-96 PCORA_HPBV2 CORE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW2)  79-100 PCORA_HPBVA CORE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ALPHA1) 15-31 PCORA_HPBVZ CORE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADYW)  79-100 PDNBI_ADE02 PROBABLE DNA-BINDING PROTEIN HUMAN ADENOVIRUS TYPE 2 71-93 PDNBI_EBV MAJOR DNA-BINDING PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 649-673 PDNBI_HCMVA MAJOR DNA-BINDING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 681-708 PDNBI_HSVI1 MAJOR DNA-BINDING PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 459-476 597-620 PDNBI_HSV1F MAJOR DNA-BINDING PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 459-476 597-620 PDNBI_HSV1K MAJOR DNA-BINDING PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 459-476 597-620 PDNBI_HSVB2 MAJOR DNA-BINDING PROTEIN BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) 455-472 596-616 PDNBI_HSVEB MAJOR DNA-BINDING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 810-831 PDNBI_HSVSA MAJOR DNA-BINDING PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 108-127 610-629 869-887  974- 1000 PDNBI_MCMVS MAJOR DNA-BINDING PROTEIN MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 657-684 PDNBI_SCMVC MAJOR DNA-BINDING PROTEIN SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN) 188-212 643-670 PDNLI_VARV DNA LIGASE VARIOLA VIRUS 269-294 PDPOL_ADE02 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 2 264-283 828-850 PDPOL_ADE05 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 5 264-283 828-850 PDPOL_ADE07 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 7 331-350 494-517 894-916 PDPOL_ADE12 DNA POLYMERASE HUMAN ADENOVIRUS TYPE 12 262-281 562-583 826-848 PDPOL_CBEPV DNA POLYMERASE CHORISTONEURA BIENNIS ENTOMOPOXVIRUS 430-454 654-678 732-757 PDPOL_CHVN2 DNA POLYMERASE CHLORELLA VIRUS NY-2A 424-442 PDPOL_CHVP1 DNA POLYMERASE PARAMECIUM BURSARIA CHLORELLA VIRUS 1 153-172 424-442 PDPOL_EBV DNA POLYMERASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 354-374 438-463 524-542 667-687 973-990 PDPOL_FOWPV DNA POLYMERASE FOWLPOX VIRUS 60-77 220-247 PDPOL_HCMVA DNA POLYMERASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 569-587 945-960 1029- 1053 PDPOL_HPBDB DNA POLYMERASE DUCK HEPATITIS B VIRUS (BROWN SHANGHAI  4-29 157-174 522-541 554-572 DUCK ISOLATE S5) PDPOL_HPBDC DNA POLYMERASE DUCK HEPATITIS B VIRUS (STRAIN CHINA)  4-29 157-174 521-540 553-571 PDPOL_HPBDU DNA POLYMERASE DUCK HEPATITIS B VIRUS 181-200 213-231 PDPOL_HPBDW DNA POLYMERASE DUCK HEPATITIS B VIRUS (WHITE SHANGHAI  4-29 157-174 522-541 554-572 DUCK ISOLATE S31) PDPOL_HPBGS DNA POLYMERASE GROUND SQUIRREL HEPATITIS VIRUS 448-475 PDPOL_HPBHE DNA POLYMERASE HERON HEPATITIS B VIRUS  4-29 554-572 PDPOL_HPBV2 DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW2) 412-439 447-463 761-780 PDPOL_HPBV4 DNA POLYMERASI HEPATITIS B VIRUS (SUBTYPE ADR4) 410-417 PDPOL_HPBV9 DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 991) 412-439 447-463 763-780 PDPOL_HPBVA DNA POLYMERASE HEPATITIS B VIRUS (STRAIN ALPHA1) 80-96 399-426 434-450 750-767 PDPOL_HPBVI DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 80-96 410-437 445-468 761-778 INDONESIA/PIDW420) PDPOL_HPBVJ DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 80-96 410-437 445-468 761-778 JAPAN/PJDW233) PDPOL_HPBVL DNA POLYMERASE HEPATITIS B VIRUS (STRAIN LSH/CHIMPANZEE 80-96 399-426 434-457 750-767 ISOLATE) PDPOL_HPBVM DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADR/MUTANT) 80-96 410-437 760-777 PDPOL_HPBVO DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 80-96 410-437 445-468 761-778 OKINAWA/PODW282) PDPOL_HPBVP DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 412-439 447-463 PHILIPPINO/PFDW294) PDPOL_HPBVR DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADR) 80-96 410-437 761-778 PDPOL_HPBVW DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADW) 82-98 405-432 440-456 PDPOL_HPBVY DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE AYW) 80-96 399-426 434-457 730-767 PDPOL_HPBVZ DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE ADYW) 80-96 399-426 434-457 PDPOL_HSVI1 DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 797-817 877-897 1073- 1090 PDPOL_HSV1A DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI) 797-817 877-897 1073- 1090 PDPOL_HSV1K DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 797-817 877-897 1073- 1090 PDPOL_HSV1S DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16) 797-817 877-897 1073- 1090 PDPOL_HSV2I DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 186) 802-822 882-902 1078- 1095 PDPOL_HSV6U DNA POLYMERASE HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 652-672 786-803 858-882 PDPOL_HSVEB DNA POLYMERASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 283-299 377-392 454-477 798-818 878-898 PDPOL_HSVI1 DNA POLYMERASE ICTALURID HERPESVIRUS 1 257-275 397-418 PDPOL_HSVSA DNA POLYMERASE HERPESVIRUS SAIMIRI (STRAIN 11) 118-137 297-319 344-364 514-532 955-972 PDPOL_MCMVS DNA POLYMERASE MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 303-322 535-553 780-802 PDPOL_NPVAC DNA POLYMERASE AUTOGRAPHA CALIFORNICA NUCLEAR 518-536 676-697 POLYHEDROSIS VIRUS PDPOL_VARV DNA POLYMERASE VARIOLA VIRUS 421-437 PDPOL_VZVD DNA POLYMERASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 312-331 363-382 440-463 713-740 757-781 1006- 1024 PDPOL_WHV1 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 1 446-473 PDPOL_WHV59 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 59 451-478 PDPOL_WHV7 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 7 451-478 POPOL_WHV8 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 450-477 554-571 PDPOL_WHV8I DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS 8 451-478 PDPOL_WHVW6 DNA POLYMERASE WOODCHUCK HEPATITIS VIRUS W64 (ISOLATE PWS23) 123-150 PDPOM_HPBVY DNA POLYMERASE HEPATITIS B VIRUS (SUBTYPE AYW) 399-426 434-450 750-767 PDUT_HCMVA DUTPASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 107-126 PDUT_HSVE4 DUTPASE EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 130-154 PDUT_HSVEB DUTPASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 130-149 PDUT_HSVI1 DUTPASE ICTALURID HERPESVIRUS 1 72-95 PDUT_HSVSA DUTPASE HERPESVIRUS SAIMIRI (STRAIN 11) 22-45  79-104 168-183 PE111_ADEM1 EARLY E1A 11 KD PROTEIN MOUSE ADENOVIRUS TYPE 1 24-47 PE1A6_ADE07 EARLY E1A 6 3 KD PROTEIN HUMAN ADENOVIRUS TYPE 7  8-35 PE1A_ADE04 EARLY E1A 28 KD PROTEIN HUMAN ADENOVIRUS TYPE 4 104-120 PE1A_ADE07 EARLY E1A 28 KD PROTEIN HUMAN ADENOVIRUS TYPE 7  8-35 PE1A_ADES7 EARLY E1A 28 KD PROTEIN SIMIAN ADENOVIRUS TYPE 7 173-189 238-254 PE1BL_ADE12 E1B PROTEIN, LARGE T-ANTIGEN HUMAN ADENOVIRUS TYPE 12 451-467 PE1BL_ADEC2 E1B PROTEIN, LARGE T-ANTIGEN CANINE ADENOVIRUS TYPE 2 101-122 PE1BL_ADENT EARLY E1B 44 KD PROTEIN TUPAIA ADENOVIRUS  75-101 PE1BS_ADEC2 E1B PROTEIN, SMALL T-ANTIGEN CANINE ADENOVIRUS TYPE 2 55-77 PE1BS_ADEM1 E1B PROTEIN, SMALL T-ANTIGEN MOUSE ADENO VIRUS TYPE 1 118-138 PE310_ADE02 EARLY E3B 10 4 KD PROTEIN PRECURSOR HUMAN ADENOVIRUS TYPE 2  3-21 34-60 PE310_ADE05 EARLY E3B 10 4 KD PROTEIN PRECURSOR HUMAN ADENOVIRUS TYPE 5  3-21 33-60 PE310_ADE07 EARLY E3B 10 4 KD PROTEIN PRECURSOR HUMAN ADENOVIRUS TYPE 7  3-24 PE311_ADE02 EARLY E3A 11 6 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 2 27-53 PE311_ADE03 EARLY E3 9 0 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 3 19-45 PE311_ADE05 EARLY E3A 10 5 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 5 20-46 PE311_ADE07 EARLY E3 7 7 KD PROTEIN HUMAN ADENOVIRUS TYPE 7 36-62 PE314_ADE05 EARLY E3 14 5 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 108-125 PE315_ADE03 EARLY E3B 14 5 KD PROTEIN PRECURSOR HUMAN ADENOVIRUS TYPE 3 52-72 PE315_ADE07 EARLY E3B 14 9 KD PROTEIN PRECURSOR HUMAN ADENOVIRUS TYPE 7 52-72 PE316_ADE03 EARLY E3 16 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 3 102-125 PE321_ADE03 EARLY E3 20 5 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 3 146-167 PE321_ADE07 EARLY E3 20 5 KD GLYCOPROTEIN HUMAN ADENOVIRUS TYPE 7 146-167 PE322_ADEC1 EARLY E3 22 2 KD GLYCOPROTEIN CANINE ADENOVIRUS TYPE 1 (STRAIN GLAXO) 155-177 PE3GL_ADEM1 EARLY E3 17 7 KD GLYCOPROTEIN MOUSE ADENOVIRUS TYPE 1 105-127 PE411_ADE02 PROBABLE EARLY E4 11 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 56-77 PE411_ADE05 PROBABLE EARLY E4 11 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 56-77 PE433_ADEM1 PROBABLE EARLY E4 33 KD PROTEIN MOUSE ADENOVIRUS TYPE 1 61-80 PE434_ADE02 EARLY E4 34 KD PROTEIN HUMAN ADENOVIRUS TYPE 2  80-106 PEAD_EBV EARLY ANTIGEN PROTEIN D EPSTEIN-BARR VIRUS (STRAIN B95-8) 263-286 PEAR_EBV EARLY ANTIGEN PROTEIN R EPSTEIN-BARR VIRUS (STRAIN B95-8) 159-184 PEBN2_EBV EBNA-2 NUCLEAR PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 126-141 PEBN3_EBV EBNA-3 NUCLEAR PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 113-131 662-683 PEFT1_VARV EARLY TRANSCRIPTION FACTOR VARIOLA VIRUS 21-41 70 KD SUBUNIT PENV1_FRSFV ENV POLYPROTEIN PRECURSOR FRIEND SPLEEN FOCUS-FORMING VIRUS 380-407 PENV2_FRSFV ENV POLYPROTEIN PRECURSOR FRIEND SPLEEN FOCUS-FORMING VIRUS 380-407 PENV_AVIR3 ENV POLYPROTEIN AVIAN RETROVIRUS RPL30 206-225 PENV_AVISU COAT PROTEIN GP37 AVIAN SARCOMA VIRUS (STRAIN UR2)  98-117 PENV_BAEVM ENV POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 170-190 202-224 PENV_BIV06 ENV POLYPROTEIN PRECURSOR BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) 47-68 178-201 434-450 525-546 PENV_BIV27 ENV POLYPROTEIN PRECURSOR BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) 47-68 147-168 207-230 463-479 554-575 PENV_BLVAF ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE FLK) 303-327 PENV_BLVAU ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) 303-327 PENV_BLVAV ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE VDM) 303-327 PENV_BLVB2 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB285) 303-327 PENV_BLVB5 ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB59) 303-327 PENV_BLVJ ENV POLYPROTEIN BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) 303-327 PENV_FENV1 ENV POLYPROTEIN PRECURSOR FELINE ENDOGENOUS VIRUS ECE1 30-47 225-246 630-651 PENV_FIVPE ENV POLYPROTEIN PRECURSOR FELINE ENDOGENOUS VIRUS ECE1 30-47 225-246 630-651 PENV_FLVC6 ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA PROVIRUS (CLONE CFE-6) 38-55 624-645 PENV_FLVGL ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1)  9-29 447-468 605-626 PENV_FLVLB ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1) 467-488 625-646 PENV_FLVSA ENV POLYPROTEIN PRECURSOR FELINE LEUKEMIA VIRUS (STRAIN SARMA) 444-465 602-623 PENV_FOAMV ENV POLYPROTEIN HUMAN SPUMARETROVIRUS (FOAMY VIRUS) 153-174 255-275 300-325 481-496 710-727 864-887 924-951 957-978 PENV_FSVGA ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN) 467-488 625-646 PENV_FSVGB ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN GA) 447-468 605-626 PENV_FSVSM ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN SM) 450-471 608-629 PENV_FSVST ENV POLYPROTEIN PRECURSOR FELINE SARCOMA VIRUS (STRAIN SNYDER-THEILEN) 467-488 PENV_GALV ENV POLYPROTEIN PRECURSOR GIBBON APE LEUKEMIA VIRUS 519-540 PENV_HV1B1 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 498-520 (BH10 ISOLATE) PENV_HV1B8 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 493-515 (BH8 ISOLATE) PENV_HV1BN GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 494-516 (BRAIN ISOLATE) PENV_HV1BR GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 503-525 (BRU ISOLATE) PENV_HV1C4 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 428-448 (CDC-451 ISOLATE) PENV_HV1EL GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 495-517 (ELI ISOLATE) PENV_HV1H2 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 498-520 (HXB2 ISOLATE) PENV_HV1H3 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 498-520 (HXB3 ISOLATE) PENV_HV1J3 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 510-532 (JH3 ISOLATE) PENV_HV1JR GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 490-512 (JRCSF ISOLATE) PENV_HV1KB GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 504-526 552-579 752-768 (STRAIN KB-1-GP32) PENV_HV1MA GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 500-522 (MAL ISOLATE) PENV_HV1MF GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 496-518 (MFA ISOLATE) PENV_HV1N5 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 178-203 (NEW YORK-5 ISOLATE) PENV_HV1ND GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 488-510 (NDK ISOLATE) PENV_HV1OY GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 123-140 (OYI ISOLATE) PENV_HV1PV GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 498-520 (PV22 ISOLATE) PENV_HV1RH GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 445-460 (RF/HAT ISOLATE) PENV_HV1S1 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 489-511 738-754 (SF162 ISOLATE) PENV_HV1S3 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 300-322 (SF33 ISOLATE) PENV_HV1Z2 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 123-145 410-427 495-517 (Z2/CDC-Z34 ISOLATE) PENV_HV1Z3 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 117-133 175-198 (ZAIRE 3 ISOLATE) PENV_HV1Z6 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 497-519 (ZAIRE 6 ISOLATE) PENV_HV1Z8 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 505-527 (Z-84 ISOLATE) PENV_HV1ZH GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 123-142 438-453 498-520 (ZAIRE HZ321 ISOLATE) PENV_HV2BE GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2  3-26 750-775 781-804 (ISOLATE BEN) PENV_HV2CA GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 750-777 (ISOLATE CMA2) PENV_HV2D1 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2  3-26 741-765 772-795 (ISOLATE D194) PENV_HV2D2 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2  9-28 (ISOLATE D205, 7) PENV_HV2G1 GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 741-766 772-795 (ISOLATE GHANA-1) PENV_HV2NZ GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 742-767 777-800 (ISOLATE NIH-Z) PENV_HV2RO GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 751-776 (ISOLATE ROD) PENV_HV2SB GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 743-768 778-804 (ISOLATE SBLISY) PENV_HV2ST GP160 PRECURSOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 745-770 (ISOLATE ST) PENV_JSRV ENV POLYPROTEIN PRECURSOR SHEEP PULMONARY ADENOMATOSIS VIRUS 104-119 299-325 376-398 541-568 PENV_MCFF ENV POLYPROTEIN PRECURSOR MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS 600-621 PENV_MCFF3 ENV POLYPROTEIN PRECURSOR MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS 601-622 (ISOLATE CI- PENV_MLVAV ENV POLYPROTEIN PRECURSOR AKV MURINE LEUKEMIA VIRUS 630-651 PENV_MLVCB ENV POLYPROTEIN PRECURSOR CAS-BR-E- MURINE LEUKEMIA VIRUS 625-646 PENV_MLVF5 ENV POLYPROTEIN PRECURSOR FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57) 639-660 PENV_MLVFF ENV POLYPROTEIN PRECURSOR FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29) 639-660 PENV_MLVFP ENV POLYPROTEIN PRECURSOR FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211) 639-660 PENV_MLVHO ENV POLYPROTEIN PRECURSOR HOMULV MURINE LEUKEMIA VIRUS (MUS 626-647 HORTULANUS VIRUS) PENV_MLVKI ENV POLYPROTEIN KIRSTEN MURINE LEUKEMIA VIRUS 167-188 PENV_MLVMO ENV POLYPROTEIN PRECURSOR MOLONEY MURINE LEUKEMIA VIRUS 629-650 PENV_MLVRD ENV POLYPROTEIN PRECURSOR RADIATION MURINE LEUKEMIA VIRUS 624-645 PENV_MLVRK ENV POLYPROTEIN PRECURSOR RADIATION MURINE LEUKEMIA VIRUS 624-645 (STRAIN KAPLAN) PENV_MMTVB ENV POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 643-663 PENV_MMTVG ENV POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 643-663 PENV_MPMV ENV POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 213-235 PENV_MSVFB ENV POLYPROTEIN FBJ MURINE OSTEOSARCOMA VIRUS 170-191 PENV_OMVVS ENV POLYPROTEIN PRECURSOR OVINE LENTIVIRUS (STRAIN SA-OMVV) 658-683 PENV_RMCFV ENV POLYPROTEIN PRECURSOR RAUSCHER MINK CELL FOCUS-INDUCING VIRUS 603-624 PENV_RSVP ENV POLYPROTEIN ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 42-69 533-552 PENV_SFV1 ENV POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1) 300-325 710-727 864-887 924-951 957-978 PENV_SFV3L ENV POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 157-178 304-329 707-724 861-884 921-948 954-975 PENV_SIVA1 GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 437-458 PENV_SIVAG GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 442-463 PENV_SIVA1 GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/ 421-442 CLONE GRI-1) PENV_SIVAT GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 435-456 PENV_SIVGB GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)  93-109 PENV_SIVM1 GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) 766-793 803-826 PENV_SIVMK GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 139-154 765-792 802-825 PENV_SIVML GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE) 139-154 764-791 801-824 PENV_SIVS4 GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS 769-789 806-829 (F236/SMH4 ISOLATE) PENV_SIVSP GP160 PRECURSOR SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) 773-793 810-833 PENV_SMSAV P15E PROTEIN SIMIAN SARCOMA VIRUS 42-63 PENV_SRV1 ENV POLYPROTEIN SIMIAN RETROVIRUS SRV-1 213-235 PERBA_AVIER ERBA ONCOGENE PROTEIN AVIAN ERYTHROBLASTOSIS VIRUS (STRAIN ES4) 227-249 PETF1_FOWP1 EARLY TRANSCRIPTION FACTOR FOWLPOX VIRUS (STRAIN FP-1) 21-41 73-92 PETF1_SFVKA EARLY TRANSCRIPTION FACTOR SHOPE FIBROMA VIRUS (STRAIN KASZA) 21-41 PETF1_VACCC EARLY TRANSCRIPTION FACTOR VACCINIA VIRUS (STRAIN COPENHAGEN) 21-41 PETF1_VACCV EARLY TRANSCRIPTION FACTOR VACCINIA VIRUS (STRAIN WR) 21-41 PETF2_VACCC EARLY TRANSCRIPTION FACTOR VACCINIA VIRUS (STRAIN COPENHAGEN) 50-73 101-117 165-187 285-308 558-582 82 KD SUBUNIT PETF2_VACCV EARLY TRANSCRIPTION FACTOR VACCINIA VIRUS (STRAIN WR) 48-72 82 KD SUBUNIT PETF2_VARV EARLY TRANSCRIPTION FACTOR VARIOLA VIRUS 50-73 101-117 165-187 285-308 558-582 82 KD SUBUNIT PEXON_HSV11 ALKALINE EXONUCLEASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 165-180 PEXON_HSV2 ALKALINE EXONUCLEASE HERPES SIMPLEX VIRUS (TYPE 2) 155-170 PEXON_HSVEB ALKALINE EXONUCLEASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 276-291 PEXON_PRVN3 ALKALINE EXONUCLEASE PSEUDORABIES VIRUS (STRAIN NIA-3) 36-51 PEXON_VZVD ALKALINE EXONUCLEASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 28-44 237-262 PFIB2_ADE40 41 4 KD FIBER PROTEIN HUMAN ADENOVIRUS TYPE 40 116-133 PFIB2_ADE41 41 4 KD FIBER PROTEIN HUMAN ADENOVIRUS TYPE 41 116-133 PFIBP_ADE03 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 3 152-173 PFIBP_ADE05 FIBER PROTEIN HUMAN ADENOVIRUS TYPE 5 447-473 PFIBP_ADEB3 FIBER PROTEIN BOVINE ADENOVIRUS TYPE 3 (MASTADENOVIRUS BOS3) 347-372 775-801 PFIBP_ADEC1 FIBER PROTEIN CANINE ADENOVIRUS TYPE 1 (STRAIN GLAXO) 382-397 PFIBP_ADEM1 FIBER PROTEIN MOUSE ADENOVIRUS TYPE 1 191-215 227-252 493-513 548-576 579-599 PGAG_AVEV1 GAG POLYPROTEIN AVIAN ENDOGENOUS VIRUS EV-1 53-78 PGAG_AVEV2 GAG POLYPROTEIN AVIAN ENDOGENOUS ROUS-ASSOCIATED VIRUS-0  2-27 PGAG_AVIMC GAG POLYPROTEIN AVIAN MYELOCYTOMATOSIS VIRUS MC29 53-78 PGAG_AVIMD GAG POLYPROTEIN AVIAN MYELOCYTOMATOSIS VIRUS HB1 53-78 PGAG_AVISU CORE PROTEIN P19 AVIAN SARCOMA VIRUS (STRAIN UR2) 53-78 PGAG_AVISY GAG POLYPROTEIN AVIAN SARCOMA VIRUS (STRAIN Y73) 53-78 PGAG_BAEVM GAG POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 397-422 PGAG_BLVAU GAG POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) 212-238 PGAG_BLVJ GAG POLYPROTEIN BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) 213-239 PGAG_CAEVC GAG POLYPROTEIN CAPRINE ARTHRITIS ENCEPHALITIS VIRUS 102-119 (STRAIN CORK) PGAG_FUJSV GAG POLYPROTEIN FUJINAMI SARCOMA VIRUS 53-78 PGAG_HTL1A GAG POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK) 77-94 PGAG_HTL1C GAG POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 77-94 (CARIBBEAN ISOLATE) PGAG_HTL1M GAG POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 77-94 (ISOLATE MT-2) PGAG_HV1A2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (ARV2/SF2 ISOLATE) PGAG_HV1B1 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (BH10 ISOLATE) PGAG_HV1B5 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (BH5 ISOLATE) PGAG_HV1BR GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (BRU ISOLATE) PGAG_HV1C4 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (CDC-451 ISOLATE) PGAG_HV1EL GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (ELI ISOLATE) PGAG_HV1H2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (HXB2 ISOLATE) PGAG_HV1J3 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (JH3 ISOLATE) PGAG_HV1JR GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (JRCSF ISOLATE) PGAG_HV1MA GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 262-285 (MAL ISOLATE) PGAG_HV1MN GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (MN ISOLATE) PGAG_HV1N5 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (NEW YORK-5 ISOLATE) PGAG_HV1ND GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 352-373 (NDK ISOLATE) PGAG_HV1OY GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (OYI ISOLATE) PGAG_HV1PV GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (PV22 ISOLATE) PGAG_HV1RH GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (RF/HAT ISOLATE) PGAG_HV1U4 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (STRAIN UGANDAN/ISO PGAG_HV1W2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (WMJ2 ISOLATE) PGAG_HV1Z2 GAG POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 65-91 (Z2/CDC-Z34 ISOLATE) PGAG_IPMA RETROVIRUS-RELATED GAG POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 757-772 PGAG_MMTVB GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 82-97 PGAG_MMTVC GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H) 82-97 PGAG_MMTVG GAG POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 82-97 PGAG_RSVP GAG POLYPROTEIN ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 53-78 PGAG_SCVLA MAJOR COAT PROTEIN SACCHAROMYCES CEREVISIAE VIRUS L-A 618-645 PGAG_SFV1 GAG POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1)  85-103 PGAG_SFV3L GAG POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)  83-101 PGAG_SIVA1 GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 189-213 PGAG_SIVAG GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 193-217 PGAG_SIVAT GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 189-213 PGAG_SIVCZ GAG POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) 66-92 PGAG_SIVGB GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 66-92 PGAG_SIVM1 GAG POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) PGAG_SMRVH GAG POLYPROTEIN SQUIRREL MONKEY RETROVIRUS (SMRV-H) 286-307 PGLRX_VACCC POSSIBLE GLUTAREDOXIN VACCINIA VIRUS (STRAIN COPENHAGEN), AND 71-87 (STRAIN L-IVP) PGLRX_VARV POSSIBLE GLUTAREDOXIN VARIOLA VIRUS 71-87 PGRAN_GVAS GRANULIN AGROTIS SEGETUM GRANULOSIS VIRUS 208-226 PGRAN_GVTN GRANULIN TRICHOPLUSIA NI GRANULOSIS VIRUS 209-227 PGRFA_VACCC GROWTH FACTOR VACCINIA VIRUS (STRAIN COPENHAGEN) 104-124 PGRFA_VACCV GROWTH FACTOR VACCINIA VIRUS (STRAIN WR) 104-123 PGRFA_VARV GROWTH FACTOR VARIOLA VIRUS 104-122 PHELI_EBV PROBABLE HELICASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 180-207 338-361 438-464 PHELI_HCMVA PROBABLE HELICASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 397-420 539-560 826-852 PHELI_HSV11 PROBABLE HELICASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 389-408 628-646 PHELI_HSV2H PROBABLE HELICASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 290-309 529-554 PHELI_HSVEB PROBABLE HELICASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 181-204 243-266 394-413 PHELI_HSVSA PROBABLE HELICASE HERPESVIRUS SAIMIRI (STRAIN 11) 327-350 389-411 658-683 PHELI_VZVD PROBABLE HELICASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 165-189 383-402 561-578 761-786 PHEMA_CDVO HEMAGGLUTININ-NEURAMINIDASE CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 36-53 200-223 PHEMA_CVBF HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN F15) 391-415 PHEMA_CVBLY HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN LY-138) 391-415 PHEMA_CVBM HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN MEBUS) 391-415 PHEMA_CVBQ HEMAGGLUTININ-ESTERASE PRECURSOR BOVINE CORONAVIRUS (STRAIN QUEBEC), AND 391-415 (STRAIN L9) PHEMA_CVHOC HEMAGGLUTININ-ESTERASE PRECURSOR HUMAN CORONAVIRUS (STRAIN OC43) 391-415 PHEMA_CVMA5 HEMAGGLUTININ-ESTERASE PRECURSOR MURINE CORONAVIRUS MHV (STRAIN A59) 402-423 PHEMA_CVMS HEMAGGLUTININ-ESTERASE PRECURSOR MURINE CORONAVIRUS MHV (STRAIN S) 403-418 PHEMA_IAAIC HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/AICHI/2/68) 37-59 322-339 PHEMA_IABAN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79) 21-43 306-323 PHEMA_IABUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/ 320-337 HOKKAIDO/1/77) PHEMA_IACKA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/ 320-337 ALABAMA/1/75) PHEMA_IACKG HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/  81-101 231-247 316-333 GERMANY/N/49) PHEMA_IACKP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/ 302-319 PENNSYLVANIA/1/83) PHEMA_IACKQ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/ 302-319 PENNSYLVANIA/1370/83) PHEMA_IACKS HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/SCOTLAND/59) 319-336 PHEMA_IACKV HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/CHICKEN/VICTORIA/1/85) 230-246 315-332 PHEMA_IADA1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76) 320-337 PHEMA_IADA3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/78/76) 37-59 322-339 PHEMA_IADCZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ 320-337 CZECHOSLOVAKIA/56) PHEMA_IADE1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 266-287 319-336 PHEMA_IADH1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/5/77) 306-323 PHEMA_IADH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 21-43 306-323 PHEMA_IADH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/33/80) 21-43 306-323 PHEMA_IADH4 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/7/82) 21-43 306-323 PHEMA_IADH5 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/21/82) 21-43 215-237 PHEMA_IADH6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/9/85) 21-43 306-323 PHEMA_IADH7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/10/85) 21-43 306-323 PHEMA_IADM2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74) 37-59 322-339 PHEMA_IADMA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53) 28-50  81-101 PHEMA_IADNZ HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/ 320-337 NEW ZEALAND/31/76) PHEMA_IADU3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 37-59 322-339 PHEMA_IAEN6 HEMAGGLUTININ INFLUENZA A VIRUS (STRAIN A/ENGLAND/878/69) 21-43 306-323 PHEMA_IAEN7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77) 37-59 322-339 PHEMA_IAFPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 230-246 315-332 ROSTOCK/34) PHEMA_IAGRE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GREY TEAL/ 320-337 AUSTRALIA/2/79) PHEMA_IAGU2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GULL/ 320-337 MARYLAND/704/77) PHEMA_IAGUA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/GULL/ 319-336 ASTRAKHAN/227/84) PHEMA_IAHAL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ALGIERS/72) 321-338 PHEMA_IAHC6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 230-246 315-332 CAMBRIDGE/1/63) PHEMA_IAHC7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 230-246 315-332 CAMBRIDGE/1/73) PHEMA_IAHCD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/C DETROIT/1/64) 230-246 315-332 PHEMA_IAHDE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/DETROIT/1/64) 230-246 315-332 PHEMA_IAHFO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 236-252 321-338 FONTAINEBLEAU/76) PHEMA_IAHK6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/86) 321-338 PHEMA_IAHK7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/87) 236-252 321-338 PHEMA_IAHLE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 230-246 315-332 LEXINGTON/1/66) PHEMA_IAHLO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 230-246 315-332 LONDON/1416/73) PHEMA_IAHMI HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63) 236-252 321-338 PHEMA_IAHNM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 236-252 321-338 NEW MARKET/76) PHEMA_IAHNN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 315-332 NEW MARKET/1/77) PHEMA_IAHPR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 315-332 PHEMA_IAHRO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ROMANIA/80) 236-252 321-338 PHEMA_IAHSA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SANTIAGO/1/85) 236-252 321-338 PHEMA_IAHSP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/SAO PAULO/1/76) 230-246 315-332 PHEMA_IAHSW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/ 230-246 315-332 SWITZERLAND/137/72) PHEMA_IAHTE HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 236-252 321-338 PHEMA_IAHTO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/TOKYO/71) 236-252 321-338 PHEMA_IAHUR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/EQUINE/URUGUA/1/63) 236-252 321-338 PHEMA_IAJAP HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57) 317-334 PHEMA_IAMAA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/ 197-223 319-336 ASTRAKHAN/244/82) PHEMA_IAMAB HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/ 202-228 324-341 ASTRAKHAN/263/82) PHEMA_IAMAO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MALLARD/ 37-59 322-339 NEW YORK/6874/78) PHEMA_IAME1 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71) 37-59 322-339 PHEMA_IAME2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/102/72) 37-59 322-339 PHEMA_IAME6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86) 21-43 306-323 PHEMA_IAMIN HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)  85-101 231-247 316-333 PHEMA_IANT6 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/NT/60/68) 37-59 322-339 PHEMA_IAPIL HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/PILOT WHALE/ 320-337 MAINE/328/84) PHEMA_IAQU7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/QU/7/70) 21-43 306-323 PHEMA_IARUD HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/ 320-337 NEW JERSEY/47/ PHEMA_IASE2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SEAL/ 320-337 MASSACHUSETTS/133/82) PHEMA_IASH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SHEARWATER/ 234-250 321-338 AUSTRALIA/72) PHEMA_IASTA HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/STARLING/ 230-246 315-332 VICTORIA/5156/85) PHEMA_IATKM HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 33-55 320-337 MINNESOTA/833/80) PHEMA_IATKO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 233-249 ONTARIO/7732/66) PHEMA_IATKR HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 230-246 PHEMA_IATKW HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/TURKEY/ 229-245 WISCONSIN/1/66) PHEMA_IAUDO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 37-59 322-339 380-397 PHEMA_IAVI7 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 38-60 323-340 PHEMA_IAX31 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN X-31) 37-59 PHEMA_IAZCO HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/COLORADO/1/77) 37-59 322-339 PHEMA_IAZH2 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/ 21-43 306-323 HONG KONG/81/78) PHEMA_IAZH3 HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/ 21-43 306-323 HONG KONG/126/82) PHEMA_IAZUK HEMAGGLUTININ PRECURSOR INFLUENZA A VIRUS (STRAIN A/SWINE/UKKEL/1/84) 37-59 322-339 PHEMA_INBAA HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/86) 115-131 295-310 PHEMA_INBBE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87) 123-139 303-318 PHEMA_INBBO HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/BONN/43) 116-132 293-308 PHEMA_INBEN HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82) 123-139 301-316 PHEMA_INBFU HEMAGGLUTININ INFLUENZA B VIRUS (STRAIN B/FUKUOKA/80/81) 108-124 286-301 PHEMA_INBGL HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/GL/54) 119-135 296-311 PHEMA_INBHK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73) 116-132 293-308 PHEMA_INBIB HEMAGGLUTININ INFLUENZA B VIRUS (STRAIN B/BARAKI/2/85) 108-124 288-303 PHEMA_INBID HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/ID/86) 120-136 299-314 PHEMA_INBLE HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/LEE/40) 123-139 302-317 PHEMA_INBMD HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 113-129 292-307 PHEMA_INBME HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86) 116-132 296-311 PHEMA_INBNA HEMAGGLUTININ INFLUENZA B VIRUS (STRAIN B/NAGASAKI/1/87) 108-124 288-303 PHEMA_INBOR HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/OREGON/5/80) 123-139 301-316 PHEMA_INBSI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 123-139 301-316 PHEMA_INBSJ HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/SINGAPORE/64) 119-135 298-313 PHEMA_INBUS HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/USSR/100/83) 116-132 294-309 PHEMA_INBVI HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85) 116-132 296-311 PHEMA_INBVK HEMAGGLUTININ PRECURSOR INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87) 123-139 303-318 PHEMA_INBYB HEMAGGLUTININ INFLUENZA B VIRUS (STRAIN B/YAMAGATA/16/88) 108-124 286-301 PHEMA_INCCA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 442-466 PHEMA_INCEN HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83) 430-454 PHEMA_INCGL HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54) 430-454 PHEMA_INCHY HEMAGGLUTININ INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83) 429-453 PHEMA_INCJH HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66) 443-467 PHEMA_INCKY HEMAGGLUTININ INFLUENZA C VIRUS (STRAIN C/KYOTO/41/82) 429-453 PHEMA_INCMI HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80) 429-453 PHEMA_INCNA HEMAGGLUTININ INFLUENZA C VIRUS (STRAIN C/NARA/82) 429-453 PHEMA_INCP1 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81) 430-454 PHEMA_INCP2 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81) 430-454 PHEMA_INCP3 HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82) 430-454 PHEMA_INCTA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47) 430-454 PHEMA_INCYA HEMAGGLUTININ PRECURSOR INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81) 430-454 PHEMA_MUMP1 HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN SBL-1) 101-125 133-148 225-246 367-394 397-417 PHEMA_MUMPM HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 101-125 133-148 225-246 367-394 397-417 PHEMA_MUMPR HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN RW) 101-125 133-148 225-246 367-394 397-417 PHEMA_MUMPS HEMAGGLUTININ-NEURAMINIDASE MUMPS VIRUS (STRAIN SBL) 101-125 133-148 PHEMA_NDVA HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN  93-110 AUSTRALIA-VICTORIA/32) PHEMA_NDVB HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)  93-110 PHEMA_NDVD HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN D26/76)  93-110 PHEMA_NDVH4 HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47)  93-110 PHEMA_NDVI HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)  93-110 PHEMA_NDVM HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)  93-110 PHEMA_NDVQ HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)  93-110 PHEMA_NDVTG HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G B/48)  93-110 PHEMA_NDVU HEMAGGLUTININ-NEURAMINIDASE NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)  93-110 PHEMA_PHODV HEMAGGLUTININ-NEURAMINIDASE PHOCINE DISTEMPER VIRUS 36-58 213-234 493-513 PHEMA_PI1HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 1 VIRUS (STRAIN 29-53 322-342 345-360 486-503 WASHINGTON/1957) PHEMA_PI2H HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 2 VIRUS (PIV-2) 13-40 65-88 118-136 PHEMA_PI2HT HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 13-40 65-88 118-136 PHEMA_PI3B HEMAGGLUTININ-NEURAMINIDASE BOVINE PARAINFLUENZA 3 VIRIS 111-128 272-299 324-340 PHEMA_PI3H4 HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 111-128 272-299 324-340 PHEMA_PI3HA HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN 111-128 272-299 324-340 AUS/124854/74) PHEMA_PI3HT HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/545/80) 111-128 272-299 324-340 PHEMA PI3HU HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/9305/82) 111-128 272-299 324-340 PHEMA_PI3HV HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/12677/83) 111-128 272-299 324-340 PHEMA_PI3HW HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/641/79) 111-128 272-299 324-340 PHEMA_PI3HX HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/ 111-128 272-299 324-340 1511/73) PHEMA_PI4HA HEMAGGLUTININ-NEURAMINIDASE HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 50-67 PHEMA_RINDK HEMAGGLUTININ-NEURAMINIDASE RINDERPEST VIRUS (STRAIN KABETE O) 368-383 PHEMA_RINDL HEMAGGLUTININ-NEURAMINIDASE RINDERPEST VIRUS (STRAIN L)  4-30 PHEMA_SEND5 HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 322-342 PHEMA_SENDF HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN FUSHIMI) 322-342 PHEMA_SENDH HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN HARRIS) 322-342 PHEMA_SENDJ HEMAGGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN HVJ) 322-342 PHEMA_SENDZ HEMAOGLUTININ-NEURAMINIDASE SENDAI VIRUS (STRAIN Z) 322-342 PHEMA_SV41 HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 41 55-73  85-102 107-132 PHEMA_SV5 HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 5 (STRAIN W3)  7-28  84-101 379-400 PHEMA_SV5CM HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 5 (ISOLATE CANINE/CPI−)  7-28  84-101 379-400 PHEMA_SV5CP HEMAGGLUTININ-NEURAMINIDASE SIMIAN VIRUS 5 (ISOLATE CANINE/CPI+)  7-28  84-101 379-400 PHEMA_SV5LN HEMAGGLUTININ-NEURAMINIDASE  7-28  84-101 379-400 PHEMA_VACCC HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 173-192 PHEMA_VACCI HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN IHD-J) 173-192 PHEMA_VACCT HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN TIAN TAN) 173-192 PHEMA_VACCV HEMAGGLUTININ PRECURSOR VACCINIA VIRUS (STRAIN WR) 173-192 PHEMA_VARV HEMAGGLUTININ PRECURSOR VARIOLA VIRUS 175-194 PHEX8_ADE02 HEXON-ASSOCIATED PROTEIN PRECUSOR HUMAN ADENOVIRUS TYPE 2 38-61 119-140 PHEX8_ADE03 HEXON-ASSOCIATED PROTEIN PRECUSOR HUMAN ADENOVIRUS TYPE 3 27-48 PHEX8_ADE05 HEXON-ASSOCIATED PROTEIN PRECUSOR HUMAN ADENOVIRUS TYPE 5 38-61 119-140 PHEX8_ADE41 HEXON-ASSOCIATED PROTEIN PRECUSOR HUMAN ADENOVIRUS TYPE 41 38-61 128-146 PHEX8_ADEM1 HEXON-ASSOCIATED PROTEIN PRECUSOR MOUSE ADENOVIRUS TYPE 1 36-52 PHEX9_ADE07 HEXON-ASSOCIATED PROTEIN HUMAN ADENOVIRUS TYPE 7, AND 3  92-117 PHEX9_ADEC2 HEXON-ASSOCIATED PROTEIN CANINE ADENOVIRUS TYPE 2 52-77 PHEX9_ADENT HEXON-ASSOCIATED PROTEIN TUPAIA ADENOVIRUS 60-82 PHRG_COWPX HOST RANGE PROTEIN COWPOX VIRUS 517-533 558-583 609-636 PI177_ASFB7 LATE PROTEIN I177L AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 68-83 PI196_ASFB7 LATE PROTEIN I196L AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 169-190 PI226_ASFB7 LATE PROTEIN I226R AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 60-77 PI329_ASFB7 LATE PROTEIN I329L PRECURSOR AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 239-260 PI78_ASFB7 EARLY PROTEIN I78R AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)  2-29 PIBMP_SOCMV INCLUSION BODY MATRIX PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS  97-119 PIC18_EBV PROBABLE PROCESSING AND TRANSPORT EPSTEIN-BARR VIRUS (STRAIN B95-8) 101-123 131-153 759-777 PROTEIN PIC18_HCMVA PROBABLE PROCESSING AND TRANSPORT HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 156-176 202-222 PROTEIN PIC18_HSVI1 PROCESSING AND TRANSPORT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  8-29 45-61 122-143 751-768 PIC18_HSV1A PROCESSING AND TRANSPORT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI)  8-29 45-61 122-143 751-768 PIC18_HSV1F PROCESSING AND TRANSPORT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)  8-29 122-143 746-763 PIC18_HSVB2 PROBABLE PROCESSING AND TRANSPORT BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) 12-37 130-151 PROTEIN PIC18_HSVEB PROBABLE PROCESSING AND TRANSPORT EQUINE HERPESVIRUS TYPE 1 37-56 129-144 732-755 PROTEIN PIC18_HSVSA PROBABLE PROCESSING AND TRANSPORT HERPESVIRUS SAIMIRI (STRAIN 11) 27-49 51-78 647-672 PROTEIN PIC18_MCMVS PROBABLE PROCESSING AND TRANSPORT MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 126-144 202-229 386-411 PROTEIN PIC18_PRVIF PROBABLE PROCESSING AND TRANSPORT PSEUDORABIES VIRUS (STRAIN 285-307 698-718 PROTEIN INDIANA-FUNKHAUSER/BECKER) PIC18_VZVD PROBABLE PROCESSING AND TRANSPORT VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 69-88 619-639 725-744 PROTEIN PICP0_HSVI1 IMMEDIATE-EARLY PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 668-684 PICP0_HSV2H VMW118 PROTEIN HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 713-729 PICP0_PRVIF EARLY PROTEIN 0 PSEUDORABIES VIRUS (STRAIN  82-102 INDIANA-FUNKHAUSER/BECKER) PICP3_HSV1F INFECTED CELL PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 211-227 PICP4_HSVI1 TRANS-ACTING TRANSCRIPTIONAL PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 81-98 621-637 PICP4_HSVEB TRANS-ACTING TRANSCRIPTIONAL PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 708-725 736-759 PICP4_HSVEK TRANS-ACTING TRANSCRIPTIONAL PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 708-725 736-759 PICP4_HSVMG TRANS-ACTING TRANSACTIVATOR PROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN GA) 488-506 585-611 1202- 1218 PICP4_VZVD TRANS-ACTING TRANSCRIPTIONAL PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 547-563 PIE18_PRVIF IMMEDIATE-EARLY PROTEIN IE180 PSEUDORABIES VIRUS (STRAIN 731-748 INDIANA-FUNKHAUSER/BECKER) PIE18_PRVKA IMMEDIATE-EARLY PROTEIN IE180 PSEUDORABIES VIRUS (STRAIN KAPLAN) 720-737 PIE63_HCMVA TRANSCRIPTIONAL REGULATOR IE63 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 286-304 364-383 HOMOLOG ( PIE63_HSVI1 TRANSCRIPTIONAL REGULATOR IE63 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 378-394 PIE63_HSV2H TRANSCRIPTIONAL REGULATOR IE63 HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 378-394 PIE63_HSVEB TRANSCRIPTIONAL REGULATOR IE63 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 337-353 385-406 HOMOLOG PIE63_HSVSA 52 KD IMMEDIATE-EARLY HERPESVIRUS SAIMIRI (STRAIN 11) 301-326 PHOSPHOPROTEIN PIE68_HSVI1 IMMEDIATE-EARLY PROTEIN IE68 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 189-205 PIE68_HSVE4 IMMEDIATE-EARLY PROTEIN IE68 EQUINE HERPESVIRUS TYPE 4  81-104 PIE68_HSVEB IMMEDIATE-EARLY PROTEIN EQUINE HERPESVIRUS TYPE 1  93-116 PIE68_PRVKA IMMEDIATE-EARLY PROTEIN PSEUDORABIES VIRUS (STRAIN KAPLAN)  85-108 PIE68_VZVD GENE 63/70 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 57-78 PIR14_HCMVA HYPOTHETICAL PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 117-137 PKERB_AVIER ERBB TYROSINE KINASE TRANSFORMING AVAIN ERYTHROBLASTOSIS VIRUS 64-84 297-324 PROTEIN PKFES_FSVGA TYROSINE-PROTEIN KINASE FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN) 73-88 TRANSFORMING PROT PKFES_FSVST TYROSINE-PROTEIN KINASE FELINE SARCOMA VIRUS (STRAIN SNYDER-THEILEN)  2-22 TRANSFORMING PROT PKFGR_FSVGR TYROSINE-PROTEIN KINASE FELINE SARCOMA VIRUS (STRAIN GARDNER-RASHEED) 269-288 TRANSFORMING PROT PKFMS_FSVMD FMS TYROSINE KINASE FELINE SARCOMA VIRUS (STRAIN MCDONOUGH) 141-159 243-263 434-450 548-563 781-801 856-877 TRANSFORMING PROTEIN PKFPS_AVISP TYROSINE-PROTEIN KINASE FELINE SARCOMA VIRUS (STRAIN PRC1I) 247-274 TRANSFORMING PROT PKFPS_FUJSV TYROSINE-PROTEIN KINASE FUJINAMI SARCOMA VIRUS 259-275 346-370 400-420 587-614 TRANSFORMING PROT PKITH_ASFB7 THYMIDINE KINASE AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 18-41 PKITH_EBV THYMIDINE KINASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 403-418 428-446 PKITH_FLDV THYMIDINE KINASE FISH LYMPHOCYSTIS DISEASE VIRUS  96-117 252-275 PKITH_HSVI1 THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 223-249 PKITH_HSV1C THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN CL101) 223-249 PKITH_HSV1E THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM) 223-249 PKITH_HSV1K THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 223-249 PKITH_HSV1S THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16) 223-249 PKITH_HSV23 THYMIDINE KINASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 224-250 333-348 PKITH_HSVB6 THYMIDINE KINASE BOVINE HERPESVIRUS TYPE 1 (STRAIN 6660) 193-219 280-304 PKITH_HSVBH THYMIDINE KINASE BOVINE HERPESVIRUS TYPE 2 (STRAIN BHM-1) 180-202 PKITH_HSVBM THYMIDINE KINASE BOVINE HERPESVIRUS TYPE 3 (STRAIN WC11) 381-399 609-633 PKITH_HSVBQ THYMIDINE KINASE BOVINE HERPESVIRUS TYPE 1 2 (STRAIN Q3932) 194-220 282-306 PKITH_HSVE4 THYMIDINE KINASE EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 174-193 261-284 PKITH_HSVEB THYMIDINE KINASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND 18-33 174-193 274-298 (ISOLATE HVS25A) PKITH_HSVF THYMIDINE KINASE FELINE HERPESVIRUS (FELID HERPES VIRUS 1) 171-189 PKITH_HSVI1 THYMIDINE KINASE ICTALURID HERPESVIRUS 1 14-32 PKITH_HSVMR THYMIDINE KINASE MARMOSET HERPESVIRUS 189-215 PKITH_HSVSA THYMIDINE KINASE HERPESVIRUS SAIMIRI (STRAIN 11) 208-232 PKITH_ILTVT THYMIDINE KINASE INFECTIOUS LARYNGOTRACHEITIS VIRUS 183-202 208-234 (STRAIN THORNE V882) PKITH_VZV4 THYMIDINE KINASE VARICELLA-ZOSTER VIRUS (ACYCLOVIR- 197-216 RESISTANT STRAIN 40A2) PKITH_VZV7 THYMIDINE KINASE VARICELLA-ZOSTER VIRUS (ACYCLOVIR- 197-216 RESISTANT STRAIN 7-1-3) PKITH_VZVD THYMIDINE KINASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 197-216 PKITH_VZVG THYMIDINE KINASE VARICELLA-ZOSTER VIRUS (ACYCLOVIR- 197-216 RESISTANT STRAIN GK) PKITH_VZVW THYMIDINE KINASE VARICELLA-ZOSTER VIRUS (VZV) 197-216 PKKIT_FSVHZ KIT TYROSINE KINASE TRANSFORMING FELINE SARCOMA VIRUS (STRAIN 192-214 276-297 PROTEIN HARDY-ZUCKERMAN 4) PKR15_HSVI1 GENE 15 PROTEIN KINASE ICTALURID HERPESVIRUS 1 151-167 358-374 PKR16_HSVI1 GENE 16 PROTEIN KINASE ICTALURID HERPESVIRUS 1 197-217 286-311 PKR1_HSVI1 SERINE/THREONINE-PROTEIN KINASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 280-296 338-377 PKR1_HSV2 SERINE/THREONINE-PROTEIN KINASE HERPES SIMPLEX VIRUS (TYPE 2) 276-296 358-377 PKR1_HSVEB SERINE/THREONINE-PROTEIN KINASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 289-307 PKR1_HSVEK SERINE/THREONINE-PROTEIN KINASE EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 289-307 PKR1_VZVD SERINE/THREONINE-PROTEIN KINASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 179-197 PKR2_EBV PROBABLE SERINE/THREONINE-PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 196-211 313-338 KINASE PKR2_HSV11 PROBABLE SERINE/THREONINE-PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 247-267 KINASE PKR2_HSVEB PROBABLE SERINE/THREONINE-PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 317-339 441-462 KINASE PKR2_PRVN3 SERINE/THREONINE-PROTEIN KINASE 2 PSEUDORABIES VIRUS (STRAIN NIA-3) 164-185 282-305 PKR2_VZVD PROBABLE SERINE/THREONINE- VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 116-131 226-247 354-373 PROTEIN KINASE PKR73_HSVI1 GENE 73 PROTEIN KINASE ICTALURID HERPESVIRUS 1 841-858 PKR74_HSVI1 GENE 74 PROTEIN KINASE ICTALURID HERPESVIRUS 1 359-380 548-575 PKRB1_VACCC 30 KD PROTEIN KINASE HOMOLOG VACCINIA VIRUS (STRAIN COPENHAGEN) 199-214 PKRB1_VACCV 30 KD PROTEIN KINASE HOMOLOG VACCINIA VIRUS (STRAIN WR) 199-214 PKRB1_VARV 30 KD PROTEIN KINASE HOMOLOG VARIOLA VIRUS 199-214 PKRF1_SFVKA POSSIBLE PROTEIN KINASE C20 SHOPE FIBROMA VIRUS (STRAIN KASZA) 83-98 PKRF1_VACCC POSSIBLE PROTEIN KINASE F10 VACCINIA VIRUS (STRAIN COPENHAGEN)  85-100 PKRF1_VACCP POSSIBLE PROTEIN KINASE F10 VACCINIA VIRUS (STRAIN L-IVP) 52-67 PKRF1_VARV POSSIBLE PROTEIN KINASE F10 VARIOLA VIRUS  85-100 PKROS_AVISU ROS TYR KINASE TRANSFORMING PROTEIN AVIAN SARCOMA VIRUS (STRAIN UR2)  6-29 202-223 284-305 PKRYK_AVIR3 TYR-PROTEIN KINASE TRANSFORMING AVIAN RETROVIRUS RPL30 154-172 221-241 PROTEIN R PKSEA_AVIET TYR-PROTEIN KINASE TRANSFORMING AVIAN ERYTHROBLASTOSIS VIRUS (STRAIN S13) 158-177 PROTEIN SE PKSRC_AVIS2 TYR-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN PR2257) 361-377 PROTEIN SR PKSRC_AVISR TYR-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN RASV1441) 361-377 PROTEIN SR PKSRC_AVISS TYR-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN S1) 361-377 PROTEIN SR PKSRC_AVIST TYR-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN S2) 361-377 PROTEIN SR PKSRC_RSVHI TYR-PROTEIN KINASE TRANSFORMING ROUS SARCOMA VIRUS (STRAIN H-19) 361-377 PROTEIN SR PKSRC_RSVP TYR-PROTEIN KINASE TRANSFORMING ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 361-377 PROTEIN SR PKSRC_RSVPA TYR-PROTEIN KINASE TRANSFORMING ROUS SARCOMA VIRUS (STRAIN PA101T) 358-374 PROTEIN SR PKSRC_RSVSR TYR-PROTEIN KINASE TRANSFORMING ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN) 361-377 PROTEIN SR PKYES_AVISY TYR-PROTEIN KINASE TRANSFORMING AVIAN SARCOMA VIRUS (STRAIN Y73 361-377 PROTEIN Y PL100_ADE02 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 489-511 PL100_ADE0S LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 489-511 PL100_ADE41 LATE 100 KD PROTEIN HUMAN ADENOVIRUS TYPE 41 458-480 PL52_ADE02 LATE L1 52 KD PROTEIN HUMAN ADENOVIRUS TYPE 2 237-259 PL52_ADE05 LATE L1 52 KD PROTEIN HUMAN ADENOVIRUS TYPE 5 237-259 PLEC1_FOWPM HEPATIC LECTIN HOMOLOG FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])  2-26 PLMP1_EBV LATENT MEMBRANE PROTEIN 1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 20-43  79-100 PLMP1_EBVC LATENT MEMBRANE PROTEIN 1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 20-43  79-100 PLMP1_EBVR LATENT MEMBRANE PROTEIN 1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 20-43  79-100 PLMP2_EBV GENE TERMINAL PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 181-196 204-226 267-288 291-315 346-369 390-410 PMCEL_SFVKA MRNA CAPPING ENZYME, LARGE SUBUNIT SHOPE FIBROMA VIRUS (STRAIN KASZA) 244-260 556-578 679-699 PMCEL_VACCC MRNA CAPPING ENZYME, LARGE SUBUNIT VACCINIA VIRUS (STRAIN COPENHAGEN)  81-102 265-282 289-312 677-707 PMCEL_VACCV MRNA CAPPING ENZYME, LARGE SUBUNIT VACCINIA VIRUS (STRAIN WR)  81-102 265-282 289-312 687-707 PMCEL_VARV MRNA CAPPING ENZYME, LARGE SUBUNIT VARIOLA VIRUS  81-102 265-282 289-312 687-707 PMCE_ASFB7 MRNA CAPPING ENZYME AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 217-243 PMCE_REOVD MRNA CAPPING ENZYME REOVIRUS (TYPE 3/STRAIN DEARING) 358-384 567-588 714-741 PMOVP_CGMVS MOVEMENT PROTEIN CUCUMBER GREEN MOTTLE MOSAIC VIRUS 157-172 (WATERMELON STRAIN S PMOVP_CGMVW MOVEMENT PROTEIN CUCUMBER GREEN MOTTLE MOSAIC VIRUS 157-172 (WATERMELON STRAIN PMOVP_ORSV MOVEMENT PROTEIN ODONTOGLOSSUM RINGSPOT VIRUS 49-74 178-205 PMOVP_PPMVS MOVEMENT PROTEIN PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) 25-50 186-201 PMOVP_TMGMV MOVEMENT PROTEIN TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 186-201 PMOVP_TMVCO MOVEMENT PROTEIN TOBACCO MOSAIC VIRUS (STRAIN COWPEA)  88-107 156-171 PMTC1_CHVN1 MODIFICATION METHYLASE CVIBI CHLORELLA VIRUS NC-1A 129-156 PMTC2_CHVP1 MODIFICATION METHYLASE CVIAII PARAMECIUM BURSARIA CHLORELLA VIRUS 1 ( 72-94 PMTC3_CHVN1 MODIFICATION METHYLASE CVIBIII CHLORELLA VIRUS NC-1A 177-192 265-286 PMYBE_AVILE P135-GAG-MYB-ETS TRANSFORMING AVIAN LEUKEMIA VIRUS E26 104-124 PROTEIN ( PMYB_AVIMB MYB TRANSFORMING PROTEIN AVIAN MYELOBLASTOSIS VIRUS 218-238 301-326 PNCAP_AINOV NUCLEOCAPSID PROTEIN AINO VIRUS 159-181 PNCAP_BUNLC NUCLEOCAPSID PROTEIN BUNYAVIRUS LA CROSSE 84-99 PNCAP_BUNSH NUCLEOCAPSID PROTEIN BUNYAVIRUS SNOWSHOE HARE 84-99 PNCAP_CDVO NUCLEOCAPSID PROTEIN CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 31-50 PNCAP_FIPV NUCLEOCAPSID PROTEIN FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 57-74 PNCAP_HANTV NUCLEOCAPSID PROTEIN HANTAAN VIRUS (STRAIN 76-118) 317-342 PNCAP_HAZVJ NUCLEOCAPSID PROTEIN HAZARA VIRUS (ISOLATE JC280) 428-446 PNCAP_IHNV NUCLEOCAPSID PROTEIN INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS 110-137 239-265 (STRAIN ROUND BUT PNCAP_INSV NUCLEOCAPSID PROTEIN IMPATIENS NECROTIC SPOT VIRUS 155-179 PNCAP_MEASE NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN EDMONSTON) 40-59 PNCAP_MEASH NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN HALLE) 40-59 PNCAP_MEASY NUCLEOCAPSID PROTEIN MEASLES VIRUS (STRAIN YAMAGATA-1) 40-59 PNCAP_MUMP1 NUCLEOCAPSID PROTEIN MUMPS VIRUS (STRAIN SBL-1) 156-178 PNCAP_MUMPM NUCLEOCAPSID PROTEIN MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 156-178 PNCAP_PHV NUCLEOCAPSID PROTEIN PROSPECT HILL VIRUS 36-58 218-236 256-277 321-346 PNCAP_PI1HC NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 42-58  86-102 PNCAP_PI1HW NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN 42-58  86-102 WASHINGTON/1957) PNCAP_PI3B NUCLEOCAPSID PROTEIN BOVINE PARAINFLUENZA 3 VIRUS 163-184 PNCAP_PI3H4 NUCLEOCAPSID PROTEIN HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 163-184 PNCAP_PUUMH NUCLEOCAPSID PROTEIN PUUMALA VIRUS (STRAIN HALLNAS B1) 36-58 321-346 PNCAP_PUUMS NUCLEOCAPSID PROTEIN PUUMALA VIRUS (STRAIN SOTKAMO) 36-58 218-236 321-346 PNCAP_RABVA NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN AVO1) 299-322 PNCAP_RABVP NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN PV) 299-322 PNCAP_RABVS NUCLEOCAPSID PROTEIN RABIES VIRUS (STRAIN SAD B19) 299-322 PNCAP_RVFVZ NUCLEOCAPSID PROTEIN RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) 158-180 PNCAP_SENDS NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 29-51  86-102 PNCAP_SENDE NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN ENDERS) 42-58  86-102 PNCAP_SENDH NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN HARRIS) 42-58  86-102 PNCAP_SENDZ NUCLEOCAPSID PROTEIN SENDAI VIRUS (STRAIN Z) 29-51  86-102 PNCAP_SEOUS NUCLEOCAPSID PROTEIN SEOUL VIRUS (STRAIN SR-11) 112-138 317-342 PNCAP_SFSV NUCLEOCAPSID PROTEIN SANDFLY FEVER SICILIAN VIRUS 156-181 PNCAP_TACV NUCLEOCAPSID PROTEIN TACARIBE VIRUS 219-241 PNCAP_UUK NUCLEOCAPSID PROTEIN UUKUNIEMI VIRUS 167-189 PNCAP_VHSV0 NUCLEOCAPSID PROTEIN VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71) 240-266 PNCAP_VHSVM NUCLEOCAPSID PROTEIN VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 240-266 MAKAH) PNCAP_VSVJO NUCLEOCAPSID PROTEIN VESICULAR STOMATITIS VIRUS (SEROTYPE 64-80 NEW JERSEY/STRAIN OG PNCAP_VSVSJ PNEF_HV2RO NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 110-129 (ISOLATE ROD) PNEF_HV2ST NEGATIVE FACTOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 106-128 (ISOLATE ST) PNRAM_IABDA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/BLACK DUCK/  3-29 AUSTRALIA/702/78) PNRAM_IACHI NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)  3-24 PNRAM_IADA1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76)  3-24 PNRAM_IADGE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/DUCK/GERMANY/49)  3-29 PNRAM_IAFPW NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE  3-29 301-317 VIRUS/WEYBRIDGE) PNRAM_IAHCO NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/14) 299-315 PNRAM_IAHK1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/81)  3-29 PNRAM_IAKIE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)  3-24 PNRAM_IALEN NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)  3-24 PNRAM_IAME1 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/MEMPHIS/  3-30 1/71H-A/BELLAMY/42N) PNRAM_IAPAR NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73)  3-30 PNRAM_IAPUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)  3-30 PNRAM_IARUE NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/  3-29 NEW JERSEY/60/ PNRAM_IASH2 NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/SHEARWATER/  3-29 AUSTRALIA/72) PNRAM_IATKR NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)  3-24 56-77 PNRAM_IATRA NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/TERN/  3-29 AUSTRALIA/G70C/75) PNRAM_IAUSS NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/USSR/90/77)  3-24 PNRAM_IAWHM NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84)  3-29 PNRAM_IAWIL NEURAMINIDASE INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)  3-30 PNRAM_INBBE NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)  3-20 PNRAM_INBHK NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)  3-20 PNRAM_INBLE NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/LEE/40)  3-20 PNRAM_INBLN NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/LENINGRAD/179/86)  3-20 PNRAM_INBMD NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)  3-20 PNRAM_INBMF NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/MEMPHIS/3/89)  3-20 PNRAM_INBOR NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)  3-20 PNRAM_INBSI NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)  3-20 PNRAM_INBUS NEURAMINIDASE INFLUENZA B VIRUS (STRAIN D/USSR/100/83)  3-20 PNRAM_INBVI NEURAMINIDASE INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85)  3-20 PNS1_SIDEV PROBABLE NONSTRUCTURAL PROTEIN BOMBYX DENSONUCLEOSIS VIRUS 135-151 PRECURSO PNS2_SIDEV PROBABLE STRUCTURAL PROTEIN BOMBYX DENSONUCLEOSIS VIRUS  2-26 196-221 783-806 PRECURSOR PNS3_SIDEV PROBABLE NONSTRUCTURAL PROTEIN BOMBYX DENSONUCLEOSIS VIRUS 60-78 PRECURSO PNSS_TSWVB NON-STRUCTURAL PROTEIN TOMATO SPOTTED WILT VIRUS (BRAZILIAN  80-105 431-455 ISOLATE CPNH1/BR-01) PNSS_TSWVL NON-STRUCTURAL PROTEIN TOMATO SPOTTED WILT VIRUS (STRAIN L3)  80-105 436-458 PNTP1_VACCC NUCLEOSIDE TRIPHOSPHATASE I VACCINIA VIRUS (STRAIN COPENHAGEN) 20-45 387-403 PNTP1_VACCV NUCLEOSIDE TRIPHOSPHATASE I VACCINIA VIRUS (STRAIN WR) 20-45 387-403 PNTP1_VARV NUCLEOSIDE TRIPHOSPHATASE I VARIOLA VIRUS 293-309 PP100_HSV6U MAJOR ANTIGENIC STRUCTURAL PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 182-204 250-270 344-366 PPAP2_FOWPV POLY(A) POLYMERASE REGULATORY FOWLPOX VIRUS  79-100 SUBUNIT PPAP2_MYXVA POLY(A) POLYMERASE REGULATORY MYXOMA VIRUS (ISOLATE AUST/URIARRA/VERG-86/1) 101-116 SUBUNIT PPAP2_VACCC POLY(A) POLYMERASE REGULATORY VACCINIA VIRUS (STRAIN COPENHAGEN) 101-116 SUBUNIT PPAP2_VACCV POLY(A) POLYMERASE REGULATORY VACCINIA VIRUS (STRAIN WR) 101-116 SUBUNIT PPAP2_VARV POLY(A) POLYMERASE REGULATORY VARIOLA VIRUS 101-116 SUBUNIT PPCNA_NPVAC PROLIFERATING CELL NUCLEAR ANTIGEN AUTOGRAPHA CALIFORNICA NUCLEAR 67-89 227-244 POLYHEDROSIS VIRUS PPE21_NPVOP 21 2 KD PROTEIN IN PE 5′REGION ORGYIA PSEUDOTSUGATA MULTICAPSID 117-139 POLYHEDROSIS VIRUS PPE25_NPVAC 25 1 KD PROTEIN IN PE-P26 INTERGENIC AUTOGRAPHA CALIFORNICA NUCLEAR 57-83 REGION POLYHEDROSIS VIRUS PPE38_NPVAC MAJOR IMMEDIATE EARLY PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 17-33 POLYHEDROSIS VIRUS PPEN3_ADE02 PENTON PROTEIN HUMAN ADENOVIRUS TYPE 2 171-195 PPEN3_ADE05 PENTON PROTEIN HUMAN ADENOVIRUS TYPE 5 171-195 PPEN3_ADEGX PENTON PROTEIN AVIAN ADENOVIRUS GAL10 (STRAIN SA2) 194-214 307-324 PPIV2_ADE07 MATURATION PROTEIN HUMAN ADENOVIRUS TYPE 7 412-431 PPIV2_ADEM1 MATURATION PROTEIN MOUSE ADENOVIRUS TYPE 1 409-428 PPOL1_BAYMG GENOME POLYPROTEIN 1 BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) 739-755 835-856 1072- 1889- 1094 1910 PPOL1_BAYMU GENOME POLYPROTEIN 1 BARLEY YELLOW MOSAIC VIRUS (JAPANESE 739-755 835-856 1072- 1465- 1888- STRAIN II-1) 1094 1485 1909 PPOL1_GCMV RNA1 POLYPROTEIN HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS 691-717 1040- 1116- 1062 1143 PPOL1_GFLV RNA1 POLYPROTEIN GRAPEVINE FANLEAF VIRUS 380-396 477-503 545-564 1079- 1149- 1341- 1761- 1821- 2020- 1098 1171 1356 1785 1848 2044 PPOL1_TBRVS RNA1 POLYPROTEIN TOMATO BLACK RING VIRUS (STRAIN S) 1132- 1159 PPOL2_ARMV RNA2 POLYPROTEIN ARABIS MOSAIC VIRUS 129-150 243-266 346-367 PPOL2_BAYMG GENOME POLYPROTEIN 2 BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE) 325-350 463-485 PPOL2_BAYMU GENOME POLYPROTEIN 2 BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1) 325-350 463-485 PPOL2_GFLV RNA2 POLYPROTEIN GRAPEVINE PANLEAF VIRUS 808-829 1021- 1045 PPOL2_TBRVS RNA2 POLYPROTEIN TOMATO BLACK RING VIRUS (STRAIN S) 425-446 541-557 856-876 1203- 1233 PPOL2_TRSVR RNA2 POLYPROTEIN TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY) 316-340 427-448 1527- 1554 PPOLG_BOVEV GENOME POLYPROTEIN BOVINE ENTEROVIRUS (STRAIN VG-5-27) 1833- 1859 PPOLG_BVDVN GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL) 627-653 943-965 1119- 1282- 1363- 1868- 2460- 2608- 2883- 1134 1297 1387 1892 2487 2628 2898 3141- 3220- 3856- 3967- 3161 3241 3871 3986 PPOLG_BVDVS GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1) 627-653 943-965 1119- 1138- 1189- 1282- 1363- 1778- 2370- 1134 1163 1205 1297 1387 1802 2397 2518- 2741- 2793- 3766- 2538 2766 2808 3781 PPOLG_COXA2 GENOME POLYPROTEIN COXSACKIEVIRUS A21 (STRAIN COE) 850-867 PPOLG_COXA3 GENOME POLYPROTEIN COXSACKIEVIRUS A23 (ECHO 9 VIRUS) 67-92 PPOLG_COXA9 GENOME POLYPROTEIN COXSACKIEVIRUS A9 (STRAIN GRIGGS) 1491- 1601- 1517 1626 PPOLG_COXB1 GENOME POLYPROTEIN COXSACKIEVIRUS B1 1472- 1582- 1498 1607 PPOLG_COXB3 GENOME POLYPROTEIN COXSACKIEVIRUS B3 228-255 1475- 1585- 1501 1610 PPOLG_COXB4 GENOME POLYPROTEIN COXSACKIEVIRUS B4 821-846 1473- 1583- 1499 1608 PPOLG_COXB5 GENOME POLYPROTEIN COXSACKIEVIRUS B5 1475- 1585- 1501 1610 PPOLG_DEN1S GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90) 918-943 1111- 1211- 1243- 1612- 2222- 2348- 2401- 3050- 1138 1236 1260 1628 2248 2365 2426 3069 PPOLG_DEN1W GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN WESTERN PACIFIC) 919-944 1112- 1139 PPOLG_DEN23 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M3) 336-354 PPOLG_DEN26 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681) 848-868 919-944 1112- 1244- 1283- 1613- 2293- 2347- 2405- 1139 1261 1301 1629 2318 2364 2425 2700- 2726 PPOLG_DEN27 GENONE POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53) 848-868 919-944 1112- 1244- 1283- 1376- 1613- 2293- 2347- 1139 1261 1301 1396 1629 2318 2364 2405- 2700- 2425 2726 PPOLG_DEN2D GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN D2-04) 848-868 919-944 PPOLG_DEN2J GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN JAMICA) 848-868 919-944 1112- 1244- 1376- 1613- 2293- 2347- 2405- 1139 1261 1396 1629 2318 2364 2425 2700- 2726 PPOLG_DEN2N GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C) 100-120 171-196 364-391 PPOLG_DEN2P GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN PR159/S1) 919-944 1112- 1244- 1283- 1376- 1613- 2290- 2344- 2402- 1139 1261 1301 1396 1629 2315 2361 2422 2697- 2723 PPOLG_DEN2T GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974) 639-664 832-859 964-981 1203- 1219 PPOLG_DEN3 GENOME POLYPROTEIN DENGUE VIRUS TYPE 3 917-942 1210- 1242- 1174- 1611- 2141- 2221- 2146- 2199- 1228 1259 1194 1627 2162 2247 2167 2424 2698- 3048- 2724 3067 PPOLG_DEN4 GENOME POLYPROTEIN DENGUE VIRUS TYPE 4 1209- 1241- 1611- 2220- 2342- 2400- 3045- 1227 1258 1627 2246 2359 2420 3064 PPOLG_EC11G GENOME POLYPROTEIN ECHOVIRUS 11 (STRAIN GREGORY 664-690 774-799 PPOLG_EMCV GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS 225-247 558-578 1194- 1650- 1215 1667 PPOLG_EMCVB GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN 560-580 1120- 1196- EMC-B NONDIABETOGENI 1141 1217 PPOLG_EMCVD GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN 560-580 1120- 1196- EMC-D DIABETOGENIC) 1141 1217 PPOLG_ENMG3 GENOME POLYPROTEIN MENGO ENCEPHALOMYOCARDITIS VIRUS (STRAIN 37A) 560-580 PPOLG_ENMGO GENOME POLYPROTEIN MENGO ENCEPHALOMYOCARDITIS VIRUS 493-513 PPOLG_FMDV1 GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61) 121-141  984- 1036- 1396- 1465- 1764- 1003 1057 1411 1487 1791 PPOLG_FMDV5 GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A5) 162-187 PPOLG_FMDVA GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12) 121-140  984- 1036- 1396- 1465- 1763- 1003 1057 1411 1487 1790 PPOLG_FMDVO GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAINS 121-141  984- 1036- 1396- 1465- 1763- O1K AND OIBFS) ( 1003 1057 1411 1487 1790 PPOLG_FMDVS GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN 301-320 C1-SANTA PAU[C-S8]) PPOLG_FMDVT GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN C1) 121-141 979-998 PPOLG_HCV1 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE 1) 112-133 143-169 619-640 683-699 833-857 2327- 2442- 2837- 2347 2457 2859 PPOLG_HCVA GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN ALFORT) 102-128 1143- 1282- 1778- 2370- 2518- 3131- 3737- 3767- 1163 1301 1802 2397 2538 3152 3753 3782 3877- 3893 PPOLG_HCVB GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN BRESCIA) 102-128 1143- 1282- 1778- 2370- 2518- 3131- 3737- 3767- 1163 1301 1802 2397 2538 3152 3753 3782 3877- 3893 PPOLG_HCVBK GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE BK) 112-133 143-169 619-640 683-699 2327- 2441- 2836- 2988- 2347 2456 2858 3007 PPOLG_HCVE1 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE EC1) 27-53 PPOLG_HCVH GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE H) 112-133 143-169 619-640 683-699 833-853 863-880 2442- 2837- 2457 2859 PPOLG_HCVH4 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCV-476) 112-133 143-169 PPOLG_HCVH7 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCT27) 15-41 PPOLG_HCVH8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCT18) 27-53 PPOLG_HCVHK GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCV-KF) 112-133 143-169 PPOLG_HCVJ2 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J2) 112-133 143-169 PPOLG_HCVJ5 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J5) 112-133 143-169 623-644 687-703 PPOLG_HCVJ6 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J6) 112-133 143-169 623-644 687-703 837-861 1827- 2327- 2859- 3011- 1853 2347 2881 3030 PPOLG_HCVJ7 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J7) 143-169 623-644 687-703 PPOLG_HCVJ8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J8) 112-133 143-169 687-703 837-861 867-884 1172- 1827- 2859- 3011- 1188 1853 2881 3030 PPOLG_HCVJA GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE JAPANESE) 112-133 143-169 619-640 683-699 833-857 863-880 2327- 2836- 2988- 2347 2858 3007 PPOLG_HCVJT GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-JT) 112-133 143-169 619-640 683-699 833-857 2327- 2441- 2836- 2347 2456 2858 PPOLG_HCVTH GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE TH) 27-53 PPOLG_HCVTW GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE TAIWAN) 112-133 143-169 619-640 683-699 833-857 2327- 2441- 2836- 2988- 2347 2456 2858 3007 PPOLG_HPAV1 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN LCDC-1) 303-323 PPOLG_HPAV2 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 24A) 401-428 799-819 1195- 1687- 2008- 2068- 1210 1708 2033 2092 PPOLG_HPAV4 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 43C 799-819 1195- 1687- 2008- 2068- 1210 1708 2033 2092 PPOLG_HPAV8 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 18F) 799-819 1195- 1687- 2008- 2068- 1210 1708 2033 2092 PPOLG_HPAVC GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN CR326) 799-819 PPOLG_HPAVG GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN GA76) 778-798 PPOLG_HPAVH GENOME POLYPROTEIN HEIATITIS A VIRUS (STRAIN HM-175) 799-819 1195- 1688- 2009- 2069- 1210 1709 2034 2093 PPOLG_HPAVL GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN LA) 799-819 1195- 1688- 2009- 2069- 1210 1709 2034 2093 PPOLG_HPAVM GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN MBB) 799-819 1195- 1688- 2009- 2069- 1210 1709 2034 2093 PPOLG_HPAVS GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27) 1199- 1690- 2012- 2072- 1214 1711 2037 2096 PPOLG_HPV14 GENOME POLYPROTEIN HUMAN RHINOVIRUS 14 (HRV-14 1383- 1962- 1406 1982 PPOLG_HRV1A GENOME POLYPROTEIN HUMAN RHINOVIRUS 1A (HRV-1A) 361-379 547-562 PPOLG_HRV1B GENOME POLYPROTEIN HUMAN RHINOVIRUS 1B (HRV-1B) 386-404 572-587 859-876 1029- 1453- 1625- 1816- 1941- 1052 1478 1641 1842 1961 PPOLG_HRV2 GENOME POLYPROTEIN HUMAN RHINOVIRUS 2 (HRV-2) 569-584 694-713 1022- 1446- 1618- 1809- 1843- 1045 1469 1634 1835 1866 PPOLG_HRV89 GENOME POLYPROTEIN HUMAN RHINOVIRUS 89 (HRV-89) 576-591 1038- 1229- 1332- 1460- 1632- 1823- 1948- 1061 1253 1358 1485 1648 1849 1968 PPOLG_HUHV7 GENOME POLYPROTEIN HUMAN ENTEROVIRUS 70 (STRAIN J670/71) 1492- 1515 PPOLG_IBDVO STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS 905-922 (STRAIN OH) PPOLG_JAEV1 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14) 938-963 1306- 1642- 2245- 2326- 2462- 1325 1658 2270 2351 2481 PPOLG_JAEV5 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V)) 938-963 1306- 1642- 2245- 2326- 2462- 1325 1658 2270 2351 2481 PPOLG_JAEVJ GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982) 938-963 1306- 1642- 2245- 2326- 2462- 1325 1658 2270 2351 2481 PPOLG_JAEVN GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA) 866-891 1234- 1251 PPOLG_KUNJM GENOME POLYPROTEIN KUNJIN VIRUS (STRAIN MRM61C) 561-576 935-960 1307- 1643- 2246- 2327- 2440- 2463- 2641- 1326 1659 2271 2352 2460 2483 2658 2798- 2814 PPOLG_LANVT GENOME POLYPROTEIN LANGAT VIRUS (STRAIN TP21) 67-89 527-551 736-756 835-862 1157- 1519- 1630- 2158- 2230- 1178 1544 1653 2182 2257 2366- 2424- 2766- 2387 2451 2784 PPOLG_LANVY GENOME POLYPROTEIN LANGAT VIRUS (STRAIN YELANTSEV) 67-89 527-551 PPOLG_LIV GENOME POLYPROTEIN LOUPING ILL VIRUS (LI) 67-89 527-551 835-862 PPOLG_LIVSB GENOME POLYPROTEIN LOUPING ILL VIRUS (STRAIN SB 526) 247-271 PPOLG_MCFA GENOME POLYPROTEIN MOSQUITO CELL FUSING AGENT (CFA FLAVIVIRUS) 120-137 1174- 1402- 1788- 1872- 2012- 2810- 1199 1428 1805 1887 2029 2827 PPOLG_MDMV GENOME POLYPROTEIN MAIZE DWARF MOSAIC VIRUS 39-56 PPOLG_MVEV GENOME POLYPROTEIN MURRAY VALLEY ENCEPHALITIS VIRUS 331-347 563-578 937-962 1305- 1523- 1585- 1641- 1324 1548 1602 1657 PPOLG_OMV GENOME POLYPROTEIN ORNITHOGALUM MOSAIC VIRUS  90-110 111-126 678-696 898-914 PPOLG_PEMVC GENOME POLYPROTEIN PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE) 690-717 826-846 1009- 1301- 1455- 1484- 1676- 1921- 2002- 1034 1318 1482 1500 1697 1945 2022 PPOLG_POL1M GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 1409- 1432 PPOLG_POL1S GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN SABIN) 1410- 1433 PPOLG_POL2L GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN LANSING) 1408- 1431 PPOLG_POL2W GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN W-2) 1408- 1431 PPOLG_POL32 GENOME POLYPROTE1N POLIOVIRUS TYPE 3 (STRAIN 23127) 577-594 1407- 1430 PPOLG_POL3L GENOME POLYPROTEIN POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND 577-594 1407- P3/LEON 12A[1]B) 1430 PPOLG_PPVD GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN D) 153-178 551-571 714-741 1098- 1468- 1497- 2606- 3084- 1115 1495 1513 2624 3106 PPOLG_PPVEA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN EL AMAR) 981-999 1461- 1483 PPOLG_PPVNA GENOME POLYPROTEIN PLUM POX POTYVIRUS (ISOLATE NAT) 153-178 713-740 1097- 1467- 1496- 2605- 3068- 1114 1494 1512 2623 3090 PPOLG_PPVRA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN RANKOVIC) 153-178 713-740 1097- 1467- 1496- 2605- 3083- 1114 1494 1512 2623 3105 PPOLG_PRSVH GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA) 272-290 PPOLG_PRSVP GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1) 163-181 PPOLG_PRSVW GENOME POLYPROTEIN PAPAYA RINGSPOT VIRUS (STRAIN W) 163-181 PPOLG_PSBMV GENOME POLYPROTEIN PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1) 47-62 251-268 339-357 654-674  981- 1411- 1565- 2708- 1001 1428 1592 2726 PPOLG_PVYC GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN C) 755-776 PPOLG_PVYHU GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN HUNGARIAN) 755-776 964-982 1010- 1109- 1456- 1485- 1677- 1922- 2588- 1036 1125 1483 1501 1698 1946 2606 3004- 3026 PPOLG_PVYN GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN N) 755-776 964-982 1010- 1109- 1456- 1485- 1677- 1922- 2590- 1036 1125 1483 1501 1698 1946 2608 PPOLG_PVYO GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN O) 755-776 PPOLG_PYFV1 GENOME POLYPROTEIN PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121) 592-616 1326- 1626- 1903- 2621- 2702- 2766- 1353 1651 1924 2642 2729 2783 PPOLG_STEVM GENOME POLYPROTEIN ST LOUIS ENCEPHALITIS VIRUS (STRAIN MSI-7) 1301- 1324 PPOLG_SUMVS GENOME POLYPROTEIN SUGARCANE MOSAIC VIRUS (STRAIN SC) 39-56 PPOLG_SVDVH GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76) 1475- 1585- 1501 1610 PPOLG_SVDVU GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN UKG/27/72) 1475- 1585- 1501 1610 PPOLG_TBEVS GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN) 67-89 527-551 1363- 1519- 1630- 1740- 2230- 2366- 2765- 1378 1544 1653 1761 2257 2387 2783 PPOLG_TBEVW GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE) 67-89 527-551 835-862 1519- 1630- 2230- 2366- 2766- 1544 1653 2257 2387 2784 PPOLG_TEV GENOME POLYPROTEIN TOBACCO ETCH VIRUS (TEV 827-853 953-980 1016- 1114- 1307- 1490- 1042 1130 1324 1506 PPOLG_TMEVB GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS 924-941 1074- 1119- 1520- 1658- (STRAIN BEAN 8386) 1095 1140 1546 1677 PPOLG_TMEVD GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS 1072- 1117- 1518- 1656- (STRAIN DA) 1093 1138 1544 1675 PPOLG_TMEVG GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS 645-670 924-941 1074- 1119- 1520- 1658- (STRAIN GDVI1) 1095 1140 1546 1677 PPOLG_TUMV GENOME POLYPROTEIN TURNIP MOSAIC VIRUS 23-39 970-991 1138- 1573- 1156 1595 PPOLG_TVMV GENOME POLYPROTEIN TOBACCO VEIN MOTTLING VIRUS 404-428 497-517 660-687 850-866 967-992 1257- 2537- 1274 2562 PPOLG_WMV2 GENOME POLYPROTEIN WATERMELON MOSAIC VIRUS II 198-218 PPOLG_WNV GENOME POLYPROTEIN WEST NILE VIRUS 557-572 931-956 1303- 1639- 2240- 2324- 2437- 2638- 2795- 1322 1655 2267 2349 2457 2655 2811 PPOLG_YEFV1 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN 17D) 74-95 1157- 1228- 1385- 1495- 1625- 1761- 2229- 1179 1248 1405 1511 1641 1778 2254 PPOLG_YEFV2 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204) 74-95 1157- 1228- 1385- 1495- 1625- 1761- 2229- 1179 1248 1405 1511 1641 1778 2254 PPOLG_YEFV8 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN 1899/81) 74-95 PPOLH_POL1M GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 1410- 1433 PPOLN_EEVVT NONSTRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS  90-107 235-254 613-634 1001- 1153- 1923- 2129- 2201- (STRAIN TRINIDAD DON 1018 1178 1939 2144 2221 PPOLN_FCVC6 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN CF1/68 FIV) 443-469 748-766 902-923 1069- 1088 PPOLN_FCVF4 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN JAPANESE F4) 300-326 PPOLN_FCVF9 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN F9) 171-186 262-283 919-945 1224- 1378- 1545- 1242 1399 1564 PPOLN_HEVBU NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN BURMA) 250-266 1274- 1291 PPOLN_HEVME NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN MEXICO) 250-266 1272- 1289 PPOLN_HEVMY NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN MYANMAR) 250-266 1274- 1291 PPOLN_HEVPA NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN PAKISTAN) 249-265 1273- 1290 PPOLN_MIDDV NONSTRUCTURAL POLYPROTEIN MIDDELBURG VIRUS 488-512 628-643 700-720 PPOLN_ONNVG NONSTRUCTURAL POLYPROTEIN O'NYONG-NYONG VIRUS (STRAIN GULU)  90-107 613-634 2148- 2220- 2163 2240 PPOLN_RHDV NON-STRUCTURAL POLYPROTEIN RABBIT HEMORRHAGIC DISEASE VIRUS 156-180 270-292 299-320 479-502 1330- 1429- 1471- 1353 1455 1490 PPOLN_RMDV3 NON-STRUCTURAL POLYPROTEIN RABBIT HEMORRHAGIC DISEASE VIRUS (STRAIN V-351) 115-135 PPOLN_RRVN NONSTRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN NB5092)  89-106 611-632 2113- 2185- 2128 2205 PPOLN_RRVT NONSTRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) 782-797 854-874 PPOLN_RUBVT NONSTRUCTURAL POLYPROTEIN RUBELLA VIRUS (STRAIN THERIEN) 14-37  97-113 263-279 670-694 901-918 1374- 2035- 1393 2052 PPOLN_SFV NONSTRUCTURAL POLYPROTEIN SEMLIKI FOREST VIRUS  91-108 617-643 2062- 2134- 2077 2154 PPOLN_SINDO NONSTRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUDTYPE OCKELBO/STRAIN 620-646 1123- 1790- 2148- 2220- EDSBYN 82-5) 1150 1814 2161 2240 PPOLN_SINDV NONSTRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAIN HRSP) 620-646 1123- 1744- 1790- 2146- 2218- 1150 1763 1812 2161 2238 PPOLR_EPMV RNA REPLICASE POLYPROTEIN EGGPLANT MOSAIC VIRUS 808-833 PPOLR_OYMV RNA REPLICASE POLYPROTEIN ONONIS YELLOW MOSAIC VIRUS 707-727 941-962 PPOLR_TYMV RNA REPLICASE POLYPROTEIN TURNIP YELLOW MOSAIC VIRUS 212-233 436-453 1173- 1192 PPOLR_TYMVA RNA REPLICASE POLYPROTEIN TURNIP YELLOW MOSAIC VIRUS 212-233 436-453 1173- (AUSTRALIAN ISOLATE) 1192 PPOLR_TYMVC RNA REPLICASE POLYPROTEIN TURNIP YELLOW MOSAIC VIRUS (ISOLATE TYMC) 212-233 436-453 1173- 1192 PPOLS_EEEV STRUCTURAL POLYPROTEIN EASTERN EQUINE ENCEPHALITIS VIRUS 35-50 213-229 491-507 PPOLS_EEEV3 STRUCTURAL POLYPROTEIN EASTERN EQUINE ENCEPHALITIS VIRUS 35-50 214-230 492-508 PPOLS_EEVV8 STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS 32-48 229-245 504-522 (STRAIN TC-83) PPOLS_EEVVT STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS 32-48 229-245 504-522 (STRAIN TRINIDAD DON PPOLS_IBDV5 STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS 900-922 (STRAIN 52/70) PPOLS_IBDVA STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS 900-922 (STRAIN AUSTRALIAN 00 PPOLS_IBDVC STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS 900-922 (STRAIN CU-1) PPOLS_IBDVP STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS 881-903 (STRAIN PBG-98) PPOLS_IBDVS STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS 900-922 (STRAIN STC) PPOLS_ONNVG STRUCTURAL POLYPROTEIN O'NYONG-NYONG VIRUS (STRAIN GULU) 688-708 PPOLS_RRVT STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) 1216- 1243 PPOLS_RUBVH STRUCTURAL POLYPROTEIN RUBELLA VIRUS (VACCINE STRAIN HPV77) 281-302 PPOLS_RUBVM STRUCTURAL POLYPROTEIN RUBELLA VIRUS (STRAIN M33) 280-301 PPOLS_RUBVR STRUCTURAL POLYPROTEIN RUBELLA VIRUS (VACCINE STRAIN RA27/3 281-302 PPOLS_RUBVT STRUCTURAL POLYPROTEIN RUBELLA VIRUS (STRAIN THERIEN 281-302 1041- 1060 PPOLS_SFV STRUCTURAL POLYPROTEIN SEMLIKI FOREST VIRUS 35-59 751-772 780-801 PPOLS_SINDO STRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN 33-52 EDSBYN 82-5) PPOLS_SINDV STRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAINS HRSP AND HRLP) 33-52 PPOLS_WEEV STRUCTURAL POLYPROTEIN WESTERN EQUINE ENCEPHALITIS VIRUS 36-51 909-933 PPOL_AVIRE POL POLYPROTEIN AVIAN RETICULOENDOTHELIOSIS VIRUS 283-303 PPOL_BAEVM POL POLYPROTEIN BABOON ENDOGENOUS VIRUS (STRAIN M7) 526-544 973-993  999- 1070- 1019 1091 PPOL_BIV06 POL POLYPROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) 101-119 742-768 868-889 PPOL_BIV27 POL POLYPROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) 101-119 742-768 868-889 PPOL_BLVAU POL POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) 487-504 PPOL_BLVJ POL POLYPROTEIN (REVERSE BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1) 487-504 TRANSCRIPTASE PPOL_CAEVC POL POLYPROTEIN CAPRINE ARTHRITIS ENCEPHALITIS VIRUS 393-419 656-671 (STRAIN CORK) PPOL_CAMVC ENZYMATIC POLYPROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 184-204 380-407 471-494 PPOL_CAMVD ENZYMATIC POLYPROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 175-199 375-402 466-489 PPOL_CAMVE ENZYMATIC POLYPROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 184-204 380-407 471-494 PPOL_CAMVN ENZYMATIC POLYPROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 70-97 185-205 381-408 472-495 PPOL_CAMVS ENZYMATIC POLYPROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 184-204 380-407 471-494 PPOL_CERV ENZYMATIC POLYPROTEIN CARNATION ETCHED RING VIRUS 161-186 455-478 PPOL_COYMV PUTATIVE POLYPROTEIN COMMELINA YELLOW MOTTLE VIRUS 320-343 1286- 1606- 1641- 1311 1622 1665 PPOL_EIAV9 POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) 437-456 PPOL_ELAVC POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) 437-456 PPOL_EIAVY POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE 436-455 WYOMING) PPOL_FENV1 POL POLYPROTEIN FELINE ENDOGENOUS VIRUS ECEI 383-401 856-876 PPOL_FIVPE POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE 407-426 755-775 PETALUMA) PPOL_FIVSD POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE 407-426 755-775 SAN DIEGO) PPOL_FIVT2 POL POLYPROTEIN FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2) 406-425 665-690 755-775 1041- 1060 PPOL_FMVD ENZYMATIC POLYPROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 191-212 464-487 PPOL_FOAMV POL POLYPROTEIN HUMAN SPUMARETRO VIRUS 126-147 768-788 PPOL_GALV POL POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 59-80 971-991 1048- 1071 PPOL_HTL1A POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATK) 330-346 PPOL_HTL1C POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I 330-346 (CARIBBEAN ISOLATE) PPOL_HTLV2 POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE II 609-627 PPOL_HV1A2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 860-887 (ARV2/SF2 ISOLATE) PPOL_HV1B1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 635-660 872-899 (BH10 ISOLATE) PPOL_HV1B5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 872-899 (BH5 ISOLATE) PPOL_HV1BR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 872-899 (BRU ISOLATE) PPOL_HV1EL POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 622-647 859-886 (ELI ISOLATE) PPOL_HV1H2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 860-887 (HXB2 ISOLATE) PPOL_HV1JR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 864-891 (JRCSF ISOLATE) PPOL_HV1MA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 859-886 (MAL ISOLATE) PPOL_HV1MN POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 863-890 (MN ISOLATE) PPOL_HV1N5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 623-648 860-887 (NEW YORK-5 ISOLATE) PPOL_HV1ND POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 622-647 859-886 (NDK ISOLATE) PPOL_HV1OY POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 860-887 (OYI ISOLATE) PPOL_HV1PV POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 635-660 872-899 (PV22 ISOLATE) PPOL_HV1RH POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 859-886 (RF/HAT ISOLATE) PPOL_HV1U4 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 859-886 (STRAIN UGANDAN/ISO PPOL_HV1Z2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 622-647 859-886 (Z2/CDC-Z34 ISOLATE) PPOL_HV1Z6 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  5-32 (ZAIRE 6 ISOLATE) PPOL_HV2BE POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 379-406 907-934 (ISOLATE BEN) PPOL_HV2CA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 886-913 (ISOLATE CAM2) PPOL_HV2D1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 397-424 925-952 (ISOLATE D194) PPOL_HV2D2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 907-934 (ISOLATE D205,7) PPOL_HV2G1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 359-386 887-914 (ISOLATE GHANA-1) PPOL_HV2NZ POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 543-564 771-792 887-914 (ISOLATE NIH-Z) PPOL_HV2RO POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 888-915 (ISOLATE ROD) PPOL_HV2SB POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 359-386 887-907 (ISOLATE SBLISY) PPOL_HV2ST POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 379-406 907-934 (ISOLATE ST) PPOL_IPHA PUTATIVE POL POLYPROTEIN HAMSTER INTRACISTERNAL A-PARTICLE 166-190 198-225 460-477 PPOL_IPMA PUTATIVE POL POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 183-201 209-236 506-523 531-552 769-789 PPOL_IPMAI PROBABLE POL POLYPROTEIN MOUSE INTRACISTERNAL A-PARTICLE 102-120 128-155 407-423 425-442 PPOL_JSRV POL POLYPROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 186-213 507-526 660-679 (JAAGSIEKTE SHEEP RET PPOL_MCFF3 POL POLYPROTEIN MINK CELL FOCUS-FORMING MURINE LEUKEMIA 37-53 VIRUS (ISOLATE CI- PPOL_MLVAK POL POLYPROTEIN AKR MURINE LEUKEMIA VIRUS 651-671 728-744 PPOL_MLVAV POL POLYPROTEIN AKR MURINE LEUKEMIA VIRUS 335-354 978-998 1004- 1081- 1024 1097 PPOL_MLVCB POL POLYPROTEIN CAS-BR-E MURINE LEUKEMIA VIRUS 64-84  90-110 167-183 PPOL_MLVF5 POL POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57) 340-359  983-1003 1009- 1086- 1029 1102 PPOL_MLVFF POL POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29) 340-359  983- 1009- 1086- 1003 1029 1102 PPOL_MLVFP POL POLYPROTEIN FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211) 340-359  983- 1009- 1086- 1003 1029 1102 PPOL_MLVMO POL POLYPROTEIN MOLONEY MURINE LEUKEMIA VIRUS 335-354 978-998 PPOL_MLVRD POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 335-354 978-998 1004- 1081- 1024 1097 PPOL_MLVRK POL POLYPROTEIN RADIATION MURINE LEUKEMIA VIRUS 363-383 389-409 466-482 (STRAIN KAPLAN) PPOL_MMTVB POL POLYPROTEIN MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 196-219 731-751 PPOL_MPMV POL POLYPROTEIN SIMIAN MASON-PFIZER VIRUS 743-763 PPOL_OMVVS POL POLYPROTEIN OVINE LENTIVIRUS (STRAIN SA-OMVV) 369-395 469-488 632-647 1045-1063 PPOL_RSVP POL POLYPROTEIN ROUS SARCOMA VIRUS (STRAIN PRAGUE C) 719-742 PPOL_RTBV POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS (RTBV) 891-915 1058- 1083 PPOL_RTBVP POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE 891-915 1058- PHILIPPINES) 1083 PPOL_SFV1 POL POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 1) 188-204 335-356 845-869 976-996 PPOL_SFV3L POL POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 186-206 337-358 847-871 978-998 PPOL_SIVA1 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE) 895-915 PPOL_SIVAG POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE) 711-726 900-920 PPOL_SIVAI POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/ 899-926 CLONE GRI-1) PPOL_SIVAT POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) 726-741 915-935 PPOL_SIVCZ POL POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS 884-911 PPOL_SIVGB POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 680-695 869-896 PPOL_SIVMI POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) 380-407 908-935 PPOL_SIVMK POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) 380-407 712-737 906-933 PPOL_SIVS4 POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 343-370 871-898 ISOLATE) PPOL_SIVSP POL POLYPROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) 346-373 874-901 PPOL_SMRVH POL POLYPROTEIN SQUIRREL MONKEY RETROVIRUS 748-768 PPOL_SMSAV POL POLYPROTEIN SIMIAN SARCOMA VIRUS 100-120 177-200 PPOL_SOCMV ENZYMATIC POLYPROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 131-155 PPOL_SRV1 POL POLYPROTEIN SIMIAN RETROVIRUS 743-763 PPOL_VILV POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514) 488-507 651-666 971-991 PPOL_VILV1 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS1) 488-507 651-666 971-991 PPOL_VILV2 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS2) 488-507 651-666 971-991 PPP15_HCMVA LARGE STRUCTURAL PHOSPHOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 153-171 183-210 PP150 PPP28_HCMVA 28 KD STRUCTURAL PHOSPHOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 116-141 PPP41_HSV6G PHOSPHOPROTEIN P41 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 158-175 396-411 PPP65_HCMVA 65 KD LOWER MATRIX PHOSPHOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 311-333 PPP65_HCMVT 64 KD LOWER MATRIX PHOSPHOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 301-323 PPP71_HCMVA 71 KD UPPER MATRIX PHOSPHOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  79-102 PPR73_MMTVB PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 40-61 PPR73_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 40-61 PPR7L_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 44-65 PPR7R_MMTVG PROTEIN PR73 MOUSE MAMMARY TUMOR VIRUS (STRAIN GR) 40-61 PRASH_MSVHA TRANSFORMING PROTEINS P21 AND P29 HARVEY MURINE SARCOMA VIRUS 49-73 PRASH_RRASV TRANSFORMING PROTEINS P21 AND P29 RASHEED RAT SARCOMA VIRUS 56-80 PREEP_CSV REPEAT ELEMEMT PROTEIN CAMPOLETIS SONORENSIS VIRUS 14-36 PREFR_VACCV RIFAMPICIN RESISTANCE PROTEIN VACCINIA VIRUS (STRAIN WR), AND (STRAIN 274-298 316-335 517-535 COPENHAGEN) PREFR_VARV RIFAMPICIN RESISTANCE PROTEIN VARIOLA VIRUS 274-298 316-335 517-535 PREV_SIVAG REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)  2-17 PREV_SIVGB REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1) 45-72 PRIR1_ASFM2 RIBONUCLEOSIDE-DIPHOSPHATE AFRICAN SWINE FEVER VIRUS (ISOLATE 139-164 189-210 495-510 REDUCTASE MALAWI LIL 20/1) PRIR1_EBV RIBONUCLEOTIDE REDUCTASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 793-812 PRIR1_HCMVA RIBONUCLEOTIDE REDUCTASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 192-212 669-684 PRIR1_HSVI1 RIBONUCLEOTIDE REDUCTASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 415-430 587-613 PRIR1_HSVEB RIBONUCLEOTIDE REDUCTASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 60-85 266-288 668-694 PRIR1_HSVSA RIBONUCLEOTIDE REDUCTASE HERPESVIRUS SAIMIRI (STRAIN 11) 136-151 PRIR1_VACCC RIBONUCLEOTIDE REDUCTASE VACCINIA VIRUS (STRAIN COPENHAGEN) 36-51 PRIR1_VACCV RIBONUCLEOTIDE REDUCTASE VACCINIA VIRUS (STRAIN WR) 36-51 PRIR1_VARV RIBONUCLEOTIDE REDUCTASE VARIOLA VIRUS 36-51 PRIR1_VZVD RIBONUCLEOTIDE REDUCTASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 34-58 221-247 258-280 PRIR2_EBV RIBONUCLEOTIDE REDUCTASE EPSTEIN-BARR VIRUS (STRAIN B95-8) 209-236 PRIR2_HSVI1 RIBONUCLEOTIDE REDUCTASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 44-66 275-292 PRIR2_HSVIK RIBONUCLEOTIDE REDUCTASE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 43-65 245-261 274-291 PRIR2_HSV23 RIBONUCLEOTIDE REDUCTASE HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 41-63 272-289 PRIR2_HSVB3 RIBONUCLEOTIDE REDUCTASE BOVINE HERPESVIRUS TYPE 1 (STRAIN 34) 244-266 PRIR2_HSVEB RIBONUCLEOTIDE REDUCTASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 61-88 251-273 PRIR2_HSVSA RIBONUCLEOTIDE REDUCTASE HERPESVIRUS SAIMIRI (STRAIN 11) 212-239 PRIR2_SFVKA RIBONUCLEOTIDE REDUCTASE SHOPE FIBROMA VIRUS (STRAIN KASZA) 184-206 215-237 PRIR2_VACCC RIBONUCLEOTIDE REDUCTASE VACCINIA VIRUS (STRAIN COPENHAGEN) 184-206 PRIR2_VACCP RIBONUCLEOTIDE REDUCTASE VACCINIA VIRUS (STRAIN L-IVP 184-206 PRIR2_VACCV RIBONUCLEOTIDE REDUCTASE VACCINIA VIRUS (STRAIN WR) 184-206 PRIR2_VARV RIBONUCLEOTIDE REDUCTASE VARIOLA VIRUS 184-206 215-237 PRIR2_VZVD RIBONUCLEOTIDE REDUCTASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 237-258 PRMIL_AVEVR RMIL SER/THR-PROTEIN KINASE AVAIN ROUS-ASSOCIATED VIRUS TYPE 1 380-405 TRANSFORMING P PRP94_VACCV RNA-POL-ASSOCIATED TRANSCRIPTION VACCINIA VIRUS (STRAIN WR), AND 173-189 265-290 371-394 561-578 SPEC FACT (STRAIN COPENHAGEN) PRP94_VARV RNA-POL-ASSOCIATED TRANSCRIPTION VARIOLA VIRUS 173-189 265-290 371-394 561-578 SPEC FACT PRPO1_VACCC DNA-DIRECTED RNA POL 147 KD VACCINIA VIRUS (STRAIN COPENHAGEN) 76-96 304-329 848-871 1005- POLYPEPTIDE 1032 PRPO1_VACCV DNA-DIRECTED RNA POLYMERASE VACCINIA VIRUS (STRAIN WR) 76-96 304-329 848-871 147 KD POLYPE PRPO1_VARV DNA-DIRECTED RNA POLYMERASE VARIOLA VIRUS 76-96 304-329 848-871 1005- 147 KD POLYPE 1032 PRPO2_CAPVK DNA-DIRECTED RNA POLYMERASE CAPRIPOXVIRUS (STRAIN KS-1) 12-29 477-498 132 KD POLYPE PRPO2_COWPX DNA-DIRECTED RNA POLYMERASE COWPOX VIRUS 150-170 258-274 480-505 132 KD POLYPE PRPO2_VACCV DNA-DIRECTED RNA POLYMERASE VACCINIA VIRUS (STRAIN WR), AND 150-170 258-274 480-505 132 KD POLYPE (STRAIN COPENHAGEN) PRPO2_VARV DNA-DIRECTED RNA POLYMERASE VARIOLA VIRUS 150-170 258-274 480-505 132 KD POLYPE PRPO4_VACCC DNA-DIRECTED RNA POLYMERASE VACCINIA VIRUS (STRAIN COPENHAGEN) 33-48 35 KD POLYPEP PRPO4_VACCV DNA-DIRECTED RNA POLYMERASE VACCINIA VIRUS (STRAIN WR) 33-48 35 KD POLYPEP PRPO4_VARV DNA-DIRECTED RNA POLYMERASE VARIOLA VIRUS 33-55 35 KD POLYPEP PRPO6_VACCV DNA-DIRECTED RNA POLYMERASE VACCINIA VIRUS (STRAIN WR), AND 38-59 19 KD POLYPEP (STRAIN COPENHAGEN) PRPO7_VACCV DNA-DIRECTED RNA POLYMERASE VACCINIA VIRUS (STRAIN WR), AND 38-59 19 KD POLYPEP (STRAIN COPENHAGEN) PRPO7_VARV DNA-DIRECTED RNA POLYMERASE VARIOLA VIRUS 38-59 19 KD POLYPEP PRPO8_FOWP1 DNA-DIRECTED RNA POLYMERASE FOWLPOX VIRUS (STRAIN FP-1) 57-81 18 KD POLYPEP PRPOA_LELV RNA-DIRECTED RNA POLYMERASE LELYSTAD VIRUS 175-197 707-729 1164- 1233- 1513- 1531- 1955- 2120- 2802- 1180 1258 1530 1546 1977 2143 2823 3133- 3156 PRPOL_EAV RNA-DIRECTED RNA POLYMERASE EQUINE ARTERITIS VIRUS  97-118 602-617 754-774 825-851 2530- 3041- 2553 3068 PRRP1_DHVI1 RNA-DIRECTED RNA POLYMERASE DHORI VIRUS (STRAIN INDIAN/1313/61) 247-264 275-299 337-359 377-394 569-591 SUBUNIT P1 PRRP1_IAANN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 244-262 SUBUNIT P1 PRRP1_IABEI RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/BEIJING/11/56) 244-262 SUBUNIT P1 PRRP1_IADUN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/DUNEDIN/4/73) 244-262 SUBUNIT P1 PRRP1_IAGU2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/ 244-262 SUBUNIT P1 704/77) PRRP1_IAHLO RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/ 244-262 SUBUNIT P1 1416/73) PRRP1_IAHTE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/EQUINE/ 244-262 SUBUNIT P1 TENNESSEE/5/86) PRRP1_IAKIE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 244-262 SUBUNIT P1 PRRP1_IAKOR RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 244-262 SUBUNIT P1 PRRP1_IALE1 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 244-262 SUBUNIT P1 PRRP1_IALE2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 244-262 SUBUNIT P1 PRRP1_IALE3 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57) 244-262 SUBUNIT P1 PRRP1_IAMAN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/MALLARD/ 244-262 SUBUNIT P1 NEW YORK/6750/78) PRRP1_IAME8 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/MEMPHIS/8/88) 244-262 SUBUNIT P1 PRRP1_IANT6 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/NT/60/68) 244-262 SUBUNIT P1 PRRP1_IAPUE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 244-262 SUBUNIT P1 PRRP1_IASIN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 244-262 SUBUNIT P1 PRRP1_IATKM RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/ 244-262 SUBUNIT P1 833/80) PRRP1_IAVI7 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 138-163 244-262 SUBUNIT P1 PRRP1_IAWIL RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 244-262 SUBUNIT P1 PRRP1_IAWIS RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88) 244-262 SUBUNIT P1 PRRP1_IAZH3 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/ 244-262 SUBUNIT P1 126/82) PRRP1_IAZON RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81) 244-262 SUBUNIT P1 PRRP1_IAZTF RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77) 244-262 SUBUNIT P1 PRRP1_INBAC RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 205-222 SUBUNIT P1 [COLD-ADAPTED]) PRRP1_INBAD RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 205-222 SUBUNIT P1 [WILD-TYPE]) PRRP1_INBLE RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/LEE/40) 205-222 SUBUNIT P1 PRRP1_INCJJ RNA-DIRECTED RNA POLYMERASE INFLUENZA C VIRUS (STRAIN C/JJ/50) 317-341 564-591 SUBUNIT P1 PRRP2_IAANN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 534-557 SUBUNIT P2 PRRP2_IADH2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 534-557 SUBUNIT P2 PRRP2_IAFPR RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 534-557 SUBUNIT P2 ROSTOCK/34) PRRP2_IAGU2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/ 534-557 SUBUNIT P2 704/77) PRRP2_IAHLO RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/ 534-557 SUBUNIT P2 1416/73) PRRP2_IALE1 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 534-557 SUBUNIT P2 PRRP2_IALE2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 534-557 SUBUNIT P2 PRRP2_IAPI0 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/ 534-557 SUBUNIT P2 119/79) PRRP2_IAPUE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 534-557 SUBUNIT P2 PRRP2_IARUD RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/ 534-557 SUBUNIT P2 NEW JERSEY/47/ PRRP2_IASIN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 534-557 SUBUNIT P2 PRRP2_IATKM RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/ 534-557 SUBUNIT P2 833/80) PRRP2_IAWIL RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 68-86 534-557 SUBUNIT P2 PRRP2_IAZH2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/ 534-557 SUBUNIT P2 81/78) PRRP2_IAZH3 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/ 534-557 SUBUNIT P2 126/82) PRRP2_IAZI1 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 534-557 SUBUNIT P2 PRRP2_IAZTF RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/ 530-557 SUBUNIT P2 26/77) PRRP2_INBAC RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 32-54 SUBUNIT P2 [COLD-ADAPTED]) PRRP2_INBAD RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 32-54 SUBUNIT P2 [WILD-TYPE]) PRRP2_INBSI RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 32-54 SUBUNIT P2 PRRP2_INCJJ RNA-DIRECTED RNA POLYMERASE INFLUENZA C VIRUS (STRAIN C/JJ/50) 406-425 SUBUNIT P2 PRRP3_IAANN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 219-234 542-560 SUBUNIT P3 PRRP3_IABUD RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/ 219-234 SUBUNIT P3 HOKKAIDO/1/77) PRRP3_IACHI RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 219-234 542-560 SUBUNIT P3 PRRP3_IAFPR RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 219-234 542-567 SUBUNIT P3 ROSTOCK/34) PRRP3_IAFPW RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 219-234 542-560 SUBUNIT P3 WEYBRIDGE) PRRP3_IAGU2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/ 219-234 542-560 SUBUNIT P3 704/77) PRRP3_IAGUA RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/ 219-234 542-560 SUBUNIT P3 227/84) PRRP3_IAHK6 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/EQUINE/ 219-234 542-560 SUBUNIT P3 KENTUCKY/2/86) PRRP3_IAHLO RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/ 219-234 542-560 SUBUNIT P3 1416/73) PRRP3_IAHPR RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 219-234 542-560 SUBUNIT P3 PRRP3_IAKIE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 542-560 SUBUNIT P3 PRRP3_IAKOR RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 219-234 542-560 SUBUNIT P3 PRRP3_IALE1 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 219-234 542-560 SUBUNIT P3 PRRP3_IALE2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 219-234 542-560 SUBUNIT P3 PRRP3_IALE3 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57) 219-234 542-560 SUBUNIT P3 PRRP3_IAMAN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/MALLARD/ 219-234 542-560 SUBUNIT P3 NEW YORK/6750/78) PRRP3_IAME8 RNA-DIRECTED RNA POLYMERASE 219-234 542-560 SUBUNIT P3 PRRP3_IANT6 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/NT/60/68) 219-234 542-560 SUBUNIT P3 PRRP3_IAPUE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 219-234 469-485 542-560 SUBUNIT P3 PRRP3_IARUD RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/ 219-234 542-560 SUBUNIT P3 NEW JERSEY/47/ PRRP3_LASE2 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/ 219-234 542-560 SUBUNIT P3 133/82) PRRP3_IASIN RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 219-234 542-560 SUBUNIT P3 PRRP3_IATKM RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/ 219-234 542-560 SUBUNIT P3 833/80) PRRP3_IAVI7 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 219-234 542-560 SUBUNIT P3 PRRP3_IAWIL RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 219-234 542-560 SUBUNIT P3 PRRP3_IAZI1 RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 219-234 542-560 SUBUNIT P3 PRRP3_IAZTE RNA-DIRECTED RNA POLYMERASE INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77) 219-234 542-560 SUBUNIT P3 PRRP3_INBAC RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 71-86 535-561 SUBUNIT P3 [COLD-ADAPTED]) PRRP3_INBAD RNA-DIRECTED RNA POLYMERASE INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 71-86 535-561 SUBUNIT P3 [WILD-TYPE]) PRRP3_INCBE RNA-DIRECTED RNA POLYMERASE INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85) 74-96 552-571 SUBUNIT P3 PRRP3_INCJJ RNA-DIRECTED RNA POLYMERASE INFLUENZA C VIRUS (STRAIN C/JJ/50) 74-96 552-571 SUBUNIT P3 PRRP3_THOGV RNA-DIRECTED RNA POL SUBUNIT P3 THOGOTO VIRUS  85-101 PRRPA_CVH22 RNA-DIRECTED RNA POLYMERASE HUMAN CORONAVIRUS (STRAIN 229E)  82-104 410-436 858-878 1482- 1523- 1543- 2125- 2974- 3537- 1507 1542 1568 2149 2992 3559 PRRPA_CVMUD RNA-DIRECTED RNA POLYMERASE MURINE HEPATITIS VIRUS (STRAIN DEFECTIVE JHM) 440-467 PRRPA_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 917-938 1188- 1338- 1422- 1461- 1567- 1783- 2165- 2337- 1215 1354 1449 1480 1585 1806 2192 2354 2470- 2660- 2944- 3229- 3405- 3933- 2494 2676 2961 3255 3425 3954 PRRPB_BEV RNA-DIRECTED RNA POLYMERASE BERNE VIRUS 806-832 1509- 1738- 2137- 1527 1757 2154 PRRPB_CVMA5 RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN A59) 385-412 1302- 1835- 2698- 1324 1850 2723 PRRPB_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 385-412 746-770 1302- 1833- 2696- 1324 1848 2721 PRRPB_CVPFS RNA-DIRECTED RNA POLYMERASE PORCINE TRANSMISSIBLE GASTROENTERITIS 173-200 482-508 CORONAVIRUS (STRAI PRRPB_CVPR8 RNA-DIRECTED RNA POLYMERASE PORCINE RESPIRATORY CORONAVIRUS (STRAIN  80-106 86/137004/BRITISH I PRRPB_IBVB RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BRONCHITIS VIRUS 140-164 338-365 887-991 1335- 1654- (STRAIN BEAUDETTE) 1352 1674 PRRPL_BTV10 RNA-DIRECTED RNA POLYMERASE BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 21-41 146-161 PRRPL_BUNYW RNA POLYMERASE BUNYAMWERA VIRUS  78-104 303-324 440-465 1096- 1317- 1343- 1539- 1869- 2001- 1116 1338 1365 1554 1886 2027 PRRPL_EBOV RNA-DIRECTED RNA POLYMERASE EBOLA VIRUS 16-31 PRRPL_HANTV RNA POLYMERASE HANTAAN VIRUS (STRAIN 76-118) 151-168 173-194 596-611 1561- 2081- 1585 2105 PRRPL_HRSV RNA POLYMERASE BETA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS  3-19 PRRPL_HRSVA RNA POLYMERASE BETA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)  3-19 1181- 1425- 1633- 1929- 2018- 1206 1447 1653 1948 2037 PRRPL_MABVM RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN MUSOKE) 15-30 144-169 223-248 317-341 471-492 546-569 931-946 1042- 1410- 1067 1436 1711- 1990- 2071- 1731 2017 2094 PRRPL_MABVP RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN POPP) 15-30 144-169 223-248 471-492 546-569 931-946 1042- 1410- 1677- 1067 1436 1696 1715- 1805- 1990- 2071- 2223- 1731 1832 2017 2094 2246 PRRPL_MEASE RNA POLYMERASE BETA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 285-312 617-632  998- 1160- 1279- 1920- 2038- 1023 1185 1304 1940 2063 PRRPL_MUMPM RNA POLYMERASE BETA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 43-66 110-135 265-280 962-988 1100- 1132- 1601- 2128- 1124 1153 1622 2143 PRRPL_NDVB RNA POLYMERASE BETA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 704-724 1571- 1967- 2040- 1592 1994 2067 PRRPL_PI2HT RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 109-124 268-291 308-334 1309- 1562- 1985- 2215- 1335 1588 2010 2234 PRRPL_PI3H4 RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 172-193 304-330 844-861 885-900 1848- 2068- 2111- 1868 2084 2134 PRRPL_PUUMH RNA DIRECTED RNA POLYMERASE PUUMALA VIRUS (STRAIN HALLNAS B1) 173-194 596-611 1561- 1677- 2086- 1585 1696 2110 PRRPL_RABVP RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN PV) 266-286 542-563 741-762 1446- 1492- 1461 1517 PRRPL_RABVS RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN SAD B19) 266-286 542-563 741-762 1446- 1492- 1744- 1461 1517 1761 PRRPL_RDV RNA-DIRECTED RNA POLYMERASE RICE DWARF VIRUS 10-27 533-560 680-697 1293- 1316 PRRPL_RVFVZ RNA-DIRECTED RNA POLYMERASE RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) 582-609 2009- 2035 PRRPL_SEND5 RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 64-83 104-120 194-218 844-861 885-900 1405- 1844- 2107- 1420 1864 2128 PRRPL_SENDE RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN ENDERS) 14-38 664-681 705-720 1225- 1664- 1927- 1240 1684 1948 PRRPL_SENDZ RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z) 64-83 104-120 194-218 844-861 885-900 1405- 1844- 2107- 1420 1864 2128 PRRPL_SEOU8 RNA-DIRECTED RNA POLYMERASE SEOUL VIRUS (STRAIN 80-39) 151-168 173-194 394-419 596-611 1561- 2081- 1585 2105 PRRPL_SV5WR RNA POLYMERASE BETA SUBUNIT SIMIAN VIRUS 5 (STRAIN 21004-WR) 43-66 108-124 263-289 1094- 1125- 1558- 2117- 1118 1147 1580 2137 PRRPL_SYNV RNA POLYMERASE BETA SUBUNIT SONCHUS YELLOW NET VIRUS 126-146 391-406 605-627 704-731 863-883 996-911 1484- 1776- 1510 1792 PRRPL_TSWVB RNA-DIRECTED RNA POLYMERASE TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE 958-974 1385- 1778- 2609- 2678- CPNH1/BR-01) 1410 1800 2627 2702 PRRPL_UUK RNA POLYMERASE UUKUNIEMI VIRUS 698-714 923-948 1404- 1570- 2060- 1431 1591 2081 PRRPL_VSVJH RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE 156-183 312-339 903-928 1956- 2080- NEW JERSEY/STRAIN HA 1982 2097 PRRPL_VSVJO RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE 156-183 312-339 1956- 2080- NEW JERSEY/STRAIN OG 1982 2101 PRRPL_VSVSJ RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 1956- 1982 PRRPO_ACLSV RNA-DIRECTED RNA POLYMERASE APPLE CHLOROTIC LEAF SPOT VIRUS 226-247 1036- 1132- 1775- 1054 1155 1791 PRRPO_BWYVF PUTATIVE RNA-DIRECTED RNA POL BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 299-326 PRRPO_BYDVI PUTATIVE RNA-DIRECTED RNA POL BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PSI) 359-386 391-416 505-532 PRRPO_BYDVP PUTATIVE RNA-DIRECTED RNA POL BARLEY YELLOW DWARF VIRUS (ISOLATE PAV) 359-386 391-416 505-532 PRRPO_BYDVR PUTATIVE RNA-DIRECTED RNA POL BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV) 359-386 391-416 505-532 PRRPO_CARMV PROBABLE RNA-DIRECTED RNA POL CARNATION MOTTLE VIRUS  4-30  92-107 327-350 818-833 PRRPO_CGMVS PUTATIVE RNA-DIRECTED RNA POL CUCUMBER GREEN MOTTLE MOSAIC VIRUS 443-466 574-591 1017- 1523- (WATERMELON STRAIN S 1032 1539 PRRPO_CNV PROBABLE RNA-DIRECTED RNA POL CUCUMBER NECROSIS VIRUS 277-300 345-371 470-494 PRRPO_CRV PROBABLE RNA-DIRECTED RNA POL CYMBIDIUM RINGSPOT VIRUS  96-111 345-371 470-494 PRRPO_IPNVJ PUTATIVE RNA-DIRECTED RNA POL INFECTIOUS PANCREATIC NECROSIS VIRUS 221-238 (SEROTYPE JASPER) PRRPO_LYCVA RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS 35-52 597-613 639-682  988- 1234- 1770- 2077- (STRAIN ARMSTRONG) 1008 1258 1795 2099 PRRPO_LYCVW RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS 35-52 (STRAIN WE) PRRPO_MCMV PROBABLE RNA-DIRECTED RNA POL MAIZE CHLOROTIC MOTTLE VIRUS 16-41 101-127 573-599 PRRPO_PEAMV RNA-DIRECTED RNA POLYMERASE PEA ENATION MOSAIC VIRUS 144-161 316-336 431-456 558-574 PRRPO_PLAV1 PUTATIVE RNA-DIRECTED RNA POL POTATO LEAFROLL VIRUS (STRAIN 1) 331-358 576-600 PRRPO_PLRVW PUTATIVE RNA-DIRECTED RNA POL POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 331-358 576-600 PRRPO_PPMVS PUTATIVE RNA-DIRECTED RNA POL PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) 375-395 702-726 1069- 1491- 1096 1507 PRRPO_RCNMV PUTATIVE RNA-DIRECTED RNA POL RED CLOVER NECROTIC MOSAIC VIRUS 278-300 PRRPO_REOVJ RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 2/STRAIN D5/JONES) 161-176 PRRPO_REOVL RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 1/STRAIN LANG) 161-176 PRRPO_ROTBR RNA-DIRECTED RNA POL SUBUNIT VP1 BOVINE ROTAVIRUS (STRAIN RF) 132-156 247-269 844-861 904-921 942-967 1027- 1046 PRRPO_ROTBU RNA-DIRECTED RNA POL SUBUNIT VP1 BOVINE ROTAVIRUS (STRAIN UK) 132-156 247-269 844-861 904-921 942-967 1027- 1046 PRRPO_ROTPC RNA-DIRECTED RNA POL SUBUNIT VP1 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 198-223 254-274 318-337 769-784 856-878 936-952 PRRPO_ROTPG RNA-DIRECTED RNA POL SUBUNIT VP1 PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 32-53 57-72 132-156 247-269 844-861 904-921 942-967 1027- 1046 PRRPO_ROTS1 RNA-DIRECTED RNA POL SUBUNIT VP1 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 132-156 247-269 844-861 904-921 942-967 1027- 1046 PRRPO_SBMV PROBABLE RNA-DIRECTED RNA POL SOUTHERN BEAN MOSAIC VIRUS 38-64 122-143 188-206 287-302 444-466 625-643 835-846 PRRPO_TACV RNA POLYMERASE TACARIBE VIRUS  88-107 369-389 1281- 1676- 2019- 1301 1692 2046 PRRPO_TBSVC PUTATIVE RNA-DIRECTED RNA POL TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY) 277-300 345-371 470-494 PRRPO_TCV PUTATIVE RNA-DIRECTED RNA POL TURNIP CRINKLE VIRUS 31-58 241-263 PRRPO_THGMV PUTATIVE RNA-DIRECTED RNA POL TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 209-231 1085- 1100 PRRPO_TMV PUTATIVE RNA-DIRECTED RNA POL TOBACCO MOSAIC VIRUS (VULGARE) 700-724 1090- 1587- 1105 1610 PRRPO_TMVKR PUTATIVE RNA-DIRECTED RNA POL TOBACCO MOSAIC VIRUS (STRAIN KOREAN) 700-724 1090- 1587- 1105 1610 PRRPO_TMVTO PUTATIVE RNA-DIRECTED RNA POL TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) 700-724 1090- 1151- 1587- 1105 1170 1610 PRRPO_TNVA RNA-DIRECTED RNA POLYMERASE TOBACCO NECROSIS VIRUS (STRAIN A) 113-135 PRRPO_TNVD RNA-DIRECTED RNA POLYMERASE TOBACCO NECROSIS VIRUS (STRAIN D)  5-26 PRRPP_CHAV RNA POLYMERASE ALPHA SUBUNIT CHANDIPURA VIRUS (STRAIN 1653514) 124-146 PRRPP_MUMP1 RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN SBL-1) 211-238 PRRPP_MUMPE RNA POLYMEEASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN ENDERS) 212-239 PRRPP_MUMPM RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 212-239 PRRPP_NDVA RNA POLYMERASE ALPHA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA- 256-276 VICTORIA/32) PRRPP_NDVB RNA POLYMERASE ALPHA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 256-276 PRRPP_PI2H RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS 216-243 PRRPP_PI2HT RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 216-243 PRRPP_PI4HA RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 220-247 PRRPP_PI4HB RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333) 220-247 PRRPP_PIRYV RNA POLYMERASE ALPHA SUBUNIT PIRY VIRUS 134-161 PRRPP_RABVA RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN AVO1)  8-32 PRRPP_RABVC RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN CVS-11)  8-32 PRRPP_RABVE RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN ERA), AND (STRAIN PM)  8-32 216-237 PRRPP_RABVP RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN PV)  8-32 216-237 PRRPP_RABVS RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN SAD B19)  8-32 216-237 PRRPP_SV5 RNA POLYMERASE ALPHA SUBUNIT SIMIAN VIRUS 5 (STRAIN W3) 199-226 282-301 PRRPP_VSVJO RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE 197-223 NEW JERSEY/STRAIN OG PS27R_ASFB7 S273R PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 196-218 PSODC_VACCC SUPEROXIDE DISMUTASE LIKE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 19-40 PSODC_VACCV SUPEROXIDE DISMUTASE LIKE PROTEIN VACCINIA VIRUS (STRAIN WR) 19-40 PSODC_VARV SUPEROXIDE DISMUTASE LIKE PROTEIN VARIOLA VIRUS 19-40 PSPHR_AMEPV SPHEROIDIN AMSACTA MOOREI ENTOMOPOXVIRUS 58-79 627-646 PSPHR_CBEPV SPHEROIDIN PRECURSOR CHORISTONEURA BIENNIS ENTOMOPOXVIRUS 177-201 PSPII_MYXVL SERPIN 1 MYXOMA VIRUS (STRAIN LAUSANNE) 62-80 217-243 PSWFA_SPVKA SWF8A PROTEIN SWINEPOX VIRUS (STRAIN KASZA) 61-83 PTALA_BFDV LARGE T ANTIGEN BUDGERIGAR FLEDGLING DISEASE VIRUS 354-369 PTALA_POVBA LARGE T ANTIGEN POLYOMAVIRUS BK (STRAIN AS) 202-224 429-444 PTALA_POVBK LARGE T ANTIGEN POLYOMAVIRUS BK 202-224 429-444 PTALA_POVBO LARGE T ANTIGEN BOVINE POLYOMAVIRUS 385-400 PTALA_POVHA LARGE T ANTIGEN HAMSTER POLYOMAVIRUS 43-69 549-564 PTALA_POVJC LARGE T ANTIGEN POLYOMAVIRUS JC 201-223 428-443 PTALA_POVLY LARGE T ANTIGEN LYMPHOTROPIC POLYOMAVIRUS 43-69 516-542 PTALA_POVM3 LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN 3) 576-591 PTALA_POVMA LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN A2) 574-589 PTALA_POVMC LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN CRAWFORD 571-586 SMALL-PLAQUE) PTALA_POVMK LARGE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN KILHAM) 173-191 278-304 446-472 PTALA_SV40 LARGE T ANTIGEN SIMIAN VIRUS 40 (SV40) 200-222 427-442 PTAMI_POVHA MIDDLE T ANTIGEN HAMSTER POLYOMAVIRUS 43-69 PTASM_POVHA SMALL T ANTIGEN HAMSTER POLYOMAVIRUS 43-69 PTASM_POVLY SMALL T ANTIGEN LYMPHOTROPIC POLYOMAVIRUS 43-69 PTASM_POVMK SMALL T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN KILHAM) 43-69 67-89 PTATR_NPVAC TRANS-ACTIVATING TRANS REG PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 406-431 POLYHEDROSIS VIRUS PTATR_NPVBM TRANS-ACTIVATING TRANS REG PROTEIN BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS 411-436 PTATR_NPVOP TRANS-ACTIVATING TRANS REG PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 389-414 POLYHEDROSIS VIRUS PTAT_BIV06 TRANS-ACTIVATING TRANS REG PROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) 44-59 PTAT_BIV27 TRANS-ACTIVATING TRANS REG PROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) 44-59 PTAT_HTL1A TRANS-ACTIVATING TRANS REG PROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATK) 192-210 PTAT_HTL1C TRANS-ACTIVATING TRANS REG PROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE I 192-210 (CARIBBEAN ISOLATE) PTAT_HVIU4 TAT PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 18-43 (STRAIN UGANDAN/ISO PTCB_FLV T-CELL RECEPTOR BETA CHAIN PRECURSOR FELINE LEUKEMIA VIRUS  6-22  98-118 PTEGP_HSVEB PROBABLE TEGUMENT PHOSPHOPROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 101-118 PTEGP_HSVEK TEGUMENT PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 101-118 PTEGU_EBV LARGE TEGUMENT PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 143-166 767-789 814-835 1052- 1194- 1469- 1869- 3061- 3102- 1075 1220 1496 1893 3077 3126 PTEGU_HCMVA PROBABLE LARGE TEGUMENT PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 342-358 644-668 1061- 1307- 1323- 1419- 1509- 1957- 2199- 1077 1322 1345 1446 1536 1974 2221 PTEGU_HSVI1 LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 12-27 623-646 1732- 1759 PTEGU_HSV6G LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 131-152 345-365 615-636 1027- 1308- 1562- 1043 1328 1579 PTEGU_HSVEB LARGE TEGUMENT PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 432-456 559-582 1072- 1107- 1618- 1764- 2263- 1099 1132 1640 1791 2285 PTEGU_HSVSA PROBABLE LARGE TEGUMENT PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 467-491 714-737  989- 1121- 1155- 1177- 1503- 1607- 1898- 1008 1137 1174 1193 1525 1622 1915 2421- 2439 PTEGU_VZVD LARGE TEGUMENT PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 433-456 494-511 711-728 801-823 895-920 1013- 1360- 1632- 1780- 1034 1376 1657 1807 2008- 2270- 2694- 2029 2287 2711 PTERM_ADE02 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 2 63-80 593-616 PTERM_ADE05 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 5 63-80 593-616 PTERM_ADE07 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 7 63-80 580-603 PTERM_ADE12 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 12 46-63 334-350 546-569 PTOP2_ASFB7 DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 119-146 686-707 PTOP2_ASFM2 DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (ISOLATE 119-146 685-706 MALAWI LIL 20/1) PTR14_HCMVA HYPOTHETICAL PROTEIN TRL14 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 139-165 PTREL_AVIRE REL TRANSFORMING PROTEIN AVIAN RETICULOENDOTHELIOSIS VIRUS 56-74 PTYSY_VZVD THYMIDYLATE SYNTHASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 11-29 PU15R_HSV6U POSSIBLE GANCICLOVIR KINASE HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 400-415 PU2L_HSV6U PROTEIN 2L HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)  4-27 PUDPE_NPVAC UDP-GLUCOSYL TRANSFERASE PRECURSOR AUTOGRAPHA CALIFORNICA NUCLEAR 452-477 POLYHEDROSIS VIRUS PUL02_HCMVA HYPOTHETICAL PROTEIN UL2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 25-49 PUL05_HCMVA HYPOTHETICAL PROTEIN UL5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 11-37 PUL06_EBV VIRION PROTEIN BBRF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 253-268 PUL06_HCMVA HYPOTHETICAL PROTEIN UL6 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 191-208 PUL06_HSVI1 VIRION PROTEIN UL6 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 404-429 PUL06_HSVEB VIRION GENE 56 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 437-461 PUL06_HSVSA VIRION GENE 43 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 44-60 PUL07_EBV BBRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 127-149 PUL07_HCMVA HYPOTHETICAL PROTEIN UL7 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  88-108 186-209 PUL07_HSVI1 PROTEIN UL7 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 177-200 PUL07_HSVEB GENE 55 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 11-32 PUL07_HSVSA GENE 42 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 44-61 PUL07_VZVD GENE 53 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 158-176 202-224 PUL08_HSVI1 PROTEIN UL8 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 514-538 705-726 PUL08_VZVD GENE 52 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 228-255 593-616 PUL09_HSVI1 ORIGIN OF REPLICATION BINDING PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 564-584 PUL09_HSVEB ORIGIN OF REPLICATION BINDING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 171-196 612-628 PUL09_VZVD ORIGIN OF REPLICATION BINDING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 68-92 168-190 484-508 PUL11_HCMVA HYPOTHETICAL PROTEIN UL11 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 223-247 PUL13_HCMVA HYPOTHETICAL PROTEIN UL13 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 449-467 PUL14_HCMVA HYPOTHETICAL PROTEIN UL14 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 280-299 PUL14_HSVI1 HYPOTHETICAL UL14 PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  96-116 PUL14_HSVEB HYPOTHETICAL GENE 48 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 100-127 PUL16_HSVI1 PROTEIN UL16 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 22-49 PUL16_HSVEB GENE 46 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 26-43  98-119 324-339 PUL16_HSVSA GENE 33 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 69-87 278-295 PUL16_VZVD GENE 44 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 65-80 317-332 PUL17_EBV PROTEIN BGLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 373-393 PUL17_HCMVA HYPOTHETICAL PROTEIN UL17 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 60-82 PUL17_HSVI1 PROTEIN UL17 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 156-181 PUL17_HSVSA GENE 32 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  94-118 348-370 PUL19_HCMVA HYPOTHETICAL PROTEIN UL19 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 61-85 PUL20_PRVN3 UL20 MEMBRANE PROTEIN HOMOLOG PSEUDORABIES VIRUS (STRAIN NIA-3) 54-76 PUL20_VZVD GENE 39 MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 201-224 PUL21_HCMVA HYPOTHETICAL PROTEIN UL21 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  91-110 PUL21_HSVI1 PROTEIN UL21 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  98-114 130-146 PUL21_HSVIE PROTEIN UL21 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)  98-114 130-146 PUL21_HSVEB GENE 40 PROTEIN EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) 119-142 294-321 379-403 412-427 PUL21_VZVD GENE 38 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 270-293 300-327 PUL22_HCMVA HYPOTHETICAL PROTEIN UL22 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 44-67 PUL24_EBV PROTEIN BXRF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 134-155 PUL24_HCMVA HYPOTHETICAL PROTEIN UL24 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 206-222 PUL24_HSVI1 PROTEIN UL24 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 147-166 PUL24_ILTVT PROTEIN UL24 HOMOLOG INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 158-179 THORNE V882) PUL25_HCMVA HYPOTHETICAL PROTEIN UL25 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 484-500 PUL25_HSVI1 VIRION PROTEIN UL25 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  86-101 PUL25_HSVEB VIRION PROTEIN UL25 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)  89-104 130-147 PUL25_HSVSA VIRION GENE 19 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 244-265 344-368 PUL25_ILTVT 64 1 KD VIRION PROTEIN INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 270-287 316-336 THORNE V882) PUL27_HCMVA HYPOTHETICAL PROTEIN UL27 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 307-324 486-507 PUL29_HCMVA HYPOTHETICAL PROTEIN UL29 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 239-266 PUL30_HCMVA HYPOTHETICAL PROTEIN UL30 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  9-32 PUL31_EBV PROTEIN BFLF2 EPSTEIN-BARR VIRUS (STRAIN B95-8) 273-296 PUL31_HCMVA HYPOTHETICAL PROTEIN UL31 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 410-437 582-602 PUL31_HSVI1 PROTEIN UL31 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  95-116 PUL31_HSVEB GENE 29 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 104-125 288-309 PUL31_HSVSA GENE 69 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 145-161 163-190 PUL31_VZVD GENE 27 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 117-138 295-316 PUL32_HSVI1 PROBABLE MAJOR ENV HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 127-143 564-585 GLYCOPROTEIN UL32 PUL32_HSVEB MAJOR ENVELOPE GLYCOPROTEIN 300 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)  81-108 PUL32_VZVD PROBABLE MAJOR ENV GLYCOPROTEIN 26 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 553-574 PUL33_HCMVA G-PROTEIN COUPLED REC HOMOLOG UL33 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  76-102 PUL34_HCMVA HYPOTHETICAL PROTEIN UL34 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 214-232 297-321 PUL34_HSVI1 VIRION PROTEIN UL34 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 251-275 PUL34_HSVEB VIRION GENE 26 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 249-264 PUL34_HSVSA GENE 67 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 207-229 PUL34_VZVD VIRION GENE 24 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 244-266 PUL35_HCMVA HYPOTHETICAL PROTEIN UL35 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 229-252 310-329 331-348 PUL36_HCMVA HYPOTHETICAL PROTEIN UL36 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 143-168 387-410 PUL37_EBV PROTEIN BOLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 21-36 135-155 707-730  984- 1004 PUL37_HSVI1 PROTEIN UL37 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 229-252 262-277 445-467 665-681 758-777 925-947 1009- 1028 PUL37_HSVEB GENE 23 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 414-440 491-510 664-690 778-805 901-919 PUL37_HSVSA GENE 63 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  5-20 PUL37_VZVD GENE 21 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)  4-19 104-124 140-165 168-191 196-212 229-244 248-269 670-694 776-803 904-923 PUL38_HCMVA HYPOTHETICAL PROTEIN UL38 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 199-220 PUL40_HCMVA HYPOTHETICAL PROTEIN UL40 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 18-35 PUL41_HCMVA HYPOTHETICAL PROTEIN UL41 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 15-31 116-134 PUL43_HSVI1 MEMBRANE PROTEIN UL43 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 41-63 139-160 343-363 394-421 PUL43_HSVEB GENE 17 MEMBRANE PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 34-60  86-107 PUL43_VZVD GENE 15 MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)  88-114 127-146 160-180 277-299 374-400 PUL45_HSVI1 PROTEIN UL45 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 25-46 PUL45_HSV1K PROTEIN UL45 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 25-46 PUL45_HSV1M PROTEIN UL45 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN MP) 25-46 PUL47_HCMVA PROTEIN UL47 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 193-218 438-464 533-556 614-640 741-766 PUL47_HSVI1 VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 404-425 PUL47_HSVIF VIRION PROTEIN UL47 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F) 404-425 PUL47_HSVBP 80 7 KD ALPHA TRANS-INDUCING PROTEIN BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2) 681-702 PUL47_HSVE4 97 KD ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 4 580-601 PUL47_HSVEB 97 KD ALPHA TRANS-INDUCING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 587-608 PUL47_VZVD ALPHA TRANS-INDUCING FACTOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 42-58 608-627 91 8 KD PROTEN PUL49_EBV HYPOTHETICAL BFRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 336-358 PUL49_HCMVA HYPOTHETICAL PROTEIN UL49 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 248-264 528-543 PUL49_HSVI1 TEGUMENT PROTEIN UL49 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 226-252 PUL49_HSVSA HYPOTHETCAL GENE 66 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 232-253 PUL50_HCMVA PROTEIN UL50 HUMAN CYTOMEGOVIRUS (STRAIN AD169)  96-119 PUL51_HSVI1 PROTEIN UL51 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 49-66 PUL51_HSVE4 GENE 8 PROTEIN EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 169-190 PUL51_HSVEB GENE 8 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 166-189 PUL51_VZVD GENE 7 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 30-49 PUL52_EBV PROBABLE DNA REPLICATION PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 44-59 BSLF1 PUL52_HSVI1 DNA REPLICATION PROTEIN UL52 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 17-37 65-91 PUL52_HSVE4 DNA REPLICATION PROTEIN UL52 EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)  8-27 PUL52_HSVEB DNA REPLICATION PROTEIN UL52 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)  8-27 135-159 316-337 PUL52_HSVSA PROBABLE DNA REPLICATION GENE HERPESVIRUS SAIMIRI (STRAIN 11) 489-508 586-605 56 PROTEIN PUL52_VZVD PROBABLE DNA REPLICATION GENE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 446-466 645-670 6 PROTEIN PUL53_HCMVA PROTEIN UL53 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 173-188 PUL53_HSV6U UL53 PROTEIN HOMOLOG HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 64-80 PUL60_HCMVA HYPOTHETICAL PROTEIN UL60 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 120-141 PUL62_HCMVA HYPOTHETICAL PROTEIN UL62 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 62-84 178-205 PUL68_HCMVA HYPOTHETICAL PROTEIN UL68 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  87-107 PUL70_HCMVA PROBABLE DNA REPLICATION HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 225-252 409-430 499-514 626-645 770-793 PROTEIN UL70 PUL71_HCMVA HYPOTHETICAL PROTEIN UL71 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 234-250 PUL73_EBV HYPOTHETICAL BLRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 62-87 PUL73_HSVSA HYPOTHETICAL GENE 53 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 51-73 PUL74_HCMVA HYPOTHETICAL PROTEIN UL74 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 12-32 PUL77_HCMVA VIRION PROTEIN UL77 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 268-291 607-628 PUL78_HCMVA HYPOTHETICAL PROTEIN UL78 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 71-90 190-205 PUL79_HCMVA HYPOTHETICAL PROTEIN UL79 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 40-58 PUL84_HCMVA 65 KD EARLY NONSTRUCTURAL PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 100-116 PUL84_HCMVT 65 KD EARLY NONSTRUCTURAL PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 100-116 PUL87_EBV HYPOTHETICAL PROTEIN B(C)RF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) 406-422 530-557 PUL87_HCMVA HYPOTHETICAL PROTEIN UL87 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 205-231 309-335 606-628 633-653 757-781 PUL87_HSV6U HYPOTHETICAL PROTEIN 5R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 301-322 507-529 PUL87_HSVSA HYPOTHETICAL GENE 24 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 365-387 402-422 579-595 PUL88_HCMVA HYPOTHETICAL PROTEIN UL88 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 173-191 252-279 PUL88_HSV6U HYPOTHETICAL PROTEIN 6R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 150-173 PUL90_HCMVA HYPOTHETICAL PROTEIN UL90 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 35-50 PUL91_HSV6U HYPOTHETICAL PROTEIN 8R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 43-65 PUL92_HCMVA HYPOTHETICAL PROTEIN UL92 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 76-99 PUL92_HSV6U HYPOTHETICAL PROTEIN 9R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 36-55 100-119 PUL94_HCMVA PROTEIN UL94 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 49-70 PUL95_EBV HYPOTHETICAL PROTEIN BGLF3 EPSTEIN-BARR VIRUS (STRAIN B95-8) 201-223 PUL95_HCMVA HYPOTHETICAL PROTEIN UL95 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 508-526 PUL95_HSV6U HYPOTHETICAL PROTEIN 13R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)  9-30 328-346 PUL95_HSVSA HYPOTHETICAL GENE 34 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 187-209 PUL97_HCMVA GANCICLOVIR KINASE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 208-228 541-567 PULA2_HCMVA HYPOTHETICAL PROTEIN UL102 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 168-183 PULA3_HCMVA PROTEIN UL103 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 26-47 PULA4_HCMVA VIRION PROTEIN UL104 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 215-235 423-450 PULA8_HCMVA HYPOTHETICAL PROTEIN UL108 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  93-118 PULB1_HCMVA HYPOTHETICAL PROTEIN UL111 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 60-81 PULB3_HCMVA HYPOTHETICAL PROTEIN UL113 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 298-319 PULB7_HCMVA HYPOTHETICAL PROTEIN UL117 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 178-195 PULB8_HCMVA HYPOTHETICAL PROTEIN UL118 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 103-130 PULC1_HCMVA HYPOTHETICAL PROTEIN UL121 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 129-153 PULD2_HCMVA HYPOTHETICAL PROTEIN UL132 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  4-22 PUNG_FOWP1 URACIL-DNA GLYCOSYLASE FOWLPOX VIRUS (STRAIN FP-1) 12-37 PUNG_HSVEB URACIL-DNA GLYCOSYLASE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 224-250 PUNG_VACCC URACIL-DNA GLYCOSYLASE VACCINIA VIRUS (STRAIN COPENHAGEN)  82-103 PUNG_VACCV URACIL-DNA GLYCOSYLASE VACCINIA VIRUS (STRAIN WR)  82-103 PUNG_VARV URACIL-DNA GLYCOSYLASE VARIOLA VIRUS  82-103 PUNG_VZVD URACIL-DNA GLYCOSYLASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 217-243 PUS02_HSVEB GENE 68 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 48-63 PUS02_HSVEK US1 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) 48-63 PUS02_PRVN3 PROTEIN US2 HOMOLOG PSEUDORABIES VIRUS (STRAIN NIA-3) 120-136 PUS03_HCMVA HQLF1 PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 24-39 PUS05_HSVI1 PUTATIVE GLYCOPROTEIN US5 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 53-70 PUS05_HSV2 PUTATIVE GLYCOPROTEIN US5 HERPES SIMPLEX VIRUS (TYPE 2) 53-70 PUS09_HCMVA HYPOTHETICAL PROTEIN HXLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 179-206 PUS11_HCMVA HYPOTHETICAL PROTEIN HXLF1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  98-113 PUS12_HCMVA HYPOTHETICAL PROTEIN HVLF6 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 29-50 113-135 195-222 PUS13_HCMVA HYPOTHETICAL PROTEIN HVLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 11-33 208-231 PUS14_HCMVA HYPOTHETICAL PROTEIN HVLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 236-260 PUS15_HCMVA HYPOTHETICAL PROTEIN HVLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 378-402 443-466 PUS16_HCMVA HYPOTHETICAL PROTEIN HVLF2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 151-174 243-267 PUS17_HCMVA HYPOTHETICAL PROTEIN HVLF1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 110-126 PUS19_HCMVA MEMBRANE PROTEIN HWLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 120-142 178-202 214-232 PUS21_HCMVA HYPOTHETICAL PROTEIN HWLF2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 41-67 155-182 PUS22_HCMVA EARLY NUCLEAR PROTEIN HWLF1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 270-292 PUS23_HCMVA HYPOTHETICAL PROTEIN HHLF7 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 292-310 PUS24_HCMVA HYPOTHETICAL PROTEIN HHLF6 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 352-373 PUS28_HCMVA G-PROTEIN COUPLED REC HOMOLOG US28 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 34-49 140-160 PUS28_HCMVT G-PROTEIN COUPLED REC HOMOLOG US28 HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 34-49 140-160 PUS29_HCMVA HYPOTHETICAL PROTEIN HHRF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 246-269 PUS30_HCMVA HYPOTHETICAL PROTEIN HHRF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 102-128 208-233 PUS33_HCMVA HYPOTHETICAL PROTEIN HHLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 41-59 PV07K_LSV 7 KD PROTEIN LILY SYMPTOMLESS VIRUS 27-46 PV07K_NMV 7 KD PROTEIN POTATO VIRUS S (STRAIN PERUVIAN) 28-49 PV07K_PVSP 7 KD PROTEIN POTATO VIRUS X (PVX) 31-48 PV07K_PVX 7 KD PROTEIN POTATO VIRUS X (STRAIN X3) 31-48 PV07K_PVXX3 7 KD PROTEIN POTATO VIRUS X (STRAIN XC) (STRAIN CP) 31-48 PV117_ASFL5 LIS 121-1 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN LIS57) 73-94 PV121_ASFL5 125 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN) 59-79 PV12K_PVMR 12 KD PROTEIN POTATO VIRUS M (STRAIN RUSSIAN) 79-96 PV13K_TRVPL 16 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN PLB) 24-51 PV143_NPVAC HELICASE AUTOGRAPHA CALIFORNICA NUCLEAR  79-102 846-863 1013- POLYHEDROSIS VIRUS 1037 PV14K_BSMV 14 KD PROTEIN BARLEY STRIPE MOSAIC VIRUS (BSMV) 14-29 80-99 PV18K_MLVAB 18 KD PROTEIN ABELSON MURINE LEUKEMIA VIRUS 29-44 128-154 PV19R_VACCV PROTEIN B19 VACCINIA VIRUS (STRAIN WR) 114-132 152-172 PV1A_BBMV 1A PROTEIN BROAD BEAN MOTTLE VIRUS 196-220 752-771 PV1A_BMV 1A PROTEIN BROME MOSAIC VIRUS 747-767 PV1A_CCMV 1A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS 744-763 PV1A_CMVFN 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 775-800 PV1A_CMVO 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN O) 775-800 PV1A_CMVQ 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Q) 774-799 PV1A_PSVJ 1A PROTEIN PEANUT STUNT VIRUS (STRAIN J) 472-493 783-808 PV23K_HSVTH 23 5 KD PROTEIN TURKEY HERPESVIRUS (STRAIN H2) 176-191 PV28K_PLRV1 28 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) ( 60-76 192-207 PV28K_PLRVW 28 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) 60-76 192-207 PV29K_BWYVF 29 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) 22-43 136-157 PV29K_PEBV 29 6 KD PROTEIN PEA EARLY BROWNING VIRUS 114-132 PV2A_BMV 2A PROTEIN BROME MOSAIC VIRUS 285-303 759-777 PV2A_CCMV 2A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS 296-314 PV2A_TAV 2A PROTEIN TOMATO ASPERMY VIRUS 234-255 PV30K_TRVTC 29 1 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN TCM) 62-82 PV31K_TOBSV 31 7 KD PROTEIN TOBACCO STREAK VIRUS (STRAIN WC) 226-250 PV362_ASFB7 K′362 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 145-164 PV375_ASFL5 LIS 375 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN LIS57) 114-135 PV382_ASFL5 LIS 382 PROTEIN AFRICAN SWINE FRVER VIRUS (STRAIN LIS57) 114-135 PV3A_CCMV COWPEA CHLOROTIC MOTTLE VIRUS 160-187 PV3A_CMVFN 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) 214-235 PV3A_CMVM 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN M) 214-235 PV3A_CMVO 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN O) 214-235 PV3A_CMVQ 3A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Q) 214-235 PV3A_CMVY CUCUMBER MOSAIC VIRUS (STRAIN Y) 214-235 PV3A_IBVB 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS  5-28 (STRAIN BEAUDETTE) PV3A_IBVM 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41)  5-28 PV3A_IBVP3 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN  5-28 PORTUGAL/322/82) PV3A_IBVU5 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN  5-28 UK/183/66) PV3A_TAV 3A PROTEIN TOMATO ASPERMY VIRUS 147-168 PV58K_BSMV 58 KD PROTEIN BARLEY STRIPE MOSAIC VIRUS 320-340 PV66K_BWYVF PROTEIN 6B CANINE ENTERIC CORONA VIRUS (STRAIN K378)  97-116 PV70K_TYMVA 69 KD PROTEIN TURNIP YELLOW MOSAIC VIRUS (AUSTRALIAN ISOLATE) 12-35 PV90K_AMVLE 90 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN) 44-59 PVA04_VACCC PROTEIN A4 VACCINIA VIRUS (STRAIN COPENHAGEN) 217-244 PVA04_VACCV PROTEIN A4 VACCINIA VIRUS (STRAIN WR) 217-244 PVA04_VARV PROTEIN A4 VARIOLA VIRUS 201-234 PVA09_VACCC PROTEIN A9 VACCINIA VIRUS (STRAIN COPENHAGEN) 41-66 PVA09_VARV PROTEIN A9 VARIOLA VIRUS 41-66 PVA11_VACCC PROTEIN A11 VACCINIA VIRUS (STRAIN COPENHAGEN) 23-44 140-159 299-317 PVA11_VARV PROTEIN A11 VARIOLA VIRUS 23-44 141-160 300-318 PVA14_VACCC PROTEIN A14 VACCINIA VIRUS (STRAIN COPENHAGEN) 39-62 PVA14_VARV PROTEIN A14 VARIOLA VIRUS 39-62 PVA16_VACCC PROTEIN A16 VACCINIA VIRUS (STRAIN COPENHAGEN) 341-362 PVA16_VARV PROTEIN A16 VARIOLA VIRUS 340-361 PVA18_VACCC 56 KD ABORTIVE LATE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 429-447 PVA18_VACCV 56 KD ABORTIVE LATE PROTEIN VACCINIA VIRUS (STRAIN WR) 429-447 PVA18_VARV 56 KD ABORTIVE LATE PROTEIN VARIOLA VIRUS 429-447 PVA20_VACCC PROTEIN A20 VACCINIA VIRUS (STRAIN COPENHAGEN) 107-131 193-209 PVA20_VARV PROTEIN A20 VARIOLA VIRUS 107-131 193-209 PVA23_VARV PROTEIN A23 VARIOLA VIRUS 58-82 PVA28_VACCV PROTEIN A28 VACCINIA VIRUS (STRAIN WR), AND 53-76 (STRAIN COPENHAGEN) PVA28_VARV PROTEIN A28 VARIOLA VIRUS 53-46 PVA32_VACCV PROTEIN A32 VACCINIA VIRUS (STRAIN WR), AND 205-220 (STRAIN COPENHAGEN) PVA32_VARV PROTEIN A32 VARIOLA VIRUS 175-190 PVA35_VACCC PROTEIN A35 PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 33-49 PVA35_VACCV PROTEIN A35 PRECURSOR VACCINIA VIRUS (STRAIN WR) 33-49 141-164 PVA37_VACCC PROTEIN A37 VACCINIA VIRUS (STRAIN COPENHAGEN) 66-90 PVA37_VACCV PROTEIN A37 VACCINIA VIRUS (STRAIN WR) 66-90 PVA40_VACCC PROTEIN A40 VACCINIA VIRUS (STRAIN COPENHAGEN)  4-30 PVA41_VACCC PROTEIN A41 PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 47-71 PVA41_VACCV PROTEIN A41 PRECURSOR VACCINIA VIRUS (STRAIN WR) 47-71 PVA41_VARV PROTEIN A41 PRECURSOR VARIOLA VIRUS 47-71 PVA47_VACCC PROTEIN A47 VACCINIA VIRUS (STRAIN COPENHAGEN) 59-79 201-226 PVA47_VACCV PROTEIN A47 VACCINIA VIRUS (STRAIN WR) 59-79 201-226 PVA47_VARV PROTEIN A47 VARIOLA VIRUS 59-79 201-226 PVA55_VACCC PROTEIN A55 VACCINIA VIRUS (STRAIN COPENHAGEN) 247-266 384-404 PVA55_VACCV PROTEIN A55 VACCINIA VIRUS (STRAIN WR) 247-266 384-404 PVAL1_BCTV AL1 PROTEIN BEET CURLY TOP VIRUS 56-75 PVAL1_CLVK AL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 55-74 PVAL1_CLVN AL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 55-74 PVAL3_BCTV AL3 PROTEIN BEET CURLY TOP VIRUS  82-108 PVAL3_CLVK AL3 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 77-97 PVAL3_CLVN AL3 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 77-97 PVAL3_TYLCM AL3 PROTEIN TOMATO YELLOW LEAF CURL VIRUS (STRAIN 78-97 MARMANDE) PVAL3_TYLCV AL3 PROTEIN TOMATO YELLOW LEAF CURL VIRUS 77-97 PVAT_CAMVC APHID TRANSMSISION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 134-157 PVAT_CAMVD APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 134-157 PVAT_CAMVE APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 134-157 PVAT_CAMVN APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 134-157 PVAT_CAMVP APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) 134-157 PVAT_CAMVS APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 134-157 PVAT_CAMVW APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN W260) 34-60 PVAT_CERV APHID TRANSMISSION PROTEIN CARNATION ETCHED RING VIRUS 141-161 PVAT_FMVD APHID TRANSMISSION PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 132-159 PVB02_VACCC PROTEIN B2 VACCINIA VIRUS (STRAIN COPENHAGEN) 155-170 PVB02_VACCV PROTEIN B2 VACCINIA VIRUS (STRAIN WR) 155-170 PVB04_VACCC PROTEIN B4 VACCINIA VIRUS (STRAIN COPENHAGEN) PVB04_VACCV PROTEIN B4 VACCINIA VIRUS (STRAIN WR) 489-511 PVB04_VARV PROTEIN B4 VARIOLA VIRUS 489-511 PVB05_VACC0 PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN LC16MO) 251-271 PRECUSOR PVB05_VACCC PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 251-271 PRECUSOR PVB05_VACCL PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN LISTER) 251-271 PRECUSOR PVB05_VACCV PLAQUE-SIZE/HOST RANGE PROTEIN VACCINIA VIRUS (STRAIN WR) 251-271 PRECUSOR PVB06_VACCV PROTEIN B6 VACCINIA VIRUS (STRAIN WR), AND 59-82 (STRAIN COPENHAGEN) PVB15_VACCC PROTEIN B15 VACCINIA VIRUS (STRAIN COPENHAGEN) 121-143 PVB15_VACCV PROTEIN B15 VACCINIA VIRUS (STRAIN WR) 121-143 PVB15_VARV PROTEIN B15 VARIOLA VIRUS 121-143 PVB17_VACCC PROTEIN B17 VACCINIA VIRUS (STRAIN COPENHAGEN) 157-179 PVB17_VACCV PROTEIN B17 VACCINIA VIRUS (STRAIN WR) PVBL1_CLVK BL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 34-51 PVBL1_CLVN BL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 34-51 PVBL1_SLCV BL1 PROTEIN SQUASH LEAF CURL VIRUS 245-268 PVBR1_ABMVW BR1 PROTEIN ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA) 166-191 PVBR1_BGMV BR1 PROTEIN BEAN GOLDEN MOSAIC VIRUS 166-191 PVBR1_PYMVV BR1 PROTEIN POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA) 166-191 PVBR1_SLCV BR1 PROTEIN SQUASH LEAF CURL VIRUS 193-218 PVC01_VACCC PROTEIN C1 VACCINIA VIRUS (STRAIN COPENHAGEN) 70-90 PVC01_VACCV PROTEIN C1 VACCINIA VIRUS (STRAIN WR) 75-95 PVC01_VARV PROTEIN C1 VARIOLA VIRUS 58-78 PVC02_SFVKA HYPOTHETICAL PROTEIN C2 SHOPE FIBROMA VIRUS (STRAIN KASZA)  8-31 PVC03_SFVKA G-PROTEIN COUPLED RECEPTOR SHOPE FIBROMA VIRUS (STRAIN KASZA)  98-123 179-197 HOMOLOG C3 PVC04_VACCC PROTEIN C4 VACCINIA VIRUS (STRAIN COPENHAGEN) 182-209 PVC04_VACCV PROTEIN C4 VACCINIA VIRUS (STRAIN WR) 183-208 PVC06_SFVKA HYPOTHETICAL PROTEIN C6 SHOPE FIBROMA VIRUS (STRAIN KASZA) 20-47 PVC08_SFVKA HYPOTHETICAL PROTEIN C8 SHOPE FIBROMA VIRUS (STRAIN KASZA) 14-30 PVC09_VACCC PROTEIN C9 VACCINIA VIRUS (STRAIN COPENHAGEN) 40-59 PVC09_VACCV PROTEIN C9 VACCINIA VIRUS (STRAIN WR) 40-59 PVC10_SFVKA HYPOTHETICAL PROTEIN C10 SHOPE FIBROMA VIRUS (STRAIN KASZA)  85-109 PVC10_VACCC PROTEIN C10 VACCINIA VIRUS (STRAIN COPENHAGEN) 42-64 PVC10_VACCV PROTEIN C10 VACCINIA VIRUS (STRAIN WR) 42-64 PVC10_VARV PROTEIN C10 VARIOLA VIRUS 42-64 PVC16_VACCC PROTEIN C16/B22 VACCINIA VIRUS (STRAIN COPENHAGEN) 41-68 PVC17_VACCC PROTEIN C17/B23 VACCINIA VIRUS (STRAIN COPENHAGEN) 301-326 PVC21_VACCC PROTEIN C21/D27 VACCINIA VIRUS (STRAIN COPENHAGEN)  3-28 PVCAP_EBV MAJOR CAPSID PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 148-172 366-381 1072- 1095 PVCAP_HCMVA MAJOR CAPSID PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 668-684 842-860 871-893 PVCAP_HSVI1 MAJOR CAPSID PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 283-302 358-384 1137- 1152 PVCAP_HSVEB MAJOR CAPSID PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 357-383 872-898 PVCAP_HSVSA MAJOR CAPSID PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 144-168 269-287 357-372 1062- 1089 PVCAP_PRVIS MAJOR CAPSID PROTEIN PSEUDORABIES VIRUS (STRAIN INDIANA S) 335-362 PVCAP_VZVD MAJOR CAPSID PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 381-401 891-910 1156- 1176 PVCG3_NPVAC DNA-BINDING PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 60-81 POLYHEDROSIS VIRUS PVD03_VACCC PROTEIN D3 VACCINIA VIRUS (STRAIN COPENHAGEN) 12-39 PVD03_VACCV PROTEIN D3 VACCINIA VIRUS (STRAIN WR) 12-39 PVD03_VARV PROTEIN D3 VARIOLA VIRUS 12-39 PVD05_FOWP1 92 6 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 246-265 315-337 PVD05_SFVKA PROTEIN D5 SHOPE FIBROMA VIRUS (STRAIN KASZA) 54-78 171-198 PVD05_VACCC PROTEIN D5 VACCINIA VIRUS (STRAIN COPENHAGEN) 320-340 694-714 715-734 PVD05_VACCV PROTEIN D5 VACCINIA VIRUS (STRAIN WR) 320-340 694-714 715-734 PVD05_VARV PROTEIN D5 VARIOLA VIRUS 320-340 694-714 715-734 PVDBP_CAMVC DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 37-56 PVDBP_CAMVD DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 37-56 PVDBP_CAMVE DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 37-56 PVDBP_CAMVN DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 37-56 PVDBP_CAMVS DNA-BINDING PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 37-56 PVE02_VACCC PROTEIN E2 VACCINIA VIRUS (STRAIN COPENHAGEN) 70-97 355-380 540-558 PVE02_VACCV PROTEIN E2 VACCINIA VIRUS (STRAIN WR) 70-97 353-380 540-558 PVE02_VARV PROTEIN E2 VARIOLA VIRUS 70-97 355-380 540-558 PVE05_VACCC PROTEIN E5 VACCINIA VIRUS (STRAIN COPENHAGEN) 314-329 PVE05_VACCD PROTEIN E5 VACCINIA VIRUS (STRAIN DAIREN I) 324-339 PVE05_VACCV PROTEIN E5 VACCINIA VIRUS (STRAIN WR) 324-339 PVE05_VARV PROTEIN E5 VARIOLA VIRUS 324-339 PVE06_VACCC PROTEIN E6 VACCINIA VIRUS (STRAIN COPENHAGEN) 430-451 PVE06_VACCV PROTEIN E6 VACCINIA VIRUS (STRAIN WR) 430-451 PVE06_VARV PROTEIN E6 VARIOLA VIRUS 251-267 430-451 PVE08_VACCC PROTEIN E8 VACCINIA VIRUS (STRAIN COPENHAGEN) 254-270 PVE08_VACCV PROTEIN E8 VACCINIA VIRUS (STRAIN WR) 254-270 PVE08_VARV PROTEIN E8 VARIOLA VIRUS 254-270 PVE12_HPV16 PROBABLE E1 PROTEIN 2 HUMAN PAPILLOMAVIRUS TYPE 16 167-183 PVE18_NPVAC EARLY 18 5 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 106-133 POLYHEDROSIS VIRUS PVE1_BPV1 E1 PROTEIN BOVINE PAPILLOMAVIRUS TYPE 1 265-282 517-533 PVE1_BPV2 E1 PROTEIN BOVINE PAPILLOMA1VIRUS TYPE 2 265-281 516-532 PVE1_CRPVK E1 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS  7-22 (STRAIN KANSAS) PVE1_HPV11 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 258-275 311-334 PVE1_HPV13 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 308-324 PVE1_HPV18 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 264-281 317-333 344-364 PVE1_HPV31 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 237-254 PVE1_HPV33 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 238-260 PVE1_HPV39 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 334-354 PVE1_HPV41 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 363-380 PVE1_HPV42 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 304-320 PVE1_HPV58 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 238-260 PVE1_HPV6B E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 258-275 311-334 PVE1_PCPV1 E1 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 257-274 310-326 PVE1_RHPV1 E1 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 286-309 PVE2_CRPVK PROBABLE E2 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS 308-333 (STRAIN KANSAS) PVE2_HPV11 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 285-310 PVE2_HPV13 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 295-320 PVE2_HPV18 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 288-306 PVE2_HPV1A E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 284-300 PVE2_HPV2A E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 2A 311-336 PVE2_HPV31 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 294-312 PVE2_HPV33 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 275-293 PVE2_HPV35 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 289-307 PVE2_HPV39 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 292-310 PVE2_HPV42 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 321-338 PVE2_HPV57 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 57 303-328 PVE2_HPV6B E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 286-311 PVE2_PAPVD PROBABLE E2 PROTEIN DEER PAPILLOMAVIRUS 333-351 PVE2_PCPV1 E2 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 295-320 PVE2_RHPV1 E2 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 290-308 PVE4_HPV18 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 39-59 PVE4_HPV41 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 56-76 PVE4_HPV51 PROBABLE E4 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51 59-83 PVE4_RHPV1 PROBABLE E4 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 63-87 PVE5A_HPV11 PROBABLE ESA PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 19-42 PVE5A_HPV6C PROBABLE ESA PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6C 19-42 PVE5_BPV1 E5 PROTEIN BOVINE PAPILLOMAVIRUS TYPE 1, AND TYPE 2  2-26 PVE5_HPV13 PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 19-42 PVE5_HPV31 PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 31-52 PVE5_HPV42 PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 45-65 PVE5_HPV51 PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51 31-52 PVE5_HPVSB PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B  89-113 PVE5_RHPV1 PROBABLE E5 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 109-132 PVE6_BPV1 E6 PROTEIN BOVINE PAPILLOMAVIRUS TYPE 1 23-41 PVE6_CRPVK E6 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS  6-23 (STRAIN KANSAS) PVE6_HPV08 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 133-151 PVE6_HPV2A E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 2A  8-27 PVE6_HPV33 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33  9-26 PVE6_HPV35 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35  9-26 PVE6_HPV51 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51  9-26 PVE6_HPV57 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 57  8-27 PVE6_HPV58 E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58  9-26 PVE6_MMPV E6 PROTEIN MICROMYS MINUTUS PAPILLOMAVIRUS  7-33 36-60 PVE7_CRPVK E7 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS 71-88 (STRAIN KANSAS) PVE7_HPV13 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 77-93 PVE7_HPV51 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51 61-87 PVE7_HPV6B E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 20-37 PVE7_RHPV1 E7 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1  79-105 PVE94_NPVAC EARLY 94 RD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 78-99 203-222 POLYHEDROSIS VIRUS PVEF_GVTN VIRAL ENHANCING FACTOR TRICHOPLUSIA NI GRANULOSIS VIRUS 154-175 237-260 677-696 PVENV_BEV ENVELOPE PROTEIN BERNE VIRUS 62-86  87-114 PVENV_DHVI1 ENVELOPE GLYCOPROTEIN PRECURSOR DHORI VIRUS (STRAIN INDIAN/1313/61) 42-57 484-511 PVENV_EAV PROBABLE ENVELOPE PROTEIN EQUINE ARTERITIS VIRUS 25-41 PVENV_LELV PROBABLE ENVELOPE PROTEIN LELYSTAD VIRUS 27-47 148-168 PVENV_MCV1 MAJOR ENVELOPE PROTEIN MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1 61-80 PVENV_MCV2 MAJOR ENVELOPE PROTEIN MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2 61-80 306-333 PVENV_THOGV ENVELOPE GLYCOPROTEIN PRECURSOR THOGOTO VIRUS 196-221 356-383 473-491 PVETM_NPVAC ECORI-T SITE PROTEIN ETM AUTOGRAPHA CALIFORNICA NUCLEAR  82-105 POLYHEDROSIS VIRUS PVF05_VACCC 36 KD MAJOR MEMBRANE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 280-305 PRECURSOR PVF05_VACCP 36 KD MAJOR MEMBRANE PROTEIN VACCINIA VIRUS (STRAIN L-IVP) 280-305 PRECURSOR PVF05_VACCV 36 KD MAJOR MEMBRANE PROTEIN VACCINIA VIRUS (STRAIN WR) 281-306 PRECURSOR PVF05_VARV 36 KD MAJOR MEMBRANE PROTEIN VARIOLA VIRUS 280-305 PRECURSOR PVF09_VACCC PROTEIN F9 VACCINIA VIRUS (STRAIN COPENHAGEN), AND 176-200 (STRAIN L-IVP) PVF09_VACCV PROTEIN F9 VACCINIA VIRUS (STRAIN WR) 176-200 PVF09_VARV PROTEIN F9 VARIOLA VIRUS 176-200 PVF11_VACCC PROTEIN F11 VACCINIA VIRUS (STRAIN COPENHAGEN) 161-184 PVF11_VARV PROTEIN F11 VARIOLA VIRUS 161-184 PVF15_VACCC PROTEIN F15 VACCINIA VIRUS (STRAIN COPENHAGEN) 25-48 PVF15_VACCP PROTEIN F15 VACCINIA VIRUS (STRAIN L-IVP)  3-26 PVF15_VARV PROTEIN F15 VARIOLA VIRUS 28-51 PVFP1_FOWPV PROTEIN FP1 FOWLPOX VIRUS 297-323 PVFP2_FOWPV PROTEIN FP2 FOWLPOX VIRUS  88-104 PVFP7_CAPVK PROTEIN F7 CAPRIPOXVIRUS (STRAIN KS-1)  89-111 PVFP7_FOWPV PROTEIN FP7 FOWLPOX VIRUS 65-90 PVFP8_CAPVK CF8A PROTEIN CAPRIPOXVIRUS (STRAIN KS-1) 51-76 PVFUS_ORFNZ 10 KD FUSION PROTEIN ORF VIRUS (STRAIN NZ2) 29-48 PVFUS_VACC6 14 KD FUSION PROTEIN VACCINIA VIRUS (STRAIN WR 65-16) 72-94 PVG01_HSVEB HYPOTHETICAL GENE 1 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 169-195 PVG01_HSVI1 HYPOTHETICAL GENE 1 PROTEIN ICTALURID HERPESVIRUS 1 210-225 317-339 589-616 PVG01_VACCC PROTEIN G1 VACCINIA VIRUS (STRAIN COPENHAGEN) 298-318 376-395 PVG01_VACCV PROTEIN G1 VACCINIA VIRUS (STRAIN WR) 237-257 315-334 PVG01_VARV PROTEIN G1 VAIRIOLA VIRUS 298-318 376-395 PVG01_VZVD HYPOTHETICAL GENE 1 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 58-82 PVG03_VACCC PROTEIN G3 VACCINIA VIRUS (STRAIN COPENHAGEN) 50-72 PVG03_VARV PROTEIN G3 VARIOLA VIRUS 50-72 PVG04_VACCC PROTEIN G4 VACCINIA VIRUS (STRAIN COPENHAGEN) 11-33 PVG04_VARV PROTEIN G4 VARIOLA VIRUS 11-33 PVG06_VACCC PROTEIN G6 VACCINIA VIRUS (STRAIN COPENHAGEN) 31-51 PVG06_VARV PROTEIN G6 VARIOLA VIRUS 31-51 PVG08_HSVI1 HYPOTHETICAL GENE 8 MEMBRANE ICTALURID HERPESVIRUS 1 134-149 159-185 PROTEIN PVG10_HSVI1 HYPOTHETICAL GENE 10 MEMBRANE ICTALURID HERPESVIRUS 1 35-54 PROTEIN PVG10_HSVSA HERPESVIRUS SAIMIRI HERPESVIRUS SAIMIRI (STRAIN 11) 109-124 355-379 PVG11_HSVI1 HYPOTHETICAL GENE 11 ZINC-BINDING ICTALURID HERPESVIRUS 1 103-122 150-176 PROTEIN PVG12_HSVI1 HYPOTHETICAL GENE 12 ZINC-BINDING ICTALURID HERPESVIRUS 1 151-178 270-286 PROTEIN PVG12_HSVSA HYPOTHETICAL GENE 12 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 68-92 PVG19_HSVI1 HYPOTHETICAL GENE 19 MEMBRANE ICTALURID HERPESVIRUS 1  88-112 PROTEIN PVG1L_AMEPV GIL PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS 313-336 PVG1_SPV1R CAPSID PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 76-92 659-678 PVG22_HSVI1 HYPOTHETICAL GENE 22 PROTEIN ICTALURID HERPESVIRUS 1 300-327 PVG23_HSVI1 HYPOTHETICAL GENE 23 PROTEIN ICTALURID HERPESVIRUS 1 314-335 PVG27_HSVI1 HYPOTHETICAL GENE 27 PROTEIN ICTALURID HERPESVIRUS 1 158-184 PVG27_HSVSA HYPOTHETICAL GENE 27 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 209-226 PVG28_HSVI1 HYPOTHETICAL GENE 28 PROTEIN ICTALURID HERPESVIRUS 1 173-197 491-518 PVG28_HSVSA HYPOTHETICAL GENE 28 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 14-40 PVG29_HSVI1 HYPOTHETICAL GENE 29 PROTEIN ICTALURID HERPESVIRUS 1 20-42 PVG30_HSVI1 HYPOTHETICAL GENE 30 PROTEIN ICTALURID HERPESVIRUS 1 166-191 PVG32_VZVD GENE 32 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)  90-109 PVG36_HSVSA POSSIBLE TYROSINE-PROTEIN KINASE HERPESVIRUS SAIMIRI (STRAIN 11) 108-123 344-362 PVG37_HSVI1 HYPOTHETICAL GENE 37 PROTEIN ICTALURID HERPESVIRUS 1 284-299 PVG39_HSVI1 HYPOTHETICAL GENE 39 PROTEIN ICTALURID HERPESVIRUS 1 648-675 970-990 1038- 1065 PVG40_HSVI1 HYPOTHETICAL GENE 40 PROTEIN ICTALURID HERPESVIRUS 1 14-32 PVG41_HSVI1 HYPOTHETICAL GENE 41 PROTEIN ICTALURID HERPESVIRUS 1 11-38 62-81 244-260 PVG43_HSVI1 HYPOTHETICAL GENE 43 PROTEIN ICTALURID HERPESVIRUS 1 109-133 157-178 322-345 521-538 PVG46_HSVI1 PROBABLE MAJOR GLYCOPROTEIN ICTALURID HERPESYIRUS 1 134-156 580-607 937-963 1244- 1270 PVG48_HSVI1 HYPOTHETICAL GENE 48 PROTEIN ICTALURID HERPESVIRUS 1 71-93 PVG50_HSVSA PROB TRANSCRIPTION ACTIVATOR EDRF1 HERPESVIRUS SAIMIRI (STRAIN 11)  5-30 58-83 PVG51_HSVI1 HYP GENE 51 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 29-49  84-102 PVG52_HSVI1 HYPOTHETICAL GENE 52 PROTEIN ICTALURID HERPESVIRUS 1 229-252 PVG55_HSVI1 HYPOTHETICAL GENE 55 PROTEIN ICTALURID HERPESVIRUS 1 22-37 143-158 288-309 PVG55_HSVSA HYPOTHETICAL GENE 55 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  85-106 PVG56_HSVI1 HYPOTHETICAL GENE 56 PROTEIN ICTALURID HERPESVIRUS 1 1155- 1176 PVG58_HSVSA GENE 58 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 130-146 266-288 293-319 330-346 PVG59_HSVI1 HYP GENE 59 MEMBRANE PROTEIN ICTALURID HERPESVIRUS 1 142-161 267-289 PVG5_SPV4 GENE 5 PROTEIN SPIROPLASMA VIRUS 4 42-64 PVG60_HSVI1 HYPOTHETICAL GENE 60 PROTEIN ICTALURID HERPESVIRUS 1 30-51 53-75 PVG61_HSVI1 HYPOTHETICAL GENE 61 PROTEIN ICTALURID HERPESVIRUS 1  76-102 117-136 PVG63_HSVI1 HYPOTHETICAL GENE 63 PROTEIN ICTALURID HERPESVIRUS 1 238-259 336-363 PVG64_HSVI1 HYPOTHETICAL GENE 64 PROTEIN ICTALURID HERPESVIRUS 1 420-445 PVG65_HSVI1 HYPOTHETICAL GENE 65 PROTEIN ICTALURID HERPESVIRUS 1 117-137 155-173 362-378 518-533 1147- 1347- 1174 1369 PVG67_HSVI1 HYPOTHETICAL GENE 67 PROTEIN ICTALURID HERPESVIRUS 1 108-132 171-188 318-344 722-745 1005- 1072- 1315- 1029 1091 1341 PVG6_SPYIR GENE 6 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 60-82 PVG70_HSVI1 HYPOTHETICAL GENE 70 PROTEIN ICTALURID HERPESVIRUS 1 184-209 PVG71_HSVSA HYPOTHETICAL GENE 71 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  89-105 PVG72_HSVI1 HYPOTHETICAL GENE 72 PROTEIN ICTALURID HERPESVIRUS 1 445-471 535-561 720-744 1252- 1269 PVG74_HSVSA G-PROTEIN COUPLED REC HOMOLOG ECRF3 HERPESVIRUS SAIMIRI (STRAIN 11) 124-151 PVG9_SPVIR GENE 9 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 57-72 PVGF1_IBVB F1 PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS 1587- 1856- 2108- 2210- 2788- 2973- 3073- 3120- 3374- (STRAIN BEAUDETTE) 1606 1877 2127 2226 2806 2999 3090 3145 3399 3601- 3625 PVGH3_HCMVA GLYCOPROTEIN H301 PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 157-178 PVGL1_CVPR8 E1 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS 174-193 (STRAIN 86/137004/BRITISH IS PVGL2_CVBF E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN F15) 10-33 123-139 174-190 264-279  991- 1259- 1017 1280 PVGL2_CVBL9 E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN L9) 123-139 174-190 264-279 651-674  991- 1259- 1017 1280 PVGL2_CVBLY E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN LY-138) 10-33 123-139 174-190 264-279  991- 1259- 1017 1280 PVGL2_CVBM E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN MEBUS) 123-139 174-190 264-279  991- 1259- 1017 1280 PVGL2_CVBQ E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN QUEBEC) 31-47 123-139 174-190 264-279  991- 1259- 1017 1280 PVGL2_CVBV E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN VACCINE) 123-139 174-190 264-279  991- 1259- 1017 1280 PVGL2_CVH22 E2 GLYCOPROTEIN PRECURSOR HUMAN CORONAVIRUS (STRAIN 229E) 768-794 1053- 1115- 1071 1134 PVGL2_CVM4 E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN WILD TYPE 4)  95-111  999- 1267- 1317- 1025 1290 1338 PVGL2_CVMA5 E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN A59)  95-111 947-973 1215- 1265- 1238 1286 PVGL2_CVMJC E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN  95-111  999- 1267- 1317- JHMV/VARIANT CL-2) 1025 1290 1338 PVGL2_CVMUH E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN JHM)  95-111 838-884 1126- 1176- 1149 1197 PVGL2_CVPFS E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 64-83 442-457 800-816 1038- 1274- CORONAVIRUS (STRAI 1054 1297 PVGL2_CVPMI E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 64-83 442-457 506-521 800-816 1038- 1274- CORONAVIRUS (STRAI 1064 1297 PVGL2_CVPPR E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 64-83 440-455 504-519 798-814 1036- 1272- CORONAVIRUS (STRAI 1062 1295 PVGL2_CVPPU E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 64-83 440-455 504-519 798-814 1036- 1272- CORONAVIRUS (STRAI 1062 1295 PVGL2_CVPR8 E2 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS 218-233 576-592 814-840 1050- (STRAIN 86/137004/BRITISH I 1073 PVGL2_CVPRM E2 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 218-233 576-592 814-840 1050- 1073 PVGL2_CVPRT E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 64-83 440-455 504-519 798-814 1036- 1272- CORONAVIRUS (STRAI 1062 1295 PVGL2_FIPV E2 GLYCOPROTEIN PRECURSOR FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 803-819 1041- 1277- 1067 1300 PVGL2_IBV6 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82) 196-219 588-607 771-797 1056- 1094- 1081 1111 PVGL2_IBVB E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS 195-218 587-606 770-796 1055- (STRAIN BEAUDETTE) 1080 PVGL2_IBVD2 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D274) ( 196-219 588-607 771-797 1056- 1081 PVGL2_IBVD3 E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D3896) 196-219 PVGL2_IBVK E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 195-218 587-606 770-796 1055- 1080 PVGL2_IBVM E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41) 195-218 378-398 587-606 770-796 1055- 1080 PVGL2_IBVU1 E2 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 178-201 UK/123/82) PVGL2_IBVU2 E2 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 178-201 UK/142/86) PVGL2_IBVU3 E2 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN UK/167/84) 178-201 PVGLB_EBV GLYCOPROTEIN GP110 PRECURSOR EPSTEIN-BARR VIRUS (STRAIN B95-8) 732-752 PVGLB_HCMVA GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 535-558 706-732 750-777 PVGLB_HCMVT GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 536-559 707-733 751-778 PVGLB_HSVI1 GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  83-104 PVGLB_HSV1F GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)  82-103 PVGLB_HSV1K GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)  82-103 PVGLB_HSV1P GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN PATTON)  83-104 PVGLB_HSV23 GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/ STRAIN 333) 79-99 PVGLB_HSV2H GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52) 79-99 PVGLB_HSV2S GLYCOPROTEIN B PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN SA8) 65-85 PVGLB_HSV6U GLYCOPROTEIN B (FRAGMENT) HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 72-92 117-144 PVGLB_HSVB1 GLYCOPROTEIN 1 PRECURSOR BOVINE HERPESVIRUS TYPE 1 560-578 689-707 PVGLB_HSVB2 GLYCOPROTEIN B-1 PRECURSOR BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) 279-299 745-767 (BOVINE MAMMILLITIS PVGLB_HSVBC GLYCOPROTEIN 1 PRECURSOR BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER) 692-710 PVGLB_HSVE1 GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A) 736-753 (EHV-1) PVGLB_HSVE4 GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) 675-692 PVGLB_HSVEA GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) 736-753 PVGLB_HSVEB GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 736-753 PVGLB_HSVEL GLYCOPROTEIN B PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D) 736-753 PVGLB_HSVMD GLYCOPROTEIN B PRECURSOR MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B) 589-613 PVGLB_HSVSA GLYCOPROTEIN B PRECURSOR HERPESVIRUS SAIMIRI (STRAIN 11) 483-506 584-602 701-716 PVGLB_ILTV6 GLYCOPROTEIN B PRECURSOR INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 632) 256-275 597-621 740-758 PVGLB_ILTVS GLYCOPROTEIN B PRECURSOR INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN SA-2) 266-285 607-631 750-768 PVGLB_ILTVT GLYCOPROTEIN B PRECURSOR INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 266-285 607-631 750-768 THORNE V882) PVGLB_MCMVS GLYCOPROTEIN B PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 135-156 566-589 738-765 PVGLB_PRVIF GLYCOPROTEIN GII PRECURSOR PSEUDORABIES VIRUS (STRAIN 203-218 INDIANA-FUNKHAUSER/BECKER) PVGLB_VZVD GLYCOPROTEIN B PRECURSOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 522-538 PVGLC_HSVI1 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  3-22 467-493 PVGLC_HSV1K GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)  3-22 467-493 PVGLC_HSV2 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 435-458 PVGLC_HSV23 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 436-459 PVGLC_HSVBC GLYCOPROTEIN GIII PRECURSOR BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER) 475-494 PVGLC_HSVE4 GLYCOPROTEIN C PRECURSOR EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 444-459 PVGLC_HSVEB GLYCOPROTEIN C PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND 427-442 (STRAIN KENTUCK PVGLC_HSVMB SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1) 399-421 PRECURSOR PVGLC_HSVMD SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B) 399-421 PRECURSOR PVGLC_HSVMG SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN GA) 398-420 PRECURSOR PVGLC_HSVMM SECRETORY GLYCOPROTEIN GP57-65 MAREK'S DISEASE HERPESVIRUS (STRAIN MD5) 399-421 PRECURSOR PVGLC_PRVIF GLYCOPROTEIN GIII PRECURSOR PSEUDORABIES VIRUS (STRAIN 180-197 446-472 INDIANA-FUNKHAUSER/BECKER) PVGLC_VZVD GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 431-449 PVGLC_VZVS GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN SCOTT) 431-449 PVGLD_HSVI1 GLYCOPROTEIN D PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17), AND 79-94 (TYPE 1/STRAIN PVGLD_HSV2 GLYCOPROTEIN D PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 79-94 PVGLE_HSVI1 GLYCOPROTEIN E PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 104-129 413-437 PVGLE_VZVD GLYCOPROTEIN E PRECURSOR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 469-493 PVGLF_BRSVA FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS 205-221 265-287 482-504 (STRAIN A51908) PVGLF_BRSVC FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS 205-221 265-280 484-506 (STRAIN COPENHAGEN) PVGLF_BRSVR FUSION GLYCOPROTEIN PRECURSOR BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94) 205-221 265-280 484-506 PVGLF_CDVO FUSION GLYCOPROTEIN PRECURSOR CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 336-361 398-414 562-589 PVGLF_HRSV1 FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 205-221 265-280 484-506 B/STRAIN 185 PVGLF_HRSVA FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 205-221 265-280 484-506 PVGLF_HRSVL FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP 205-221 265-280 484-506 A/STRAIN LO PVGLF_HRSVR FUSION GLYCOPROTEIN PRECURSOR HUMAN RESPIRATORY SYNCYTIAL VIRUS 205-221 265-280 484-506 (STRAIN RSS-2) PVGLF_MEASE FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN EDMONSTON) and 224-245 286-302 451-477 (STRAIN HALLE) PVGLF_MEASI FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN IP-3-CA) 227-248 289-305 454-480 PVGLF_MEASY FUSION GLYCOPROTEIN PRECURSOR MEASLES VIRUS (STRAIN YAMAGATA-1) 224-245 286-302 451-477 PVGLF_MUMP1 FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN SBL-1)  5-20 276-292 446-467 PVGLF_MUMPM FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 276-292 446-467 PVGLF_MUMPR FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN RW) 276-292 446-467 PVGLF_MUMPS FUSION GLYCOPROTEIN PRECURSOR MUMPS VIRUS (STRAIN SBL)  5-20 276-292 446-467 PVGLF_NDVA FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN 273-289 AUSTRALIA-VICTORIA/32) PVGLF_NDVB FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 273-289 PVGLF_NDVH3 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN HER/33) 273-289 PVGLF_NDVH4 FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47) 273-289 PVGLF_NDVL FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN LAS/46) 273-289 PVGLF_NDVM FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51) 273-289 PVGLF_NDVQ FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66) 273-289 PVGLF_NDVT FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN TEXAS) 273-289 PVGLF_NDVTG FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G B/48) 273-289 PVGLF_NDVU FUSION GLYCOPROTEIN PRECURSOR NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67) 273-289 PVGLF_PHODV FUSION GLYCOPROTEIN PRECURSOR PHOCINE DISTEMPER VIRUS 269-285 305-326 367-383 531-558 PVGLF_PI1HC FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 456-477 PVGLF_PI2H FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (PIV-2) 450-471 PVGLF_PI2HG FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (STRAIN GREER) 450-471 PVGLF_PI2HT FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 450-471 PVGLF_PI3B FUSION GLYCOPROTEIN PRECURSOR BOVINE PARAINFLUENZA 3 VIRUS 405-426 453-474 PVGLF_PI3H4 FUSION GLYCOPROTEIN PRECURSOR HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)  2-20 283-310 453-474 PVGLF_RINDK FUSION GLYCOPROTEIN PRECURSOR RINDERPEST VIRUS (STRAIN KABETE O) 220-241 282-298 447-473 PVGLF_RINDL FUSION GLYCOPROTEIN PRECURSOR RINDERPEST VIRUS (STRAIN L) 220-241 282-298 447-473 PVGLF_SEND5 FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 460-481 PVGLF_SENDF FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN FUSHIMI) 460-481 PVGLF_SENDH FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN HARRIS) 460-481 PVGLF_SENDJ FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN HVJ) 460-481 PVGLF_SENDZ FUSION GLYCOPROTEIN PRECURSOR SENDAI VIRUS (STRAIN Z) 460-481 PVGLF_SV41 FUSION GLYCOPROTEIN PRECURSOR SIMIAN VIRUS 41 453-474 PVGLF_SV5 FUSION GLYCOPROTEIN PRECURSOR SIMIAN VIRUS 5 (STRAIN W3) 401-425 446-467 PVGLF_TRTV FUSION GLYCOPROTEIN PRECURSOR TURKEY RHINOTRACHEITIS VIRUS 175-191 452-474 PVGLG_IHNV SPIKE GLYCOPROTEIN PRECURSOR INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS 77-99 (STRAIN ROUND BUT PVGLG_RABVE SPIKE GLYCOPROTEIN PRECURSOR RABIES VIRUS (STRAIN ERA) 454-474 PVGLG_RABVH SPIKE GLYCOPROTEIN PRECURSOR RABIES VIRUS (STRAIN HEP-FLURY) 372-391 454-474 PVGLG_RABVP SPIKE GLYCOPROTEIN PRECURSOR RABIES VIRUS (STRAIN PV) 454-474 PVGLG_RABVS SPIKE GLYCOPROTEIN PRECURSOR RABIES VIRUS (STRAIN SAD B19) 454-474 PVGLG_RABVT SPIKE GLYCOPROTEIN PRECURSOR RABIES VIRUS (STRAIN STREET) 454-474 PVGLG_TRTV MAJOR SURFACE GLYCOPROTEIN G TURKEY RHINOTRACHEITIS VIRUS 199-216 PVGLG_VHSV0 SPIKE GLYCOPROTEIN PRECURSOR VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71) 406-428 PVGLH_HCMVA GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 211-237 365-382 574-598 691-712 PVGLH_HCMVT GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 210-236 364-381 573-597 690-711 PVGLH_HSVI1 GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 245-262 443-467 803-827 PVGLH_HSVIE GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM) 245-262 443-467 803-827 PVGLH_HSV6G GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 314-332 PVGLH_HSVE4 GLYCOPROTEIN H PRECURSOR EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942) 304-325 814-839 PVGLH_HSVEB GLYCOPROTEIN H PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) and 297-318 807-832 (ISOLATE HVS25A) PVGLH_HSVSA GLYCOPROTEIN H PRECURSOR HERPESVIRUS SAIMIRI (STRAIN 11) 454-479 658-679 PVGLH_MCMVS GLYCOPROTEIN H PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 670-690 PVGLI_HCMVA IE GLYCOPROTEIN PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 158-180 PVGLI_HSVI1 GLYCOPROTEIN 1 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 43-60 PVGLI_HSVEB GLYCOPROTEIN 1 PRECURSOR EQUINE HERPESVIRUS TYPE 1 44-63 PVGLI_VZVD GLYCOPROTEIN 1 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 278-297 PVGLM_BUNGE M POLYPROTEIN PRECURSOR BUNYAVIRUS GERMISTON 117-136 197-222 PVGLM_BUNL7 M POLYPROTEIN PRECURSOR BUNYAVIRUS LA CROSSE (ISOLATE L74) 31-55 81-98 190-211 1325- 1387- 1345 1410 PVGLM_BUNSH M POLYPROTEIN PRECURSOR BUNYAVIRUS SNOWSHOE HARE 31-55 81-98 190-211 1325- 1387- 1345 1410 PVGLM_BUNYW M POLYPROTEIN PRECURSOR BUNYAMWERA VIRUS 193-218 1379- 1404 PVGLM_DUGBV M POLYPROTEIN PRECURSOR DUGBE VIRUS PVGLM_HANTB M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN B-1) 355-371 692-717 900-915  999- 1019 PVGLM_HANTH M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN HOJO) 499-515 694-718 1000- 1020 PVGLM_HANTL M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN LEE) 499-515 694-719 1001- 1021 PVGLM_HANTV M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN 76-118) 499-515 694-719 1001- 1021 PVGLM_INSV M POLYPROTEIN PRECURSOR IMPATIENS NECROTIC SPOT VIRUS (INSV) 18-44 269-293 348-367 531-551 815-841 PVGLM_PHV M POLYPROTEIN PRECURSOR PROSPECT HILL VIRUS 152-171 PVGLM_PTPV M POLYPROTEIN PRECURSOR PUNTA TORO PHLEBOVIRUS 743-765  997-1016 1275- 1302 PVGLM_PUUMH M POLYPROTEIN PRECURSOR PUUMALA VIRUS (STRAIN HALLNAS B1) 155-174 509-525 712-729 PVGLM_PUUMS M POLYPROTEIN PRECURSOR PUUMALA VIRUS (STRAIN SOTKAMO) 155-174 509-525 712-729 1092- 1117 PVGLM_RVFV M POLYPROTEIN PRECURSOR RIFT VALLEY FEVER VIRUS 53-80 344-368 830-856 PVGLM_RVFVZ M POLYPROTEIN PRECURSOR RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) 53-80 344-368 830-856 1156- 1176 PVGLM_SEOU8 M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN 80-39) 355-371 692-717 900-915  999- 1019 PVGLM_SEOUR M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN R-22) 355-371 693-718 901-916 1000- 1020 PVGLM_SEOUS M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN SR-11) (SAPPORO RAT VIRUS) 355-371 693-717 900-915  999- 1019 PVGLM_UUK M POLYPROTEIN PRECURSOR UUKUNIEMI VIRUS 561-585 655-674 826-842 925-952 966-989 PVGLP_BEV PEPLOMER GLYCOPROTEIN PRECURSOR BERNE VIRUS 430-452 869-885 1099- 1546- 1124 1568 PVGLX_HSVEB GLYCOPROTEIN X PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) PVGLX_HSVEK GLYCOPROTEIN GX PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A) PVGLX_HSVEL GLYCOPROTEIN GX EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D) PVGLX_PRVRI SECRETED GLYCOPROTEIN GX PSEUDORABIES VIRUS (STRAIN RICE) 149-176 PVGLY_JUNIN GLYCOPROTEIN POLYPROTEIN PRECURSOR JUNIN ARENAVIRUS 12-38 PVGLY_LASSG GLYCOPROTEIN POLYPROTEIN PRECURSOR LASSA VIRUS (STAIN GA391) 12-38 237-258 426-448 PVGLY_LASSJ GLYCOPROTEIN POLYPROTEIN PRECURSOR LASSA VIRUS (STRAIN JOSIAH) 12-35 238-259 427-449 PVGLY_LYCVA GLYCOPROTEIN POLYPROTEIN PRECURSOR LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN 12-35 ARMSTRONG) PVGLY_LYCVW GLYCOPROTEIN POLYPROTEIN PRECURSOR LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE) 12-35  89-108 PVGLY_MOPEI GLYCOPROTEIN POLYPROTEIN PRECURSOR MOPEIA VIRUS 12-35 425-447 PVGLY_PIARV GLYCOPROTEIN POLYPROTEIN PRECURSOR PICHINDE ARENAVIRUS 12-38 441-466 PVGLY_TACV GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS 12-38 PVGLY_TACV5 GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS (STRAIN V5) 12-38 PVGLY_TACV7 GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS (STRAIN V7) 12-38 PVGLY_TACVT GLYCOPROTEIN POLYPROTEIN PRECURSOR TACARIBE VIRUS (STRAIN TRVL 11598) 12-38 PVGNB_CPMV GENOME POLYPROTEIN B COWPEA MOSAIC VIRUS 141-161 569-594 757-783 1110- 1165- 1135 1184 PVGNM_CPMV GENOME POLYPROTEIN M COWPEA MOSAIC VIRUS 311-335 741-764 PVGP2_EBV PROBABLE MEMBRANE ANTIGEN GP220 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN 657-681 HERPESVIRUS 4) PVGP3_EBV ENVELOPE GLYCOPROTEIN GP340 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN 854-878 HERPESVIRUS 4) PVGP8_EBV PROBABLE MEMBRANE ANTIGEN GP85 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN 67-88 HERPESVIRUS 4) PVGP_EBOV STRUCTURAL GLYCOPROTEIN PRECURSOR EBOLA VIRUS 34-52 537-561 653-675 PVGP_MABVM STRUCTURAL GLYCOPROTEIN PRECURSOR MARBURG VIRUS (STRAIN MUSOKE) 538-562 607-627 PVGP_MABVP STRUCTURAL GLYCOPROTEIN PRECURSOR MARBURG VIRUS (STRAIN POPP) 538-562 607-627 PVH01_VACCC PROTEIN-TYROSINE PHOSPHATASE VACCINIA VIRUS (STRAIN COPENHAGEN) 76-92 105-121 PVH01_VACCV PROTEIN-TYROSINE PHOSPHATASE VACCINIA VIRUS (STRAIN WR) 76-92 105-121 PVH01_VARV PROTEIN-TYROSINE PHOSPHATASE VARIOLA VIRUS 76-92 105-121 PVH07_VACCV LATE PROTEIN H7 VACCINIA VIRUS (STRAIN WR) 70-97 PVH07_VARV LATE PROTEIN H7 VARIOLA VIRUS 70-97 PVHEL_FXMV PROBABLE HELICASE FOXTAIL MOSAIC VIRUS 182-205 PVHEL_PMV PROBABLE HELICASE PAPAYA MOSAIC POTEXVIRUS 153-168 PVI01_VACCC PROTEIN 11 VACCINIA VIRUS (STRAIN COPENHAGEN) 120-135 PVI01_VARV PROTEIN 11 VARIOLA VIRUS 120-135 PVI03_VACCC PROTEIN 13 VACCINIA VIRUS (STRAIN COPENHAGEN) 194-220 PVI03_VACCV PROTEIN 13 VACCINIA VIRUS (STRAIN WR) 194-220 PVI03_VARV PROTEIN 13 VARIOLA VIRUS 194-220 PVI06_VACCV PROTEIN 16 VACCINIA VIRUS (STRAIN WR) 106-128 133-155 PVI06_VARV PROTEIN 16 VARIOLA VIRUS 106-128 133-155 PVI07_VACCC PROTEIN 17 VACCINIA VIRUS (STRAIN COPENHAGEN) 13-34 344-367 PVI07_VACCV PROTEIN 17 VACCINIA VIRUS (STRAIN WR) 13-34 344-367 PVI07_VARV PROTEIN 17 VARIOLA VIRUS 13-34 344-367 PVI08_VACCC PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN COPENHAGEN) 196-212 418-438 PVI08_VACCV PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN WR) 196-212 418-438 PVI08_VARV PUTATIVE RNA HELICASE 18 VARIOLA VIRUS 196-212 418-438 PVIE1_HCMVA 55 KD IMMEDIATE-EARLY PROTEIN 1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  77-100 333-350 PVIE1_HCMVT 55 KD IMMEDIATE-EARLY PROTEIN 1 HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)  77-100 333-350 PVIE2_HCMVA 45 KD IMMEDIATE-EARLY PROTEIN 2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 14-32 389-406 PVIE2_HCMVT 45 KD IMMEDIATE-EARLY PROTEIN 2 HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 14-32 388-405 PVIE2_MCMVS IMMEDIATE-EARLY PROTEIN 2 MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 251-272 PVIE3_HCMVT 30 KD IMMEDIATE-EARLY PROTEIN 2 HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 14-32 PVIEG_HSVSA IMMEDIATE-EARLY PROTEIN IE-G HERPESVIRUS SAIMIRI (STRAIN 11) 65-80 PVIEN_NPVAC IMMEDIATE-EARLY REG PROTEIN IE-N AUTOGRAPHA CALIFORNICA NUCLEAR 100-116 273-290 POLYHEDROSIS VIRUS PVIMP_EBV PROB INTEGRAL MEMBRANE PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)  75-100 123-152 203-222 BBRF3 PVIMP_HCMVA PROBABLE INTEGRAL MEMBRANE PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 68-89 190-217 PVIMP_HSVI1 PROBABLE INTEGRAL MEMBRANE PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  83-110 250-270 PVIMP_HSVEB PROBABLE INTEGRAL MEMBRANE PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 24-49  93-120 145-172 247-263 301-321 332-358 PVIMP_HSVSA INTEGRAL MEMBRANE PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  76-101 313-331 PVIMP_VZVD PROBABLE INTEGRAL MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 21-47 154-181 230-252 PVJ01_VACCC PROTEIN J1 VACCINIA VIRUS (STRAIN COPENHAGEN)  89-110 PVJ01_VACCV PROTEIN J1 VACCINIA VIRUS (STRAIN WR)  89-110 PVJ01_VARV PROTEIN J1 VARIOLA VIRUS  89-110 PVK04_VACCC PROTEIN K4 VACCINIA VIRUS (STRAIN COPENHAGEN)  87-113 208-234 319-337 PVK04_VACCV PROTEIN K4 VACCINIA VIRUS (STRAIN WR)  87-113 208-234 319-337 PVK05_VACCC PROTEIN K5 VACCINIA VIRUS (STRAIN COPENHAGEN) 106-133 PVL02_VACCC PROTEIN L2 VACCINIA VIRUS (STRAIN COPENHAGEN) 39-61 PVL02_VACCV PROTEIN L2 VACCINIA VIRUS (STRAIN WR) 39-61 PVL02_VARV PROTEIN L2 VARIOLA VIRUS 39-61 PVL03_VACCC PROTEIN L3 VACCINIA VIRUS (STRAIN COPENHAGEN) 148-164 186-208 292-315 PVL03_VACCV PROTEIN L3 VACCINIA VIRUS (STRAIN WR) 148-164 186-208 292-315 PVL03_VARV PROTEIN L3 VARIOLA VIRUS 147-163 185-207 291-314 PVL05_VACCV PROTEIN L5 VACCINIA VIRUS (STRAIN WR), AND 16-39 (STRAIN COPENHAGEN) PVL05_VARV PROTEIN L5 VARIOLA VIRUS 16-39 PVL1_CRPVK PROBABLE L1 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS 299-317 (STRAIN KANSAS) PVL1_HPV18 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 28-55 PVL1_HPV41 PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 38-63 PVL1_REOVD MAJOR CORE PROTEIN LAMBDA 1 REOVIRUS (TYPE 3/STRAIN DEARING) 327-346 351-366 752-774 PVL2_HPV08 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 254-270 PVL2_HPV11 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 32-58 PVL2_HPV13 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 33-59 PVL2_HPV16 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 16 34-60 PVL2_HPV18 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 18 33-59 PVL2_HPV1A PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 213-228 PVL2_HPV2A PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 2A  88-114 PVL2_HPV31 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 34-60 443-462 PVL2_HPV33 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 33-59  99-114 PVL2_HPV35 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 34-60 PVL2_HPV41 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 39-58 414-436 PVL2_HPV42 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 33-59 344-370 PVL2_HPV47 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 250-265 PVL2_HPV57 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 57 32-58 PLV2_HPV58 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 33-59  99-114 PVL2_HPV6B PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 33-59 PVL2_PAPVE PROBABLE L2 PROTEIN EUROPEAN ELK PAPILLOMAVIRUS 30-56 PVL2_RHPV1 PROBABLE L2 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 45-71 PVL3_HPV5B PROBABLE L3 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B  6-28 PVL3_REOVD MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 3/STRAIN DEARING 714-737 PVL3_REOVJ MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 2/STRAIN D5/JONES) 714-737 1213- 1236 PVL3_REOVL MINOR CORE PROTEIN LAMBDA 3 REOVIRUS (TYPE 1/STRAIN LANG) 714-737 PVL96_IRVI L96 PROTEIN TIPULA IRIDESCENT VIRUS (TIV) (INSECT IRIDESCENT 144-170 196-220 686-711 845-861 VIRUS TYPE 1) PVM01_VACCC PROTEIN M1 VACCINIA VIRUS (STRAIN COPENHAGEN) 134-159 177-195 281-302 PVM01_VACCV PROTEIN M1 VACCINIA VIRUS (STRAIN WR)  83-108 126-144 230-251 PVM01_VARV PROTEIN M1 VARIOLA VIRUS  81-106 124-142 228-249 PVM1_REOVD MINOR VIRION STRUCTURAL PROTEIN MU-2 REOVIRUS (TYPE 3/STRAIN DEARING) 141-168 227-245 280-304 324-347 414-436 454-477 PVM1_REOVL MINOR VIRION STRUCTURAL PROTEIN MU-2 REOVIRUS (TYPE 1/STRAIN LANG) 141-168 227-245 280-304 414-436 454-477 PVM21_REOVD MAJOR VIRION STRUC PROTEIN MU-1/MU-1C REOVIRUS (TYPE 3/STRAIN DEARING) 168-192 PVM22_REOVD MAJOR VIRION STRUCT PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 168-192 MU-1/MU-1C PVM2_REOVJ MAJOR VIRION STRUC PROTEIN MU-1/MU-1C REOVIRUS (TYPE 2/STRAIN D5/JONES) 168-192 PVM2_REOVL MAJOR VIRION STRUC PROTEIN MU-1/MU-1C REOVIRUS (TYPE 1/STRAIN LANG) 168-192 PVM3_REOVD MAJOR NONSTRUCTURAL PROTEIN MU-NS REOVIRUS (TYPE 3/STRAIN DEARING) 304-326 521-540 PVMAT_BRSVA MATRIX PROTEIN BOVINE RESPIRATORY SYNCYTIAL VIRUS 37-62 (STRAIN A51908) PVMAT_CDVO MATRIX PROTEIN CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) 148-165 283-309 PVMAT_HRSVA MATRIX PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 44-62 139-160 PVMAT_LPMV MATRIX PROTEIN LA PIEDAD-MICHOACAN-MEXICO VIRUS 311-338 PVMAT_MEASE MATRIX PROTEIN MEASLES VIRUS (STRAIN EDMONSTON) 283-309 PVMAT_MEASH MATRIX PROTEIN MEASLES VIRUS (STRAIN HALLE) 283-309 PVMAT_MEASI MATRIX PROTEIN MEASLES VIRUS (STRAIN IP-3-CA)  87-111 PVMAT_MEASU MATRIX PROTEIN MEASLES VIRUS (STRAIN HU2) 283-309 PVMAT_MUMP1 MATRIX PROTEIN MUMPS VIRUS (STRAIN SBL-1) 191-207 227-250 310-330 PVMAT_MUMPS MATRIX PROTEIN MUMPS VIRUS (STRAIN SBL) 191-207 227-250 310-330 PVMAT_NDVA MATRIX PROTEIN NEWCASTLE DISEASE VIRUS (STRAIN 135-151 190-208 309-329 AUSTRALIA-VICTORIA/32) PVMAT_NDVB MATRIX PROTEIN NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) 135-151 190-208 309-329 PVMAT_PI1HC MATRIX PROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 195-217 PVMAT_PI2HT MATRIX PROTEIN HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) 132-154 189-205 308-328 (PIV-2) PVMAT_PI4HA MATRIX PROTEIN HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) 312-332 (PIV-4A) PVMAT_PI4HB MATRIX PROTEIN HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333) 312-332 (PIV-4B) PVMAT_RINDK MATRIX PROTEIN RINDERPEST VIRUS (STRAIN KABETE O) 200-221 239-260 283-309 PVMAT_SENDF MATRIX PROTEIN SENDAI VIRUS (STRAIN FUSHIMI) 195-217 PVMAT_SENDH MATRIX PROTEIN SENDAI VIRUS (STRAIN HARRIS) 195-217 PVMAT_SENDZ MATRIX PROTEIN SENDAI VIRUS (STRAIN Z) 195-217 PVMAT_SSPVB MATRIX PROTEIN SUBACUTE SCLEROSING PANENCEPHALITIS VIRUS 283-309 314-338 (STRAIN BIKEN) PVMAT_SV41 MATRIX PROTEIN SIMIAN VIRUS 41 132-154 189-205 308-328 PVMAT_SV5 MATRIX PROTEIN SIMIAN VIRUS 5 (STRAIN W3)  98-114 132-148 308-335 PVMAT_SVCV MATRIX PROTEIN SPRING VIREMIA OF CARP VIRUS (RHABDOVIRUS 141-167 CARPIA) PVMAT_TRTV MATRIX PROTEIN TURKEY RHINOTRACHEITIS VIRUS 122-143 PVME1_CVBM E1 GLYCOPROTEIN BOVINE CORONAVIRUS (STRAIN MEBUS)  9-36 137-161 171-190 PVME1_CVH22 E1 GLYCOPROTEIN HUMAN CORONAVIRUS (STRAIN 229E) 136-155 PVME1_CVHOC E1 GLYCOPROTEIN HUMAN CORONAVIRUS (STRAIN OC43)  9-36 64-85 137-161 PVME1_CVMA5 E1 GLYCOPROTEIN MURINE CORONAVIRUS MHV (STRAIN A59) 10-37 PVME1_CVMJH E1 GLYCOPROTEIN MURINE CORONAVIRUS MHV (STRAIN JHM) 10-37 PVME1_CVPFS E1 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 174-193 CORONAVIRUS (STRAI PVME1_CVPPU E1 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS 169-193 174-193 CORONAVIRUS (STRAI PVME1_CVPRM E1 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 174-193 PVME1_CVTKE E1 GLYCOPROTEIN TURKEY ENTERIC CORONAVIRUS  9-36 137-161 171-190 PVME1_IBV6 E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82) 74-98 PVME1_IBVB E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS  74-101 (STRAIN BEAUDETTE) PVME1_IBVB2 E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS  74-101 (STRAIN BEAUDETTE M42) PVME1_IBVK E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523) 74-98 PVMEM_EBV PROBABLE MEMBRANE PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 131-157 178-203 PVMP_CAMVC MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) 118-134 147-164 183-201 PVMP_CAMVD MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) 118-134 147-164 183-201 PVMP_CAMVE MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) 118-134 147-164 183-201 PVMP_CAMVN MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) 118-134 147-164 183-201 PVMP_CAMVS MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) 118-134 147-164 183-201 PVMP_CAMVW MOVEMENT PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN W260) 118-134 147-164 183-201 PVMP_CERV MOVEMENT PROTEIN CARNATION ETCHED RING VIRUS 293-318 PVMP_FMVD MOVEMENT PROTEIN FIGWORT MOSAIC VIRUS (STRAIN DXS) 115-131 180-198 PVMP_SOCMV MOVEMENT PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 122-147 273-299 PVMSA_HPBDB MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK 201-228 269-295 ISOLATE S5) PVMSA_HPBDC MAJOR SURFACE ANFIGEN PRECURSOR DUCK HEPATITIS B VIRUS (STRAIN CHINA) 194-221 268-294 PVMSA_HPBDU MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS 157-184 231-257 PVMSA_HPBDW MAJOR SURFACE ANTIGEN PRECURSOR DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK 194-221 269-295 ISOLATE S31) PVMSA_HPBGS MAJOR SURFACE ANTIGEN PRECURSOR GROUND SQUIRREL HEPATITIS VIRUS 209-236 271-295 380-395 PVMSA_HPBHE MAJOR SURFACE ANTIGEN PRECURSOR HERON HEPATITIS B VIRUS 236-262 293-320 PVMSA_HPBV0 MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS 11-28 70-96 PVMSA_HPBV2 MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADW2) 185-202 244-270 PVMSA_HPBV4 MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADR4) 185-202 244-270 PVMSA_HPBV9 MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 991) 244-270 PVMSA_HPBVA MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (STRAIN ALPHA1) 174-191 233-259 PVMSA_HPBVD MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE AD) 11-28 70-96 PVMSA_HPBVI MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 233-259 INDONESIA/PIDW420) PVMSA_HPBVJ MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 174-191 233-259 JAPAN/PJDW233) PVMSA_HPBVL MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (STRAIN LSH/CHIMPANZEE ISOLATE 174-191 233-259 PVMSA_HPBVN MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN NC-1) 11-28 70-96 PVMSA_HPBVO MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN 174-191 233-259 OKINAWA/PODW282) PVMSA_HPBVP MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN 185-202 244-270 PHILIPPINO/PFDW294) PVMSA_HPBVR MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADR) 185-202 244-270 PVMSA_HPBVS MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE AR) 11-28 70-96 PVMSA_HPBVW MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADW) 174-191 233-259 PVMSA_HPBVY MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE AYW) 174-191 233-259 PVMSA_HPBVZ MAJOR SURFACE ANTIGEN PRECURSOR HEPATITIS B VIRUS (SUBTYPE ADYW) 174-191 233-259 PVMSA_WHV1 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 1 207-234 269-293 378-393 PVMSA_WHV59 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 59 212-239 274-298 383-398 PVMSA_WHV7 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 7 212-239 274-298 383-398 PVMSA_WHV8 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS 8 212-239 274-298 383-398 PVMSA_WHV8I PROB MAJOR SURFACE ANTIGEN PREC WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE) 212-239 274-298 383-398 PVMSA_WHVW6 MAJOR SURFACE ANTIGEN PRECURSOR WOODCHUCK HEPATITIS VIRUS W64 (ISOLATE PWS23) 125-149 234-249 PVMT2_IAANN MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 25-46 PVMT2_IABAN MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79) 25-46 PVMT2_IAFOW MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 25-46 PVMT2_IAFPR MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 25-46 ROSTOCK/34) PVMT2_IAFPW MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE 25-46 VIRUS/WEYBRIDGE) PVMT2_IALE1 MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 25-46 PVMT2_IALE2 MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 25-46 PVMT2_IAMAN MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/MALLARD/ 25-46 NEW YORK/6750/78) PVMT2_IAPUE MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 25-46 PVMT2_IASIN MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 25-46 PVMT2_IAUDO MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 25-46 PVMT2_IAWIL MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 25-46 PVMT9_MYXVL MT-9 PROTEIN MYXOMA VIRUS (STRAIN LAUSANNE) 226-241 PVN34_ROTBS NONSTRUCTURAL PROTEIN NS34 BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 334-351 PVNBP_PVSP 10 7 KD PROTEIN POTATO VIRUS S (STRAIN PERUVIAN) 21-36 PVNB_INBBE NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87) 13-39 PVNB_INBHK NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73) 13-39 PVNB_INBLE NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/LEE/40) 13-39 PVNB_INBLN NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/LENINGRAD/179/86) 13-39 PVNB_INBMD NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/MARYLAND/59) 13-39 PVNB_INBMF NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/MEMPHIS/3/89) 13-39 PVNB_INBOR NB GLYCOPROTEIN INFLUENZA B VIRUS (STRAIN B/OREGON/5/80) 13-39 PVNCS_ADVG NONCAPSID PROTEIN NS-1 ALUETIAN MINK DISEASE PARVOVIRUS (STRAIN G) 81-96 169-190 PVNCS_AEDEV NONCAPSID PROTEIN NS-1 AEDES DENSONUCLEOSIS VIRUS (STRAIN 675-690 GKV 002 002) (AEDES DENS PVNCS_PAVHB NONCAPSID PROTEIN NS-1 HUMAN PARAVOVIRUS B19 575-597 PVNCS_PAVHH NONCAPSID PROTEIN NS-1 HAMSTER PARAVOVIRUS H1 140-165 PVNS1_AHSV4 NONSTRUCTURAL PROTEIN NS1 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 256-272 4/STRAIN VACCINE) PVNS1_IAALA NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77) 31-50 114-137 167-192 PVNS1_IAANN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 31-50 114-137 167-192 PVNS1_IACAO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82) 19-38 PVNS1_IACHI NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 31-50 114-137 167-192 PVNS1_IACKG NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/ 31-50 167-192 GERMANY/N/49) PVNS1_IACKJ NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24) 28-47 164-189 PVNS1_IADA2 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 31-50 167-192 PVNS1_IADE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 28-47 164-189 PVNS1_IADU3 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 28-47 164-189 PVNS1_IAFOM NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 31-50 114-137 167-192 PVNS1_IAFOW NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50), AND 31-50 114-137 167-192 (STRAIN A/ PVNS1_IAFPR NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 31-50 167-192 ROSTOCK/34) PVNS1_IALE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 31-50 114-137 167-192 PVNS1_IALEN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 31-50 114-137 167-192 PVNS1_IAMA6 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/ 31-50 167-192 ALBERTA/88/76) PVNS1_IAMAN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/ 31-50 167-192 NEW YORK/6750/78) PVNS1_IAMAO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/ 31-50 167-192 NEW YORK/6874/78) PVNS1_IAMYN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MYNAH/ 28-47 164-189 HANEDA-THAI/76) PVNS1_IAPI0 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ 167-192 ALBERTA/119/79) PVNS1_IAPI1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ 31-50 167-192 ALBERTA/121/79) PVNS1_IAPI2 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ 31-50 167-192 ALBERTA/268/78) PVNS1_IAPI3 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ 31-50 167-192 ALBERTA/358/79) PVNS1_IAPUE NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 31-50 114-137 167-192 PVNS1_IATKB NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/ 31-50 167-192 BETHLEHEM-GLILIT/1492/B/ PVNS1_IATKC NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63) 31-50 167-192 PVNS1_IATKR NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71) 31-50 PVNS1_IATRS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61) 28-47 164-189 PVNS1_IATRT NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72) 31-50 167-192 PVNS1_IAUDO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 31-50 114-137 167-192 PVNS1_IAUSS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 31-50 114-137 167-192 PVNS1_IAZI1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 31-50 167-192 PVNS1_INCAA NONSTRUCTURAL PROTEIN NS1 INFLUENZA C VIRUS (STRAIN C/ANN ARBOR/1/50) 222-248 PVNS1_INCCA NONSTRUCTURAL PROTEIN NS1 INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 222-248 PVNS2_BTV10 NONSTRUCTURAL PROTEIN NS2 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 145-161 201-223 PVNS2_BTV17 NONSTRUCTURAL PROTEIN NS2 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 145-161 201-223 PVNS2_BTV1S NONSTRUCTURAL PROTEIN NS2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE 145-161 SOUTH AFRICA) PVNS2_BTV1X NONSTRUCTURAL PROTEIN NS2 BLUETONGUE VIRUS (SEROTYPE 10) 145-161 PVNS2_EHDV2 NONSTRUCTURAL PROTEIN NS2 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 145-161 2/STRAIN AL PVNS2_IAPUE NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)  3-28 PVNS2_IATRS NONSTRUCTURAL PROTEIN NS2 INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61) 56-80 PVNS2_PVM NONSTRUCTURAL PROTEIN 2 PNEUMONIA VIRUS OF MICE 52-68 PVNS3_CVPFS NONSTRUCTURAL PROTEIN 3-1 PORCINE TRANSMISSIBLE GASTROENTERITIS 177-201 CORONAVIRUS (STRAI PVNS3_CVPPU NONSTRUCTURAL PROTEIN 3-1 PORCINE TRANSMISSIBLE GASTROENTERITIS  98-122 CORONAVIRUS (STRAI PVNS3_CVPRM NONSTRUCTURAL PROTEIN 3-1 PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) 177-201 PVNS3_RSV NONSTRUCTURAL PROTEIN NS3 RICE STRIPE VIRUS 16-40 PVNS4_CVH22 NONSTRUCTURAL PROTEIN 4 HUMAN CORONAVIRUS (STRAIN 229E)  84-100 PVNS4_CVMS NONSTRUCTURAL PROTEIN 4 MURINE CORONAVIRUS MHV (STRAIN S) 17-38 PVNS4_CVPFS NONSTRUCTURAL PROTEIN 4 PORCINE TRANSMISSIBLE GASTROENTERITIS  4-31 CORONAVIRUS (STRAI PVNS4_CVPPU NONSTRUCTURAL PROTEIN 4 PORCINE TRANSMISSIBLE GASTROENTERITIS  4-31 CORONAVIRUS (STRAI PVNS4_CVPRM NONSTRUCTURAL PROTEIN 4 PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)  4-31 PVNS4_MSTV NONSTRUCTURAL PROTEIN NS4 MAIZE STRIPE VIRUS 41-56 PVNS4_RSV NONSTRUCTURAL PROTEIN NS4 RICE STRIPE VIRUS 41-56 60-82 152-167 PVNS7_CVFE3 NONSTRUCTURAL PROTEIN 7 FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683) 59-84 PVNS7_FIPV NONSTRUCTURAL PROTEIN 7 FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) 59-84 PVNSC_PI1HB NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA A VIRUS (STRAIN C35) 76-92 PVNSC_PI1HC NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA A VIRUS (STRAIN C39) 76-92 PVNSC_PI1HD NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA A VIRUS (STRAIN CI-5/73) 76-92 179-197 PVNSC_PI1HE NONSTRUCTURAL PROTEIN C HUMAN PARAINFLUENZA A VIRUS (STRAIN CI-14/83) 76-92 PVNST_CVBQ 32 KD NONSTRUCTURAL PROTEIN BOVINE CORONAVIRUS (STRAIN QUEBEC)  88-109 PVNST_INCGL NONSTRUCTURAL PROTEIN NS1-NS2 INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54) 222-248 PVNST_INCJH NONSTRUCTURAL PROTEIN NS1-NS2 INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66) 222-248 PVNST_INCMI NONSTRUCTURAL PROTEIN NS1-NS2 INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80) 222-248 PVNST_INCYA NONSTRUCTURAL PROTEIN NS1-NS2 INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81) 222-248 PVNST_PTPV NONSTRUCTURAL PROTEIN NS-S PUNTA TORO PHLEBOVIRUS 48-63 PVNST_SFSV NONSTRUCTURAL PROTEIN NS-S SANDFLY FEVER SICILIAN VIRUS 16-34 PVNST_UUK NONSTRUCTURAL PROTEIN NS-S UUKUNIEMI VIRUS 52-73  89-104 PVNUA_PRVKA PROBABLE NUCLEAR ANTIGEN PSEUDORABIES VIRUS (STRAIN KAPLAN) 756-777 1563- 1583 PVNUC_DHVI1 NUCLEOPROTEIN DHORI VIRUS (STRAIN INDIAN/1313/61) 123-139 297-324 PVNUC_EBOV NUCLEOPROTEIN EBOLA VIRUS 159-176 PVNUC_IAANA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANAS ACUTA/ 173-197 266-287 PRIMORJE/695/76) PVNUC_IAANN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 173-197 PVNUC_IABRA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78) 173-197 PVNUC_IABUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/ 173-197 HOKKAIDO/1/77) PVNUC_IACAL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78) 173-197 PVNUC_IACKG NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CHICKEN/ 173-197 GERMANY/N/49) PVNUC_IACKP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CHICKEN/ 173-197 PENNSYLVANIA/1/83) PVNUC_IADAU NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ 173-197 AUSTRALIA/749/80 PVNUC_IADBE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/BEIJING/1/78) 173-197 PVNUC_IADCZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ 173-197 CZECHOSLOVAKIA/56) PVNUC_IADE1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 173-197 PVNUC_IADE2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/62) 173-197 PVNUC_IADHK NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/HONG KONG/7/75) 173-197 PVNUC_IADM2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74) 173-197 PVNUC_IADMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53) 173-197 PVNUC_IADNZ NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/ 173-197 NEW ZEALAND/31/76) PVNUC_IADU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/2/60) 173-197 PVNUC_IAEN5 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55) 173-197 PVNUC_IAFOM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 173-197 PVNUC_IAFOW NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 173-197 PVNUC_IAFPD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 173-197 DOBSON/DUTC PVNUC_IAFPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ 173-197 ROSTOCK/34) PVNUC_IAGRE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GREY TEAL/ 173-197 AUSTRALIA/2/79) PVNUC_IAGU1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/5/77) 173-197 PVNUC_IAGU2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/ 173-197 704/77) PVNUC_IAGU3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/ 173-197 1824/78) PVNUC_IAGU4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/ 173-197 1815/79) PVNUC_IAGUA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/ 173-197 ASTRAKHAN/227/84) PVNUC_IAGUM NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/ 173-197 MASSACHUSETTS/26/80) PVNUC_IAGUN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/GULL/ 173-197 MINNESOTA/945/80) PVNUC_IAHIC NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HICKOX/40) 173-197 PVNUC_IAHJI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/JILLIN/1/89) 173-197 PVNUC_IAHLO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/ 173-197 1416/73) PVNUC_IAHMI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63) 173-197 PVNUC_IAHO1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG HONG/1/68) 173-197 PVNUC_IAHO2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83) 173-197 PVNUC_IAHPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56) 173-197 PVNUC_IAHTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86) 173-197 PVNUC_IAKIE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/KIEV/59/79) 173-197 PVNUC_IALEN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 173-197 PVNUC_IAMAA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MALLARD/ 173-197 ASTRAKHAN/244/82) PVNUC_IAMAN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MALLARD/ 173-197 NEW YORK/6750/78) PVNUC_IAMIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84) 173-197 PVNUC_IANT6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/NT/60/68) 173-197 PVNUC_IAOHI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/OHIO/4/83) 173-197 PVNUC_IAPAR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73) 173-197 PVNUC_IAPUE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 173-197 PVNUC_IARUD NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/ 173-197 NEW JERSEY/47/ PVNUC_IASE0 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SEAL/ 173-197 MASSACHUSETTS/1/80) PVNUC_IASH2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SHEARWATER/ 173-197 AUSTRALIA/72) PVNUC_IASIN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 173-197 PVNUC_IATEI NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEAL/ICELAND/29/80) 173-197 PVNUC_IATKN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/ 173-197 MINNESOTA/166/81) PVNUC_IATKO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TURKEY/ 173-197 ONTARIO/7732/66) PVNUC_IATRS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TERN/ 173-197 SOUTH AFRICA/61) PVNUC_IATRT NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TERN/ 173-197 TURKMENIA/18/72) PVNUC_IATX7 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77) 173-197 PVNUC_IAUDO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 173-197 PVNUC_IAUSS NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 173-197 PVNUC_IAVI6 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68) 173-197 PVNUC_IAWHN NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84) 173-197 PVNUC_IAWHP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WHALE/PACIFIC 173-197 OCEAN/19/76) PVNUC_IAWIL NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 173-197 PVNUC_IAZ29 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/29/37) 173-197 PVNUC_IAZ41 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/41/49) 173-197 PVNUC_IAZCA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/CAMBRIDGE/1/35) 173-197 PVNUC_IAZDA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/DANDONG/9/83) 173-197 PVNUC_IAZGE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/GERMANY/2/81) 173-197 PVNUC_IAZH1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/6/76) 173-197 PVNUC_IAZH3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/ 173-197 126/82) PVNUC_IAZI1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 173-197 PVNUC_IAZI2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31) 173-197 PVNUC_IAZI3 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46) 173-197 PVNUC_IAZI4 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89) 173-197 PVNUC_IAZJA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42) 173-197 PVNUC_IAZMA NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54) 173-197 PVNUC_IAZNE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/ 173-197 NETHERLANDS/12/85) PVNUC_IAZOH NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35) 173-197 PVNUC_IAZW1 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57) 173-197 PVNUC_IAZW2 NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/61) 173-197 PVNUC_INBAC NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 234-258 [COLD-ADAPTED]) PVNUC_INBAD NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 234-258 [WILD-TYPE]) PVNUC_INBLE NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/LEE/40) 234-258 PVNUC_INBSI NUCLEOPROTEIN INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79) 234-258 PVNUC_MABVM NUCLEOPROTEIN MARBURG VIRUS (STRAIN MUSOKE) 16-39 141-158 PVNUC_MABVP NUCLEOPROTEIN MARBURG VIRUS (STRAIN POPP) 16-39 141-158 PVO01_VACCC PROTEIN O1 VACCINIA VIRUS (STRAIN COPENHAGEN) 189-204 242-262 336-358 PVO01_VARV PROTEIN O1 VARIOLA VIRUS 189-204 242-262 336-358 PVOR1_FXMV 152 KD PROTEIN FOXTAIL MOSAIC VIRUS 846-865 PVOR1_NMV 186 KD PROTEIN NARCISSUS MOSAIC VIRUS 409-424  990- 1010 PVOR1_PVMR 223 KD PROTEIN POTATO VIRUS M (STRAIN RUSSIAN)  87-104  986- 1251- 1893- 1009 1270 1909 PVOR1_PVSP 223 KD PROTEIN POTATO VIRUS S (STRAIN PERUVIAN) 279-295 PVOR1_PVX 165 KD PROTEIN POTATO VIRUS X 128-153 234-256 306-322 1010- 1030 PVOR1_PVXCP 165 KD PROTEIN POTATO VIRUS X (STRAIN CP) 128-153 234-256 306-322 385-404 1010- 1030 PVOR1_PVXX3 165 KD PROTEIN POTATO VIRUS X (STRAIN X3) 128-153 234-256 306-322 1010- 1030 PVOR1_SMYEA 150 KD PROTEIN OS STRAWBERRY MILD YELLOW EDGE-ASSOCIATED 121-146 155-175 VIRUS PVOR1_WCMVM 147 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN M) 121-146 PVOR1_WCMVO 147 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN O) 121-146 408-430 PVP03_HSVSA PROBABLE MEMBRANE ANTIGEN 3 HERPESVIRUS SAIMIRI (STRAIN 11) 424-446 462-486 551-575 579-595 1051- 1072 PVP10_NPVAC P10 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR  4-26 42-59 POLYHEDROSIS VIRUS PVP10_NPVOP P10 PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID  4-31 POLYHEDROSIS VIRUS PVP10_NPVSE P10 PROTEIN SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS 35-58 VIRUS (STRAIN US) PVP10_RBSDV PROTEIN S10 RICE BLACK STREAKED DWARF VIRUS 31-49 52-77 105-129 195-214 260-283 504-528 PVP10_WTV NONSTRUCTURAL PROTEIN PNS10 WOUND TUMOR VIRUS (WTV)  90-107 265-291 PVP14_EBV PROBABLE MEMBRANE ANTIGEN P140 EPSTEIN-BARR VIRUS (STRAIN B95-8) 694-715 857-879 1124- 1145 PVP19_EBV PROD CAPSID ASSEMBLY AND DNA MATUR EPSTEIN-BARR VIRUS (STRAIN B95-8) 346-364 PROTEI PVP19_HCMVA PROD CAPSID ASSEMBLY AND DNA MATUR HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  77-101 122-149 200-216 PROTEI PVP19_HSVSA PROD CAPSID ASSEMBLY AND DNA MATUR HERPESVIRUS SAIMIRI (STRAIN 11) 238-265 PROTEI PVP19_VZVD CAPSID ASSEMBLY AND DNA MATUR VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)  5-31 PROTEIN PVP1_SSV1 STRUCTURAL PROTEIN VP1 PRECURSOR SULFOLOBUS VIRUS-LIKE PARTICLE SSV1  8-35 PVP21_AMCV CORE PROTEIN P21 ARTICHOKE MOTTLED CRINKLE VIRUS 37-63 PVP21_CNV CORE PROTEIN P21 CUCUMBER NECROSIS VIRUS 40-65 PVP21_CRV CORE PROTEIN P21 CYMBIDIUM RINGSPOT VIRUS 40-63 PVP21_TBSVC CORE PROTEIN P21 TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY) 40-63 PVP23_HCMVA PROBABLE CAPSID PROTEIN VP23 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 141-165 187-202 261-282 PVP23_HSVI1 CAPSID PROTEIN VP23 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 197-220 PVP23_HSV6U PROBABLE CAPSID PROTEIN VP23 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 206-232 PVP23_VZVD PROBABLE CAPSID PROTEIN VP23 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 117-132 PVP26_NPVAC P26 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 12-31 58-76 117-141 POLYHEDROSIS VIRUS PVP2_AHSV4 OUTER CAPSID PROTEIN VP2 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 868-891 974-994 4/STRAIN VACCINE) PVP2_BTV10 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 361-381 399-424 564-586 829-849 PVP2_BTV11 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 361-381 399-424 829-849 PVP2_BTV13 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 362-382 420-438 617-632 657-676 PVP2_BTV17 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 361-381 PVP2_BTV1A OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 420-438 654-681 PVP2_BTV1S OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE 14-31 113-140 420-438 654-681 SOUTH AFRICA) PVP2_EHDV1 OUTER CAPSID PROTEIN VP2 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS 153-168 229-252 (SEROTYPE 1) PVP2_ROTBR RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN RF) 301-317 334-360 522-543 673-698 764-789 PVP2_ROTBU RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN UK) 301-317 334-360 523-544 765-790 PVP2_ROTHW RNA-BINDINO PROTEIN VP2 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 309-325 342-363 532-553 674-700 774-799 PVP2_ROTPC RNA-BINDING PROTEIN VP2 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 51-75 303-319 408-425 514-535 665-691 PVP2_ROTS1 RNA-BINDING PROTEIN VP2 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 34-57 219-240 302-318 335-366 523-544 674-700 765-790 PVP30_MABVP MINOR NUCLEOPROTEIN VP30 MARBURG VIRUS (STRAIN MUSOKE) 50-75 PVP32_ASFB7 PHOSPHOPROTEIN P32 AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) 174-197 PVP35_EBOV POLYMERASE COMPLEX PROTEIN VP35 EBOLA VIRUS 233-256 PVP35_MABVM POLYMERASE COMPLEX PROTEIN VP35 MARBURG VIRUS (STRAIN MUSOKE) 49-75  78-104 PVP35_MABVP POLYMERASE COMPLEX PROTEIN VP35 MARBURG VIRUS (STRAIN POPP) 49-75  78-104 PVP35_VACCC IMMUNODOMINANT ENVELOPE VACCINIA VIRUS (STRAIN COPENHAGEN) 278-304 PROTEIN P35 PVP35_VACCV IMMUNODOMINANT ENVELOPE VACCINIA VIRUS (STRAIN WR) 278-304 PROTEIN P35 PVP35_VARV IMMUNODOMINANT ENVELOPE VARIOLA VIRUS 279-305 PROTEIN P35 PVP38_HSVMG 38 KD PHOSPHOPROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN GA) 255-270 PVP38_HSVMN 38 KD PHOSPHOPROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN MD11/75C/R2) 255-270 PVP39_NPVAC MAJOR CAPSID PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 296-311 POLYHEDROSIS VIRUS PVP39_NPVOP MAJOR CAPSID PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 107-134 214-240 295-316 POLYHEDROSIS VIRUS PVP3_AHSV4 VP3 CORE PROTEIN AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/ 65-85 126-147 215-230 845-862 STRAIN VACCINE) PVP3_BTV10 VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 123-144 212-227 PVP3_BTV17 VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 123-144 212-227 PVP3_BTV1A VP3 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 123-144 212-227 PVP3_EHDV1 VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) 121-142 671-695 PVP3_EHDVA VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 121-142 675-695 2/STRAIN AUS PVP3_RDV MAJOR 114 KD STRUCTURAL PROTEIN RICE DWARF VIRUS (RDV)  89-108 340-360 367-393 690-717 742-768 748-768 960-975 PVP3_ROTPC INNER CORE PROTEIN VP3 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 405-429 PVP3_ROTS1 INNER CORE PROTEIN VP3 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 401-425 426-444 512-536 796-822 PVP40_EBV CAPSID PROTEIN P40 EPSTEIN-BARR VIRUS (STRAIN B95-8) 429-454 PVP40_HSVI1 CAPSID PROTEIN P40 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 141-168 472-492 PVP40_HSVEB CAPSID PROTEIN P40 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 50-67  95-119 483-504 PVP40_HSVSA CAPSID PROTEIN P40 HERPESVIRUS SAIMIRI (STRAIN 11) 342-368 PVP40_ILTVT CAPSID PROTEIN P40 INFECTIOUS LARYNGOTRACHEITIS VIRUS 506-528 (STRAIN THORNE V882) PVP40_MABVM MATRIX PROTEIN VP40 MARBURG VIRUS (STRAIN MUSOKE)  95-110 PVP40_MABVP MATRIX PROTEIN VP40 MARBURG VIRUS (STRAIN POPP)  95-110 PVP40_NPVBM STRUCTURAL GLYCOPROTEIN P40 BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS 223-242 256-272 PVP40_VZVD CAPSID PROTEIN VP24 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 47-64 PVP41_NPVAC STRUCTURAL GLYCOPROTEIN GP41 AUTOGRAPHA CALIFORNICA NUCLEAR 229-248 262-278 POLYHEDROSIS VIRUS PVP41_ROTS1 OUTER CAPSID PROTEIN VP4 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 483-508 PVP42_ROTS1 OUTER CAPSID PROTEIN VP4 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 395-411 483-508 PVP47_NPVAC VIRAL TRANSCRIPTION REGULATOR P47 AUTOGRAPHA CALIFORNICA NUCLEAR 14-38 POLYHEDROSIS VIRUS PVP48_NPVOP P48 PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 136-157 POLYHEDROSIS VIRUS PVP4A_VARV MAJOR CORE PROTEIN P4A PRECURSOR VARIOLA VIRUS 273-288 PVP4B_VACCC MAJOR CORE PROTEIN P4B PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 331-358 PVP4B_VACCV MAJOR CORE PROTEIN P4B PRECURSOR VACCINIA VIRUS (STRAIN WR) 331-358 PVP4B_VARV MAJOR CORE PROTEIN P4B PRECURSOR VARIOLA VIRUS 331-358 PVP4_BTV10 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 174-193 233-249 545-561 PVP4_BTV11 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 174-193 233-249 535-551 PVP4_BTV13 VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 174-193 233-249 535-551 PVP4_BTV2A VP4 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 174-193 233-249 535-551 PVP4_NCDV OUTER CAPSID PROTEIN VP4 NEBRASKA CALF DIARRHEA VIRUS (STRAIN 483-508 NCDV-LINCOLN) PVP4_RDV NONSTRUCTURAL PROTEIN PNS4 RICE DWARF VIRUS 386-407 493-514 626-645 PVP4_ROTB4 OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641) 483-508 PVP4_ROTBC OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (STRAIN C486) 483-508 PVP4_ROTBU OUTER CAPSID PROTEIN VP4 BOVINE ROTAVIRUS (STRAIN UK) 483-508 PVP4_ROTEH OUTER CAPSID PROTEIN VP4 EQUINE ROTAVIRUS (STRAIN H-2) 226-250 483-508 PVP4_ROTH1 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076) 181-207 234-249 482-507 PVP4_ROTH5 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5) 181-207 234-249 482-507 PVP4_ROTH6 OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M) 483-508 PVP4_ROTHD OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 181-207 234-249 482-507 PVP4_ROTHJ OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN K8) 483-508 524-548 PVP4_ROTHK OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN KU) 76-91 181-207 234-249 482-507 PVP4_ROTHL OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (STRAIN L26) 181-207 234-249 482-507 PVP4_ROTHM OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37) 181-207 234-249 482-507 PVP4_ROTHN OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13) 181-208 235-250 483-508 PVP4_ROTHP OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P) 181-207 234-249 482-507 PVP4_ROTHT OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST THOMAS 3) 181-207 234-249 482-507 PVP4_ROTHV OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70) 181-207 482-507 PVP4_ROTHW OUTER CAPSID PROTEIN VP4 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 181-207 482-507 PVP4_ROTP5 OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 235-250 483-508 PVP4_ROTPC OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 487-512 PVP4_ROTPG OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 234-249 482-507 PVP4_ROTPY OUTER CAPSID PROTEIN VP4 PORCINE ROTAVIRUS (STRAIN YM) 235-250 483-508 PVP4_ROTRH OUTER CAPSID PROTEIN VP4 RHESUS ROTAVIRUS 483-508 PVP4_ROTSF OUTER CAPSID PROTEIN VP4 SIMIAN 11 ROTAVIRUS (STRAIN SA11-FEM) 483-508 PVP4_ROTSS OUTER CAPSID PROTEIN VP4 SIMIAN 11 ROTAVIRUS (STRAIN SA11-SEM) 395-411 483-508 PVP4_SBMV P4 PROTEIN SOUTHERN BEAN MOSAIC VIRUS  90-114 PVP4_WTV NONSTRUCTURAL PROTEIN PNS4 WOUND TUMOR VIRUS 192-215 416-438 498-519 564-591 PVP5_BTV10 OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 295-317 326-345 494-517 PVP5_BTV11 OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 295-317 326-345 494-517 PVP5_BTV13 OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 295-317 494-517 PVP5_BTV1A OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)  87-102 295-317 PVP5_BTV1S OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE 295-317 SOUTH AFRICA) PVP5_BTV2A OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 295-317 PVP5_RDV OUTER COAT PROTEIN P5 RICE DWARF VIRUS 265-284 622-639 690-715 PVP61_BTV10 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)  9-27 232-249 261-276 PVP61_NPVAC 61 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 321-337 438-462 POLYHEDROSIS VIRUS PVP62_BTV10 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)  5-23 257-272 PVP62_MRDV PROB NONSTRUCTURAL 36 3 KD PROTEIN MAIZE ROUGH DWARF VIRUS 130-146 PVP64_NPVOP MAJOR ENV GLYCOPROTEIN PREC ORGYIA PSEUDOTSUGATA MULTICAPSID 81-99 235-252 286-313 POLYHEDROSIS VIRUS PVP67_NPVAC MAJOR ENV GLYCOPROTEIN PREC AUTOGRAPHA CALIFORNICA NUCLEAR  84-102 238-255 POLYHEDROSIS VIRUS PVP67_NPVGM MAJOR ENVELOPE GLYCOPROTEIN GALLERIA MELLONELLA NUCLEAR 155-172 POLYHEDROSIS VIRUS PVP6_BTV11 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)  5-23 228-245 257-272 PVP6_BTV13 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)  5-23 228-245 257-272 PVP6_BTV17 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)  5-23 228-245 257-272 PVP6_BTV1S VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE  9-27 232-249 261-276 SOUTH AFRICA) PVP6_BTV2A VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 204-221 233-248 PVP6_WTV STRUCTURAL PROTEIN P6 WOUND TUMOR VIRUS 374-397 PVP6_WTVNJ STRUCTURAL PROTEIN P6 WOUND TUMOR VIRUS (STRAIN NJ) 374-397 PVP74_NPVAC P74 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 254-275 POLYHEDROSIS VIRUS PVP75_HSVSA PROBABLE MEMBRANE ANTIGEN 75 HERPESVIRUS SAIMIRI (STRAIN 11) 127-147 PVP79_NPVAC 79 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 274-301 405-420 678-704 POLYHEDROSIS VIRUS PVP7_BTV13 VP7 CORE PROTEIN BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 197-222 PVP7_EHDV1 VP7 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS 205-222 301-323 (SEROTYPE 1) PVP7_RDV NONSTRUCTURAL PROTEIN PNS7 RICE DWARF VIRUS 400-416 PVP7_WTV NONSTRUCTURAL PROTEIN PNS7 WOUND TUMOR VIRUS 262-285 PVP80_NPVAC CAPSID PROTEIN P80 AUTOGRAPHA CALIFORNICA NUCLEAR  98-123 638-660 POLYHEDROSIS VIRUS PVP87_NPVOP CAPSID PROTEIN P87 ORGYIA PSEUDOTSUGATA MULTICAPSID 571-593 POLYHEDROSIS VIRUS PVP8_BTV10 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 104-120 PVP8_BTV11 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 104-120 PVP8_BTV13 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 104-120 PVP8_BTV17 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 104-120 PVP8_BTV1A NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 104-120 PVP8_BTV1S NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE 104-120 SOUTH AFRICA) PVP8_BTV2A NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 104-120 PVP8_RDV OUTER CAPSID PROTEIN P8 ( RICE DWARF VIRUS 374-400 PVP8_RGDV OUTER CAPSID PROTEIN P8 RICE GALL DWARF VIRUS 177-202 216-242 398-425 PVP8_VACCC STRUCTURAL PROTEIN VP8 PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 225-242 PVP8_VACCV STRUCTURAL PROTEIN VP8 PRECURSOR VACCINIA VIRUS (STRAIN WR) 225-242 PVP8_VARV STRUCTURAL PROTEIN VP8 PRECURSOR VARIOLA VIRUS 225-242 PVP8_WTV OUTER CAPSID PROTEIN P8 WOUND TUMOR VIRUS 111-129 214-241 251-271 379-405 PVP9_RDV NONSTRUCTURAL PROTEIN PNS9 RICE DWARF VIRUS 51-72 PVP9_RGDV NONSTRUCTURAL PROTEIN S9 RICE GALL DWARF VIRUS 151-175 PVPHE_NPVAC 29 KD POLYHEDRAL ENVELOPE PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 145-166 225-245 POLYHEDROSIS VIRUS PVPHE_NPVOP 32 KD POLYHEDRAL ENVELOPE PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 122-144 POLYHEDROSIS VIRUS PVPRT_ADE12 ENDOPROTEASE HUMAN ADENOVIRUS TYPE 12 161-181 PVPRT_MMTVB PROTEASE MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6) 42-63 PVPRT_MPMV PROTEASE SIMIAN MASON-PFIZER VIRUS 80-99 PVPRT_SMRVH PROTEASE SQUIRREL MONKEY RETROVIRUS 256-271 PVPRT_SRV1 PROTEASE SIMIAN RETROVIRUS SRV-1 80-99 PVPU_HV1B1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-27 (BH10 ISOLATE HXB3) PVPU_HV1B8 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  4-27 (BH8 ISOLATE) PVPU_HV1BN VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-28 (BRAIN ISOLATE) PVPU_HV1BR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-27 (BRU ISOLATE) PVPU_HV1EL VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-26 (ELI ISOLATE) PVPU_HV1H2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  4-27 (HXB2 ISOLATE) PVPU_HV1JR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-28 (JRCSF ISOLATE) PVPU_HV1MA VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  2-27 (MAL ISOLATE) PVPU_HV1MN VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-20 (MN ISOLATE) PVPU_HV1ND VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-28 (NDK ISOLATE) PVPU_HV1PV VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-27 (PV22 ISOLATE) PVPU_HY1S1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-28 (SF162 ISOLATE) PVPU_HV1SC VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-28 (SC ISOLATE) PVPU_HV1Z2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1  3-28 (Z2/CDC-Z34 ISOLATE) PVPU_JSRV VPU PROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 24-25 (JAAGSIEKTE SHEEP RET PVPX_HV2BE VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE BEN) PVPX_HV2CA VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE CAM2) PVPX_HV2D1 VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE D194) PVPX_HV2D2 VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2  9-31 (ISOLATE D205, 7) PVPX_HV2G1 VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE GHANA-1) PVPX_HV2NZ VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE NIH-Z) PVPX_HV2RO VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE ROD) PVPX_HV2SB VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE SBLISY) PVPX_HV2ST VPX PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 10-32 (ISOLATE ST) PVPX_LDV VPX PROTEIN LACTATE DEHYDROGENASE-ELEVATING VIRUS 145-165 PVPX_SIVAI VPX PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/ 66-84 CLONE GRI-1) (S PVPX_SIVMI VPX PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 10-32 (MM142-83 ISOLATE) (SIV-MAC) PVPX_SIVMK VPX PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 10-32 (K6W ISOLATE) (SIV-MAC) PVPX_SIVML VPX PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 10-32 (K78 ISOLATE) (SIV-MAC) PVPX_SIVS4 VPX PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 10-32 (F236/SMH4 ISOLATE) (SOOTY M PVPX_SIVSP VPX PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS 10-32 (PBJ/BC13 ISOLATE) (SOOTY MA PVRNA_BSMV ALPHA-A PROTEIN BARLEY STRIPE MOSAIC VIRUS (BSMV) 290-312 904-929 PVS05_ROTBR NONSTRUCTURAL PROTEIN NCVP2 BOVINE ROTAVIRUS (STRAIN RF) 140-157 461-487 PYS05_ROTHI NONSTRUCTURAL PROTEIN NCVP2 HUMAN ROTAVIRUS (STRAIN IGV-80-3) 140-157 428-450 457-473 PVS05_ROTPC NONSTRUCTURAL PROTEIN NS53 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)  88-112 PVS05_ROTS1 NONSTRUCTURAL PROTEIN NCVP2 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 399-414 PVS06_ROTBR VP6 PROTEIN BOVINE ROTAVIRUS (STRAIN RE) 202-225 PVS06_ROTBS VP6 PROTEIN BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 64-85 PVS06_ROTBU VP6 PROTEIN BOVINE ROTAVIRUS (STRAIN UK) 202-225 PVS06_ROTEF VP6 PROTEIN EQUINE ROTAVIRUS (STRAIN FI-14) 202-225 PVS06_ROTEH VP6 PROTEIN EQUINE ROTAVIRUS (STRAIN H-2) 202-225 PVS06_ROTGA VP6 PROTEIN ROTAVIRUS (GROUP B/STRAIN ADRV) (ADULT 22-40 DIARRHEA ROTAVIRU PVS06_ROTGI VP6 PROTEIN ROTAVIRUS (GROUP B/STRAIN IDIR) 22-40 PVS06_ROTHI VP6 PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076) 202-225 PVS06_ROTHC VP6 PROTEIN HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL) 64-85 PVS06_ROTHS VP6 PROTEIN HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2) 202-225 PVS06_ROTHW VP6 PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 202-225 PVS06_ROTPC VP6 PROTEIN PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 64-85 314-340 PVS06_ROTPG VP6 PROTEIN PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 202-225 PVS07_ROTBJ GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN KN-4) 131-155 PVS08_ROTPC GLYCOPROTEIN VP7 PRECURSOR PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 117-136 PYS08_ROTS1 NONSTRUCTURAL PROTEIN NCVP4 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 274-295 PVS09_ROTB6 GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN 61A) 131-155 PVS09_ROTBA GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN A44) 131-155 PVS09_ROTBB GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 10/STRAIN B223) 131-155 PVS09_ROTBK GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (STRAIN KK3) 131-155 PVS09_ROTBT GLYCOPROTEIN VP7 BOVINE ROTAVIRUS (SEROTYPE 1/STRAIN T449) 131-155 PVS09_ROTC7 GLYCOPROTEIN VP7 CHICKEN ROTAVIRUS A (SEROTYPE 7/STRAIN CH2) 134-158 PVS09_ROTEL GLYCOPROTEIN VP7 EQUINE ROTAVIRUS (STRAIN L338) 131-155 PVS09_ROTGI GLYCOPROTEIN VP7 PRECURSOR ROTAVIRUS (GROUP B/STRAIN IDIR) 205-232 PVS09_ROTH4 GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4) 131-155 197-212 PVS09_ROTHA GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5) 197-212 PVS09_ROTHD GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1) 197-212 PVS09_ROTHH GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126) 197-212 PVS09_ROTHL GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (STRAIN L26) 131-155 197-212 PVS09_ROTHM GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37) 131-155 197-212 PVS09_ROTHO GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO AND 131-155 197-212 STRAIN D) PVS09_ROTHP GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P) 131-155 PVS09_ROTHR GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV) 131-155 PVS09_ROTHS GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2) 197-212 PVS09_ROTHV GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70) 197-212 PVS09_ROTHW GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 131-155 197-212 PVS09_ROTP5 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU) 131-155 197-212 PVS09_ROTP6 GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN TFR-41) 131-155 PVS09_ROTPB GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BEN-144) 197-212 PVS09_ROTPM GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BMI-1) 197-212 PVS09_ROTRH GLYCOPROTEIN VP7 RHESUS ROTAVIRUS 131-155 PVS09_ROTS1 GLYCOPROTEIN VP7 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 131-155 PVS11_ROTGA NONSTRUCTURAL PROTEIN ROTAVIRUS (GROUP B/STRAIN ADRV) 136-153 (ADULT DIARRHEA ROTAVIRU PVSH_HRSVA SMALL HYDROPHOBIC PROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 16-41 PVSH_MUMP1 SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN SBL-1), AND  7-29 MUMPS VIRUS (STRAIN SBL) PVSH_MUMP2 SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN EDINGBURGH 2 &6)  7-29 PVSH_MUMP4 SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN EDINGBURGH 4)  7-29 PVSH_MUMPA SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN MATSUYAMA) 10-29 PVSH_MUMPB SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN BELFAST)  7-29 PVSH_MUMPE SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN ENDERS)  7-29 PVSH_MUMPJ SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN JERYL-LYNN)  7-29 PVSH_MUMPK SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN KILHAM)  7-29 PVSH_MUMPL SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN BRISTOL 1)  6-29 PVSH_MUMPM SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 10-29 PVSH_MUMPR SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN RW)  7-29 PVSH_MUMPT SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN TAKAHASHI) 10-29 PVSH_MUMPU SMALL HYDROPHOBIC PROTEIN MUMPS VIRUS (STRAIN URABE VACCINE AM9) 10-29 PVS11_REOVL SIGMA 1 PROTEIN PRECUSOR REOVIRUS (TYPE 1/STRAIN LANG) 110-136 PVS13_REOVD SIGMA 3 PROTEIN REOVIRUS (TYPE 3/STRAIN DEARING) 152-170 PVS13_REOVJ SIGMA 3 PROTEIN REOVIRUS (TYPE 2/STRAIN D5/JONES) 152-170 PVS13_REOVL SIGMA 3 PROTEIN REOVIRUS (TYPE 1/STRAIN LANG) 152-170 PVSIS_REOVL SIGMA 1-S PROTEIN REOVIRUS (TYPE 1/STRAIN LANG)  79-101 PVST2_HEVBU STRUCTURAL PROTEIN 2 PRECUSOR HEPATITIS E VIRUS (STRAIN BURMA) 292-311 PVST2_HEVME STRUCTURAL PROTEIN 2 PRECUSOR HEPATITIS E VIRUS (STRAIN MEXICO) 292-311 PVST2_HEVMY STRUCTURAL PROTEIN 2 PRECUSOR HEPATITIS E VIRUS (STRAIN MYANMAR) 292-311 PVST2_HEPVA STRUCTURAL PROTEIN 2 PRECUSOR HEPATITIS E VIRUS (STRAIN PAKISTAN) 292-311 PVST2_HEVRH STRUCTURAL PROTEIN 2 HEPATITIS E VIRUS (STRAIN RHESUS) 160-179 PVT2_MYXVL TUMOR NECROSIS FACTOR SOL MYXOMA VIRUS (STRAIN LAUSANNE) 261-283 RECEPTOR PREC PVT2_SFVKA TUMOR NECROSIS FACTOR SOL SHOPE FIBROMA VIRUS (STRAIN KASZA) 270-289 RECEPTOR PREC PVT3A_CAPVI PROTEIN T3A CAPRIPOXVIRUS (STRAIN INS-1) 116-138 PVT4_SFVKA T4 PROTEIN SHOPE FIBROMA VIRUS (STRAIN KASZA) 125-148 PVTER_EBV PROBABLE DNA PACKAGING PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 117-139 166-192 227-250 PVTER_HCMVA PROBABLE DNA PACKAGING PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 409-430 PVTER_HSVI1 PROBABLE DNA PACKAGING PROTEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 363-380 673-688 PVTER_HSV6U PROBABLE DNA PACKAGING PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN 260-278 UGANDA-1102) PVTER_HSVEB PROBABLE DNA PACKAGING PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) 364-381 PVTER_HSVI1 PROBABLE DNA PACKAGING PROTEIN ICTALURID HERPESVIRUS 1 309-333 756-781 PVTER_HSVSA PROBABLE DNA PACKAGING PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 218-214 PVTER_VZVD PROBABLE DNA PACKAGING PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) 372-389 PX_HPBGS PROTEIN X GROUND SQUIRREL HEPATITIS VIRUS 68-85 PX_WHV1 PROTEIN X WOODCHUCK HEPATITIS VIRUS 1 68-85 PX_WHV59 PROTEIN X WOODCHUCK HEPATITIS VIRUS 59 68-85 PX_WHV7 PROTEIN X WOODCHUCK HEPATITIS VIRUS 7 68-85 PX_WHV8 PROTEIN X WOODCHUCK HEPATITIS VIRUS 8 68-85 PX_WHV8I PROTEIN X WOODCHUCK HEPATITIS VIRUS 8 68-85 (INFECTIOUS CLONE) PX_WHVW6 PROTEIN X WOODCHUCK HEPATITIS VIRUS W64 68-85 (ISOLATE PWS23) PY104_ADE07 HYPOTHETICAl 10 4 KD EARLY PROTEIN HUMAN ADENOVIRUS TYPE 7 55-73 PY108_SSV1 HYPOTHETICAL 10 8 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 66-90 PY10K_MSVS HYPOTHETICAL 10 9 KD PROTEIN MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE) 24-47 PY118_SSV1 HYPOTHETICAL 11 8 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 42-59 PY11K_PASV HYPOTHETICAL 11 9 KD PROTEIN PANICUM STREAK VIRUS 29-52 PY12K_BNYVG RNA-3 HYPOTHETICAL 11 6 KD PROTEIN BEET NECROTIC YELLOW VEIN MOSAIC VIRUS 15-42 (ISOLATE G1) PY12K_CMVSI HYPOTHETICAL 12 4 KD PROTEIN CYMBIDIUM MOSAIC VIRUS (STRAIN SINGAPORE)  8-30 PY137_ADE02 HYPOTHETICAL PROTEIN B-137 HUMAN ADENOVIRUS TYPE 2 28-50 PY13K_CLVK HYPOTHETICAL 13 1 KD PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844) 34-55 PY13K_CLVN HYPOTHETICAL 13 1 KD PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN) 34-55 PY13K_TYLCM HYPOTHETICAL 13 3 KD PROTEIN TOMATO YELLOW LEAF CURL VIRUS (STRAIN 10-27 MARMANDE) PY13K_TYLCV HYPOTHETICAL 13 4 KD PROTEIN TOMATO YELLOW LEAF CURL VIRUS 34-55 PY145_ADE07 HYPOTHETICAL 14 5 KD EARLY PROTEIN HUMAN ADENOVIRUS TYPE 7 108-132 PY14K_CSMV HYPOTHETICAL 14 5 KD PROTEIN CHLORIS STRIATE MOSAIC VIRUS 54-80 PY18K_SSV1 HYPOTHETICAL 18 0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 100-125 141-162 PY206_ADE07 HYPOTHETICAL 20 6 KD EARLY PROTEIN HUMAN ADENOVIRUS TYPE 7 50-73 PY25K_BNYVF RNA-3 HYPOTHETICAL 24 7 KD PROTEIN BEET NECROTIC YELLOW VEIN MOSAIC VIRUS 163-188 (ISOLATE F2) PY29K_NPVAC HYPOTHETICAL 29 9 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR  90-106 POLYHEDROSIS VIRUS PY2_SOCMV HYPOTHETICAL PROTEIN 2 SOYBEAN CHLOROTIC MOTTLE VIRUS 65-90 PY32K_SSV1 HYPOTHETICAL 31 7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 122-142 PY6K0_SSV1 HYPOTHETICAL 6 0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 23-44 PY7K4_VACCV HYPOTHETICAL 7 4 KD PROTEIN VACCINIA VIRUS (STRAIN WR) 21-36 PY7K_MEASH HYPOTHETICAL 7 KD PROTEIN MEASLES VIRUS (STRAIN HALLE)  3-25 PY7_SOCMV HYPOTHETICAL PROTEIN 7 SOYBEAN CHLOROTIC MOTTLE VIRUS  96-120 PY85K_SSV1 HYPOTHETICAL 85 7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1  80-105 155-173 543-565 657-675 764-784 PY8_SOCMV HYPOTHETICAL PROTEIN 8 SOYBEAN CHLOROTIC MOTTLE VIRUS 10-27 PY97_ADE07 HYPOTHETICAL 9 7 KD EARLY PROTEIN HUMAN ADENOVIRUS TYPE 7 54-77 PY9K2_SSV1 HYPOTHETICAL 9 2 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 16-41 62-77 PYAL1_EBV HYPOTHETICAL BALF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 205-220 PYB01_FOWPM HYPOTHETICAL BAMHI-ORF1 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 354-374 PYB07_FOWPM HYPOTHETICAL BAMHI-ORF7 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 104-121 PYB09_FOWPM HYPOTHETICAL BAMHI-ORF9 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 49-67 PYB10_FOWPM HYPOTHETICAL BAMHI-ORF10 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])  84-100 PYB12_FOWPM HYPOTHETICAL BAMHI-ORF12 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 114-134 154-169 PYBL2_SFV3L BEL-2 PROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 113-128 PYBL3_FOAMV BEL-3 PROTEIN HUMAN SPUMARETROVIRUS 52-78 PYDH1_HSVSC HYP 28 7 KD PROTEIN IN DHFR 3′REGION HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 206-230 PYDH3_HSVSC HYP 9 5 KD PROTEIN IN DHFR 3′REGION HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 69-90 PYEC4_EBV HYPOTHETICAL EC-RF4 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 200-222 PYGA1_HSVMB HYPOTHETICAL 23 6 KD PROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1) 175-190 PYGA1_HSVMM HYPOTHETICAL 23 6 KD PROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN MD5) 175-190 PYHL4_HCMVA HYPOTHETICAL PROTEIN HHLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 101-121 PYHR3_VACCV HYP HOST RANGE 27 4 KD PROTEIN VACCINIA VIRUS (STRAIN WR)  86-102 PYIO2_CVMA5 HYP PROTEIN IN NUCLEOCAPSID ORF MURINE CORONAVIRUS MHV 141-156 PYIOR_CVM1 HYP PROTEIN IN NUCLEOCAPSID ORF MURINE CORONAVIRUS MHV 141-156 PYIOR_CVMS HYP PROTEIN IN NUCLEOCAPSID ORF MURINE CORONAVIRUS MHV  7-33 PYKR2_EBV HYPOTHETICAL BKRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 67-90 PYL12_ADE41 HYPOTHETICAL 8 0 KD PROTEIN HUMAN ADENOVIRUS TYPE 41 53-73 PYMR2_EBV BMRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)  76-100 128-155 215-241 330-350 PYMSP_IRV22 HYPOTHETICAL 15 9 KD PROTEIN SIMULIUM IRIDESCENT VIRUS (INSECT IRIDESCENT 23-46 VIRUS TYPE 22) PYOR1_ADEG1 HYPOTHETICAL PROTEIN AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS) 59-80 (FOWL ADENOVIRUS 1) PYOR1_COYMV HYPOTHETICAL 23 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS 56-83 PYOR1_TTV1 HYPOTHETICAL 7 9 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 13-40 PYOR2_COYMV HYPOTHETICAL 15 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS 23-49 PYOR2_EAV HYPOTHETICAL 25 6 KD PROTEIN EQUINE ARTERITIS VIRUS 165-192 PYOR2_LELV HYPOTHETICAL 28 4 KD PROTEIN LELYSTAD VIRUS 196-212 PYOR3_LVX HYPOTHETICAL 11 8 KD PROTEIN LILY VIRUS X 71-92 PYOR3_NMV HYPOTHETICAL 14 KD PROTEIN NARCISSUS MOSAIC VIRUS  7-30 PYOR3_PVX HYPOTHETICAL 12 KD PROTEIN POTATO VIRUS X 11-34 PYOR3_PVXCP HYPOTHETICAL 12 KD PROTEIN POTATO VIRUS X (STRAIN CP) 11-34 PYOR3_WCMVM HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN M)  9-29 PYOR3_WCMVO HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN O)  9-31 PYOR5_ADEG1 HYPOTHETICAL 31 5 KD PROTEIN AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS) 69-86 (FOWL ADENOVIRUS 1) PYOR5_EAV HYPOTHETICAL 28 7 KD PROTEIN EQUINE ARTERITIS VIRUS 139-158 PYOR6_NMV HYPOTHETICAL 10 KD PROTEIN NARCISSUS MOSAIC VIRUS 10-26 PYORI_TTV1 HYPOTHETICAL 16 6 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 13-32 PYORL_TTV1 HYPOTHETICAL 16 5 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 16-39 PYORM_TTV1 HYPOTHETICAL 38 6 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)  82-102 233-256 PYORP_TTV1 HYPOTHETICAL 20 2 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)  91-115 PYP24_RTBV HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS  2-25 104-126 PYP24_RTBVP HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS  2-25 104-126 (ISOLATE PHILIPPINES) PYP47_NPVAC HYPOTHETICAL 43 5 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR 211-234 POLYHEDROSIS VIRUS PYP62_NPVOP HYPOTHETICAL 12 2 KD PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID  82-108 POLYHEDROSIS VIRUS (OP PYP63_NPVOP HYPOTHETICAL 40 0 KD PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 27-54 215-230 POLYHEDROSIS VIRUS (OP PYP7B_TNVD HYPOTHETICAL P7B PROTEIN TOBACCO NECROSIS VIRUS (STRAIN D) (TNV) 13-31 PYPO4_NPVLD HYPOTHETICAL 8 5 KD PROTEIN LYMANTRIA DISPAR MULTICAPSID NUCLEAR 16-35 POLYHEDROSIS VIRUS PYRF1_HSV6G HYPOTHETICAL PROTEIN RF1 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 42-66 PYRF2_HSV6G HYPOTHETICAL PROTEIN RF2 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 55-74 PYRF3_HSV6G HYPOTHETICAL PROTEIN RF3 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 32-56 PYRP1_IRV6 REPETITIVE PROTEIN ORF1 CHILO IRIDESCENT VIRUS (CIV) (INSECT 20-43 IRIDESCENT VIRUS TYPE 6) PYRP4_IRV6 REPETITIVE PROTEIN ORF4 CHILO IRIDESCENT VIRUS (CIV) (INSECT 44-69 IRIDESCENT VIRUS TYPE 6) PYRP5_IRV6 REPETITIVE PROTEIN ORF5 CHILO IRIDESCENT VIRUS (CIV) (INSECT  98-123 179-204 260-285 IRIDESCENT VIRUS TYPE 6) PYRR1_EBV HYPOTHETICAL BRRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 199-223 PYRR2_EBV HYPOTHETICAL BRRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 164-182 PYSR1_EBV HYPOTHETICAL BSRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)  92-113 PYTR1_EBV HYPOTHETICAL BTRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 383-401 PYUB2_NPVOP HYPOTHETICAL 24 0 KD PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 133-152 POLYHEDROSIS VIRUS (OP PYVAE_VACCC HYPOTHETICAL 18 2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 82-99 140-156 PYVAF_VACCC HYPOTHETICAL 8 4 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 17-40 51-68 PYVAL_VACCV HYPOTHETICAL 9 9 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND 21-43 VACCINIA VIRUS (STRAIN COPE PYVAT_VACCV HYPOTHETICAL 8 9 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND 28-46 VACCINIA VIRUS (STRAIN COPE PYVBE_VACCV HYPOTHETICAL 10 5 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND  9-28 VACCINIA VIRUS (STRAIN COPE PYVBG_VACCC HYPOTHETICAL 11 2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 37-54 PYVCA_VACCC HYPOTHETICAL 8 0 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 18-35 PYVD2_VACCV HYPOTHETICAL 8 6 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND  5-26 36-52 VACCINIA VIRUS (STRAIN COPE PYVDA_VACCC HYPOTHETICAL 9 2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 22-38 44-64 PYVDA_VACCV HYPOTHETICAL 9 2 KD PROTEIN VACCINIA VIRUS (STRAIN WR)  3-28 22-38 44-64 PYVFA_VACCC HYPOTHETICAL 7 1 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 48-67 PYVFF_VACCC HYPOTHETICAL 8 8 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 23-42 PYVGA_VACCC HYPOTHETICAL 14 3 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 105-127 PYVKB_VACCC HYPOTHETICAL 9 0 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 54-70 PYZL2_EBV HYPOTHETICAL BZLF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 150-166 PY14K_CSMV HYPOTHETICAL 14 5 KD PROTEIN CHLORIS STRIATE MOSAIC VIRUS 54-80 PY18K_SSV1 HYPOTHETICAL 18 0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 100-125 141-162 PY206_ADE07 HYPOTHETICAL 20 6 KD EARLY PROTEIN HUMAN ADENOVIRUS TYPE 7 50-73 PY25K_BNYVF RNA-3 HYPOTHETICAL 24 7 KD PROTEIN BEET NECROTIC YELLOW VEIN MOSAIC VIRUS 163-188 (ISOLATE F2) PY29K_NPVAC HYPOTHETICAL 29 9 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR  90-106 POLYHEDROSIS VIRUS PY2_SOCMV HYPOTHETICAL PROTEIN 2 SOYBEAN CHLOROTIC MOTTLE VIRUS 65-90 PY32K_SSV1 HYPOTHETICAL 31 7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 122-142 PY6K0_SSV1 HYPOTHETICAL 6 0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 23-44 PY7K4_VACCV HYPOTHETICAL 7 4 KD PROTEIN VACCINIA VIRUS (STRAIN WR) 21-36 PY7K_MEASH HYPOTHETICAL 7 KD PROTEIN MEASLES VIRUS (STRAIN HALLE)  3-25 PY7_SOCMV HYPOTHETICAL PROTEIN 7 SOYBEAN CHLOROTIC MOTTLE VIRUS  96-120 PY85K_SSV1 HYPOTHETICAL 85 7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1  80-105 155-173 543-565 657-675 764-784 PY8_SOCMV HYPOTHETICAL PROTEIN 8 SOYBEAN CHLOROTIC MOTTLE VIRUS 10-27 PY97_ADE07 HYPOTHETICAL 9 7 KD EARLY PROTEIN HUMAN ADENOVIRUS TYPE 7 54-77 PY9K2_SSV1 HYPOTHETICAL 9 2 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 16-41 62-77 PYAL1_EBV HYPOTHETICAL BALF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 205-220 PYB01_FOWPM HYPOTHETICAL BAMHI-ORF1 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 354-374 PYB07_FOWPM HYPOTHETICAL BAMHI-ORF7 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 104-121 PYB09_FOWPM HYPOTHETICAL BAMHI-ORF9 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 49-67 PYB10_FOWPM HYPOTHETICAL BAMHI-ORF10 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])  84-100 PYB12_FOWPM HYPOTHETICAL BAMHI-ORF12 PROTEIN FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 114-134 154-169 PYBL2_SFV3L BEL-2 PROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) 113-128 PYBL3_FOAMV BEL-3 PROTEIN HUMAN SPUMARETROVIRUS 52-78 PYDH1_HSVSC HYPOTHETICAL 28 7 KD PROTEIN IN DHFR HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 206-230 3′REGIO PYDH3_HSVSC HYPOTHETICAL 9 5 KD PROTEIN IN DHFR HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 69-90 3′REGION PYEC4_EBV HYPOTHETICAL EC-RF4 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 200-222 PYGA1_HSVMB HYPOTHETICAL 23 6 KD PROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1) 175-190 PYGA1_HSVMM HYPOTHETICAL 23 6 KD PROTEIN MAREK'S DISEASE HERPESVIRUS (STRAIN MD5) 175-190 PYHL4_HCMVA HYPOTHETICAL PROTEIN HHLF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 101-121 PYHR3_VACCV HYPOTHETICAL HOST RANGE 27 4 KD VACCINIA VIRUS (STRAIN WR)  86-102 PROTEIN PYIO2_CVMA5 HYPOTHETICAL PROTEIN IN MURINE CORONAVIRUS MHV 141-156 NUCLEOCAPSID ORF PYIOR_CVM1 HYPOTHETICAL PROTEIN IN MURINE CORONAVIRUS MHV 141-156 NUCLEOCAPSID ORF PYIOR_CVMS HYPOTHETICAL PROTEIN IN MURINE CORONAVIRUS MHV  7-33 NUCLEOCAPSID ORF PYKR2_EBV HYPOTHETICAL BKRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 67-90 PYL12_ADE41 HYPOTHETICAL 8 0 KD PROTEIN HUMAN ADENOVIRUS TYPE 41 53-73 PYMR2_EBV BMRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)  76-100 128-155 215-241 330-350 PYMSP_IRV22 HYPOTHETICAL 15 9 KD PROTEIN SIMULIUM IRIDESCENT VIRUS (INSECT 23-46 IRIDESCENT VIRUS TYPE 22) PYOR1_ADEG1 HYPOTHETICAL PROTEIN AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS) 59-80 (FOWL ADENOVIRUS 1) PYOR1_COYMV HYPOTHETICAL 23 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS 56-83 PYOR1_TTV1 HYPOTHETICAL 7 9 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 13-40 PYOR2_COYMV HYPOTHETICAL 15 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS 23-49 PYOR2_EAV HYPOTHETICAL 25 6 KD PROTEIN EQUINE ARTERITIS VIRUS 165-192 PYOR2_LELV HYPOTHETICAL 28 4 KD PROTEIN LELYSTAD VIRUS 196-212 PYOR3_LVX HYPOTHETICAL 11 8 KD PROTEIN LILY VIRUS X 71-92 PYOR3_NMV HYPOTHETICAL 14 KD PROTEIN NARCISSUS MOSAIC VIRUS  7-30 PYOR3_PVX HYPOTHETICAL 12 KD PROTEIN POTATO VIRUS X 11-34 PYOR3_PVXCP HYPOTHETICAL 12 KD PROTEIN POTATO VIRUS X (STRAIN CP) 11-34 PYOR3_WCMVM HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN M)  9-29 PYOR3_WCMVO HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN O)  9-31 PYOR5_ADEG1 HYPOTHETICAL 31 5 KD PROTEIN AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS) 69-86 (FOWL ADENOVIRUS 1) PYOR5_EAV HYPOTHETICAL 28 7 KD PROTEIN EQUINE ARTERITIS VIRUS 139-158 PYOR6_NMV HYPOTHETICAL 10 KD PROTEIN NARCISSUS MOSAIC VIRUS 10-26 PYORI_TTV1 HYPOTHETICAL 16 6 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 13-32 PYORL_TTV1 HYPOTHETICAL 16 5 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) 16-39 PYORM_TTV1 HYPOTHETICAL 38 6 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)  82-102 233-256 PYORP_TTV1 HYPOTHETICAL 20 2 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)  91-115 PYP24_RTBV HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS  2-25 104-126 PYP24_RTBVP HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE  2-25 104-126 PHILIPPINES) PYP47_NPVAC HYPOTHETICAL 43 5 KD PROTEIN IN AUTOGRAPHA CALIFORNICA NUCLEAR 211-234 P47 3′REGION POLYHEDROSIS VIRUS PYP62_NPVOP HYPOTHETICAL 12 2 KD PROTEIN IN ORGYIA PSEUDOTSUGATA MULTICAPSID  82-108 P6 5 5′REGION POLYHEDROSIS VIRUS (OP PYP63_NPVOP HYPOTHETICAL 40 0 KD PROTEIN IN ORGYIA PSEUDOTSUGATA MULTICAPSID 27-54 215-230 P6 5 5′REGION POLYHEDROSIS VIRUS (OP PYP7B_TNVD HYPOTHETICAL P78 PROTEIN TOBACCO NECROSIS VIRUS (STRAIN D) (TNV) 13-31 PYPO4_NPVLD HYPOTHETICAL 8 5 KD PROTEIN IN LYMANTRIA DISPAR MULTICAPSID NUCLEAR 16-35 POL 3′REGION POLYHEDROSIS VIRUS PYRF1_HSV6G HYPOTHETICAL PROTEIN RF1 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 42-66 PYRF2_HSV6G HYPOTHETICAL PROTEIN RF2 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 55-74 PYRF3_HSV6G HYPOTHETICAL PROTEIN RF3 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 32-56 PYRP1_IRV6 REPETITIVE PROTEIN ORF1 CHILO IRIDESCENT VIRUS (CIV) (INSECT 20-43 IRIDESCENT VIRUS TYPE 6) PYRP4_IRV6 REPETITIVE PROTEIN ORF4 CHILO IRIDESCENT VIRUS (CIV) (INSECT 44-69 IRIDESCENT VIRUS TYPE 6) PYRP5_IRV6 REPETITIVE PROTEIN ORF5 CHILO IRIDESCENT VIRUS (CIV) (INSECT  91-123 179-204 260-285 IRIDESCENT VIRUS TYPE 6) PYRR1_EBV HYPOTHETICAL BRRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 199-223 PYRR2_EBV HYPOTHETICAL BRRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 164-182 PYSR1_EBV HYPOTHETICAL BSRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8)  92-113 PYTR1_EBV HYPOTHETICAL BTRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 383-401 PYUB2_NPVOP HYPOTHETICAL 24 0 KD PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID 133-152 POLYHEDROSIS VIRUS (OP PYVAE_VACCC HYPOTHETICAL 18 2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 82-99 140-156 PYVAF_VACCC HYPOTHETICAL 8 4 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 17-40 51-68 PYVAL_VACCV HYPOTHETICAL 9 9 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND 21-43 VACCINIA VIRUS (STRAIN COPE PYVAT_VACCV HYPOTHETICAL 8 9 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND 28-46 VACCINIA VIRUS (STRAIN COPE PYVBE_VACCV HYPOTHETICAL 10 5 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND  9-28 VACCINIA VIRUS (STRAIN COPE PYVBG_VACCC HYPOTHETICAL 11 2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 37-54 PYVCA_VACCC HYPOTHETICAL 8 0 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 18-35 PYVD2_VACCV HYPOTHETICAL 8 6 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND  5-26 36-52 VACCINIA VIRUS (STRAIN COPE PYVDA_VACCC HYPOTHETICAL 9 2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 22-38 44-64 PYVDA_VACCV HYPOTHETICAL 9 2 KD PROTEIN VACCINIA VIRUS (STRAIN WR)  3-18 22-38 44-64 PYVFA_VACCC HYPOTHETICAL 7 1 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 48-67 PYVFF_VACCC HYPOTHETICAL 8 8 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 23-42 PYVGA_VACCC HYPOTHETICAL 14 3 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 105-127 PYVKB_VACCC HYPOTHETICAL 9 0 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 54-70 PYZL2_EBV HYPOTHETICAL BZLF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) 150-166

TABLE XIV SEARCH RESULTS SUMMARY FOR P23TLZIPC MOTIF PCGENE P23CTLZIP All Viruses (no bacteriophages) AREA AREA AREA AREA AREA FILE NAME PROTEIN VIRUS AREA 1 AREA 2 3 4 5 6 7 PPOL2_TBRVS RNA2 POLYPROTEIN TOMATO BLACK RING VIRUS (STRAIN S) (TBRV) 617-651 1041-1077 PPOL2_TRSVR RNA2 POLYPROTEIN TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY) (TOMRSV) 316-347 PPOLG_BOVEV GENOME POLYPROTEIN BOVINE ENTEROVIRUS (STRAIN VG-5-27) (BEV) 1833-1866 2001-2037 PPOLG_BVDVN GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL) 102-135 1650-1678 3220- 3248 PPOLG_BVDVS GENOME POLYPROTEIN BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1) 102-135 1560-1588 3130- 3158 PPOLG_BYMV GENOME POLYPROTEIN BEAN YELLOW MOSAIC VIRUS 226-255 PPOLG_COXA2 GENOME POLYPROTEIN COXSACKIEVIRUS A21 (STRAIN COE) 1120-1157 PPOLG_COXA3 GENOME POLYPROTEIN COXSACKIEVIRUS A23 (ECHO 9 VIRUS) (EC-9-V) 67-99 PPOLG_COXA9 GENOME POLYPROTEIN COXSACKIEVIRUS A9 (STRAIN GRIGGS) 1601-1633 PPOLG_COXB1 GENOME POLYPROTEIN COXSACKIEVIRUS B1 1582-1614 PPOLG_COXB3 GENOME POLYPROTEIN COXSACKIEVIRUS B3 1585-1617 PPOLG_COXB4 GENOME POLYPROTEIN COXSACKIEVIRUS B4 1583-1615 PPOLG_COXB5 GENOME POLYPROTEIN COXSACKIEVIRUS B5 835-868 1585-1617 PPOLG_DEN1S GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90) 1111-1145 1485-1519 2401- 2434 PPOLG_DEN1W GENOME POLYPROTEIN DENGUE VIRUS TYPE 1 (STRAIN WESTERN PACIFIC) 1112-1146 PPOLG_DEN26 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681) 61-95 1112-1146 PPOLG_DEN27 GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53) 61-95 1112-1146 PPOLG_DEN2D GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN D2-04) 61-95 PPOLG_DEN2J GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN JAMAICA) 61-95 1112-1146 PPOLG_DEN2N GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C) 364-398 PPOLG_DEN2P GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN PR159/S1) 61-95 1112-1146 PPOLG_DEN2T GENOME POLYPROTEIN DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974 832-866 PPOLG_DEN3 GENOME POLYPROTEIN DENGUE VIRUS TYPE 3 61-95 2399-2432 PPOLG_DEN4 GENOME POLYPROTEIN DENGUE VIRUS TYPE 4 60-94 PPOLG_ECIIG GENOME POLYPROTEIN ECHOVIRUS II (STRAIN GREGORY) 774-806 PPOLG_EMCV GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS 1194-1226 1463-1501 PPOLG_EMCVB GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-B NONDIABETOGENIC) 1196-1228 1465-1503 PPOLG_EMCVD GENOME POLYPROTEIN ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-D DIABETOGENIC) 1196-1228 1465-1503 PPOLG_FMDV1 GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61) (APHTHOVIRUS A) 1036-1064 1098-1133 1167- 1465- 1199 1501 PPOLG_FMDVA GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12) (APHTHOVIRUS A) 1036-1074 1098-1133 1167- 1465- 1199 1501 PPOLG_FMDVO GENOME POLYPROTEIN FOOT-AND-MOUTH DISEASE VIRUS (STRAINS O1K AND O1BFS) 1098-1133 1167-1199 1465- 1501 PPOLG_HCV1 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE 1) (HCV) 1640-1670 PPOLG_HCVA GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN ALFORT) (SWINE FEVER VIRUS) 1363-1393 1560-1588 3131- 3159 PPOLG_HCVB GENOME POLYPROTEIN HOG CHOLERA VIRUS (STRAIN BRESCIA) (SWINE FEVER VIRUS) 102-135 1560-1588 3131- 3159 PPOLG_HCVBK GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE BK) (HCV) 1640-1670 PPOLG_HCVH GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE H) (HCV) 1640-1670 PPOLG_HCVH4 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HCV-476) (HCV) 254-291 PPOLG_HCVJ6 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J6) (HCV) 711-742 PPOLG_HCVJ8 GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE HC-J8) (HCV) 711-742 1893-1924 PPOLG_HCVJA GENOME POLYPROTEIN HEPATITIS C VIRUS (ISOLATE JAPANESE) (HCV) 1640-1670 PPOLG_HCVJT GENOME POLYPROTEIN HEPATITIS VIRUS C (ISOLATE HC-JT) (HCV) 1640-1670 PPOLG_HCVTW GENOME POLYPROIEIN HEPATITIS C VIRUS (ISOLATE TAIWAN) (HCV) 1640-1670 PPOLG_HPAV2 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 24A) 1514-1550 2068-2099 PPOLG_HPAV4 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 43C) 1514-1550 2068-2099 PPOLG_HPAV8 GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN 18F) 1514-1550 2068-2099 PPOLG_HPAVH GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN HM-175) 1515-1551 2069-2100 PPOLG_HPAVL GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN LA) 1515-1551 2069-2100 PPOLG_HPAVM GENOME POLYPROTEIN HEPATITIS A VIRUS (STRAIN MBB) 1515-1551 2069-2100 PPOLG_HPAVS GENOME POLYPROTEIN SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27) 831-868 1517-1553 PPOLG_HRV14 GENOME POLYPROTEIN HUMAN RHINOVIRUS 14 (HRV-14) 1094-1132 2005-2041 PPOLG_HRV1B GENOME POLYPROTEIN HUMAN RHINOVIRUS 1B (HRV-1B) 1453-1485 1816-1849 1983- 2019 PPOLG_HRV2 GENOME POLYPROTEIN HUMAN RHINOVIRUS 2 (HRV-2) 1446-1475 1809-1842 1976- 2012 PPOLG_HRV89 GENOME POLYPROTEIN HUMAN RHINOVIRUS 89 (HRV-89) 1460-1492 1823-1856 1990- 2026 PPOLG_HUEV7 GENOME POLYPROTEIN HUMAN ENTEROVIRUS 70 (STRAIN J670/71 1108-1145 PPOLG_IBDVO STRUCTURAL POLYPROTEIN AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN OH) 222-260 PPOLG_JAEV1 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14) 61-95 1233-1269 1516- 2779- 3274- 1549 2813 3311 PPOLG_JAEV5 GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V)) 61-95 1233-1269 1516- 2779- 3274- 1549 2813 3311 PPOLG_JAEVJ GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982) 61-95 1233-1269 1516- 2779- 3274- 1549 2813 3311 PPOLG_JAEVN GENOME POLYPROTEIN JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA) 1161-1197 PPOLG_KUNJM GENOME POLYPROTEIN KUNJIN VIRUS (STRAIN MRM61C) 61-95 561-594 3275- 3312 PPOLG_LANVT GENOME POLYPROTEIN LANGAT VIRUS (STRAIN TP21) 1157-1188 1519-1551 2230- 2366- 3095- 2264 2398 3132 PPOLG_MCFA GENOME POLYPROTEIN MOSQUITO CELL FUSING AGENT (CFA FLAVIVIRUS) 1174-1206 1330-1359 PPOLG_MDMV GENOME POLYPROTEIN MAIZE DWARF MOSAIC VIRUS (MDMV) 322-351 PPOLG_MVEV GENOME POLYPROTEIN MURRAY VALLEY ENCEPHALITIS VIRUS 61-95 1305-1342 PPOLG_OMV GENOME POLYPROTEIN ORNITHOGALUM MOSAIC VIRUS 344-376 PPOLG_PEMVC GENOME POLYPROTEIN PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE) (PEMV) 826-859 1086-1124 PPOLG_POL1M GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 1121-1158 PPOLG_POL1S GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN SABIN) 1122-1159 PPOLG_POL2L GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN LANSING) 1120-1157 PPOLG_POL2W GENOME POLYPROTEIN POLIOVIRUS TYPE 2 (STRAIN W-2) 1120-1157 PPOLG_POL32 GENOME POLYPROTEIN POLIOVIRUS TYPE 3 (STRAIN 23127) 1119-1156 PPOLG_POL3L GENOME POLYPROTEIN POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND P3/LEON 12A[1]B) 1119-1156 PPOLG_PPVD GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN D) (PPV) 2960-2991 3084-3113 PPOLG_PPVEA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN EL AMAR) (PPV) 1337-1368 1461-1490 PPOLG_PPVNA GENOME POLYPROTEIN PLUM POX POTYVIRUS (ISOLATE NAT) (PPV) 2944-2975 3068-3097 PPOLG_PPVRA GENOME POLYPROTEIN PLUM POX POTYVIRUS (STRAIN RANKOVIC) (PPV) 2959-2990 3083-3112 PPOLG_PSBMV GENOME POLYPROTEIN PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPDI) 931-966 1411-1445 3149- 3178 PPOLG_PVYHU GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN HUNGARIAN) (PVY) 1302-1336 3004-3033 PPOLG_PVYN GENOME POLYPROTEIN POTATO VIRUS Y (STRAIN N) (PVY) 1302-1336 PPOLG_PYFVI GENOME POLYPROTEIN PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121) (PYFV) 230-262 1110-1139 1903- 1931 PPOLG_SBMVN GENOME POLYPROTEIN SOYBEAN MOSAIC VIRUS (STRAIN N) 245-274 PPOLG_STEVM GENOME POLYPROTEIN ST. LOUIS ENCEPHALITIS VIRUS (STRAIN MSI-7) 61-95 1301-1331 PPOLG_SUMVS GENOME POLYPROTEIN SUGARCANE MOSAIC VIRUS (STRAIN SC) 307-336 PPOLG_SVDVH GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76) 1585-1617 PPOLG_SVDVU GENOME POLYPROTEIN SWINE VESICULAR DISEASE VIRUS (STRAIN UKG/27/72) 1585-1617 PPOLG_TBEVS GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN) (TBEV) 835-869 1157-1188 2366- 3093- 2398 3130 PPOLG_TBEVW GENOME POLYPROTEIN TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE) (TBEV) 1157-1188 2366-2398 3095- 3132 PPOLG_TEV GENOME POLYPROTEIN TOBACCO ETCH VIRUS (TEV) 827-865 2998-3027 PPOLG_TMEVB GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN BEAN 8386) 1074-1102 1193-1221 1470- 1908- 1508 1939 PPOLG_TMEVD GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN DA) 1072-1100 1191-1219 1468- 1906- 1506 1937 PPOLG_TMEVG GENOME POLYPROTEIN THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN GDVH) 1074-1102 1193-1221 1470- 1908- 1508 1939 PPOLG_TUMV GENOME POLYPROTEIN TURNIP MOSAIC VIRUS (TUMV) 1573-1602 PPOLG_TVMV GENOME POLYPROTEIN TOBACCO VEIN MOTTLING VIRUS (TVMV) 2698-2733 PPOLG_WMV2 GENOME POLYPROTEIN WATERMELON MOSAIC VIRUS II 958-987 PPOLG_WNV GENOME POLYPROTEIN WEST NILE VIRUS 61-95 557-590 3272- 3309 PPOLG_YEFV1 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN 17D) 1157-1186 1228-1266 1495- 2308- 3092- 1531 2340 3127 PPOLG_YEFV2 GENOME POLYPROTEIN YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204) 1157-1186 1228-1266 1495- 2308- 3092- 1531 2340 3127 PPOLG_ZYMV GENOME POLYPROTEIN ZUCCHINI YELLOW MOSAIC VIRUS (ZYMV) 329-358 PPOLH_POLIM GENOME POLYPROTEIN POLIOVIRUS TYPE 1 (STRAIN MAHONEY) 1122-1159 PPOLH_WMV2 GENOME POLYPROTEIN WATERMELON MOSAIC VIRUS II 244-273 PPOLN_EEVVT NON-STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TRINIDAD DONKEY) 613-648 1436-1468 PPOLN_FCVC6 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN CFI/68 FIV) (FCV) 327-365 PPOLN_FCVF4 NON-STRUCTURAL POLYPROTEIN FELINE CALICIVIRUS (STRAIN JAPANESE F4) (FCV) 300-333 PPOLN_FCVF9 NON-STRUCTURAL POLYFROTEIN FELINE CALICIVIRUS (STRAIN F9) (FCV) 803-841 PPOLN_HEVBU NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN BURMA) (HEV) 1618-1652 PPOLN_HEVME NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN MEXICO) (HEV) 1616-1650 PPOLN_HEVMY NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN MYANMAR) (HEV) 1618-1652 PPOLN_HEVPA NON-STRUCTURAL POLYPROTEIN HEPATITIS E VIRUS (STRAIN PAKISTAN) (HEV) 1617-1651 PPOLN_MIDDV NON-STRUCTURAL POLYPROTEIN MIDDELBURO VIRUS 25-57 PPOLN_ONNVG NON-STRUCTURAL POLYPROTEIN O′NYONG-NYONG VIRUS (STRAIN GULU) (ONN) 1144-1180 1404-1439 PPOLN_RHDV NON-STRUCTURAL POLYPROTEIN RABBIT HEMORRHAGIC DISEASE VIRUS (RHDV 299-337 1562-1594 PPOLN_SFV NON-STRUCTURAL POLYPROTEIN SEMLIKI FOREST VIRUS 1146-1175 1406-1441 PPOLN_SINDO NON-STRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5) 1454-1486 PPOLN_SINDV NON-STRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAIN HRSP) 1454-1486 PPOLS_EEEV STRUCTURAL POLYPROTEIN EASTERN EQUINE ENCEPHALITIS VIRUS 524-556 PPOLS_EEEV3 STRUCTURAL POLYPROTEIN EASTERN EQUINE ENCEPHALITIS VIRUS (STRAIN VA33[TEN BROECK]) 525-557 PPOLS_EEVV8 STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TC-83) 1203-1239 PPOLS_EEVVT STRUCTURAL POLYPROTEIN VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TRINIDAD DONKEY) 1203-1239 PPOLS_ONNVG STRUCTURAL POLYPROTEIN O'NYONG-NYONG VIRUS (STRAIN GULU) (ONN) 1150-1182 1201-1235 PPOLS_RRVN STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN NB5092) (RRV) 1216-1250 PPOLS_RRVT STRUCTURAL POLYPROTEIN ROSS RIVER VIRUS (STRAIN T48) (RRV) 1216-1250 PPOLS_SFV STRUCTURAL POLYPROTEIN SEMLIKI FOREST VIRUS 1215-1251 PPOLS_SINDO STRUCTURAL POLYPROTEIN SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5) 1197-1233 PPOLS_SINDV STRUCTURAL POLYPROTEIN SINDBIS VIRUS (STRAINS HRSP AND HRLP) 1197-1233 PPOLS_WEEV STRUCTURAL POLYPROTEIN WESTERN EQUINE ENCEPHALITIS VIRUS 1188-1224 PPOL_BIV06 POL POLYPROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) (BIV) 742-773 PPOL_BIV27 POL POLYPROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV) 742-773 PPOL_BLVAU POL POLYPROTEIN BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) (BLV) 343-374 PPOL_CAEVC POL POLYPROTEIN CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) (CAEV) 206-240 322-355 PPOL_COYMV PUTATIVE POLYPROTEIN COMMELINA YELLOW MOTTLE VIRUS (COYMV) 1234-1267 1484-1518 1750- 1800- 1788 1831 PPOL_EIAV9 POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) (EIAV) 166-198 506-539 PPOL_EIAVC POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) (EIAV) 166-198 506-539 PPOL_EIAVY POL POLYPROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) (EIAV) 166-198 505-538 PPOL_FOAMV POL POLYPROTEIN HUMAN SPUMARETROVIRUS (FOAMY VIRUS) 126-154 PPOL_GALV POL POLYPROTEIN GIBBON APE LEUKEMIA VIRUS 348-378 PPOL_HTL1A POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK) (HTLV-1) 657-688 PPOL_HTL1C POL POLYPROTEIN HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN ISOLATE) (HTLV-1) 657-688 PPOL_HV1A2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE) (HIV-1) 331-364 500-537 PPOL_HV1B1 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) (HIV-1) 343-376 512-549 PPOL_HV1B5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) (HIV-1) 343-376 512-549 PPOL_HV1BR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) (HIV-1) 343-376 512-549 PPOL_HV1EL POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) (HIV-1) 330-363 499-536 PPOL_HV1H2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) (HIV-1) 331-364 500-537 PPOL_HV1JR POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) (HIV-1) 335-368 504-541 PPOL_HV1MA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) (HIV-1) 330-363 PPOL_HV1MN POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) (HIV-1) 334-367 503-540 PPOL_HV1N5 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 ISOLATE) (HIV-1) 331-364 500-537 PPOL_HV1ND POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) (HIV-1) 330-363 499-536 PPOL_HV1OY POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) (HIV-1) 331-364 500-537 PPOL_HV1PV POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) (HIV-1) 343-376 512-549 PPOL_HV1RH POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) (HIV-1) 330-363 499-536 PPOL_HV1U4 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN UGANDAN/ISOLATE 330-363 499-536 PPOL_HV1Z2 POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 ISOLATE) (HIV-1) 330-363 499-536 PPOL_HV2CA POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) (HIV-2) 353-386 PPOL_HV2NZ POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) (HIV-2) 353-386 PPOL_HV2RO POL POLYPROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) (HIV-2) 354-387 PPOL_IPHA PUTATIVE POL POLYPROTEIN HAMSTER INTRACISTERNAL A-PARTICLE (IAP-H18 460-496 PPOL_JSRV POL POLYPROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 186-220 PPOL_MPMV POL POLYPROTEIN SIMIAN MASON-PFIZER VIRUS (MPMV) 650-681 PPOL_OMVVS POL POLYPROTEIN OVINE LENTIVIRUS (STRAIN SA-OMVV) 61-98 102-130 182- 298- 216 331 PPOL_RTBV POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS (RTBV) 788-824 891-919 1399- 1433 PPOL_RTBVP POLYPROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) (RTBV) 788-824 891-919 1399- 1433 PPOL_SFV3L POL POLYPROTEIN SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) (SFV-3) 337-365 PPOL_SIVCI POL POLYPROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV) 355-388 524-561 PPOL_SOCMV ENZYMATIC POLYPROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 17-55 58-89 PPOL_SRV1 POL POLYPROTEIN SIMIAN RETROVIRUS SRV-1 650-681 PPOL_VILV POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514)  80-117 201-235 317- 350 PPOL_VILV1 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1)  80-117 317-350 PPOL_VILV2 POL POLYPROTEIN VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)  80-117 201-235 317- 350 PPP41_HSV6G PHOSPHOPROTEIN P41 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 60-91 PPTP_NPVAC PROTEIN-TYROSINE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 53-85 PHOSPHATASE PREEP_CSV REPEAT ELEMENT PROTEIN CAMPOLETIS SONORENSIS VIRUS (CSV) 113-149 PREV_BIV27 REV PROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV)  74-109 PREV_EIAV9 REV PROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) (EIAV) 44-79 PREV_EIAVC REV PROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) (EIAV) 44-79 PREV_EIAVY REV PROTEIN EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) (EIAV)  74-109 PREV_SIVAT REV PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) (SIV-AGM) 25-62 PRIR1_ASFM2 RIBONUCLEOSIDE-DIPHOSPHATE AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI LIL 20/1) (ASFV) 630-666 REDUCTASE LARGE CH PRIR1_HCMVA RIBONUCLEOSIDE-DIPHOSPHATE HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 279-311 393-430 449- REDUCTASE LARGE CH 477 PRIR1_HSVEB RIBONUCLEOSIDE-DIPHOSPHATE EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 60-92 503-531 REDUCTASE LARGE CH PRIR1_VACCC RIBONUCLEOSIDE-DIPHOSPHATE VACCINIA VIRUS (STRAIN COPENHAGEN) 203-235 REDUCTASE LARGE CH PRIR1_VACCV RIBONUCLEOSIDE-DIPHOSPHATE VACCINIA VIRUS (STRAIN WR) 203-235 REDUCTASE LARGE CH PRIR1_VARV RIBONUCLEOSIDE-DIPHOSPHATE VARIOLA VIRUS 203-235 REDUCTASE LARGE CH PRIR1_VZVD RIBONUCLEOSIDE-DIPHOSPHATE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 34-72 221-254 488- REDUCTASE LARGE CH 516 PRMIL_AVEVR RMIL SERINE/THREONINE- AVIAN ROUS-ASSOCIATED VIRUS TYPE 1 149-177 PROTEIN KINASE TRANSFORM PRMIL_AVIII RMIL SERINE/THREONINE- AVIAN RETROVIRUS IC10 133-161 PROTEIN KINASE TRANSFORM PRP94_VACCV RNA-POLYMERASE-ASSOCIATED VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 399-427 TRANSCRIPTION SPECIF PRP94_VARV RNA-POLYMERASE-ASSOCIATED VARIOLA VIRUS 399-427 TRANSCRIPTION SPECIF PRPO1_VACCV DNA-DIRECTED RNA VACCINIA VIRUS (STRAIN WR) 1005-1033 POLYMERASE 147 KD POLYPEPTIDE PRPO2_CAPVK DNA-DIRECTED RNA CAPRIPOXVIRUS (STRAIN KS-1) 297-333 667-696 POLYMERASE 132 KD POLYPEPTIDE PRPO2_COWPX DNA-DIRECTED RNA COWPOX VIRUS (CPV) 202-236 542-578 POLYMERASE 132 KD POLYPEPTIDE PRPO2_VACCV DNA-DIRECTED RNA VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 202-236 542-578 POLYMERASE 132 KD POLYPEPTIDE PRPO2_VARV DNA-DIRECTED RNA VARIOLA VIRUS 202-236 542-578 POLYMERASE 132 KD POLYPEPTIDE PRPO7_VACCV DNA-DIRECTED RNA VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 38-66 POLYMERASE 19 KD POLYPEPTIDE PRPO7_VARV DNA-DIRECTED RNA VARIOLA VIRUS 38-66 POLYMERASE 19 KD POLYPEPTIDE PRPO8_FOWP1 DNA-DIRECTED RNA FOWLPOX VIRUS (STRAIN FP-1) 57-88 POLYMERASE 18 KD POLYPEPTIDE PRPOA_LELV RNA-DIRECTED RNA LELYSTAD VIRUS (LV) 1233-1268 3133-3163 3426- POLYMERASE 3457 PRPOL_EAV RNA-DIRECTED RNA EQUINE ARTERITIS VIRUS (EAV) 171-207 3041-3072 POLYMERASE PRRP1_DHVI1 RNA-DIRECTED RNA DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)  96-125 199-234 POLYMERASE SUBUNIT P1 PRRP1_IAVI7 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 138-170 POLYMERASE SUBUNIT P1 PRRP1_INCJJ RNA-DIRECTED RNA INFLUENZA C VIRUS (STRAIN C/JJ/50) 564-598 POLYMERASE SUBUNIT P1 PRRP2_IAANN RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 398-435 484-518 POLYMERASE SUBUNIT P2 PRRP2_IADH2 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAFPR RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK/34) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAGU2 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAHLO RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/EQUINE /LONDON/1416/73) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAHTE RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/EQUINE /TENNESSEE/5/86) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAKOR RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/KOREA/426/68) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IALE1 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IALE2 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAMAN RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IANT6 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/NT/60/68 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAPI0 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAPUE RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34 484-518 POLYMERASE SUBUNIT P2 PRRP2_IARUD RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW JERSEY/47/85) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IASIN RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IATKM RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAVI7 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAWIL RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAZH2 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAZH3 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAZI1 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 484-518 POLYMERASE SUBUNIT P2 PRRP2_IAZTF RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77) 484-518 POLYMERASE SUBUNIT P2 PRRP3_IABUD RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/HOKKAIDO/1/77) 515-553 585-613 POLYMERASE SUBUNIT P3 PRRP3_IAFPR RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK/34) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IAFPW RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/WEYBRIDGE) 579-613 POLYMERASE SUBUNIT P3 PRRP3_IAGU2 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IAGUA RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IAHPR RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/EQUINE /PRAGUE/1/56) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IAMAN RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IARUD RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW JERSEY/47/85) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IASE2 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/133/82) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IATKM RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80) 585-613 POLYMERASE SUBUNIT P3 PRRP3_IAZI1 RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 585-613 POLYMERASE SUBUNIT P3 PRAP3_IAZTE RNA-DIRECTED RNA INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77) 585-613 POLYMERASE SUBUNIT P3 PRRP3_INBAC RNA-DIRECTED RNA INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTED]) 735-769 POLYMERASE SUBUNIT P3 PRRP3_INBAD RNA-DIRECTED RNA INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]) 735-769 POLYMERASE SUBUNIT P3 PRRP3_INCBE RNA-DIRECTED RNA INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85) 609-641 POLYMERASE SUBUNIT P3 PRRP3_INCJJ RNA-DIRECTED RNA INFLUENZA C VIRUS (STRAIN C/JJ/50) 609-641 POLYMERASE SUBUNIT P3 PRRP3_THOGV RNA-DIRECTED RNA THOGOTO VIRUS (THO) 109-145 324-356 POLYMERASE SUBUNIT P3 PRRPA_CVH22 RNA-DIRECTED RNA POLYMERASE HUMAN CORONAVIRUS (STRAIN 229E) 410-443 712-745 1262- 1963- 2078- 2474- 3153- 1295 1999 2112 2508 3191 PRRPA_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 708-740 3544-3577 3757- 3933- 3785 3961 PRRPB_BEV RNA-DIRECTED RNA POLYMERASE BERNE VIRUS (BEV) 941-969 2137-2169 2178- 2206 PRRPB_CVMA5 RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN A59) 346-380 684-714 1689- 2698- 1722 2730 PRRPB_CVMJH RNA-DIRECTED RNA POLYMERASE MURINE CORONAVIRUS MHV (STRAIN JHM) 346-380 684-714 1687- 2356- 2696- 1720 2391 2728 PRRPB_CVPFS RNA-DIRECTED RNA POLYMERASE PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS 173-207 322-350 482- 515 PRRPB_CVPR8 RNA-DIRECTED RHA POLYMERASE PORCINE RESPIRATORY CORONAVIRUS  80-113 PRRPB_IBVB RNA-DIRECTED RNA POLYMERASE AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV) 636-670 PRRPL_BUNYW RNA POLYMERASE BUNYAMWERA VIRUS 303-331 1096-1128 PRRPL_HANTV RNA POLYMERASE HANTAAN VIRUS (STRAIN 76-118) (KOREAN HEMORRHAGIC FEVER VIRUS) 1938-1971 PRRPL_HRSVA RNA POLYMERASE BETA SUBUNIT HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 892-922 1181-1213 PRRPL_MABVM RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN MUSOKE) 144-176 698-736 1042- 1797- 1074 1832 PRRPL_MABVP RNA-DIRECTED RNA POLYMERASE MARBURG VIRUS (STRAIN POPP) 144-176 698-736 1042- 2223- 1074 2253 PRRPL_MEASE RNA POLYMERASE BETA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 193-227 647-683 788- 1160- 1886- 825 1192 1914 PRRPL_MUMPM RNA POLYMERASE BETA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 1882-1913 PRRPL_NDVB RNA POLYMERASE BETA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) (NDV) 626-661 1571-1603 PRRPL_PI2HT RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) (PIV-2) 268-305 558-595 654- 1562- 1881- 2025- 688 1599 1912 2053 PRRPL_PI3H4 RNA POLYMERASE BETA SUBUNIT HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 41-76 735-764 784- 2111- 814 2139 PRRPL_RABVP RNA POLYMLRASE BETA SUBUNIT RABIES VIRUS (STRAIN PV) 60-90 804-837 1365- 1930- 1394 1962 PRRPL_RABVS RNA POLYMERASE BETA SUBUNIT RABIES VIRUS (STRAIN SAD B19) 60-90 804-837 1365- 1930- 1394 1962 PRRPL_RDV RNA-DIRECTED RNA POLYMERASE RICE DWARF VIRUS (RDV) 1293-1323 PRRPL_RVFVZ RNA-DIRECTED RNA POLYMERASE RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) (RVFV) 1018-1055 2009-2044 PRRPL_SEND5 RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 194-231 233-269 735- 784- 2140- 764 814 2177 PRRPL_SENDE RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN ENDERS) 14-51 53-89 555- 1927- 1960- 584 1955 1997 PRRPL_SENDZ RNA POLYMERASE BETA SUBUNIT SENDAI VIRUS (STRAIN Z) 194-231 233-269 735- 784- 2140- 764 814 2177 PRRPL_SEOU8 RNA-DIRECTED RNA POLYMERASE SEOUL VIRUS (STRAIN 80-39) 394-431 1938-1971 2081- 2119 PRRPL_SV5WR RNA POLYMERASE BETA SUBUNIT SIMIAN VIRUS 5 (STRAIN 21004-WR) (SV5) 557-594 1094-1122 2020- 2051 PRRPL_SYNV RNA POLYMERASE BETA SUBUNIT SONCHUS YELLOW NET VIRUS (SYNV) 126-164 605-634 820- 918- 1484- 856 951 1517 PRRPL_TSWVB RNA-DIRECTED RNA POLYMERASE TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNH1/BR-01) (TSWV) 43-79 843-880 2266- 2369- 2481- 2805- 2298 2403 2511 2840 PRRPL_UUK RNA POLYMERASE UUKUNIEMI VIRUS (UUK) 1017-1051 1147-1177 1293- 2060- 1321 2095 PRRPL_VSVJH RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS 209-246 312-349 1011- 1662- 1956- 1039 1697 1989 PRRPL_VSVJO RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS 1011-1039 1956-1989 PRRPL_VSVSJ RNA POLYMERASE BETA SUBUNIT VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 138-171 209-246 312- 961- 1011- 1739- 2051- 349 999 1039 1772 2087 PRRPO_BWYVF PUTATIVE RNA-DIRECTED RNA BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) (BWYV) 346-374 POLYMERASE PRRPO_BYDVI PUTATIVE RNA-DIRECTED RNA BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PS1) (BYDV) 722-755 POLYMERASE PRRPO_BYDVP PUTATIVE RNA-DIRECTED RNA BARLEY YELLOW DWARF VIRUS (ISOLATE PAV) (BYDV) 722-755 POLYMERASE PRRPO_BYDVR PUTATIVE RNA-DIRECTED RNA BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV) (BYDV) 722-755 POLYMERASE PRRPO_CARMV PUTATIVE RNA-DIRECTED RNA CARNATION MOTTLE VIRUS (CARMV)  4-37 POLYMERASE PRRPO_CGMVS PUTATIVE RNA-DIRECTED RNA CUCUMBER GREEN MOTTLE MOSAIC VIRUS (WATERMELON STRAIN SH) 443-481 725-755 1095- 1565- POLYMERASE 1132 1597 PRRPO_CNV PROBABLE RNA-DIRECTED RNA CUCUMBER NECROSIS VIRUS (CNV) 470-501 POLYMERASE PRRPO_CRV PROBABLE RNA-DIRECTED RNA CYMBIDIUM RINGSPOT VIRUS 28-62 267-300 470- POLYMERASE 501 PRRPO_IBDV5 PUTATIVE RNA-DIRECTED RNA AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70) (IBDV) 186-218 274-302 POLYMERASE PRRPO_IBDVA PUTATIVE RNA-DIRECTED RNA AVIAN INFECTIOUS BURSAL DISEASE VIRUS 260-288 511-543 599- POLYMERASE 627 PRRPO_IPNVJ PUTATIVE RNA-DIRECTED RNA INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE JASPER) 360-390 749-778 POLYMERASE PRRPO_IPNVS PUTATIVE RNA-DIRECTED RNA INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE SP) (IPNV) 360-390 749-778 POLYMERASE PRRPO_LYCVA RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN ARMSTRONG) 109-137 263-291 2077- 2106 PRRPO_LYCVW RNA POLYMERASE LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE) 109-137 PRRPO_MCMV PROBABLE RNA-DIRECTED RNA MAIZE CHLOROTIC MOTTLE VIRUS (MCMV) 16-48 53-81 POLYMERASE PRRPO_PLRVI PUTATIVE RNA-DIRECTED RNA POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV) 576-607 POLYMERASE PRRPO_PLRVW PUTATIVE RNA-DIRECTED RNA POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) (PLRV) 576-607 POLYMERASE PRRPO_PPMVS PUTATIVE RNA-DIRECTED RNA PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) (PPMV) 375-407 702-730 859- 1069- 1533- POLYMERASE 891 1106 1565 PRRPO_RCNMV PUTATIVE RNA-DIRECTED RNA RED CLOVER NECROTIC MOSAIC VIRUS (RCNMV) 278-314 320-353 POLYMERASE PRRPO_REOVJ RNA-DIRECTED RNA POLYMERASE REOVIRUS (TYPE 2/STRAIN D5/JONES) 284-315 PRRPO_ROTBR RNA-DIRECTED RNA POLYMERASE BOVINE ROTAVIRUS (STRAIN RF) 25-60 200-231 247- SUBUNIT VP1 276 PRRPO_ROTBU RNA-DIRECTED RNA POLYMERASE BOVINE ROTAVIRUS (STRAIN UK) 200-231 247-276 SUBUNIT VP1 PRRPO_ROTPG RNA-DIRECTED RNA POLYMERASE PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 200-231 247-276 SUBUNIT VP1 PRRPO_ROTS1 RNA-DIRECTED RNA POLYMERASE SIMIAN 11 ROTAVIRUS (STRAIN SA11) 25-60 200-231 247- SUBUNIT VP1 276 PRRPO_TACV RNA POLYMERASE TACARIBE VIRUS 17-52 109-138 2078- 2112 PRRPO_TBSVC PROBABLE RNA-DIRECTED RNA TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY) (TBSV) 470-501 POLYMERASE PRRPO_TCV PROBABLE RNA-DIRECTED RNA TURNIP CRINKLE VIRUS (TCV) 280-318 POLYMERASE PRRPO_TMGMV PUTATIVE RNA-DIRECTED RNA TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2) 67-97 128-159 209- 376- 450- 855- 1527- POLYMERASE 244 406 483 887 1559 PRRPO_TMV PUTATIVE RNA-DIRECTED RNA TOBACCO MOSAIC VIRUS (VULGARE) (TMV) 128-159 376-406 700- 1533- POLYMERASE 728 1565 PRRPO_TMVKR PUTATIVE RNA-DIRECTED RNA TOBACCO MOSAIC VIRUS (STRAIN KOREAN) (TMV) 128-159 376-406 700- 1533- POLYMERASE 728 1565 PRRPO_TMVTO PUTATIVE RNA-DIRECTED RNA TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) (TMV) 128-159 376-406 700- 857- 1533- POLYMERASE 728 889 1565 PRRPO_TNVA RNA-DIRECTED RNA POLYMERASE TOBACCO NECROSIS VIRUS (STRAIN A) (TNV) 231-263 PRRPO_TNVD RNA-DIRECTED RNA POLYMERASE TOBACCO NECROSIS VIRUS (STRAIN D) (TNV)  5-40 234-270 PRRPP_CDVO RNA POLYMERASE ALPHA SUBUNIT CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) (CDV) 295-332 PRRPP_MEASE RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN EDMONSTON) 295-332 PRRPP_MEASI RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN IP-3-CA) 295-332 PRRPP_MEASY RNA POLYMERASE ALPHA SUBUNIT MEASLES VIRUS (STRAIN YAMAGATA-1) 295-332 PRRPP_MUMPI RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN SBL-1) 211-248 PRRPP_MUMPE RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN ENDERS) 212-249 PRRPP_MUMPM RNA POLYMERASE ALPHA SUBUNIT MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 212-249 PRRPP_NDVA RNA POLYMERASE ALPHA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-VICTORIA/32) (NDV) 220-255 PRRPP_NDVB RNA POLYMERASE ALPHA SUBUNIT NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) (NDV) 220-255 PRRPP_PI2H RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (PIV-2 216-253 PRRPP_PI2HT RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) (PIV-2) 216-253 PRRPP_PI4HA RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) (PIV-4A) 220-257 332-364 PRRPP_PI4HB RNA POLYMERASE ALPHA SUBUNIT HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333) (PIV-4B) 220-257 332-364 PRRPP_PIRYV RNA POLYMERASE ALPHA SUBUNIT PIRY VIRUS 134-168 PRRPP_RABVA RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN AVO1) 216-244 PRRPP_RABVC RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN CVS-11) 216-244 PRRPP_RABVE RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN ERA), AND RABIES VIRUS (STRAIN PM) 216-244 PRRPP_RABVP RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN PV)  89-122 216-244 PRRPP_RABVS RNA POLYMERASE ALPHA SUBUNIT RABIES VIRUS (STRAIN SAD B19) 216-244 PRRPP_SEND5 RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 530-566 PRRPP_SEND6 RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN 6/94) 530-566 PRRPP_SENDF RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN FUSHIMI) 530-566 PRRPP_SENDH RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN HARRIS) 530-566 PRRPP_SENDZ RNA POLYMERASE ALPHA SUBUNIT SENDAI VIRUS (STRAIN Z) 530-566 PRRPP_SV5 RNA POLYMERASE ALPHA SUBUNIT SIMIAN VIRUS 5 (STRAIN W3) (SV5) 199-236 PRRPP_VSVJM RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRAIN MISSOURI) 198-230 PRRPP_VSVJO RNA POLYMERASE ALPHA SUBUNIT VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRAIN OGDEN) 197-230 PSODC_VACCC SUPEROXIDE DISMUTASE VACCINIA VIRUS (STRAIN COPENHAGEN) 19-55 LIKE PROTEIN PSODC_VACCV SUPEROXIDE DISMUTASE VACCINIA VIRUS (STRAIN WR) 19-55 LIKE PROTEIN PSODC_VARV SUPEROXIDE DISMUTASE VARIOLA VIRUS 19-55 LIKE PROTEIN PSPHR_AMEPV SPHEROIDIN AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 58-86 138-172 627- 671- 659 701 PSPI1_MYXVL SERPIN I MYXOMA VIRUS (STRAIN LAUSANNE) 167-200 PSPI3_VACCC SERINE PROTEINASE INHIBITOR 3 VACCINIA VIRUS (STRAIN COPENHAGEN) 112-140 PSPI3_VACCV SERINE PROTEINASE INHIBITOR 3 VACCINIA VIRUS (STRAIN WR) 112-140 PSPI3_VARV SERINE PROTEINASE INHIBITOR 1 VARIOLA VIRUS 116-144 PTAG8_FOWPV TRANS-ACTIVATOR PROTEIN FP0 FOWLPOX VIRUS 199-230 PTALA_BFDV LARGE T ANTIGEN BUDGERIGAR FLEDGLING DISEASE VIRUS (BFDV)  99-129 172-210 461- 491 PTAMI_POVHA MIDDLE T ANTIGEN HAMSTER POLYOMAVIRUS 106-138 PTAMI_POVM3 MIDDLE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN 3) 43-80 PTAMI_POVMA MIDDLE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN A2) 43-80 PTAMI_POVMC MIDDLE T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL-PLAQUE) 43-80 PTASM_POVBA SMALL T ANTIGEN POLYOMAVIRUS BK (STRAIN AS) 130-162 PTASM_POVBK SMALL T ANTIGEN POLYOMAVIRUS BK 130-162 PTASM_POVHA SMALL T ANTIGEN HAMSTER POLYOMAVIRUS 106-138 PTASM_POVMA SMALL T ANTIGEN MOUSE POLYOMAVIRUS (STRAIN A2) 43-80 PTASM_SV40 SMALL T ANTIGEN SIMIAN VIRUS 40 (SV40) 132-164 PTEGU_EBV LARGE TEGUMENT PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 143-173 1469-1503 1791- 3102- 1819 3137 PTEGU_HCMVA PROBABLE LARGE TEGUMENT HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 161-192 699-736 812- 2199- PROTEIN 840 2228 PTEGU_HSV6G LARGE TEGUMENT PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 222-259 566-601 615- 1436- 2037- 643 1469 2072 PTEGU_HSVEB LARGE TEGUMENT PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 265-297 559-589 1072- 3363- 1106 3392 PTEGU_HSVSA PROBABLE LARGE TEGUMENT HERPESVIRUS SAIMIRI (STRAIN 11) 467-505 714-751 823- 926- 1503- 2421- PROTEIN 861 960 1536 2457 PTERM_ADE07 DNA TERMINAL PROTEIN HUMAN ADENOVIRUS TYPE 7 369-400 PTMAF_AVIS4 TRANSFORMING PROTEIN MAF AVIAN MUSCULOAPONEUROTIC FIRBOSARCOMA VIRUS AS42 230-267 PTOP2_ASFB7 DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) (ASFV) 119-153 1105-1142 PTOP2_ASFM2 DNA TOPOISOMERASE II AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI LIL 20/1) (ASFV) 119-153 1104-1141 PTREL_AVIRE REL TRANSFORMING PROTEIN AVIAN RETICULOENDOTHELIOSIS VIRUS 189-226 PTYSY_VZVD THYMIDYLATE SYNTHASE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 121-156 PUIL_HSV6U PROTEIN IL HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 171-203 PUDPE_NPVAC ECDYSTEROID UDP- AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 185-219 387-425 452- GLUCOSYLTRANSFERASE 484 PRECURSOR PUL02_HCMVA HYPOTHETICAL PROTEIN UL2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 25-59 PUL06_EBV VIRION PROTEIN BBRF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 355-386 PUL06_HSV11 VIRION PROTEIN UL6 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 404-436 PUL06_HSVEB VIRION GENE 56 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 222-251 437-475 PUL06_HSVSA VIRION GENE 43 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 299-330 PUL06_VZVD VIRION GENE 54 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 223-252 502-530 PUL07_HCMVA HYPOTHETICAL PROTEIN UL7 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 186-216 PUL07_HSVEB GENE 55 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) Nov-39   PUL08_HCMVA HYPOTHETICAL PROTEIN UL8 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 65-96 PUL08_HSV11 PROTEIN UL8 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 614-648 PUL08_VZVD GENE 52 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 227-255 PUL09_HSV11 ORIGIN OF REPLICATION HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 678-713 BINDING PROTEIN PUL09_VZVD ORIGIN OF REPLICATION VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 168-204 BINDING PROTEIN PUL14_PRVN3 UL14 PROTEIN HOMOLOG PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV) 40-76 PUL16_HSV11 PROTEIN UL16 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 22-52 PUL17_HSV6U PROTEIN 10R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 302-339 PUL21_HSVEB GENE 40 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1) 294-328 PUL21_PRVN3 PROTEIN UL21 HOMOLOG PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV) 242-271 PUL21_VZVD GENE 38 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 56-92 375-412 PUL24_HCMVA HYPOTHETICAL PROTEIN UL24 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 52-87 PUL24_ILTVT PROTEIN UL24 HOMOLOG INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE V882) 158-196 PUL25_HSVEB VIRION PROTEIN UL25 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 343-379 PUL25_HSVSA VIRION GENE 19 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 290-323 PUL25_VZVD VIRION GENE 34 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 540-571 PUL28_HCMVA HYPOTHETICAL PROTEIN UL28 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 287-316 PUL31_HCMVA HYPOTHETICAL PROTEIN UL31 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 464-501 PUL31_HSVSA GENE 69 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 163-197 PUL32_EBV PROBABLE MAJOR ENVELOPE EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 367-405 GLYCOPROTEIN BFLF1 PUL32_HSV11 PROBABLE MAJOR ENVELOPE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 404-438 564-592 GLYCOPROTEIN UL32 PUL32_HSVEB MAJOR ENVELOPE EQUINE HERPESVIRUS TYPE 1  81-115 GLYCOPROTEIN 300 PUL32_HSVSA PROBABLE MAJOR ENVELOPE HERPESVIRUS SAIMIRI (STRAIN 11) 276-307 GLYCOPROTEIN 68 PUL32_VZVD PROBABLE MAJOR ENVELOPE VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 553-581 GLYCOPROTEIN 26 PUL34_HSVSA GENE 67 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  98-130 PUL35_HCMVA HYPOTHETICAL PROTEIN UL35 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 138-169 PUL36_HCMVA HYPOTHETICAL PROTEIN UL36 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 186-223 PUL37_EBV PROTEIN BOLF1 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)  85-123 PUL37_HSVEB GENE 23 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 702-732 778-812 PUL37_HSVSA GENE 63 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 566-602 PUL37_VZVD GENE 21 PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 598-629 706-736 776- 806 PUL38_HCMVA HYPOTHETICAL PROTEIN UL38 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 157-188 PUL41_VZVD HOST SHUTOFF VIRION PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 274-307 PUL43_HSV11 MEMBRANE PROTEIN UL43 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 41-70 PUL45_HSV11 GENE 15 MEMBRANE PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 34-64 277-308 PUL47_HCMVA PROTEIN UL47 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 438-471 741-777 PUL47_HSVE4 97 KD ALPHA TRANS-INDUCING EQUINE HERPESVIRUS TYPE 4 580-615 PROTEIN PUL47_HSVEB 97 KD ALPHA TRANS-INDUCING EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 587-622 PROTEIN PUL49_HSV11 TEGUMENT PROTEIN UL49 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 226-259 PUL49_HSVBP TEGUMENT PROTEIN UL49 BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2) 135-168 HOMOLOG PUL52_EBV PROBABLE DNA REPLICATION EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 582-617 PROTEIN BSLF1 PUL52_HSV11 DNA REPLICATION PROTEIN UL52 HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 599-629 771-805 PUL52_HSVEB DNA REPLICATION PROTEIN UL52 EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 316-344 580-618 912- 947 PUL52_HSVSA PROBABLE DNA REPLICATION GENE HERPESVIRUS SAIMIRI (STRAIN 11) 229-267 374-411 56 PROTEIN PUL53_HCMVA PROTEIN UL53 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 213-248 PUL53_HSV6U UL53 PROTEIN HOMOLOG HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 105-139 PUL60_HCMVA HYPOTHETICAL PROTEIN UL60 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 120-148 PUL70_HCMVA PROBABLE DNA REPLICATION HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 36-65 626-664 PROTEIN UL70 PUL77_HCMVA VIRION PROTEIN UL77 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 381-413 565-598 PUL78_HCMVA HYPOTHETICAL PROTEIN UL78 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 262-290 303-341 PUL79_HSVSA HYPOTHETICAL GENE 18 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 158-195 PUL87_HSV6U HYPOTHETICAL PROTEIN 5R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 130-159 PUL87_HSVSA HYPOTHETICAL GENE 24 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 322-355 PUL88_HCMVA HYPOTHETICAL PROTEIN UL88 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 309-337 PUL88_HSV6U HYPOTHETICAL PROTEIN 6R HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 150-187 238-272 PUL91_HSVSA HYPOTHETICAL GENE 30 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 23-53 PUL92_EBV HYPOTHETICAL PROTEIN BDLF4 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 106-144 PUL92_HSVSA HYPOTHETICAL GENE 31 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 123-157 PUL93_HCMVA PROTEIN UL93 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 387-420 PUL95_EBV HYPOTHETICAL PROTEIN BGLF3 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 111-145 PULB8_HCMVA HYPOTHETICAL PROTEIN UL118 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 102-130 152-181 PULC1_HCMVA HYPOTHETICAL PROTEIN UL121 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 129-165 PULC8_HCMVA HYPOTHETICAL PROTEIN UL128 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 64-96 PULC9_HCMVA HYPOTHETICAL PROTEIN UL129 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 66-99 PULD0_HCMVA HYPOTHETICAL PROTEIN UL130 HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  81-114 PUNG_EBV URACIL-DNA GLYCOSYLASE EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 159-189 PUNG_VACCC URACIL-DNA GLYCOSYLASE VACCINIA VIRUS (STRAIN COPENHAGEN)  82-117 PUNG_VACCV URACIL-DNA GLYCOSYLASE VACCINIA VIRUS (STRAIN WR)  82-117 PUNG_VARV URACIL-DNA GLYCOSYLASE VARIOLA VIRUS  82-117 PUS02_HCMVA HYPOTHETICAL PROTEIN HQLF2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 43-73 PUS07_HCMVA HYPOTHETICAL PROTEIN HXLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 153-190 PUS09_HCMVA HYPOTHETICAL PROTEIN HXLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 179-213 PUS10_HCMVA HYPOTHETICAL PROTEIN HXLF2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 137-170 PUS12_HCMVA HYPOTHETICAL PROTEIN HVLF6 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 29-67 113-142 PUS13_HCMVA HYPOTHETICAL PROTEIN HVLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 11-45 PUS15_HCMVA HYPOTHETICAL PROTEIN HVLF3 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 343-375 PUS16_HCMVA HYPOTHETICAL PROTEIN HVLF2 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 151-188 243-274 PUS18_HCMVA MEMBRANE PROTEIN HWLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 185-222 PUS22_HCMVA EARLY NUCLEAR PROTEIN HWLF1 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 270-299 PUS26_HCMVA HYPOTHETICAL PROTEIN HHLF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 132-164 PUS27_HCMVA G-PROTEIN COUPLED HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 247-285 RECEPTOR HOMOLOG US27 PUS29_HCMVA HYPOTHETICAL PROTEIN HHRF4 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 246-276 PUS30_HCMVA HYPOTHETICAL PROTEIN HHRF5 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 208-246 PV125_AMVLE 125 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN 263-292 PV13K_TRVPL 16 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN PLB) 24-62 PV143_NPVAC HELICASE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS 312-342 PV17K_BSMV 17 KD PROTEIN BARLEY STRIPE MOSAIC VIRUS (BSMV) 40-75 PV1A_CMVFN 1A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) (CMV) 674-709 PV270_ASFB7 L270 PROTEIN AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) (ASFV) 103-135 PV2A_BBMV 2A PROTEIN BROAD BEAN MOTTLE VIRUS 636-673 PV2A_CCMV 2A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS (CCMV) 325-363 639-673 762- 799 PV2A_CMVFN 2A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN FNY) (CMV) 208-243 292-320 PV2A_CMVQ 2A PROTEIN CUCUMBER MOSAIC VIRUS (STRAIN Q) (CMV) 205-240 PV2A_TAV 2A PROTEIN TOMATO ASPERMY VIRUS (TAV) 297-325 PV30K_TRVTC 29.1 KD PROTEIN TOBACCO RATTLE VIRUS (STRAIN TCM) 102-133 PV3A_BBMV 3A PROTEIN BROAD BEAN MOTTLE VIRUS 155-187 PV3A_BMV 3A PROTEIN BROME MOSAIC VIRUS (BMV) 159-189 PV3A_CCMV 3A PROTEIN COWPEA CHLOROTIC MOTTLE VIRUS (CCMV) 160-188 PV3A_IBVB 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)  5-43 PV3A_IBVM 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41) (IBV)  5-42 PV3A_IBVP3 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS  5-42 PV3A_IBVU5 3A PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN UK/183/66) (IBV)  5-42 PV51K_ACLSV 50.8 KD PROTEIN APPLE CHLOROTIC LEAF SPOT VIRUS (ACLSV)  70-106 PV51K_BWYVF 51 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) (BWYV) 366-398 PV51K_BWYVG 51 KD PROTEIN BEET WESTERN YELLOWS VIRUS (ISOLATE GB1) (BWYV) 366-398 PV56K_PLRV1 56 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV) 360-392 PV56K_PLRVW 56 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) (PLRV) 360-392 PV58K_BSMV 58 KD PROTEIN BARLEY STRIPE MOSAIC VIRUS (BSMV) 320-353 PV70K_PLRV1 69.7 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV) 220-257 PV70K_PLRVW 69.7 KD PROTEIN POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) (PLRV) 220-257 PV90K_AMVLE 90 KD PROTEIN ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN) 103-131 PVA04_VACCC PROTEIN A4 VACCINIA VIRUS (STRAIN COPENHAGEN) 217-251 PVA04_VACCV PROTEIN A4 VACCINIA VIRUS (STRAIN WR) 217-251 PVA04_VARV PROTEIN A4 VARIOLA VIRUS 207-241 PVA11_VACCC PROTEIN A11 VACCINIA VIRUS (STRAIN COPENHAGEN)  95-132 PVA11_VARV PROTEIN A11 VARIOLA VIRUS  96-133 PVA18_VACCC 56 KD ABORTIVE LATE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 390-421 PVA18_VACCV 56 KD ABORTIVE LATE PROTEIN VACCINIA VIRUS (STRAIN WR) 390-421 PVA18_VARV 56 KD ABORTIVE LATE PROTEIN VARIOLA VIRUS 390-421 PVA23_VACCC PROTEIN A23 VACCINIA VIRUS (STRAIN COPENHAGEN)  81-111 170-203 PVA23_VARV PROTEIN A23 VARIOLA VIRUS  81-111 170-203 PVA31_VACCC PROTEIN A31 VACCINIA VIRUS (STRAIN COPENHAGEN) 42-76 PVA31_VACCV PROTEIN A31 VACCINIA VIRUS (STRAIN WR) 42-76 PVA31_VARV PROTEIN A31 VARIOLA VIRUS 42-76 PVA32_VACCV PROTEIN A32 VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 48-79 PVA32_VARV PROTEIN A32 VARIOLA VIRUS 18-49 PVA40_VACCC PROTEIN A40 VACCINIA VIRUS (STRAIN COPENHAGEN)  4-37 PVA43_VACCC PROTEIN A43 VACCINIA VIRUS (STRAIN COPENHAGEN)  94-129 PVA43_VACCV PROTEIN A43 VACCINIA VIRUS (STRAIN WR)  94-129 PVA43_VARV PROTEIN A43 VARIOLA VIRUS  95-130 PVA51_VACCC PROTEIN A51 VACCINIA VIRUS (STRAIN COPENHAGEN) 109-143 PVA51_VACCV PROTEIN A51 VACCINIA VIRUS (STRAIN WR) 109-143 PVAL1_BCTV AL1 PROTEIN BEET CURLY TOP VIRUS (BCTV)  89-118 PVAL1_BGMV AL1 PROTEIN BEAN GOLDEN MOSAIC VIRUS  89-118 PVAL1_CLVK AL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)  88-117 PVAL1_CLVN AL1 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN)  88-117 PVAL1_PYMVV AL1 PROTEIN POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA)  89-118 PVAL1_TGMV AL1 PROTEIN TOMATO GOLDEN MOSAIC VIRUS (TGMV)  90-119 PVAL1_TYLCM AL1 PROTEIN TOMATO YELLOW LEAF CURL VIRUS (STRAIN MARMANDE) (TYLCV)  89-118 PVAL1_TYLCV AL1 PROTEIN TOMATO YELLOW LEAF CURL VIRUS (TYLCV)  87-116 PVAL3_BCTV AL3 PROTEIN BEET CURLY TOP VIRUS (BCTV)  82-115 PVAL3_CLYK AL3 PROTEIN CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)  77-113 PVAL3_CLVN AL3 PROTEIN CASSAVA LATENT VIRUS (STRAIN NIGERIAN)  77-113 PVAL3_TYLCM AL3 PROTEIN TOMATO YELLOW LEAF CURL VIRUS (STRAIN MARMANDE) (TYLCV)  78-116 PVAL3_TYLCV AL3 PROTEIN TOMATO YELLOW LEAF CURL VIRUS (TYLCV)  77-113 PVAT_CAMVC APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) (CAMV) 20-53  81-116 PVAT_CAMVD APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) (CAMV) 20-53 102-130 PVAT_CAMVE APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) (CAMV) 20-53  81-116 PVAT_CAMVN APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) (CAMV) 20-53  81-116 PVAT_CAMVP APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) (CAMV) 20-53  81-116 PVAT_CAMVS APHID TRANSMISSION PROTEIN CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) (CAMV) 20-53  83-116 PVB04_VACCC PROTEIN B4 VACCINIA VIRUS (STRAIN COPENHAGEN) 124-156 489-525 PVB04_VACCV PROTEIN B4 VACCINIA VIRUS (STRAIN WR) 124-156 489-525 PVB04_VARV PROTEIN B4 VARIOLA VIRUS 489-525 PVB16_COWPX INTERLEUKIN-1 BINDING PROTEIN COWPOX VIRUS (CPV)  89-126 PRECURSOR PVB16_VACCV INTERLEUKIN-1 BINDING PROTEIN VACCINIA VIRUS (STRAIN WR)  89-126 PRECURSOR PVB19_VACCC SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN COPENHAGEN) 213-244 PVB19_VACCD SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN DAIREN 1) 211-242 PVB19_VACCV SURFACE ANTIGEN S PRECURSOR VACCINIA VIRUS (STRAIN WR) 211-242 PVH19_VARV SURFACE ANTIGEN S PRECURSOR VARIOLA VIRUS 211-242 PVBR1_BGMV BRI PROTEIN BEAN GOLDEN MOSAIC VIRUS 166-198 PVC03_SFVKA G-PROTEIN COUPLED SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)  98-130 RECEPTOR HOMOLOG C3 PVC04_VACCC PROTEIN C4 VACCINIA VIRUS (STRAIN COPENHAGEN) 109-139 182-216 PVC04_VACCV PROTEIN C4 VACCINIA VIRUS (STRAIN WR) 109-139 183-215 PVC04_VARV PROTEIN C4 VARIOLA VIRUS 109-139 PVC06_VACCC PROTEIN C6 VACCINIA VIRUS (STRAIN COPENHAGEN) 36-67 PVC06_VACCV PROTEIN C6 VACCINIA VIRUS (STRAIN WR) 36-67 PVC06_VARV PROTEIN C6 VARIOLA VIRUS 36-67 PVC07_SFVKA HYPOTHETICAL PROTEIN C7 SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV) 60-97 PVC09_VACCC PROTEIN C9 VACCINIA VIRUS (STRAIN COPENHAGEN) 573-610 PVC09_VACCV PROTEIN C9 VACCINIA VIRUS (STRAIN WR) 573-610 PVC10_SFVKA HYPOTHETICAL PROTEIN C10 SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)  85-121 PVC10_VACCC PROTEIN C10 VACCINIA VIRUS (STRAIN COPENHAGEN) 121-158 PVC10_VACCV PROTEIN C10 VACCINIA VIRUS (STRAIN WR) 121-158 PVC10_VARV PROTEIN C10 VARIOLA VIRUS 121-158 PVC21_VACCC PROTEIN C21/B27 VACCINIA VIRUS (STRAIN COPENHAGEN)  3-34 PVCAP_EBV MAJOR CAPSID PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 148-183 200-230 PVCAP_HCMVA MAJOR CAPSID PROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 43-78 128-161 258- 286 PVCAP_HSV11 MAJOR CAPSID PROIEIN HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 19-49 PVCAP_HSV6U MAJOR CAPSID PROTEIN HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 124-161 666-696 841- 869 PVCAP_HSVEB MAJOR CAPSID PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 17-54 198-232 272- 301 PVCAP_HSVSA MAJOR CAPSID PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 144-179 196-226 734- 1062- 769 1096 PVCAP_PRVIS MAJOR CAPSID PROTEIN PSEUDORABIES VIRUS (STRAIN INDIANA S) (PRV) 189-221 260-289 PVCAP_VZVD MAJOR CAPSID PROTEIN VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 31-68 PVCOM_ADE02 MINOR CORE PROTEIN HUMAN ADENOVIRUS TYPE 2  86-115 PVCOM_ADE05 MINOR CORE PROTEIN HUMAN ADENOVIRUS TYPE 5  85-114 PVD03_VACCC PROTEIN D3 VACCINIA VIRUS (STRAIN COPENHAGEN) 12-50 146-182 PVD03_VACCV PROTEIN D3 VACCINIA VIRUS (STRAIN WR) 12-50 146-182 PVD03_VARV PROTEIN D3 VARIOLA VIRUS 12-50 146-182 PVD05_FOWP1 92.6 KD PROTEIN FOWLPOX VIRUS (STRAIN FP-1) 315-352 PVD05_VACCC PROTEIN D5 VACCINIA VIRUS (STRAIN COPENHAGEN) 320-348 PVD05_VACCV PROTEIN D5 VACCINIA VIRUS (STRAIN WR) 320-348 PVD05_VARV PROTEIN D5 VARIOLA VIRUS 320-348 PVD10_FOWP1 PROTEIN D10 FOWLPOX VIRUS (STRAIN FP-1) 114-143 PVE05_VACCD PROTEIN E5 VACCINIA VIRUS (STRAIN DAIREN 1) 31-60 PVE06_VACCC PROTEIN E6 VACCINIA VIRUS (STRAIN COPENHAGEN) 226-260 430-458 511- 540 PVE06_VACCV PROTEIN E6 VACCINIA VIRUS (STRAIN WR) 226-260 430-458 511- 540 PVE06_VARV PROTEIN E6 VARIOLA VIRUS 430-458 511-540 PVE10_VACCC PROTEIN E10 VACCINIA VIRUS (STRAIN COPENHAGEN)  3-41 PVE10_VACCV PROTEIN E10 VACCINIA VIRUS (STRAIN WR)  3-41 PVE10_VARV PROTEIN E10 VARIOLA VIRUS  3-41 PVE12_HPV16 PROBABLE E1 PROTEIN 2 HUMAN PAPILLOMAVIRUS TYPE 16 102-131 PVE18_NPVAC EARLY 18.5 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 45-77 PVE1_HPV05 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5  4-35 PVE1_HPV11 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 258-291 PVE1_HPV13 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 255-288 PVE1_HPV33 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 238-267 519-547 PVE1_HPV35 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 230-263 PVE1_HPV39 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 242-271 PVE1_HPV41 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 105-138 183-231 PVE1_HPV58 E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 238-267 PVE1_HPV5B E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B  6-35 PVE1_HPV6B E1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 258-291 PVE1_PAPVD E1 PROTEIN DEER PAPILLOMAVIRUS 163-201 PVE1_PCPV1 E1 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 257-290 PVE26_NPVAC EARLY 25.9 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 118-150 PVE2_HPV57 E2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 57 151-182 PVE2_RHPV1 E2 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1) 117-147 PVE41_NPVAC EARLY 40.9 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 14-52 PVE5A_HPV11 PROBABLE E5A PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 19-56 PVE5A_HPV6B PROBABLE E5A PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 19-56 PVE5A_HPV6C PROBABLE E5A PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6C 19-56 PVE5_HPV13 PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 13 19-56 PVE5_HPV5B PROBABLE E5 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B  89-118 PVE5_PCPV1 PROBABLE E5 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 21-58 PVE5_RHPV1 PROBABLE E5 PROTEIN RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1) 109-140 PVE6_HPV1A E6 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A  91-128 PVE7_HPV05 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5 55-90 PVE7_HPV08 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 55-90 PVE7_HPV11 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 11 47-83 PVE7_HPV16 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 16 47-83 PVE7_HPV1A E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 45-77 PVE7_HPV31 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 31 47-83 PVE7_HPV33 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 33 47-83 PVE7_HPV35 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 35 48-84 PVE7_HPV41 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 41 63-94 PVE7_HPV47 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 55-90 PVE7_HPV51 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51 61-94 PVE7_HPV58 E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 58 48-84 PVE7_HPV5B E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 55-90 PVE7_HPV6B E7 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 6B 47-83 PVE7_PAPVD E7 PROTEIN DEER PAPILLOMAVIRUS 48-86 PVE7_PAPVE E7 PROTEIN EUROPEAN ELK PAPILLOMAVIRUS (EEPV) 60-93 PVE94_NPVAC EARLY 94 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 123-157 650-678 PVEF_GVTN VIRAL ENHANCING FACTOR TRICHOPLUSIA NI GRANULOSIS VIRUS (TNGV) 154-182 PVENV_BEV ENVELOPE PROTEIN BERNE VIRUS (BEV) 16-51 87-117 PVENV_DHV11 ENVELOPE GLYCOPROTEIN DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO) 197-335 PRECURSOR PVENV_MCV1 MAJOR ENVELOPE PROTEIN MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1 (MCVI) 203-236 PVENV_MCV2 MAJOR ENVELOPE PROTEIN MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2 (MCVII) 203-236 PVENV_VACCC MAJOR ENVELOPE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 208-241 PVENV_VACCI MAJOR ENVELOPE PROTEIN VACCINIA VIRUS (STRAIN IHD-J) 208-241 PVENV_VACCP MAJOR ENVELOPE PROTEIN VACCINIA VIRUS (STRAIN L-IVP) 208-241 PVENV_VACCV MAJOR ENVELOPE PROTEIN VACCINIA VIRUS (STRAIN WR) 208-241 PVENV_VARV MAJOR ENVELOPE PROTEIN VARIOLA VIRUS 155-187 208-241 PVF03_VACCC PROTEIN F3 VACCINIA VIRUS (STRAIN COPENHAGEN)  2-40 61-93 PVF03_VACCV PROTEIN F3 VACCINIA VIRUS (STRAIN WR)  2-40 61-93 PVFP1_FOWPV PROTEIN FP1 FOWLPOX VIRUS 297-330 PVFP4_FOWPV PROTEIN FP4 FOWLPOX VIRUS 237-267 PVFP7_CAPVK PROTEIN F7 CAPRIPOXVIRUS (STRAIN KS-1)  89-118 PVFUS_VACCC 14 KD FUSION PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 28-61 PVFUS_VACCV 14 KD FUSION PROTEIN VACCINIA VIRUS (STRAIN WR) 28-61 PVFUS_VARV 14 KD FUSION PROTEIN VARIOLA VIRUS 28-61 PVG01_HSV11 HYPOTHETICAL GENE 1 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 317-346 PVG02_HSVEB HYPOTHETICAL GENE 2 PROTEIN EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 163-196 PVG02_VACCV ISATIN-BETA-THIOSEMI- VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)  92-120 CARBAZONE DEPENDENT PROTEIN PVG02_VARV ISATIN-BETA-THIOSEMI- VARIOLA VIRUS  92-120 CARBAZONE DEPENDENT PROTEIN PVG03_HSV11 HYPOTHETICAL GENE 3 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 108-136 PVG06_HSV11 HYPOTHETICAL GENE 6 MEMBRANE ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 54-83 PROTEIN PVG06_VACCC PROTEIN G6 VACCINIA VIRUS (STRAIN COPENHAGEN)  99-136 PVG06_VARV PROTEIN G6 VARIOLA VIRUS  99-136 PVG07_VACCC PROTEIN G7 VACCINIA VIRUS (STRAIN COPENHAGEN) 113-145 PVG07_VARV PROTEIN G7 VARIOLA VIRUS 113-145 PVG09_VACCC PROTEIN F1 VACCINIA VIRUS (STRAIN COPENHAGEN) 303-338 PVG09_VACCV PROTEIN F1 VACCINIA VIRUS (STRAIN WR) 266-301 PVG09_VARV PROTEIN F1 VARIOLA VIRUS 303-338 PVG11_HSV11 HYPOTHETICAL GENE 11 ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 150-183 ZINC-BINDING PROTEIN PVG12_HSV11 HYPOTHETICAL GENE 12 ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 206-243 ZINC-BINDING PROTEIN PVG12_HSVSA HYPOTHETICAL GENE 12 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  68-106 PVG1_SPV1R CAPSID PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 254-292 303-337 414- 452 PVG22_HSV11 HYPOTHETICAL GENE 22 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 300-337 647-678 PVG23_HSV11 HYPOTHETICAL GENE 23 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)  70-108 PVG26_HSV11 HYPOTHETICAL GENE 26 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)  94-125 PVG27_HSVSA HYPOTHETICAL GENE 27 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 36-74 PVG28_HSV11 HYPOTHETICAL GENE 28 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 491-521 PVG2R_AMEPV HYPOTHETICAL G2R PROTEIN AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV) 180-217 PVG2_SPV4 GENE 2 PROTEIN SPIROPLASMA VIRUS 4 (SPV4) 209-244 PVG35_HSV11 HYPOTHETICAL GENE 35 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 15-46 190-226 PVG36_HSVSA POSSIBLE TYROSINE-PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 151-185 KINASE PVG39_HSV11 HYPOTHETICAL GENE 39 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 543-577 648-682 PVG40_HSVSA HYPOTHETICAL GENE 40 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 187-216 PVG41_HSV11 HYPOTHETICAL GENE 41 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 11-45 202-233 PVG42_HSV11 HYPOTHETICAL GENE 42 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)  91-125 PVG43_HSV11 HYPOTHETICAL GENE 43 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 109-140 157-185 PVG46_HSV11 PROBABLE MAJOR GLYCOPROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 888-925 PVG48_HSVSA HYPOTHETICAL GENE 48 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 329-357 PVG50_HSVSA PROBABLE TRANSCRIPTION HERPESVIRUS SAIMIRI (STRAIN 11) 113-141 ACTIVATOR-EDRF1 PVG51_HSV11 HYPOTHETICAL GENE 51 ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV) 29-64  84-120 MEMBRANE PROTEIN PVG52_HSV11 HYPOTHETICAL GENE 52 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)  96-134 PVG55_HSV11 HYPOTHETICAL GENE 55 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 100-129 PVG56_HSV11 HYPOTHETICAL GENE 56 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 364-396 631-667 1091- 1126 PVG58_HSV11 HYPOTHETICAL GENE 58 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 342-375 480-508 PVG58_HSVSA GENE 58 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 25-60 195-233 PVG59_HSV11 HYPOTHETICAL GENE 59 ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)  82-118 MEMBRANE PROTEIN PVG61_HSV11 HYPOTHETICAL GENE 61 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)  76-109 PVG64_HSV11 HYPOTHETICAL GENE 64 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 55-89 363-401 420- 452 PVG65_HSV11 HYPOTHETICAL GENE 65 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 801-836 1146-1174 1290- 1326 PVG67_HSV11 HYPOTHETICAL GENE 67 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 1150-1185 PVG6_SPV1R GENE 6 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 60-89 PVG71_HSVSA HYPOTHETICAL GENE 71 PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11) 128-158 PVG72_HSV11 HYPOTHETICAL GENE 72 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 445-478 720-751 1158- 1252- 1189 1285 PVG75_HSV11 HYPOTHETICAL GENE 75 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 263-291 387-422 PVG76_HSV11 HYPOTHETICAL GENE 76 PROTEIN ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 187-221 PVG7_SPV1R GENE 7 PROTEIN SPIROPLASMA VIRUS SPV1-R8A2 B 18-46 PVGF1_IBVB F1 PROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV) 1719-1747 1856-1891 2108- 3601- 2146 3633 PVGH3_HCMVA GLYCOPROTEIN H301 PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  80-115 157-185 PVGL2_CVBF E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN F15) 1259-1294 PVGL2_CVBL9 E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN L9) 651-681 PVGL2_CVBLY E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN LY-138) 1259-1294 PVGL2_CVBM E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN MEBUS) 1259-1294 PVGL2_CVBQ E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN QUEBEC) 1259-1294 PVGL2_CVBV E2 GLYCOPROTEIN PRECURSOR BOVINE CORONAVIRUS (STRAIN VACCINE) 1259-1294 PVGL2_CVH22 E2 GLYCOPROTEIN PRECURSOR HUMAN CORONAVIRUS (STRAIN 229E) 1053-1088 PVGL2_CVM4 E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN WILD TYPE 4) (MHV-4) 1267-1304 PVGL2_CVMA5 E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN A59) 1215-1252 PVGL2_CVMJC E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN JHMV/VARIANT CL-2) 1267-1304 PVGL2_CVMJH E2 GLYCOPROTEIN PRECURSOR MURINE CORONAVIRUS MHV (STRAIN JHM) 1126-1163 PVGL2_CVPFS E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS 632-665 736-764 1328- 1363 PVGL2_CVPMI E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS 632-665 736-764 1328- 1363 PVGL2_CVPPR E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS 630-663 734-762 1326- 1361 PVGL2_CVPPU E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS 630-663 734-762 1326- 1361 PVGL2_CVPR8 E2 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS 512-540 1104-1139 PVGL2_CVPRM E2 GLYCOPROTEIN PRECURSOR PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) (PRCV) 408-441 512-540 1104- 1139 PVGL2_CVPRT E2 GLYCOPROTEIN PRECURSOR PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (STRAIN NEB7 630-663 734-762 1326- 1361 PVGL2_FIPV E2 GLYCOPROTEIN PRECURSOR FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) (FIPV) 635-668 739-767 1331- 1366 PVGL2_IBVB E2 GLYCOPROTEIN PRECURSOR AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV) 153-188 PVGLB_HCMVA GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 116-147 706-743 PVGLB_HCMVT GLYCOPROTEIN B PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 116-147 707-744 PVGLB_HSV6U GLYCOPROTEIN B HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)  72-110 PVGLB_HSVB1 GLYCOPROTEIN 1 PRECURSOR BOVINE HERPESVIRUS TYPE 1 254-288 PVGLB_HSVB2 GLYCOPROTEIN B-1 PRECURSOR BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) (BOVINE MAMMILLITIS VIRUS 745-774 PVGLB_HSVBC GLYCOPROTEIN 1 PRECURSOR BOVINE HERPES VIRUS TYPE 1 (STRAIN COOPER) 253-287 PVGLB_ILTV6 GLYCOPROTEIN B PRECURSOR INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 632) (ILIV) 442-472 PVGLB_ILTVS GLYCOPROTEIN B PRECURSOR INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN SA-2) (ILTV) 452-482 PVGLB_ILTVT GLYCOPROTEIN B PRECURSOR INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE V882) (ILTV) 452-482 PVGLB_MCMVS GLYCOPROTEIN B PRECURSOR MURINE CYTOMEGALOVIRUS (STRAIN SMITH) 135-163 738-776 PVGLC_HSV11 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17) 467-500 PVGLC_HSV1K GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS) 467-500 PVGLC_HSV2 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2) 435-465 PVGLC_HSV23 GLYCOPROTEIN C PRECURSOR HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333) 436-466 PVGLC_HSVBC GLYCOPROTEIN G111 PRECURSOR BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER) 475-507 PVGLC_VZVD GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 351-388 513-548 PVGLC_VZVS GLYCOPROTEIN GPV VARICELLA-ZOSTER VIRUS (STRAIN SCOTT) (VZV) 351-388 513-548 PVGLD_HSVEA GLYCOPROTEIN D PRECURSOR EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) (EHV-1) 340-370 PVGLD_HSVEB GLYCOPROTEIN D PRECURSOR EQUINE HERPESVIRUS TYPE 1 41-70 390-420 PVGLD_HSVEK GLYCOPROTEIN D PRECURSOR EQUINE HERPESVIRUS TYPE 1 41-70 390-420 PVGLE_HSVE4 GLYCOPROTEIN E EQUINE HERPESVIRUS TYPE 4  95-125 PVGLE_HSVEB GLYCOPROTEIN E PRECURSOR EQUINE HERPESVIRUS TYPE 1  63-100 390-420 PVGLE_HSVEL GLYCOPROTEIN E PRECURSOR EQUINE HERPESVIRUS TYPE 1  63-100 390-422 PVGLE_PRVR1 GLYCOPROTEIN G1 PRECURSOR PSEUDORABIES VIRUS (STRAIN RICE) (PRV) 332-369 PVGLF_BRSVA FUSION GLYCOPROTEIN BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) (BRS) 265-301 482-511 PRECURSOR PVGLF_BRSVC FUSION GLYCOPROTEIN BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN COPENHAGEN) (BRS) 484-513 PRECURSOR PVGLF_BRSVR FUSION GLYCOPROTEIN BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94) (BRS) 484-513 PRECURSOR PVGLF_CDVO FUSION GLYCOPROTEIN CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) (CDV) 562-596 PRECURSOR PVGLF_HRSV1 FUSION GLYCOPROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAIN 18537) 484-513 PRECURSOR PVGLF_HRSVA FUSION GLYCOPROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 484-513 PRECURSOR PVGLF_HRSVL FUSION GLYCOPROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAIN LONG) 484-513 PRECURSOR PVGLF_HRSVR FUSION GLYCOPROTEIN HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSS-2) 484-513 PRECURSOR PVGLF_MEASE FUSION GLYCOPROTEIN MEASLES VIRUS (STRAIN EDMONSTON) 224-256 451-484 PRECURSOR PVGLF_MEASI FUSION GLYCOPROTEIN MEASLES VIRUS (STRAIN IP-3-CA) 227-259 454-487 PRECURSOR PVGLF_MEASY FUSION GLYCOPROTEIN MEASLES VIRUS (STRAIN YAMAGATA-1) 224-256 451-484 PRECURSOR PVGLF_MUMP1 FUSION GLYCOPROTEIN MUMPS VIRUS (STRAIN SBL-1)  5-38 446-474 PRECURSOR PVGLF_MUMPM FUSION GLYCOPROTEIN MUMPS VIRUS (STRAIN MIYAHARA VACCINE) 446-474 PRECURSOR PVGLF_MUMPR FUSION GLYCOPROTEIN MUMPS VIRUS (STRAIN RW) 446-474 PRECURSOR PVGLF_MUMPS FUSION GLYCOPROTEIN MUMPS VIRUS (STRAIN SBL)  5-38 446-474 PRECURSOR PVGLF_NDVI FUSION GLYCOPROTEIN NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45) (NDV) 132-165 PRECURSOR PVGLF_NDVL FUSION GLYCOPROTEIN NEWCASTLE DISEASE VIRUS (STRAIN LAS/46) (NDV) 132-165 PRECURSOR PVGLF_PHODV FUSION GLYCOPROTEIN PHOCINE DISTEMPER VIRUS 531-565 PRECURSOR PVGLF_PHHC FUSION GLYCOPROTEIN HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39) 456-484 PRECURSOR PVGLF_P13B FUSION GLYCOPROTEIN BOVINE PARAINFLUENZA 3 VIRUS 453-481 PRECURSOR PVGLF_PI3H4 FUSION GLYCOPROTEIN HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885) 453-481 PRECURSOR PVGLF_RINDK FUSION GLYCOPROTEIN RINDERPEST VIRUS (STRAIN KABETE O) (RDV) 220-252 447-480 PRECURSOR PVGLF_RINDL FUSION GLYCOPROTEIN RINDERPEST VIRUS (STRAIN L) (RDV) 220-252 447-480 PRECURSOR PVGLF_SEND5 FUSION GLYCOPROTEIN SENDAI VIRUS (STRAIN Z/HOST MUTANTS) 460-488 PRECURSOR PVGLF_SENDF FUSION GLYCOPROTEIN SENDAI VIRUS (STRAIN FUSHIMI) 460-488 PRECURSOR PVGLF_SENDH FUSION GLYCOPROTEIN SENDAI VIRUS (STRAIN HARRIS) 460-488 PRECURSOR PVGLF_SENDJ FUSION GLYCOPROTEIN SENDAI VIRUS (STRAIN HVJ) 460-488 PRECURSOR PVGLF_SENDZ FUSION GLYCOPROTEIN SENDAI VIRUS (STRAIN Z) 460-488 PRECURSOR PVGLF_SV5 FUSION GLYCOPROTEIN SIMIAN VIRUS 5 (STRAIN W3) (SV5) 446-474 PRECURSOR PVGLF_TRTV FUSION GLYCOPROTEIN TURKEY RHINOTRACHEITIS VIRUS (TRTV) 452-481 PRECURSOR PVGLG_HSVEB GLYCOPROTEIN G PRECURSOR EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 327-364 PVGLG_SYNV SPIKE GLYCOPROTEIN PRECURSOR SONCHUS YELLOW NET VIRUS (SYNV) 524-553 PVGLG_VSVIG SPIKE GLYCOPROTEIN PRECURSOR VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN GLASGOW) 450-488 PVGLG_VSVJO SPIKE GLYCOPROTEIN PRECURSOR VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY 1 STRAIN OGDEN) 457-492 PVGLG_VSVO SPIKE GLYCOPROTEIN PRECURSOR VESICULAR STOMATITIS VIRUS (STRAIN ORSAY) 450-488 PVGLG_VSVSJ SPIKE GLYCOPROTEIN PRECURSOR VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN) 450-488 PVGLH_HCMVA GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 691-719 PVGLH_HCMVT GLYCOPROTEIN H PRECURSOR HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 690-718 PVGLH_HSV6G GLYCOPROTEIN H PRECURSOR HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 215-247 640-677 PVGLH_HSVE4 GLYCOPROTEIN H PRECURSOR EQUINE HERPESVIRUS TYPE 4 814-850 PVGLH_HSVEB GLYCOPROTEIN H PRECURSOR EQUINE HERPESVIRUS TYPE 1 807-843 PVGLI_HCMVA IMMEDIATE EARLY GLYCOPROTEIN HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 158-194 PRECURSOR PVGLM_BUNGE M POLYPROTEIN PRECURSOR BUNYAVIRUS GERMISTON 197-227 438-468  982- 1049- 1020 1084 PVGLM_BUNL7 M POLYPROTEIN PRECURSOR BUNYAVIRUS LA CROSSE (ISOLATE L74) 190-220 PVGLM_BUNSH M POLYPROTEIN PRECURSOR BUNYAVIRUS SNOWSHOE HARE 190-220 344-381 PVGLM_BUNYW M POLYPROTEIN PRECURSOR BUNYAMWERA VIRUS 193-228 434-472 823- 854 PVGLM_DUGBV M POLYPROTEIN PRECURSOR DUGBE VIRUS 244-273 637-672 886- 935- 1403- 915 965 1441 PVGLM_HANTB M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN B-1) (KOREAN HEMORRHAGIC FEVER VIRUS) 610-641 1081-1119 PVGLM_HANTH M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN HOJO) 188-222 612-643 1082- 1120 PVGLM_HANTL M POLYPROTEIN PRECURSOR HANTAAN VIRUS (STRAIN LEE) 188-222 612-643 1083- 1121 PVGLM_HANTV M POLYPROTEIN PRECURSOR HANTAAV VIRUS (STRAIN 76-118) 188-222 612-643 1083- 1121 PVGLM_INSV M POLYPROTEIN PRECURSOR IMPATIENS NECROTIC SPOT VIRUS (INSV) 269-307 1028-1062 PVGLM_PHV M POLYPROTEIN PRECURSOR PROSPECT HILL VIRUS (PHV) 616-649 1088-1121 PVGLM_PTPV M POLYPROTEIN PRECURSOR PUNTA TORO PHLEBOVIRUS 949-982 1275-1309 PVGLM_PUUMH M POLYPROTEIN PRECURSOR PUUMALA VIRUS (STRAIN HALLNAS B1) 620-653 1092-1125 PVGLM_PUUMS M POLYPROTEIN PRECURSOR PUUMALA VIRUS (STRAIN SOTKAMO) 620-653 1092-1125 PVGLM_RVFV M POLYPROTEIN PRECURSOR RIFT VALLEY FEVER VIRUS (RVFV) 620-650 830-863 PVGLM_RVFVZ M POLYPROTEIN PRECURSOR RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) (RVFV) 620-650 830-863 1156- 1185 PVGLM_SEOU8 M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN 80-39) 610-641 1081-1119 PVGLM_SEOUR M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN R22) 605-641 1082-1120 PVGLM_SEOUS M POLYPROTEIN PRECURSOR SEOUL VIRUS (STRAIN SR-11) (SAPPORO RAT VIRUS) 610-641 1081-1119 PVGLM_UUK M POLYPROTEIN PRECURSOR UUKUNIEMI VIRUS (UUK) 431-468 966-995 PVGLP_BEV PEPLOMER GLYCOPROTEIN BERNE VIRUS (BEV) 1491-1526 PRECURSOR PVGLY_JUNIN GLYCOPROTEIN POLYPROTEIN JUNIN ARENAVIRUS 12-45 PRECURSOR PVGLY_LASSG GLYCOPROTEIN POLYPROTEIN LASSA VIRUS (STRAIN GA391) 237-265 PRECURSOR PVGLY_LASSJ GLYCOPROTEIN POLYPROTEIN LASSA VIRUS (STRAIN JOSIAH) 238-266 PRECURSOR PVGLY_PIARV GLYCOPROTEIN POLYPROTEIN PICHINDE ARENAVIRUS 12-50 PRECURSOR PVGLY_TACV GLYCOPROTEIN POLYPROTEIN TACARIBE VIRUS 12-50 PRECURSOR PVGLY_TACV5 GLYCOPROTEIN POLYPROTEIN TACARIBE VIRUS (STRAIN V5) 12-50  89-124 PRECURSOR PVGLY_TACV7 GLYCOPROTEIN POLYPROTEIN TACARIBE VIRUS (STRAIN V7) 12-50  89-124 PRECURSOR PVGLY_TACVT GLYCOPROTEIN POLYPROTEIN TACARIBE VIRUS (STRAIN TRVL 11598) 12-50  89-124 PRECURSOR PVGNB_CPMV GENOME POLYPROTEIN B COWPEA MOSAIC VIRUS (CPMV) 1527-1555 PVGNM_CPMV GENOME POLYPROTEIN M COWPEA MOSAIC VIRUS (CPMV) 209-242 741-771 PVGNM_CPSMV GENOME POLYPROTEIN M COWPEA SEVERE MOSAIC VIRUS (STRAIN DG) 50-86 479-515 PVGNM_RCMV GENOME POLYPROTEIN M RED CLOVER MOTTLE VIRUS (RCMV) 766-799 PVGP2_EBV PROBABLE MEMBRANE EPSTEIN-BARR VIURS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)  78-111 ANTIGEN GP220 PVGP3_EBV ENVELOPE GLYCOPROTEIN GP340 EPSTEIN-BARR VIURS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)  78-111 PVH02_VACCC LATE PROTEIN H2 VACCINIA VIRUS (STRAIN COPENHAGEN) 54-89 PVH02_VACCV LATE PROTEIN H2 VACCINIA VIRUS (STRAIN WR) 54-89 PVH02_VARV LATE PROTEIN H2 VARIOLA VIRUS PHV05_VACCC PROTEIN H5 VACCINIA VIRUS (STRAIN COPENHAGEN) 115-149 PVH05_VACCV PROTEIN H5 VACCINIA VIRUS (STRAIN WR) 115-149 PVH05_VARV PROTEIN H5 VARIOLA VIRUS 133-167 PVHEL_LSV PROBABLE HELICASE LILY SYMPTOMLESS VIRUS (LSV) 107-143 PV101_VACCC PROTEIN 11 VACCINIA VIRUS (STRAIN COPENHAGEN) 54-82 PV101_VARV PROTEIN 11 VARIOLA VIRUS 54-82 PV106_VACCV PROTEIN 16 VACCINIA VIRUS (STRAIN WR) 55-88 PV106_VARV PROTEIN 16 VARIOLA VIRUS 55-88 PV108_VACCC PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN COPENHAGEN) 591-624 PV108-VACCV PUTATIVE RNA HELICASE 18 VACCINIA VIRUS (STRAIN WR) 591-624 PV108-VARV PUTATIVE RNA HELICASE 18 VARIOLA VIRUS 591-624 PVIE1_HCMVA 55 KD IMMEDIATE-EARLY HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 243-271 PROTEIN 1 PVIE1_HCMVT 55 KD IMMEDIATE-EARLY HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE) 243-271 PROTEIN 1 PVIF_BIV06 VIRION INFECTIVITY FACTOR BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) (BIV) 42-78 PVIF_BIV27 VIRION INFECTIVITY FACTOR BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV) 42-78 PVIF_SIVGB VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GBI) 46-78 PVIF_SIVMK VIRION INFECTIVITY FACTOR SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) (SIV-MAC)  82-111 PVIMP_EBV PROBABLE INTEGRAL MEMBRANE EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIURS 4) 125-159 PROTEIN BBRF3 PVIMP_HCMVA PROBABLE INTEGRAL MEMBRANE HUMAN CYTOMEGALOVIRUS (STRAIN AD169)  68-100 PROTEIN PVIMP_HSV11 PROBABLE INTEGRAL MEMBRANE HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)  83-114 136-171 250- PROTEIN 282 PVIMP_HSVEB PROBABLE INTEGRAL MEMBRANE EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 24-56  93-127 145- 332- PROTEIN 180 361 PVIMP_HSVSA INTEGRAL MEMBRANE PROTEIN HERPESVIRUS SAIMIRI (STRAIN 11)  76-111 PVINT_SSV1 PROBABLE INTEGRASE SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 253-291 PVJ05_VACCC PROTEIN J5 VACCINIA VIRUS (STRAIN COPENHAGEN) 54-85 PVJ05_VACCV PROTEIN J5 VACCINIA VIRUS (STRAIN WR) 54-85 PVJ05_VARV PROTEIN J5 VARIOLA VIRUS 54-85 PVK04_VACCC PROTEIN K4 VACCINIA VIRUS (STRAIN COPENHAGEN)  87-120 PVK04_VACCV PROTEIN K4 VACCINIA VIRUS (STRAIN WR)  87-120 PVK05_VACCC PROTEIN K5 VACCINIA VIRUS (STRAIN COPENHAGEN)  74-103 PVK05_VACCV PROTEIN K5 VACCINIA VIRUS (STRAIN WR)  87-116 PVL02_VACCC PROTEIN L2 VACCINIA VIRUS (STRAIN COPENHAGEN) 39-76 PVL02_VACCV PROTEIN L2 VACCINIA VIRUS (STRAIN WR) 39-76 PVL02_VARV PROTEIN L2 VARIOLA VIRUS 39-76 PVL03_VACCC PROTEIN L3 VACCINIA VIRUS (STRAIN COPENHAGEN) 292-322 PVL03_VACCV PROTEIN L3 VACCINIA VIRUS (STRAIN WR) 292-322 PVL03_VARV PROTEIN L3 VARIOLA VIRUS 291-321 PLV05_VACCV PROTEIN L5 VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 16-45 PVL05_VARV PROTEIN L5 VARIOLA VIRUS 16-45 PVL1_HPV5B PROBABLE L1 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 373-406 PVL2_CRPVK PROBABLE L2 PROTEIN COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN KANSAS) (CRPV) 26-57 PVL2_HPV05 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5 27-57 PVL2_HPV08 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 8 27-57 PVL2_HPV1A PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 1A 26-56 PVL2_HPV39 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 39 29-59 285-313 PVL2_HPV42 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 42 344-379 PVL2_HPV47 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 47 26-57 PVL2_HPV51 PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 51 29-59 PVL2_HPV5B PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE 5B 27-57 PVL2_HPVME PROBABLE L2 PROTEIN HUMAN PAPILLOMAVIRUS TYPE ME180 29-59 PVL2_PCPV1 PROBABLE L2 PROTEIN PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1 29-59 PVL96_IRV1 L96 PROTEIN TIPULA IRIDESCENT VIRUS (TIV) (INSECT IRIDESCENT VIRUS TYPE 1) 144-177 686-718 PVM1_REOVD MINOR VIRION STRUCTURAL REOVIRUS (TYPE 3/STRAIN DEARING) 280-318 324-361 PROTEIN MU-2 PVM1_REOVL MINOR VIRION STRUCTURAL REOVIRUS (TYPE 1/STRAIN LANG) 280-318 PROTEIN MU-2 PVM21_REOVD MAJOR VIRION STRUCTURAL REOVIRUS (TYPE 3/STRAIN DEARING) 168-199 PROTEIN MU-1/MU-1C PVM22_REOVD MAJOR VIRION STRUCTURAL REOVIRUS (TYPE 3/STRAIN DEARING) 168-199 PROTEIN MU-1/MU-1C PVM2_REOVJ MAJOR VIRION STRUCTURAL REOVIRUS (TYPE 2/STRAIN D5/JONES) 168-199 PROTEIN MU-1/MU-1C PVM2_REOVL MAJOR VIRION STRUCTURAL REOVIRUS (TYPE 1/STRAIN LANG) 168-199 PROTEIN MU-1/MU-1C PVM3_REOVD MAJOR NONSTRUCTURAL REOVIRUS (TYPE 3/STRAIN DEARING) 333-364 PROTEIN MU-NS PVMAT_SV5 MATRIX PROTEIN SIMIAN VIRUS 5 (STRAIN W3) (SV5) 308-342 PVMAT_TRTV MATRIX PROTEIN TURKEY RHINOTRACHEITIS VIRUS (TRTV) 122-150 PVMEI_CVBM E1 GLYCOPROTEIN BOVINE CORONAVIRUS (STRAIN MEBUS)  64-102 PVMEI_CVHOC E1 GLYCOPROTEIN HUMAN CORONAVIRUS (STRAIN OC43)  64-102 PVMEI_CVMA5 E1 GLYCOPROTEIN MURINE CORONAVIRUS MHV (STRAIN A59)  65-103 PVMEI_CVMJH E1 GLYCOPROTEIN MURINE CORONAVIRUS MHV (STRAIN JHM)  65-103 PVMEI_CVTKE E1 GLYCOPROTEIN TURKEY ENTERIC CORONAVIRUS (TCV)  64-102 PVMEI_IBVB E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)  73-101 PVMEI_IBVB2 E1 GLYCOPROTEIN AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE M42) (IBV)  73-101 PVMEM_EBV PROBABLE MEMBRANE PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 178-213 PVMP_CERV MOVEMENT PROTEIN CARNATION ETCHED RING VIRUS (CERV)  93-126 PVMP_SOCMV MOVEMENT PROTEIN SOYBEAN CHLOROTIC MOTTLE VIRUS 66-98 273-303 PYMSA_HPBDB MAJOR SURFACE ANTIGEN DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK ISOLATE S5) (DHBV) 201-238 269-302 PRECURSOR PVMSA_HPBDC MAJOR SURFACE ANTIGEN DUCK HEPATITIS B VIRUS (STRAIN CHINA) (DHBV) 194-227 268-301 PRECURSOR PVMSA_HPBDU MAJOR SURFACE ANTIGEN DUCK HEPATITIS B VIRUS (DHBV) 157-190 231-264 PRECURSOR PVMSA_HPBDW MAJOR SURFACE ANTIGEN DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK ISOLATE S31) (DHBV) 194-228 269-302 PRECURSOR PVMSA_HPBGS MAJOR SURFACE ANTIGEN GROUND SQUIRREL HEPATITIS VIRUS (GSHV) 209-243 271-307 PRECURSOR PVMSA_HPBHE MAJOR SURFACE ANTIGEN HERON HEPATITIS B VIRUS 159-195 236-269 PRECURSOR PVMSA_HPBV0 MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS 70-98 PVMSA_HPBV2 MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW2) 244-272 PRECURSOR PVMSA_HPBV4 MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADR4) 244-272 PRECURSOR PVMSA_HPBV9 MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 991) 244-272 PRECURSOR PVMSA_HPBVA MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (STRAIN ALPHA1) 233-261 PRECURSOR PVMSA_HPBVD MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE AD) 70-98 PVMSA_HPBVI MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN INDONESIA/PIDW420) 233-261 PRECURSOR PVMSA_HPBVJ MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ABW/STRAIN JAPAN/PJDW233) 233-261 PRECURSOR PVMSA_HPBVL MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (STRAIN LSH/CHIMPANZEE ISOLATE) 233-261 PRECURSOR PVMSA_HPBVN MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN NC-1) 70-98 PVMSA_HPBVO MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN OKINAWA/PODW282) 233-161 PRECURSOR PVMSA_HPBVP MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN PHILIPPINO/PFDW294) 244-272 PRECURSOR PVMSA_HPBVR MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADR) 244-272 PRECURSOR PVMSA_HPBVS MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE AR) 70-98 PVMSA_HPBVW MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADW) 233-261 PRECURSOR PVMSA_HPBVY MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE AYW) 233-261 PRECURSOR PVMSA_HPBVZ MAJOR SURFACE ANTIGEN HEPATITIS B VIRUS (SUBTYPE ADYW) 233-261 PRECURSOR PVMSA_WHV1 MAJOR SURFACE ANTIGEN WOODCHUCK HEPATITIS VIRUS 1 207-241 269-305 PRECURSOR PVMSA_WHV59 MAJOR SURFACE ANTIGEN WOODCHUCK HEPATITIS VIRUS 59 212-246 274-310 PRECURSOR PVMSA_WHV7 MAJOR SURFACE ANTIGEN WOODCHUCK HEPATITIS VIRUS 7 212-246 274-310 PRECURSOR PVMSA_WHV8 MAJOR SURFACE ANTIGEN WOODCHUCK HEPATITIS VIRUS 8 212-246 274-310 PRECURSOR PVMSA_WHV81 PROBABLE MAJOR SURFACE WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE) 212-246 274-305 ANTIGEN PRECURSOR PVMSA_WHVW6 MAJOR SURFACE ANTIGEN WOODCHUCK HEPATITIS VIRUS W64 (ISOLATE PWS23) 125-161 PRECURSOR 1 PVMT2_IAZII MATRIX (M2) PROTEIN INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 10-42 PVMT8_MYXVL M-T8 PROTEIN MYXOMA VIRUS (STRAIN LAUSANNE)  5-34 141-170 PVMT9_MYXVL MT-9 PROTEIN MYXOMA VIRUS (STRAIN LAUSANNE) 246-282 PVN02_VACCC PROTEIN N2 VACCINIA VIRUS (STRAIN COPENHAGEN) 31-68 PVN02_VACCV PROTEIN N2 VACCINIA VIRUS (STRAIN WR) 31-68 PVN02_VARV PROTEIN N2 VARIOLA VIRUS 31-68 PVN34_ROTPC NONSTRUCTURAL PROTEIN NS34 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 336-366 PVNCA_AAV2 DNA REPLICATION PROTEIN ADENO-ASSOCIATED VIRUS 2 (AAV2) 163-196 365-401 PVNCS_PAVBO PROBABLE NONCAPSID PROTEIN BOVINE PARVOVIRUS (BPV) 180-217 346-377 439- NS1 471 PVNS1_AHSV4 NONSTRUCTURAL PROTEIN NS1 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCINE) 351-380 PVNS1_IAALA NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77) 114-144 PVNS1_IAANN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60) 114-144 PVNS1_IACHI NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHILE/1/83) 114-144 PVNS1_IACKG NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49) 107-144 PVNS1_IACKJ NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24) 104-141 PVNS1_IADA2 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76) 107-144 PVNS1_IADE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56) 104-141 PVNS1_IADU3 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63) 104-141 PVNS1_IAFOM NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47) 114-144 PVNS1_IAFOW NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50) 114-144 PVNS1_IAFPR NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK/34) 107-144 PVNS1_IALE1 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57) 114-144 PVNS1_IALEN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1) 114-144 PVNS1_IAMA6 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76) 107-144 PVNS1_IAMAN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78) 107-144 PVNS1_IAMAO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78) 107-144 PVNS1_IAMYN NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/MYNAH/HANEDA-THAI/76) 104-141 PVNS1_IAP10 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79) 107-144 PVNS1_IAP11 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79) 107-144 PVNS1_IAP12 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/268/78) 107-144 PVNS1_IAP13 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/358/79) 107-144 PVNS1_IAPUE NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34) 114-144 PVNS1_IATKB NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM-GLILIT/1492-B/82) 107-144 PVNS1_IATKC NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63) 107-144 PVNS1_IATRS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61) 104-141 PVNS1_IATRT NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72) 107-144 PVNS1_IAUDO NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/UDORN/307/72) 114-144 PVNS1_IAUSS NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/USSR/90/77) 114-144 PVNS1_IAZ11 NONSTRUCTURAL PROTEIN NS1 INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30) 107-144 PVNS1_INBPA NONSTRUCTURAL PROTEIN NS1 INFLUENZA B VIRUS (STRAIN B/PA/79) 266-295 PVNS1_INCAA NONSTRUCTURAL PROTEIN NS1 INFLUENZA C VIRUS (STRAIN C/ANN ARBOR/1/50) 222-255 PVNS1_INCCA NONSTRUCTURAL PROTEIN NS1 INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78) 222-255 PVNS2_HRSVI NONSTRUCTURAL PROTEIN 2 HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAIN 18537) 20-49 PVNS2_HRSVA NONSTRUCTURAL PROTEIN 2 HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2) 20-49 PVNS2_INBLE NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/LEE/40) 48-77 PVNS2_INBYA NONSTRUCTURAL PROTEIN NS2 INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73) 48-77 PVNS4_CVMS NONSTRUCTURAL PROTEIN 4 MURINE CORONAVIRUS MHV (STRAIN S) 17-45 PVNS4_CVPFS NONSTRUCTURAL PROTEIN 4 PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (STRAIN FS77  4-34 PVNS4_CVPPU NONSTRUCTURAL PROTEIN 4 PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (STRAIN PUR  4-39 PVNS4_CVPRM NONSTRUCTURAL PROTEIN 4 PORCINE RESPIRATORY CORONAVIRUS  4-39 PVNST_CVMA5 30 KD NONSTRUCTURAL PROTEIN MURINE CORONAVIRUS MHV (STRAIN A59) 45-80 PVNST_CVMJH 30 KD NONSTRUCTURAL PROTEIN MURINE CORONAVIRUS MHV (STRAIN JHM) 49-84 PVNST_INCGL NONSTRUCTURAL PROTEINS NS1-NS2 INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54) 222-255 PVNST_INCJH NONSTRUCTURAL PROTEINS NS1-NS2 INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66) 222-255 PVNST_INCMI NONSTRUCTURAL PROTEINS NS1-NS2 INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80) 222-255 PVNST_INCYA NONSTRUCTURAL PROTEINS NS1-NS2 INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81) 222-255 PVNUA_PRVKA PROBABLE NUCLEAR ANTIGEN PSEUDORABIES VIRUS (STRAIN KAPLAN) (PRV) 756-784 PVNUC_DHVH NUCLEOPROTEIN DHORI VIRUS (STRAIN INDIAN/1313/64) (DHO) 297-331 441-470 PVNUC_IACKP NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1/83) 354-388 PVNUC_IAHLO NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE /LONDON/1416/73) 354-388 PVNUC_IAHPR NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE /PRAGUE/1/56) 354-388 PVNUC_IAHTE NUCLEOPROTEIN INFLUENZA A VIRUS (STRAIN A/EQUINE /TENNESSEE/5/86) 354-388 PVNUC_MABVM NUCLEOPROTEIN MARBURG VIRUS (STRAIN MUSOKE) 16-46 PVNUC_MABVP NUCLEOPROTEIN MARBURG VIRUS (STRAIN POPP) 16-46 PVO01_VACCC PROTEIN O1 VACCINIA VIRUS (STRAIN COPENHAGEN) 511-539 550-581 PVO01_VARV PROTEIN O1 VARIOLA VIRUS 511-539 PVOR1_NMV 186 KD PROTEIN NARCISSUS MOSAIC VIRUS (NMV) 121-150 641-671 PVOR1_PVMR 223 KD PROTEIN POTATO VIRUS M (STRAIN RUSSIAN) (PVM) 1667-1703 PVOR1_SMYEA 150 KD PROTEIN STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS (SMYEAV) 121-153 PVP03_HSVSA PROBABLE MEMBRANE ANTIGEN 3 HERPESVIRUS SAIMIRI (STRAIN 11) 462-493 PVP10_NPVAC P10 PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)  4-38 PVP10_NPVOP P10 PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)  4-38 PVP10_RBSDV PROTEIN S10 RICE BLACK STREAKED DWARF VIRUS (RBSDV) 260-291 PVP19_HSVEB CAPSID ASSEMBLY AND DNA EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 239-268 287-325 MATURATION PROTEIN PVP23_HCMVA PROBABLE CAPSID PROTEIN VP23 HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 141-172 PVP23_HSV6U PROBABLE CAPSID PROTEIN VP23 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102) 46-79 206-238 PVP23_HSVEB PROBABLE CAPSID PROTEIN VP23 EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) (EHV-1) 18-48 PVP23_VZVD PROBABLE CAPSID PROTEIN VP23 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV) 224-253 PVP2_AHSV4 OUTER CAPSID PROTEIN VP2 AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCINE) 408-441 PVP2_BTV10 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 649-683 PVP2_BTV11 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 558-586 649-683 PVP2_BTV17 OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYFE 17/ISOLATE USA) 391-424 564-593 PVP2_BTV1A OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 654-688 PVP2_BTV1S OUTER CAPSID PROTEIN VP2 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 654-688 PVP2_EHDV1 OUTER CAPSID PROTEIN VP2 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) (EHDV-1) 878-915 PVP2_ROTBR RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN RF) 334-367 522-557 PVP2_ROTBU RNA-BINDING PROTEIN VP2 BOVINE ROTAVIRUS (STRAIN UK) 334-367 523-558 PVP2_ROTHW RNA-BINDING PROTEIN VP2 HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 342-377 532-567 PVP2_ROTPC RNA-BINDING PROTEIN VP2 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 514-549 589-617 811- 841 PVP2_ROTS1 RNA-BINDING PROTEIN VP2 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 335-368 523-558 PVP35_VACCC IMMUNODOMINANT ENVELOPE VACCINIA VIRUS (STRAIN COPENHAGEN) 278-311 PROTEIN P35 PVP35_VACCV IMMUNODOMINANT ENVELOPE VACCINIA VIRUS (STRAIN WR) 278-311 PROTEIN P35 PVP35_VARV IMMUNODOMINANT ENVELOPE VARIOLA VIRUS 279-312 PROTEIN P35 PVP39_NPVOP MAJOR CAPSID PROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV) 107-141 PVP3_EHDV1 VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) (EHDV-1) 383-412 734-770 PVP3_EHDVA VP3 CORE PROTEIN EPIZOOTIC HEMORRHAGIC DISEASE VIRUS 383-412 734-770 PVP3_RDV MAJOR 114 KD STRUCTURAL RICE DWARF VIRUS (RDV) 297-330 PROTEIN PVP3_ROTSI INNER CORE PROTEIN VP3 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 652-688 PVP40_EBV CAPSID PROTEIN P40 EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 429-457 PVP40_HSVSA CAPSID PROTEIN P40 HERPESVIRUS SAIMIRI (STRAIN 11) 119-152 PVP40_ILTVT CAPSID PROTEIN P40 INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE V882) (ILTV)  84-119 PVP40_VZVD CAPSID PROTEIN P40 VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV 485-516 PVP47_NPVAC VIRAL TRANSCRIPTION AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 239-270 REGULATOR P47 PVP4A_VACCC MAJOR CORE PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 553-591 P4A PRECURSOR PVP4A_VACCV MAJOR CORE PROTEIN VACCINIA VIRUS (STRAIN WR) 553-591 P4A PRECURSOR PVP4A_VARV MAJOR CORE PROTEIN VARIOLA VIRUS 554-592 P4A PRECURSOR PVP4A_ROTGI OUTER CAPSID PROTEIN VP4 ROTAVIRUS (GROUP B/STRAIN IDIR)  93-122 468-499 PVP4_WTV NONSTRUCTURAL PROTEIN PNS4 WOUND TUMOR VIRUS (WTV) 278-308 624-659 PVP5_BRD OUTER CAPSID PROTEIN VP5 BROADHAVEN VIRUS (BRD)  96-133 295-326 PVP5_BTV1A OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 295-324 PVP5_BTV1S OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 1/SOUTH AFRICA) 295-324 PVP5_BTV2A OUTER CAPSID PROTEIN VP5 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 295-324 PVP5_EHDV1 OUTER CAPSID PROTEIN VP5 EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) (EHDV-1) 290-325 PVP5_WTV OUTER COAT PROTEIN P5 WOUND TUMOR VIRUS (WTV) 691-719 PVP61_BTV10 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 159-187 PVP62_BTV10 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 155-183 210-245 PVP62_MRDV PROBABLE NONSTRUCTURAL MAIZE ROUGH DWARF VIRUS (MRDV) 25-61 222-257 36.3 KD PROTEIN PVP64_NPVOP MAJOR ENVELOPE GLYCOPROTEIN ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV) 285-313 PRECURSOR PVP67_NPVAC MAJOR ENVELOPE GLYCOPROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 281-316 PRECURSOR PVP67_NPVGM MAJOR ENVELOPE GLYCOPROTEIN GALLERIA MELLONELLA NUCLEAR POLYHEDROSIS VIRUS (GMNPV) 198-233 PVP6_BTV11 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 155-183 PVP6_BTV17 VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 155-183 PVP6_BTV1S VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 159-187 PVP6_BTV2A VP6 PROTEIN BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 131-159 PVP6_WTV STRUCTURAL PROTEIN P6 WOUND TUMOR VIRUS (WTV) 180-209 PVP6_WTVNJ STRUCTURAL PROTEIN P6 WOUND TUMOR VIRUS (STRAIN NJ) (WTV) 180-209 PVP79_NPVAC 79 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 405-442 PVP7_WTV NONSTRUCTURAL PROTEIN PNS7 WOUND TUMOR VIRUS (WTV) 454-490 PVP87_NPVOP CAPSID PROTEIN P87 ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)  77-112 PVP8_BTV10 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA) 104-139 PVP8_BTV11 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA) 104-139 PVP8_BTV13 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA) 104-139 PVP8_BTV17 NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA) 104-139 PVP8_BTV1A NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA) 104-139 PVP8_HTV1S NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA) 104-139 PVP8_BTV2A NONSTRUCTURAL PROTEIN P8 BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA) 104-139 PVP8_RDV OUTER CAPSID PROTEIN P8 RICE DWARF VIRUS (RDV) 374-412 PVP8_WTV OUTER CAPSID PROTEIN P8 WOUND TUMOR VIRUS (WTV) 164-195 379-412 PVPHE_NPVAC 29 KD POLYHEDRAL ENVELOPE AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 145-173 PROTEIN PVPHE_NPVOP 32 KD POLYHEDRAL ENVELOPE ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV) 122-151 PROTEIN PVPR_HV1A2 VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE) (HIV-1) 37-74 PVPR_HV2BE VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) (HIV-2) 41-73 PVPR_HV2CA VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) (HIV-2) 41-73 PVPR_HV2D1 VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) (HIV-2) 41-73 PVPR_HV2D2 VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) (HIV-2) 41-73 PVPR_HV2NZ VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) (HIV-2) 41-73 PVPR_HV2RO VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) (HIV-2) 41-73 PVPR_HV2SB VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) (HIV-2) 41-73 PVPR_HV2ST VPR PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 2(ISOLATE ST) (HIV-2) 40-72 PVPR_SIVCZ VPR PROTEIN CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV) 37-74 PVPR_SIVMI VPR PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) (SIV-MAC) 37-69 PVPR_SIVMK VPR PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) (SIV-MAC) 37-69 PVPR_SIVML VPR PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE) (SIV-MAC) 37-69 PVPR_SIVS4 VPR PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) (SOOTY MANGA 37-69 PVPR_SIVSP VPR PROTEIN SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) (SOOTY MANGABE 37-69 PVPU_HV1B1 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE,HXB3 ISOLATE)  3-33 PVPU_HV1B8 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE) (HIV-I)  4-33 PVPU_HV1BN VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE) (HIV-1)  3-34 PVPU_HV1BR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) (HIV-1)  3-33 PVPU_HV1H2 VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) (HIV-1)  4-33 PVPU_HV1JR VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) (HIV-1)  3-34 PVPU_HV1PV VPU PROTEIN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) (HIV-1)  3-33 PVPU_JSRV VPU PROTEIN SHEEP PULMONARY ADENOMATOSIS VIRUS 116-154 PVPX_LDV VPX PROTEIN LACTATE DEHYDROGENASE-ELEVATING VIRUS (LDV) 25-55 PVPY_BIV2 ORF-Y PROTEIN BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV) 35-71 PVRNA_BSMV ALPHA-A PROTEIN BARLEY STRIPE MOSAIC VIRUS (BSMV) 290-319 676-705 PVS05_ROTHI NONSTRUCTURAL PROTEIN NCVP2 HUMAN ROTAVIRUS (STRAIN IGV-80-3) 198-230 PVS05_ROTPC NONSTRUCTURAL PROTEIN NS53 PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 88-119 358-392 PVS05_ROTSI NONSTRUCTURAL PROTEIN NCVP2 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 315-347 PVS06_ROTBR VP6 PROTEIN BOVINE ROTAVIRUS (STRAIN RF) 55-92 PVS06_ROTBS VP6 PROTEIN BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU) 64-92 312-340 PVS06_ROTBU VP6 PROTEIN BOVINE ROTAVIRUS (STRAIN UK) 55-92 PVS06_ROTEF VP6 PROTEIN EQUINE ROTAVIRUS (STRAIN FI-14) 55-92 PVS06_ROTEH VP6 PROTEIN EQUINE ROTAVIRUS (STRAIN H-2) 55-92 PVS06_ROTH1 VP6 PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076) 55-92 PVS06_ROTHC VP6 PROTEIN HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL) 64-92 312-340 PVS06_ROTHS VP6 PROTEIN HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2) 55-92 PVS06_ROTHW VP6 PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 55-92 313-349 PVS06_ROTPC VP6 PROTEIN PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN) 64-92 PVS06_ROTPG VP6 PROTEIN PORCINE ROTAVIRUS (STRAIN GOTTFRIED) 55-92 313-349 PVS06_ROTS1 VP6 PROTEIN SIMIAN 11 ROTAVIRUS (STRAIN SA11) 55-92 313-349 PVS08_ROTS1 NONSTRUCTURAL PROTEIN NCVP4 SIMIAN 11 ROTAVIRUS (STRAIN SA11) 274-302 PVS09_ROTHT GLYCOPROTEIN VP7 HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3) 131-159 PVS09_ROTPB GLYCOPROTEIN VP7 PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BEN-144) 131-159 PVS10_ROTBN NONSTRUCTURAL GLYCOPROTEIN BOVINE ROTAVIRUS (STRAIN NCDV) 52-89 NCVP5 PVS10_ROTBU NONSTRUCTURAL GLYCOPROTEIN BOVINE ROTAVIRUS (STRAIN UK) 52-89 NCVP5 PVS10_ROTH2 NONSTRUCTURAL GLYCOPROTEIN HUMAN ROTAVIRUS (STRAIN A28) 52-89 NCVP5 PVS10_ROTH7 NONSTRUCTURAL GLYCOPROTEIN HUMAN ROTAVIRUS (STRAIN A64/CLONE 2) 52-89 NCVP5 PVS10_ROTH8 NONSTRUCTURAL GLYCOPROTEIN HUMAN ROTAVIRUS (STRAIN A64/CLONE 6) 52-89 NCVP5 PVS10_ROTHW NONSTRUCTURAL GLYCOPROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA) 52-89 NCVP5 PVS10_ROTS1 NONSTRUCTURAL GLYCOPROTEIN SIMIAN 11 ROTAVIRUS (STRAIN SA11) 52-89 NCVP5 PVSI1_ROTHW MINOR OUTER CAPSID PROTEIN HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)  99-130 PVSI1_REOVJ SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 2/STRAIN D5/JONES) 346-384 PVSI1_REOVL SIGMA 1 PROTEIN PRECURSOR REOVIRUS (TYPE 1/STRAIN LANG) 110-147 PVT1_SFVKA PROTEIN T1 PRECURSOR SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV) 147-182 PVT2_MYXVL TUMOR NECROSIS FACTOR MYXOMA VIRUS (STRAIN LAUSANNE) 261-290 SOLUBLE RECEPTOR PRECUR PVT2_SFVKA TUMOR NECROSIS FACTOR SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV) 211-249 SOLUBLE RECEPTOR PRECUR PVT3A_CAPVI PROTEIN T3A CAPRIPOXVIRUS (STRAIN INS-1) 116-150 PVTER_EBV PROBABLE DNA PACKAGING EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 166-199 505-543 PROTEIN PVTER_HCMVA PROBABLE DNA PACKAGING HUMAN CYTOMEGALOVIRUS (STRAIN AD169) 176-209 PROTEIN PVTER_HSV11 PROBABLE DNA PACKAGING ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV) 756-788 PROTEIN PVX_SEND6 X PROTEIN SENDAI VIRUS (STRAIN 6/94) 57-93 PY104_ADE07 HYPOTHETICAL 10.4 KD HUMAN ADENOVIRUS TYPE 7 55-83 EARLY PROTEIN PY10K_MSVS HYPOTHETICAL 10.9 KD MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE) (MSV) 24-54 PROTEIN PY10K_WDV HYPOTHETICAL 10 KD WHEAT DWARF VIRUS (WDV) 22-59 PROTEIN PY119_SSV1 HYPOTHETICAL 11.9 KD SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 29-64 PROTEIN PY11K_PASV HYPOTHETICAL 11.9 KD PANICUM STREAK VIRUS 29-61 PROTEIN (ORF VI) PY11K_ROTS1 HYPOTHETICAL 11 KD SIMIAN 11 ROTAVIRUS (STRAIN S11) 53-87 PROTEIN IN SEGMENT S11 PY11K_TYDVA HYPOTHETICAL 11.2 KD PROTEIN TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA) (TYDV) 28-62 PY14K_NPVAC HYPOTHETICAL 13.8 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)  65-101 IN 39 KD PROTEIN 5′REG PY18K_SSV1 HYPOTHETICAL 18.0 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 100-132 (ORF B-166) PY20K_SSV1 HYPOTHETICAL 20.4 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 129-167 (ORF B-178) PY21K_MSVN HYPOTHETICAL 21.7 KD PROTEIN MAIZE STREAK VIRUS (NIGERIAN ISOLATE) (MSV) 122-155 PY2_SOCMV HYPOTHETICAL PROTEIN 2 (ORF II) SOYBEAN CHLOROTIC MOTTLE VIRUS  99-137 PY38K_NPVAC HYPOTHETICAL 37.7 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 250-282 (ORF 2) PY85K_SSV1 HYPOTHETICAL 85.7 KD PROTEIN SULFOLOBUS VIRUS-LIKE PARTICLE SSV1 274-312 543-580 (ORF C-792) PYB13_FOWPM HYPOTHETICAL BAMHI-ORF13 FOWLPOX VIRUS (ISOLATE HP-438[MUNICH]) 114-150 PROTEIN (FRAGMENT) PYDH1_HSVSC HYPOTHETICAL 28.7 KD PROTEIN HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 206-244 IN DHFR 3′REGION (ORF PYDH3_HSVSC HYPOTHETICAL 9.5 KD PROTEIN HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488) 69-97 IN DHFR 3′REGION (ORF 3) PYEC4_EBV HYPOTHETICAL EC-RF4 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 34-68 PYIO1_CVBM HYPOTHETICAL PROTEIN IORF1 BOVINE CORONAVIRUS  84-122 PYIOR_CVBF HYPOTHETICAL PROTEIN BOVINE CORONAVIRUS (STRAIN F15) 41-75 137-165 IN NUCLEOCAPSID ORF (IORF) PYIOR_CVBM HYPOTHETICAL PROTEIN IN BOVINE CORONAVIRUS (STRAIN MEBUS) 41-74 137-165 NUCLEOCAPSID ORF (IORF) PYIOR_CVTKE HYPOTHETICAL PROTEIN IN TURKEY ENTERIC CORONAVIRUS (TCV) 41-74 137-165 NUCLEOCAPSID ORF (IORF) PYKR2_EBV HYPOTHETICAL BKRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)  67-100 PYMR2_EBV BMRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 250-284 PYOR1_COYMV HYPOTHETICAL 23 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS (COYMV)  93-130 166-198 (ORF 1) PYOR2_COYMV HYPOTHETICAL 15 KD PROTEIN COMMELINA YELLOW MOTTLE VIRUS (COYMV) 23-56 (ORF 2) PYOR3_PVXXC HYPOTHETICAL 12 KD PROTEIN POTATO VIRUS X (STRAIN XC) (PVX)  7-39 (ORF 3) (FRAGMENT) PYOR3_WCMVM HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN M) (WCMV) 63-94 (ORF 3) PYOR3_WCMVO HYPOTHETICAL 13 KD PROTEIN WHITE CLOVER MOSAIC VIRUS (STRAIN O) (WCMV) 64-95 (ORF 3) PYOR5_ADEG1 HYPOTHETICAL 31.5 KD PROTEIN AVIAN ADENOVIRUS GAL1 237-272 (ORF 5) PYORG_TTV1 HYPOTHETICAL 7.1 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) (TTV1)  5-34 PYORM_TTV1 HYPOTHETICAL 38.6 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) (TTV1) 233-263 PYORP_TTV1 HYPOTHETICAL 20.2 KD PROTEIN THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) (TTV1)  91-124 PYP24_RTBV HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (RTBV) 104-133 159-191 (ORF 1) PYP24_RTBVP HYPOTHETICAL P24 PROTEIN RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) (RTBV) 104-133 159-191 (ORF 1) PYP47_NPVAC HYPOTHETICAL 43.5 KD PROTEIN AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV) 23-51 IN P47 3′REGION PYRF5_HSV6G HYPOTHETICAL PROTEIN RF5 HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS) 180-216 PYRR2_EBV HYPOTHETICAL BRRF2 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 13-42 PYSR1_EBV HYPOTHETICAL BSRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)  92-120 PYTR1_EBV HYPOTHETICAL BTRF1 PROTEIN EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4) 306-336 PYVAE_VACCC HYPOTHETICAL 18.2 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 21-53 PYVAL_VACCV HYPOTHETICAL 9.9 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 21-49 PYVBC_VACCC HYPOTHETICAL 10.8 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN) 22-53 PYVDG_VACCV HYPOTHETICAL 10.4 KD PROTEIN VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN) 31-64 PYVEF_VACCC HYPOTHETICAL 12.9 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN)  8-42 PYVFC_VACCC HYPOTHETICAL 11.6 KD PROTEIN VACCINIA VIRUS (STRAIN COPENHAGEN)  7-35 PZNFP_LYCVA ZINC FINGER PROTEIN LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN ARMSTRONG) 29-57 PZNFP_LYCVP ZINC FINGER PROTEIN (FRAGMENT) LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN PASTEUR)  8-32

TABLE XV RESPIRATORY SYNCYTIAL VIRUS DP107 F2 REGION ANALOG (SEQ ID NO:16) CARBOXY TRUNCATIONS* X-YTS-Z X-YTSV-Z X-YTSVI-Z X-YTSVIT-Z X-YTSVITI-Z X-YTSVITIE-Z X-YTSVITIEL-Z X-YTSVITIELS-Z X-YTSVITIELSN-Z X-YTSVITIELSNI-Z X-YTSVITIELSNIK-Z X-YTSVITIELSNIKE-Z X-YTSVITIELSNIKEN-Z X-YTSVITIELSNIKENK-Z X-YTSVITIELSNIKENKC-Z X-YTSVITIELSNIKENKCN-Z X-YTSVITIELSNIKENXCNG-Z X-YTSVITIELSNIKENKCNGT-Z X-YTSVITIELSNIKENKCNGTD-Z X-YTSVITIELSNIKENKCNGTDA-Z X-YTSVITIELSNIKENKCNGTDAK-Z X-YTSVITIELSNIKENKCNGTDAKV-Z X-YTSVITIELSNIKENKCNGTDAKVK-Z X-YTSVITIELSNIKENKCNGTDAKVKL-Z X-YTSVITIELSNIKENKCNGTDAKVKLI-Z X-YTSVITIELSNIKENKCNGTDAKVKLIK-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQ-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQE-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQEL-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELD-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDK-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKY-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYK-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVT-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTE-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTEL-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQ-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQL-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLL-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLM-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQS-Z X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z (SEQ ID NO:16) (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XVI RESPIRATORY SYNCYTIAL VIRUS F2 DP178/DP107 REGION ANALOG (SEQ ID NO:16) AMINO TRUNCATIONS* X-QST-Z X-MQST-Z X-LMQST-Z X-LLMQST-Z X-QLLMQST-Z X-LQLLMQST-Z X-ELQLLMQST-Z X-TELQLLMQST-Z X-VTELQLLMQST-Z X-AVTELQLLMQST-Z X-NAVTELQLLMQST-Z X-KNAVTELQLLMQST-Z X-YKNAVTELQLLMQST-Z X-KYKNAVTELQLLMQST-Z X-DKYKNAVTELQLLMQST-Z X-LDKYKNAVTELQLLMQST-Z X-ELDKYKNAVTELQLLMQST-Z X-QELDKYKNAVTELQLLMQST-Z X-KQELDKYKNAVTELQLLMQST-Z X-IKQELDKYKNAVTELQLLMQST-Z X-LIKQELDKYKNAVTELQLLMQST-Z X-KLIKQELDKYKNAVTELQLLMQST-Z X-VKLIKQELDKYKNAVTELQLLMQST-Z X-KVKLIKQELDKYKNAVTELQLLMQST-Z X-AKVKLIKQELDKYKNAVTELQLLMQST-Z X-DAKVKLIKQELDKYKNAVTELQLLMQST-Z X-TDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-GTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-NGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-CNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-KCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-NKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-ENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-KENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-IKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-NIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-SNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-LSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-ELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-IELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-TIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-ITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-VITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-SVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z X-TSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XVII RESPIRATORY SYNCYTIAL VIRUS F1 DP178 REGION ANALOG (SEQ ID NO:17) CARBOXY TRUNCATIONS* X-FYD-Z X-FYDP-Z X-FYDPL-Z X-FYDPLV-Z X-FYDPLVF-Z X-FYDPLVFP-Z X-FYDPLVFPS-Z X-FYDPLVFPSD-Z X-FYDPLVFPSDE-Z X-FYDPLVFPSDEF-Z X-FYDPLVFPSDEFD-Z X-FYDPLVFPSDEFDA-Z X-FYDPLVFPSDEFDAS-Z X-FYDPLVFPSDEFDASI-Z X-FYDPLVFPSDEFDASIS-Z X-FYDPLVFPSDEFDASISQ-Z X-FYDPLVFPSDEFDASISQV-Z X-FYDPLVFPSDEFDASISQVN-Z X-FYDPLVFPSDEFDASISQVNE-Z X-FYDPLVFPSDEFDASISQVNEK-Z X-FYDPLVFPSDEFDASISQVNFKI-Z X-FYDPLVFPSDEFDASISQVNLKIN-Z X-FYDPLVFPSDEFDASISQVNEKINQ-Z X-FYDPLVFPSDEFDASISQVNEKINQS-Z X-FYDPLVFPSDEFDASISQVNEKINQSL-Z X-FYDPLVFPSDEFDASISQVNEKINQSLA-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAF-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFI-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIR-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRK-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKS-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSD-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDE-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDEL-Z X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z (SEQ ID NO:17) (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XIX HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP178 ANALOG (SEQ ID NO:18) CARBOXY TRUNCATIONS* X-ITL-Z X-ITLN-Z X-ITLNN-Z X-ITLNNS-Z X-ITLNNSV-Z X-ITLNNSVA-Z X-ITLNNSVAL-Z X-ITLNNSVALD-Z X-ITLNNSVALDP-Z X-ITLNNSVALDPI-Z X-ITLNNSVALDPID-Z X-ITLNNSVALDPIDI-Z X-ITLNNSVALDPIDIS-Z X-ITLNNSVALDPIDISI-Z X-ITLNNSVALDPIDISIE-Z X-ITLNNSVALDPIDISIEL-Z X-ITLNNSVALDPIDISIELN-Z X-ITLNNSVALDPIDISIELNK-Z X-ITLNNSVALDPIDISIELNKA-Z X-ITLNNSVALDPIDISIELNKAK-Z X-ITLNNSVALDPIDISIELNKAKS-Z X-ITLNNSVALDPIDISIELNKAKSD-Z X-ITLNNSVALDPIDISIELNKAKSDL-Z X-ITLNNSVALDPIDISIELNKAKSDLE-Z X-ITLNNSVALDPIDISIELNKAKSDLEE-Z X-ITLNNSVALDPIDISIELNKAKSDLEES-Z X-ITLNNSVALDPIDISIELNKAKSDLEESK-Z X-ITLNNSVALDPIDISIELNKAKSDLEESKE-Z X-ITLNNSVALDPIDISIELNKAKSDLEESKEW-Z X-ITLNNSVALDPIDISIELNKAKSDLEESKEWI-Z X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIR-Z X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRR-Z X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z (SEQ ID NO:18) (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XVIII RESPIRATORY SYNCYTIAL VIRUS F1 DP178 REGION ANALOG (SEQ ID NO:17) AMINO TRUNCATIONS* X-DELL-Z X-SDELL-Z X-KSDELL-Z X-RKSDELL-Z X-IRKSDELL-Z X-FIRKSDELL-Z X-AFIRKSDELL-Z X-LAFIRKSDELL-Z X-SLAFIRKSDELL-Z X-QSLAFIRKSDELL-Z X-NQSLAFIRKSDELL-Z X-INQSLAFIRKSDELL-Z X-KINQSLAFIRKSDELL-Z X-EKINQSLAFIRKSDELL-Z X-NEKINQSLAFIRKSDELL-Z X-VNEKINQSLAFIRKSDELL-Z X-QVNEKINQSLAFIRKSDELL-Z X-SQVNEKINQSLAFIRKSDELL-Z X-ISQVNEKINQSLAFIRKSDELL-Z X-SISQVNEKINQSLAFIRKSDELL-Z X-ASISQVNEKINQSLAFIRKSDELL-Z X-DASISQVNEKINQSLAFIRKSDELL-Z X-FDASISQVNEKINQSLAFIRKSDELL-Z X-EFDASISQVNEKINQSLAFIRKSDELL-Z X-DEFDASISQVNEKINQSLAFIRKSDELL-Z X-SDEFDASISQVNEKINQSLAFIRKSDELL-Z X-PSDEFDASISQVNEKINQSLAFIRKSDELL-Z X-FPSDEFDASISQVNEKINQSLAFIRKSDELL-Z X-VFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z X-LVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z X-PLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z X-DPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z X-YDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XX HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP178 ANALOG (SEQ ID NO:18) AMINO TRUNCATIONS* X-RRS-Z X-IRRS-Z X-WIRRS-Z X-EWIRRS-Z X-KEWIRRS-Z X-SKEWIRRS-Z X-ESKEWIRRS-Z X-EESKEWIRRS-Z X-LEESKEWIRRS-Z X-DLEESKEWIRRS-Z X-SDLEESKEWIRRS-Z X-KSDLEESKEWIRRS-Z X-AKSDLEESKEWIRRS-Z X-KAKSDLEESKEWIRRS-Z X-NKAKSDLEESKEWIRRS-Z X-LNKAKSDLEESKEWIRRS-Z X-ELNKAKSDLEESKEWIRRS-Z X-IELNKAKSDLEESKEWIRRS-Z X-SIELNKAKSDLEESKEWIRRS-Z X-ISIELNKAKSDLEESKEWIRRS-Z X-DISIELNKAKSDLEESKEWIRRS-Z X-IDISIELNKAKSDLEESKEWIRRS-Z X-PIDISIELNKAKSDLEESKEWIRRS-Z X-DPIDISIELNKAKSDLEESKEWIRRS-Z X-LDPIDISIELNKAKSDLEESKEWIRRS-Z X-ALDPIDISIELNKAKSDLEESKEWIRRS-Z X-VALDPIDISIELNKAKSDLEESKEWIRRS-Z X-SVALDPIDISIELNKAKSDLEESKEWIRRS-Z X-NSVALDPIDISIELNKAKSDLEESKEWIRRS-Z X-NNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XXI HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP107 ANALOG (SEQ ID NO:19) CARBOXY TRUNCATIONS* X-ALG-Z X-ALGV-Z X-ALGVA-Z X-ALGVAT-Z X-ALGVATS-Z X-ALGVATSA-Z X-ALGVATSAQ-Z X-ALGVATSAQI-Z X-ALGVATSAQIT-Z X-ALGVATSAQITA-Z X-ALGVATSAQITAA-Z X-ALGVATSAQITAAV-Z X-ALGVATSAQITAAVA-Z X-ALGVATSAQITAAVAL-Z X-ALGVATSAQITAAVALV-Z X-ALGVATSAQITAAVALVE-Z X-ALGVATSAQITAAVALVEA-Z X-ALGVATSAQITAAVALVEAK-Z X-ALGVATSAQITAAVALVEAKQ-Z X-ALGVATSAQITAAVALVEAKQA-Z X-ALGVATSAQITAAVALVEAKQAR-Z X-ALGVATSAQITAAVALVEAKQARS-Z X-ALGVATSAQITAAVALVEAKQARSD-Z X-ALGVATSAQITAAVALVEAKQARSDI-Z X-ALGVATSAQITAAVALVEAKQARSDIE-Z X-ALGVATSAQITAAVALVEAKQARSDIEK-Z X-ALGVATSAQITAAVALVEAKQARSDIEKL-Z X-ALGVATSAQITAAVALVEAKQARSDIEKLK-Z X-ALGVATSAQITAAVALVEAKQARSDIEKLKE-Z X-ALGVATSAQITAAVALVEAKQARSDIEKLKEA-Z X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAI-Z X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAIR-Z (SEQ ID NO:19) (*The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XXII HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP107 ANALOG (SEQ ID NO:19) AMINO TRUNCATIONS* X-IRD-Z X-AIRD-Z X-EAIRD-Z X-KEAIRD-Z X-LKEAIRD-Z X-KLKEAIRD-Z X-EKLKEAIRD-Z X-IEKLKEAIRD-Z X-DIEKLKEAIRD-Z X-SDIEKLKEAIRD-Z X-RSDIEKLKEAIRD-Z X-ARSDIEKLKEAIRD-Z X-QARSDIEKLKEAIRD-Z X-KQARSDIEKLKEAIRD-Z X-AKQARSDIEKLKEAIRD-Z X-EAKQARSDIEKLKEAIRD-Z X-VEAKQARSDIEKLKEAIRD-Z X-LVEAKQARSDIEKLKEAIRD-Z X-ALVEAKQARSDIEKLKEAIRD-Z X-VALVEAKQARSDIEKLKEAIRD-Z X-AVALVEAKQARSDIEKLKEAIRD-Z X-AAVALVEAKQARSDIEKLKEAIRD-Z X-TAAVALVEAKQARSDIEKLKEAIRD-Z X-ITAAVALVEAKQARSDIEKLKEAIRD-Z X-QITAAVALVEAKQARSDIEKLKEAIRD-Z X-AQITAAVALVEAKQARSDIEKLKEAIRD-Z X-SAQITAAVALVEAKQARSDIEKLKEAIRD-Z X-TSAQITAAVALVEAKQARSDIEKLKEAIRD-Z X-ATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z X-VATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z X-GVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z X-LGVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z (The one letter amino acid code is used.) Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

TABLE XXIII REPRESENTATIVE DP107/DP178 ANALOG ANTIVIRAL PEPTIDES Anti-Respiratory syncytial virus peptides X-TSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z X-SVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z X-VITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z (SEQ ID NO:20) X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z (SEQ ID NO:21) X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z (SEQ ID NO:22) X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z (SEQ ID NO:23) X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z (SEQ ID NO:24) X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z (SEQ ID NO:25) X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z (SEQ ID NO:26) X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z (SEQ ID NO:27) X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z (SEQ ID NO:28) X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z (SEQ ID NO:29) X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z (SEQ ID NO:30) X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z (SEQ ID NO:31) X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z (SEQ ID NO:32) X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z Anti-human parainfluenza virus 3 peptides X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRSN-Z (SEQ ID NO:33) X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRSNQ-Z (SEQ ID NO:34) X-NNSVALDPIDISIELNKAKSDLEESKEWIRRSNQK-Z (SEQ ID NO:35) X-NSVALDPIDISIELNKAKSDLEESKEWIRRSNQKL-Z (SEQ ID NO:36) X-SVALDPIDISIELNKAKSDLEESKEWIRRSNQKLD-Z (SEQ ID NO:37) X-VALDPIDISIELNKAKSDLEESKEWIRRSNQKLDS-Z (SEQ ID NO:38) X-ALDPIDISIELNKAKSDLEESKEWIRRSNQKLDSI-Z (SEQ ID NO:39) X-LDPIDISIELNKAKSDLEESKEWIRRSNQKLDSIG-Z (SEQ ID NO:40) X-DPIDISIELNKAKSDLEESKEWIRRSNQKLDSIGN-Z (SEQ ID NO:41) X-PIDISIELNKAKSDLEESKEWIRRSNQKLDSIGNW-Z (SEQ ID NO:42) X-IDISIELNKAKSDLEESKEWIRRSNQKLDSIGNWH-Z (SEQ ID NO:43) X-DISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQ-Z (SEQ ID NO:44) X-ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS-Z (SEQ ID NO:45) X-SIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSS-Z (SEQ ID NO:46) X-IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST-Z (SEQ ID NO:47) X-ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT-Z (SEQ ID NO:48) X-TAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQS-Z (SEQ ID NO:49) X-AVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSI-Z (SEQ ID NO:50) X-LVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNL-Z (SEQ ID NO:51) X-VEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLI-Z (SEQ ID NO:52) X-EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIV-Z (SEQ ID NO:53) X-AKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVA-Z (SEQ ID NO:54) X-KQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAI-Z (SEQ ID NO:55) X-QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-Z (SEQ ID NO:56) X-ARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKS-Z (SEQ ID NO:57) X-RSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSV-Z (SEQ ID NO:58) X-SDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQ-Z (SEQ ID NO:59) X-KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVN-Z (SEQ ID NO:60) X-LKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK-Z (SEQ ID NO:61) X-AIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIV-Z (SEQ ID NO:62) Anti-simian immunodeficiency virus peptides X-WQEWERKVDFLEENITALLEEAQIQQEKNMYELQK-Z (SEQ ID NO:63) X-QEWERKVDFLEENITALLEEAQIQQEKNMYELQKL-Z (SEQ ID NO:64) X-EWERKVDFLEENITALLEEAQIQQEKNMYELQKLN-Z (SEQ ID NO:65) X-WERKVDFLEENITALLEEAQIQQEKNMYELQKLNS-Z (SEQ ID NO:66) X-ERKVDFLEENITALLEEAQIQQEKNMYELQKLNSW-Z (SEQ ID NO:67) X-RKVDFLEENITALLEEAQIQQEKNMYELQKLNSWD-Z (SEQ ID NO:68) X-KVDFLEENITALLEEAQIQQEKNMYELQKLNSWDV-Z (SEQ ID NO:69) X-VDFLEENITALLEEAQIQQEKNMYELQKLNSWDVF-Z (SEQ ID NO:70) X-DFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG-Z (SEQ ID NO:71) X-FLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN-Z (SEQ ID NO:72) Anti-measles virus peptides X-LHRIDLGPPISLERLDVGTNLGNAIAKLEAKELL-Z (SEQ ID NO:73) X-HRIDLGPPISLERLDVGTNLGNAIAKLEAKELLE-Z (SEQ ID NO:74) X-RIDLGPPISLERLDVGTNLGNAIAKLEAKELLES-Z (SEQ ID NO:75) X-IDLGPPISLERLDVGTNLGNAIAKLEAKELLESS-Z (SEQ ID NO:76) X-DLGPPISLERLDVGTNLGNAIAKLEAKELLESSD-Z (SEQ ID NO:77) X-LGPPISLERLDVGTNLGNAIAKLEAKELLESSDQ-Z (SEQ ID NO:78) X-GPPISLERLDVGTNLGNAIAKLEAKELLESSDQI-Z (SEQ ID NO:79) X-PPISLERLDVGTNLGNAIAKLEAKELLESSDQIL-Z (SEQ ID NO:80) X-PISLERLDVGTNLGNAIAKLEAKELLESSDQILR-Z (SEQ ID NO:81) X-SLERLDVGTNLGNAIAKLEAKELLESSDQILRSM-Z (SEQ ID NO:82) X-LERLDVGTNLGNAIAKLEAKELLESSDQILRSMK-Z (SEQ ID NO:83) Anti-Hepatitis B Virus Peptides X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGGTTVCLGQNSQSP-Z; X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGT-Z; X-LLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTT-Z; X-LVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTV-Z; X-LQAGFFLLTRILTIPQSLDSWWTSLNGLGGTTVCL-Z; X-QAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLG-Z; X-AGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQ-Z; X-GFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQN-Z; X-FFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNS-Z; X-FLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQ-Z; X-LLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS-Z; X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCMTT-Z; X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDTQGML-Z; X-GYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLP-Z X-YRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPV-Z; X-RWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z; X-WMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCP-Z; X-MCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPI-Z; X-CLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLI-Z; X-LRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIP-Z; X-RRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPG-Z; X-RFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS-Z; X-FIIFLFILLLCLIFLLVLLDYQGMLPVCPLIGGSS-Z; X-IIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSST-Z; X-IFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTS-Z; X-FLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTST-Z; X-LFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTG-Z; X-FILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGP-Z; X-ILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPC-Z; X-LLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCR-Z; X-LLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRT-Z; X-LCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTC-Z; X-CLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCM-Z; X-LIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCMT-Z; or X-IFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCMTT-Z; The one letter amino acid code is used. Additionally, “X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates. “Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

5.4. Synthesis of Peptides

The peptides of the invention may be synthesized or prepared by techniques well known in the art. See, for example, Creighton, 1983, Proteins: Structures and Molecular Principles, W.H. Freeman and Co., NY, which is incorporated herein by reference in its entirety. Short peptides, for example, can be synthesized on a solid support or in solution. Longer peptides may be made using recombinant DNA techniques. Here, the nucleotide sequences encoding the peptides of the invention may be synthesized, and/or cloned, and expressed according to techniques well known to those of ordinary skill in the art. See, for example, Sambrook, et al., 1989, Molecular Cloning, A Laboratory Manual, Vols. 1-3, Cold Spring Harbor Press, NY.

The peptides of the invention may alternatively be synthesized such that one or more of the bonds which link the amino acid residues of the peptides are non-peptide bonds. These alternative non-peptide bonds may be formed by utilizing reactions well known to those in the art, and may include, but are not limited to imino, ester, hydrazide, semicarbazide, and azo bonds, to name but a few. In yet another embodiment of the invention, peptides comprising the sequences described above may be synthesized with additional chemical groups present at their amino and/or carboxy termini, such that, for example, the stability, bioavailability, and/or inhibitory activity of the peptides is enhanced. For example, hydrophobic groups such as carbobenzoxyl, dansyl, or t-butyloxycarbonyl groups, may be added to the peptides' amino termini. Likewise, an acetyl group or a 9-fluorenylmethoxy-carbonyl group may be placed at the peptides' amino termini. (See “X” in Tables I to IV, above.) Additionally, the hydrophobic group, t-butyloxycarbonyl, or an amido group may be added to the peptides' carboxy termini. (See “Z” in Tables I to IV, above.)

Further, the peptides of the invention may be synthesized such that their steric configuration is altered. For example, the D-isomer of one or more of the amino acid residues of the peptide may be used, rather than the usual L-isomer.

Still further, at least one of the amino acid residues of the peptides of the invention may be substituted by one of the well known non-naturally occurring amino acid residues. Alterations such as these may serve to increase the stability, bioavailability and/or inhibitory action of the peptides of the invention.

Any of the peptides described above may, additionally, have a macromolecular carrier group covalently attached to their amino and/or carboxy termini. Such macromolecular carrier groups may include, for example, lipid-fatty acid conjugates, polyethylene glycol, carbohydrates or additional peptides. “X”, in Tables I to IV, above, may therefore additionally represent any of the above macromolecular carrier groups covalently attached to the amino terminus of a peptide, with an additional peptide group being preferred. Likewise, “Z”, in Tables I to IV, may additionally represent any of the macromolecular carrier groups described above.

5.5. Assays for Anti-Membrane Fusion Activity

Described herein, are methods for ability of a compound, such as the peptides of the invention, to inhibit membrane fusion events. Specifically, assays for cell fusion events are described in Section 5.5.1, below, and assays for antiviral activity are described in Section 5.5.2, below.

5.5.1 Assays for Cell Fusion Events

Assays for cell fusion events are well known to those of skill in the art, and may be used in conjunction, for example, with the peptides of the invention to test the peptides' antifusogenic capabilities.

Cell fusion assays are generally performed in vitro. Such an assay may comprise culturing cells which, in the absence of any treatment would undergo an observable level of syncytial formation. For example, uninfected cells may be incubated in the presence of cells chronically infected with a virus that induces cell fusion. Such viruses may include, but are not limited to, HIV, SIV, or respiratory syncytial virus.

For the assay, cells are incubated in the presence of a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added.

Standard conditions for culturing cells, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and syncytial formation. Well known stains, such as crystal violet stain, may be used to facilitate the visualization of syncytial formation.

5.5.2 Assays for Antiviral Activity

The antiviral activity exhibited by the peptides of the invention may be measured, for example, by easily performed in vitro assays, such as those described below, which can test the peptides' ability to inhibit syncytia formation, or their ability to inhibit infection by cell-free virus. Using these assays, such parameters as the relative antiviral activity of the peptides, exhibit against a given strain of virus and/or the strain specific inhibitory activity of the peptide can be determined.

A cell fusion assay may be utilized to test the peptides' ability to inhibit viral-induced, such as HIV-induced, syncytia formation in vitro. Such an assay may comprise culturing uninfected cells in the presence of cells chronically infected with a syncytial-inducing virus and a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added. Standard conditions for culturing, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and syncytia formation. Well known stains, such as crystal violet stain, may be used to facilitate syncytial visualization. Taking HIV as an example, such an assay would comprise CD-4⁺ cells (such as Molt or CEM cells, for example) cultured in the presence of chronically HIV-infected cells and a peptide to be assayed.

Other well known characteristics of viral infection may also be assayed to test a peptide's antiviral capabilities. Once again taking HIV as an example, a reverse transcriptase (RT) assay may be utilized to test the peptides' ability to inhibit infection of CD-4⁺ cells by cell-free HIV. Such an assay may comprise culturing an appropriate concentration (i.e., TCID₅₀) of virus and CD-4⁺ cells in the presence of the peptide to be tested. Culture conditions well known to those in the art are used. As above, a range of peptide concentrations may be used, in addition to a control culture wherein no peptide has been added. After incubation for an appropriate period (e.g., 7 days) of culturing, a cell-free supernatant is prepared, using standard procedures, and tested for the present of RT activity as a measure of successful infection. The RT activity may be tested using standard techniques such as those described by, for example, Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and/or Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). These references are incorporated herein by reference in their entirety.

Standard methods which are well-known to those of skill in the art may be utilized for assaying non-retroviral activity. See, for example, Pringle et al. (Pringle, C. R. et al., 1985, J. Medical Virology 17:377-386) for a discussion of respiratory syncytial virus and parainfluenza virus activity assay techniques. Further, see, for example, “Zinsser Microbiology”, 1988, Joklik, W. K. et al., eds., Appleton & Lange, Norwalk, Conn., 19th ed., for a general review of such techniques. These references are incorporated by reference herein in their entirety. In addition, the Examples presented below, in Sections 17, 18, 26 and 27 each provide additional assays for the testing of a compound's antiviral capability.

In vivo assays may also be utilized to test, for example, the antiviral activity of the peptides of the invention. To test for anti-HIV activity, for example, the in vivo model described in Barnett et al. (Barnett, S. W. et al., 1994, Science 266:642-646) may be used.

Additionally, anti-RSV activity can be assayed in vivo via well known mouse models. For example, RSV can be administered intranasally to mice of various inbred strains. Virus replicates in lungs of all strains, but the highest titers are obtained in P/N, C57L/N and DBA/2N mice. Infection of BALB/c mice produces an asymptomatic bronchiolitis characterized by lymphocytic infiltrates and pulmonary virus titers of 10⁴ to 10⁵ pfu/g of lung tissue (Taylor, G. et al., 1984, Infect. Immun. 43:649-655).

Cotton rat models of RSV are also well known. Virus replicates to high titer in the nose and lungs of the cotton rat but produces few if any signs of inflammation.

5.6. Uses of the Peptides of the Invention

The peptides of the invention may be utilized as antifusogenic or antiviral compounds, or as compounds which modulate intracellular processes involving coiled coil peptide structures. Further, such peptides may be used to identify agents which exhibit antifusogenic, antiviral or intracellular modulatory activity. Still further, the peptides of the invention may be utilized as organism or viral type/subtype-specific diagnostic tools.

The antifusogenic capability of the peptides of the invention may additionally be utilized to inhibit or treat/ameliorate symptoms caused by processes involving membrane fusion events. Such events may include, for example, virus transmission via cell-cell fusion, abnormal neurotransmitter exchange via cell-fusion, and sperm-egg fusion. Further, the peptides of the invention may be used to inhibit free viral, such as retroviral, particularly HIV, transmission to uninfected cells wherein such viral infection involves membrane fusion events or involves fusion of a viral structure with a cell membrane. Among the intracellular disorders involving coiled coil peptides structures which may be ameliorated by the peptides of the invention are disorders involving, for example, bacterial toxins.

With respect to antiviral activity, the viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to all strains of the viruses listed above, in Tables V through VII, and IX through XIV.

These viruses include, for example, human retroviruses, particularly HIV-1 and HIV-2 and the human T-lymphocyte viruses (HTLV-I and II). The non-human retroviruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to bovine leukosis virus, feline sarcoma and leukemia viruses, simian immunodeficiency, sarcoma and leukemia viruses, and sheep progress pneumonia viruses.

Non retroviral viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to human respiratory syncytial virus, canine distemper virus, newcastle disease virus, human parainfluenza virus, influenza viruses, measles viruses, Epstein-Barr viruses, hepatitis B viruses, and simian Mason-Pfizer viruses.

Non enveloped viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to picornaviruses such as polio viruses, hepatitis A virus, enterovirus, echoviruses and coxsackie viruses, papovaviruses such as papilloma virus, parvoviruses, adenoviruses and reoviruses.

As discussed more fully, below, in Section 5.5.1 and in the Example presented, below, in Section 8, DP107, DP178, DP107 analog and DP178 analog peptides form non-covalent protein-protein interactions which are required for normal activity of the virus. Thus, the peptides of the invention may also be utilized as components in assays for the identification of compounds that interfere with such protein-protein interactions and may, therefore, act as antiviral agents. These assays are discussed, below, in Section 5.5.1.

As demonstrated in the Example presented below in Section 6, the antiviral activity of the peptides of the invention may show a pronounced type and subtype specificity, i.e., specific peptides may be effective in inhibiting the activity of only specific viruses. This feature of the invention presents many advantages. One such advantage, for example, lies in the field of diagnostics, wherein one can use the antiviral specificity of the peptide of the invention to ascertain the identity of a viral isolate. With respect to HIV, one may easily determine whether a viral isolate consists of an HIV-1 or HIV-2 strain. For example, uninfected CD-4⁺ cells may be co-infected with an isolate which has been identified as containing HIV the DP178 (SEQ ID:1) peptide, after which the retroviral activity of cell supernatants may be assayed, using, for example, the techniques described above in Section 5.2. Those isolates whose retroviral activity is completely or nearly completely inhibited contain HIV-1. Those isolates whose viral activity is unchanged or only reduced by a small amount, may be considered to not contain HIV-1. Such an isolate may then be treated with one or more of the other DP178 peptides of the invention, and subsequently be tested for its viral activity in order to determine the identify of the viral isolate. The DP107 and DP178 analogs of the invention may also be utilized in a diagnostic capacity specific to the type and subtype of virus or organism in which the specific peptide sequence is found. A diagnostic procedure as described, above, for DP178, may be used in conjunction with the DP107/DP178 analog of interest.

5.5.1. Screening Assays

As demonstrated in the Example presented in Section 8, below, DP107 and DP178 portions of the TM protein gp41 form non-covalent protein-protein interactions. As is also demonstrated, the maintenance of such interactions is necessary for normal viral infectivity. Thus, compounds which bind DP107, bind DP178, and/or act to disrupt normal DP107/DP178 protein-protein interactions may act as antifusogenic, antiviral or cellular modulatory agents. Described below are assays for the identification of such compounds. Note that, while, for ease and clarity of discussion, DP107 and DP178 peptides will be used as components of the assays described, but it is to be understood that any of the DP107 analog or DP178 analog peptides described, above, in Sections 5.1 through 5.3 may also be utilized as part of these screens for compounds.

Compounds which may be tested for an ability to bind DP107, DP178, and/or disrupt DP107/DP178 interactions, and which therefore, potentially represent antifusogenic, antiviral or intracellular modulatory compounds, include, but are not limited to, peptides made of D- and/or L-configuration amino acids (m, for example, the form of random peptide libraries; see Lam, K. S. et al., 1991, Nature 354:82-84), phosphopeptides (m, for example, the form of random or partially degenerate, directed phosphopeptide libraries; see, for example, Songyang, Z. et al., 1993, Cell 72:767-778), antibodies, and small organic or inorganic molecules. Synthetic compounds, natural products, and other sources of potentially effective materials may be screened in a variety of ways, as described in this Section.

The compounds, antibodies, or other molecules identified may be tested, for example, for an ability to inhibit cell fusion or viral activity, utilizing, for example, assays such as those described, above, in Section 5.5.

Among the peptides which may be tested are soluble peptides comprising DP107 and/or DP178 domains, and peptides comprising DP107 and/or DP178 domains having one or more mutations within one or both of the domains, such as the M41-P peptide described, below, in the Example presented in Section 8, which contains a isoleucine to proline mutation within the DP178 sequence.

In one embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

-   -   (a) exposing at least one compound to a peptide comprising a         DP107 peptide for a time sufficient to allow binding of the         compound to the DP107 peptide;     -   (b) removing non-bound compounds; and     -   (c) determining the presence of the compound bound to the DP107         peptide, thereby identifying an agent to be tested for antiviral         ability.

In a second embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

-   -   (a) exposing at least one compound to a peptide comprising a         DP178 peptide for a time sufficient to allow binding of the         compound to the DP178 peptide;     -   (b) removing non-bound compounds; and     -   (c) determining the presence of the compound bound to the DP178         peptide, thereby identifying an agent to be tested for antiviral         ability.

One method utilizing these types of approaches that may be pursued in the isolation of such DP107-binding or DP178-binding compounds is an assay which would include the attachment of either the DP107 or the DP178 peptide to a solid matrix, such as, for example, agarose or plastic beads, microtiter plate wells, petri dishes, or membranes composed of, for example, nylon or nitrocellulose. In such an assay system, either the DP107 or DP178 protein may be anchored onto a solid surface, and the compound, or test substance, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored component may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying.

Alternatively, an immobilized antibody, preferably a monoclonal antibody, specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.

In order to conduct the assay, the labeled compound is added to the coated surface containing the anchored DP107 or DP178 peptide. After the reaction is complete, unreacted components are removed (e.g., by washing) under conditions such that any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the compound is pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the labeled component is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the compound (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody).

Alternatively, such an assay can be conducted in a liquid phase, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for DP107 or DP178, whichever is appropriate for the given assay, or an antibody specific for the compound, i.e., the test substance, in order to anchor any complexes formed in solution, and a labeled antibody specific for the other member of the complex to detect anchored complexes.

By utilizing procedures such as this, large numbers of types of molecules may be simultaneously screened for DP107 or DP178-binding capability, and thus potential antiviral activity.

Further, compounds may be screened for an ability to inhibit the formation of or, alternatively, disrupt DP107/DP178 complexes. Such compounds may then be tested for antifusogenic, antiviral or intercellular modulatory capability. For ease of description, DP107 and DP178 will be referred to as “binding partners.” Compounds that disrupt such interactions may exhibit antiviral activity. Such compounds may include, but are not limited to molecules such as antibodies, peptides, and the like described above.

The basic principle of the assay systems used to identify compounds that interfere with the interaction between the DP107 and DP178 peptides involves preparing a reaction mixture containing peptides under conditions and for a time sufficient to allow the two peptides to interact and bind, thus forming a complex. In order to test a compound for disruptive activity, the reaction is conducted in the presence and absence of the test compound, i.e., the test compound may be initially included in the reaction mixture, or added at a time subsequent to the addition of one of the binding partners; controls are incubated without the test compound or with a placebo. The formation of any complexes between the binding partners is then detected. The formation of a complex in the control reaction, but not in the reaction mixture containing the test compound indicates that the compound interferes with the interaction of the DP107 and DP178 peptides.

The assay for compounds that interfere with the interaction of the binding partners can be conducted in a heterogeneous or homogeneous format. Heterogeneous assays involve anchoring one of the binding partners onto a solid phase and detecting complexes anchored on the solid phase at the end of the reaction. In homogeneous assays, the entire reaction is carried out in a liquid phase. In either approach, the order of addition of reactants can be varied to obtain different information about the compounds being tested. For example, test compounds that interfere with the interaction between the binding partners, e.g., by competition, can be identified by conducting the reaction in the presence of the test substance; i.e., by adding the test substance to the reaction mixture prior to or simultaneously with the binding partners. On the other hand, test compounds that disrupt preformed complexes, e.g. compounds with higher binding constants that displace one of the binding partners from the complex, can be tested by adding the test compound to the reaction mixture after complexes have been formed. The various formats are described briefly below.

In a heterogeneous assay system, one binding partner, e.g., either the DP107 or DP178 peptide, is anchored onto a solid surface, and its binding partner, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored species may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying. Alternatively, an immobilized antibody specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.

In order to conduct the assay, the binding partner of the immobilized species is added to the coated surface with or without the test compound. After the reaction is complete, unreacted components are removed (e.g., by washing) and any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the binding partner was pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the binding partner is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the binding partner (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody). Depending upon the order of addition of reaction components, test compounds which inhibit complex formation or which disrupt preformed complexes can be detected.

Alternatively, the reaction can be conducted in a liquid phase in the presence or absence of the test compound, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for one binding partner to anchor any complexes formed in solution, and a labeled antibody specific for the other binding partner to detect anchored complexes. Again, depending upon the order of addition of reactants to the liquid phase, test compounds which inhibit complex or which disrupt preformed complexes can be identified.

In an alternate embodiment of the invention, a homogeneous assay can be used. In this approach, a preformed complex of the DP107 and DP178 peptides is prepared in which one of the binding partners is labeled, but the signal generated by the label is quenched due to complex formation (see, e.g., U.S. Pat. No. 4,109,496 by Rubenstein which utilizes this approach for immunoassays). The addition of a test substance that competes with and displaces one of the binding partners from the preformed complex will result in the generation of a signal above background. In this way, test substances which disrupt DP-107/DP-178 protein-protein interaction can be identified.

In an alternative screening assay, test compounds may be assayed for the their ability to disrupt a DP178/DP107 interaction, as measured immunometrically using an antibody specifically reactive to a DP107/DP178 complex (i.e., an antibody that recognizes neither DP107 nor DP178 individually). Such an assay acts as a competition assay, and is based on techniques well known to those of skill in the art.

The above competition assay may be described, by way of example, and not by way of limitation, by using the DP178 and M41Δ178 peptides and by assaying test compounds for the disruption of the complexes formed by these two peptides by immunometrically visualizing DP178/M41Δ178 complexes via the human recombinant Fab, Fab-d, as described, below, in the Example presented in Section 8. M41Δ178 is a maltose binding fusion protein containing a gp41 region having its DP178 domain deleted, and is described, below, in the Example presented in Section 8.

Utilizing such an assay, M411178 may be immobilized onto solid supports such as microtiter wells. A series of dilutions of a test compound may then be added to each M41Δ178-containing well in the presence of a constant concentration of DP-178 peptide. After incubation, at, for example, room temperature for one hour, unbound DP-178 and test compound are removed from the wells and wells are then incubated with the DP178/M41Δ178-specific Fab-d antibody. After incubation and washing, unbound Fab-d is removed from the plates and bound Fab-d is quantitated. A no-inhibitor control should also be conducted. Test compounds showing an ability to disrupt DP178/M41Δ178 complex formation are identified by their concentration-dependent decrease in the level of Fab-d binding.

A variation of such an assay may be utilized to perform a rapid, high-throughput binding assay which is capable of directly measuring DP178 binding to M41Δ178 for the determination of binding constants of the ligand of inhibitory constants for competitors of DP178 binding.

Such an assay takes advantage of accepted radioligand and receptor binding principles. (See, for example, Yamamura, H. I. et al., 1985, “Neurotransmitter Receptor Binding”, 2nd ed., Raven Press, NY.) As above, M41Δ178 is immobilized onto a solid support such as a microtiter well. DP178 binding to M41Δ178 is then quantitated by measuring the fraction of DP178 that is bound as ¹²⁵I-DP178 and calculating the total amount bound using a value for specific activity (dpm/μg peptide) determined for each labeled DP178 preparation. Specific binding to M41Δ178 is defined as the difference of the binding of the labeled DP178 preparation in the microtiter wells (totals) and the binding in identical wells containing, in addition, excess unlabeled DP178 (nonspecifics).

5.5 Pharmaceutical Formulations, Dosages and Modes of Administration

The peptides of the invention may be administered using techniques well known to those in the art. Preferably, agents are formulated and administered systemically. Techniques for formulation and administration may be found in “Remington's Pharmaceutical Sciences”, 18th ed., 1990, Mack Publishing Co., Easton, Pa. Suitable routes may include oral, rectal, transmucosal, or intestinal administration; parenteral delivery, including intramuscular, subcutaneous, intramedullary injections, as well as, intrathecal, direct intraventricular, intravenous, intraperitoneal, intranasal, or intraocular injections, just to name a few. For injection, the agents of the invention may be formulated in aqueous solutions, preferably in physiologically compatible buffers such as Hanks' solution, Ringer's solution, or physiological saline buffer. For such transmucosal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.

In instances wherein intracellular administration of the peptides of the invention or other inhibitory agents is preferred, techniques well known to those of ordinary skill in the art may be utilized. For example, such agents may be encapsulated into liposomes, then administered as described above. Liposomes are spherical lipid bilayers with aqueous interiors. All molecules present in an aqueous solution at the time of liposome formation are incorporated into the aqueous interior. The liposomal contents are both protected from the external microenvironment and, because liposomes fuse with cell membranes, are effectively delivered into the cell cytoplasm. Additionally, due to their hydrophobicity, when small molecules are to be administered, direct intracellular administration may be achieved.

Nucleotide sequences encoding the peptides of the invention which are to be intracellularly administered may be expressed in cells of interest, using techniques well known to those of skill in the art. For example, expression vectors derived from viruses such as retroviruses, vaccinia viruses, adeno-associated viruses, herpes viruses, or bovine papilloma viruses, may be used for delivery and expression of such nucleotide sequences into the targeted cell population. Methods for the construction of such vectors and expression constructs are well known. See, for example, Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Press, Cold Spring Harbor N.Y., and Ausubel et al., 1989, Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, NY.

With respect to HIV, peptides of the invention, particularly DP107 and DP178, may be used as therapeutics in the treatment of AIDS. In addition, the peptides may be used as prophylactic measures in previously uninfected individuals after acute exposure to an HIV virus. Examples of such prophylactic use of the peptides may include, but are not limited to, prevention of virus transmission from mother to infant and other settings where the likelihood of HIV transmission exists, such as, for example, accidents in health care settings wherein workers are exposed to HIV-containing blood products. The successful use of such treatments do not rely upon the generation of a host immune response directed against such peptides.

Effective dosages of the peptides of the invention to be administered may be determined through procedures well known to those in the art which address such parameters as biological half-life, bioavailability, and toxicity. Given the data presented below in Section 6, DP178, for example, may prove efficacious in vivo at doses required to achieve circulating levels of about 1 to about 10 ng per ml of peptide.

A therapeutically effective dose refers to that amount of the compound sufficient to result in amelioration of symptoms or a prolongation of survival in a patient. Toxicity and therapeutic efficacy of such compounds can be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., for determining the LD₅₀ (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index and it can be expressed as the ratio LD₅₀/ED₅₀. Compounds which exhibit large therapeutic indices are preferred. The data obtained from these cell culture assays and animal studies can be used in formulating a range of dosage for use in humans. The dosage of such compounds lies preferably within a range of circulating concentrations that include the ED50 with little or no toxicity. The dosage may vary within this range depending upon the dosage form employed and the route of administration utilized. For any compound used in the method of the invention, the therapeutically effective dose can be estimated initially from cell culture assays. A dose may be formulated in animal models to achieve a circulating plasma concentration range that includes the IC₅₀ (e.g., the concentration of the test compound which achieves a half-maximal inhibition of the fusogenic event, such as a half-maximal inhibition of viral infection relative to the amount of the event in the absence of the test compound) as determined in cell culture. Such information can be used to more accurately determine useful doses in humans. Levels in plasma may be measured, for example, by high performance liquid chromatography (HPLC).

The peptides of the invention may, further, serve the role of a prophylactic vaccine, wherein the host raises antibodies against the peptides of the invention, which then serve to neutralize HIV viruses by, for example, inhibiting further HIV infection.

Administration of the peptides of the invention as a prophylactic vaccine, therefore, would comprise administering to a host a concentration of peptides effective in raising an immune response which is sufficient to neutralize HIV, by, for example, inhibiting HIV ability to infect cells. The exact concentration will depend upon the specific peptide to be administered, but may be determined by using standard techniques for assaying the development of an immune response which are well known to those of ordinary skill in the art. The peptides to be used as vaccines are usually administered intramuscularly.

The peptides may be formulated with a suitable adjuvant in order to enhance the immunological response. Such adjuvants may include, but are not limited to mineral gels such as aluminum hydroxide; surface active substances such as lysolecithin, pluronic polyols, polyanions; other peptides; oil emulsions; and potentially useful human adjuvants such as BCG and Corynebacterium parvum. Many methods may be used to introduce the vaccine formulations described here. These methods include but are not limited to oral, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, and intranasal routes.

Alternatively, an effective concentration of polyclonal or monoclonal antibodies raised against the peptides of the invention may be administered to a host so that no uninfected cells become infected by HIV. The exact concentration of such antibodies will vary according to each specific antibody preparation, but may be determined using standard techniques well known to those of ordinary skill in the art. Administration of the antibodies may be accomplished using a variety of techniques, including, but not limited to those described in this section.

For all such treatments described above, the exact formulation, route of administration and dosage can be chosen by the individual physician in view of the patient's condition. (See e.g. Fingl et al., 1975, in “The Pharmacological Basis of Therapeutics”, Ch. 1 p1).

It should be noted that the attending physician would know how to and when to terminate, interrupt, or adjust administration due to toxicity, or to organ dysfunctions. Conversely, the attending physician would also know to adjust treatment to higher levels if the clinical response were not adequate (precluding toxicity). The magnitude of an administrated dose in the management of the oncogenic disorder of interest will vary with the severity of the condition to be treated and the route of administration. The dose and perhaps dose frequency, will also vary according to the age, body weight, and response of the individual patient. A program comparable to that discussed above may be used in veterinary medicine.

Use of pharmaceutically acceptable carriers to formulate the compounds herein disclosed for the practice of the invention into dosages suitable for systemic administration is within the scope of the invention. With proper choice of carrier and suitable manufacturing practice, the compositions of the present invention, in particular, those formulated as solutions, may be administered parenterally, such as by intravenous injection. The compounds can be formulated readily using pharmaceutically acceptable carriers well known in the art into dosages suitable for oral administration. Such carriers enable the compounds of the invention to be formulated as tablets, pills, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a patient to be treated.

Pharmaceutical compositions suitable for use in the present invention include compositions wherein the active ingredients are contained in an effective amount to achieve its intended purpose. Determination of the effective amounts is well within the capability of those skilled in the art, especially in light of the detailed disclosure provided herein.

In addition to the active ingredients, these pharmaceutical compositions may contain suitable pharmaceutically acceptable carriers comprising excipients and auxiliaries which facilitate processing of the active compounds into preparations which can be used pharmaceutically. The preparations formulated for oral administration may be in the form of tablets, dragees, capsules, or solutions.

The pharmaceutical compositions of the present invention may be manufactured in a manner that is itself known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping or lyophilizing processes.

Pharmaceutical formulations for parenteral administration include aqueous solutions of the active compounds in water-soluble form. Additionally, suspensions of the active compounds may be prepared as appropriate oily injection suspensions. Suitable lipophilic solvents or vehicles include fatty oils such as sesame oil, or synthetic fatty acid esters, such as ethyl oleate or triglycerides, or liposomes. Aqueous injection suspensions may contain substances which increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Optionally, the suspension may also contain suitable stabilizers or agents which increase the solubility of the compounds to allow for the preparation of highly concentrated solutions.

Pharmaceutical preparations for oral use can be obtained by combining the active compounds with solid excipient, optionally grinding a resulting mixture, and processing the mixture of granules, after adding suitable auxiliaries, if desired, to obtain tablets or dragee cores. Suitable excipients are, in particular, fillers such as sugars, including lactose, sucrose, mannitol, or sorbitol; cellulose preparations such as, for example, maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl-cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP). If desired, disintegrating agents may be added, such as the cross-linked polyvinyl pyrrolidone, agar, or alginic acid or a salt thereof such as sodium alginate.

Dragee cores are provided with suitable coatings. For this purpose, concentrated sugar solutions may be used, which may optionally contain gum arabic, talc, polyvinyl pyrrolidone, carbopol gel, polyethylene glycol, and/or titanium dioxide, lacquer solutions, and suitable organic solvents or solvent mixtures. Dyestuffs or pigments may be added to the tablets or dragee coatings for identification or to characterize different combinations of active compound doses.

Pharmaceutical preparations which can be used orally include push-fit capsules made of gelatin, as well as soft, sealed capsules made of gelatin and a plasticizer, such as glycerol or sorbitol. The push-fit capsules can contain the active ingredients in admixture with filler such as lactose, binders such as starches, and/or lubricants such as talc or magnesium stearate and, optionally, stabilizers. In soft capsules, the active compounds may be dissolved or suspended in suitable liquids, such as fatty oils, liquid paraffin, or liquid polyethylene glycols. In addition, stabilizers may be added.

6. EXAMPLE DP178 (SEQ ID:1) is a Potent Inhibitor of HIV-1 Infection

In this example, DP178 (SEQ ID:1) is shown to be a potent inhibitor of HIV-1 mediated CD-4⁺ cell-cell fusion and infection by cell free virus. In the fusion assay, this peptide completely blocks virus induced syncytia formation at concentrations of from 1-10 ng/ml. In the infectivity assay the inhibitory concentration is somewhat higher, blocking infection at 90 ng/ml. It is further shown that DP178 (SEQ ID:1) shows that the antiviral activity of DP178 (SEQ ID:1) is highly specific for HIV-1. Additionally, a synthetic peptide, DP-185 (SEQ ID:3), representing a HIV-1-derived DP178 homolog is also found to block HIV-1-mediated syncytia formation.

6.1. Materials and Methods 6.1.1. Peptide Synthesis

Peptides were synthesized using Fast Moc chemistry on an Applied Biosystems Model 431A peptide synthesizer. Generally, unless otherwise noted, the peptides contained amidated carboxy termini and acetylated amino termini. Amidated peptides were prepared using Rink resin (Advanced Chemtech) while peptides containing free carboxy termini were synthesized on Wang (p-alkoxy-benzyl-alcohol) resin (Bachem). First residues were double coupled to the appropriate resin and subsequent residues were single coupled. Each coupling step was followed by acetic anhydride capping. Peptides were cleaved from the resin by treatment with trifluoracetic acid. (TFA) (10 ml), H₂O (0.5 ml), thioanisole (0.5 ml), ethanedithiol (0.25 ml), and crystalline phenol (0.75 g). Purification was carried out by reverse phase HPLC. Approximately 50 mg samples of crude peptide were chromatographed on a Waters Delta Pak C18 column (19 mm×30 cm, 15μ spherical) with a linear gradient; H₂O/acetonitrile 0.1% TFA. Lyophilized peptides were stored desiccated and peptide solutions were made in water at about 1 mg/ml. Electrospray mass spectrometry yielded the following results: DP178 (SEQ ID:1):4491.87 (calculated 4491.94); DP-180 (SEQ ID:2):4491.45 (calculated 4491.94); DP-185 (SEQ ID:3):not done (calculated 4546.97).

6.1.2. Virus

The HIV-1_(LAI) virus was obtained from R. Gallo (Popovic, M. et al., 1984, Science 224:497-508) and propagated in CEM cells cultured in RPMI 1640 containing 10% fetal calf serum. Supernatant from the infected CEM cells was passed through a 0.2 μm filter and the infectious titer estimated in a microinfectivity assay using the AA5 cell line to support virus replication. For this purpose, 25 μl of serial diluted virus was added to 75 μl AA5 cells at a concentration of 2×10⁵/ml in a 96-well microtitre plate. Each virus dilution was tested in triplicate. Cells were cultured for eight days by addition of fresh medium every other day. On day 8 post infection, supernatant samples were tested for virus replication as evidenced by reverse transcriptase activity released to the supernatant. The TCID₅₀ was calculated according to the Reed and Muench formula (Reed, L. J. et al., 1938, Am. J. Hyg. 27:493-497). The titer of the HIV-1_(LAI) and HIV-1_(MN) stocks used for these studies, as measured on the AA5 cell line, was approximately 1.4×10⁶ and 3.8×10⁴ TCID₅₀/ml, respectively.

6.1.3. Cell Fusion Assay

Approximately 7×10⁴ Molt cells were incubated with 1×10⁴ CEM cells chronically infected with the HIV-1_(LAI) virus in 96-well plates (one-half area cluster plates; Costar, Cambridge, Mass.) in a final volume of 100 μl culture medium as previously described (Matthews, T. J. et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5428). Peptide inhibitors were added in a volume of 10 μl and the cell mixtures were incubated for 24 hr. at 37° C. At that time, multinucleated giant cells were estimated by microscopic examination at a 40× magnification which allowed visualization of the entire well in a single field.

6.1.4. Cell Free Virus Infection Assay

Synthetic peptides were incubated at 37° C. with either 247 TCID₅₀ (for experiment depicted in FIG. 2), or 62 TCID₅₀ (for experiment depicted in FIG. 3) units of HIV-1_(LAI) virus or 25 TCID₅₀ units of HIV-2_(NHZ) and CEM CD4⁺ cells at peptide concentrations of 0, 0.04, 0.4, 4.0, and 40 μg/ml for 7 days. The resulting reverse transcriptase (RT) activity in counts per minute was determined using the assay described, below, in Section 6.1.5. See, Reed, L. J. et al., 1938, Am. J. Hyg. 27: 493-497 for an explanation of TCID₅₀ calculations.

6.1.5. Reverse Transcriptase Assay

The micro-reverse transcriptase (RT) assay was adapted from Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). Supernatants from virus/cell cultures are adjusted to 1% Triton-X100. A 10 μl sample of supernatant was added to 50 μl of RT cocktail in a 96-well U-bottom microtitre plate and the samples incubated at 37° C. for 90 min. The RT cocktail contained 75 mM KCl, 2 mM dithiothreitol, 5 mM MgCl₂, 5 μg/ml poly A (Pharmacia, cat. No. 27-4110-01), 0.25 units/ml oligo dT (Pharmacia, cat. No. 27-7858-0.01), 0.05% NP40, 50 mM Tris-HCl, pH 7.8, 0.5 μM non-radioactive dTTP, and 10 μCi/ml ³²P-dTTP (Amersham, cat. No. PB.10167).

After the incubation period, 401 of reaction mixture was applied to a Schleicher and Schuell (S+S) NA45 membrane (or DE81 paper) saturated in 2×SSC buffer (0.3M NaCl and 0.003M sodium citrate) held in a S+S Minifold over one sheet of GB003 (S+S) filter paper, with partial vacuum applied. Each well of the minifold was washed four times with 200 μl 2×SSC, under full vacuum. The membrane was removed from the minifold and washed 2 more times in a pyrex dish with an excess of 2×SSC. Finally, the membrane was drained on absorbent paper, placed on Whatman #3 paper, covered with Saran wrap, and exposed to film overnight at −70° C.

6.2. Results 6.2.1. Peptide of Infected Cell-Induced Syncytia Formation

The initial screen for antiviral activity assayed peptides' ability to block syncytium formation induced by overnight co-cultivation of uninfected Molt4 cells with chronically HIV-1 infected CEM cells. The results of several such experiments are presented herein. In the first of these experiments, serial DP178 (SEQ ID:1) peptide concentrations between 10 μg/ml and 12.5 ng/ml were tested for blockade of the cell fusion process. For these experiments, CEM cells chronically infected with either HIV-1>, HIV-1_(MN), HIV-1_(RF), or HIV-1_(SF2) virus were cocultivated overnight with uninfected Molt 4 cells. The results (FIG. 4) show that DP178 (SEQ ID:1) afforded complete protection against each of the HIV-1 isolates down to the lowest concentration of DP178 (SEQ ID:1) used. For HIV-inhibition, the lowest concentration tested was 12.5 ng/ml; for all other HIV-1 viruses, the lowest concentration of DP178 (SEQ ID:1) used in this study was 100 ng/ml. A second peptide, DP-180 (SEQ ID:2), containing the same amino acid residues as DP178 (SEQ ID:1) but arranged in a random order exhibited no evidence of anti-fusogenic activity even at the high concentration of 40 μg/ml (FIG. 4). These observations indicate that the inhibitory effect of DP178 (SEQ ID:1) is primary sequence-specific and not related to non-specific peptide/protein interactions. The actual endpoint (i.e., the lowest effective inhibitory concentration) of DP178 inhibitory action is within the range of 1-10 ng/ml.

The next series of experiments involved the preparation and testing of a DP178 (SEQ ID:1) homolog for its ability to inhibit HIV-1-induced syncytia formation. As shown in FIG. 1, the sequence of DP-185 (SEQ ID:3) is slightly different from DP178 (SEQ ID:1) in that its primary sequence is taken from the HIV-1_(SF2) isolate and contains several amino acid differences relative to DP178 (SEQ ID:1) near the N terminus. As shown in FIG. 4, DP-185 (SEQ ID:3), exhibits inhibitory activity even at 312.5 ng/ml, the lowest concentration tested.

The next series of experiments involved a comparison of DP178 (SEQ ID:1) HIV-1 and HIV-2 inhibitory activity. As shown in FIG. 5, DP178 (SEQ ID:1) blocked HIV-1-mediated syncytia formation at peptide concentrations below 1 ng/ml. DP178 (SEQ ID:1) failed, however, to block HIV-2 mediated syncytia formation at concentrations as high as 10 g/ml. This striking 4 log selectivity of DP178 (SEQ ID:1) as an inhibitor of HIV-1-mediated cell fusion demonstrates an unexpected HIV-1 specificity in the action of DP178 (SEQ ID:1). DP178 (SEQ ID:1) inhibition of HIV-1-mediated cell fusion, but the peptide's inability to inhibit HIV-2 medicated cell fusion in the same cell type at the concentrations tested provides further evidence for the high degree of selectivity associated with the antiviral action of DP178 (SEQ ID:1).

6.2.2. Peptide Inhibition of Infection by Cell-Free Virus

DP178 (SEQ ID:1) was next tested for its ability to block CD-4⁺ CEM cell infection by cell free HIV-1 virus. The results, shown in FIG. 2, are from an experiment in which DP178 (SEQ ID:1) was assayed for its ability to block infection of CEM cells by an HIV-1_(LAI) isolate. Included in the experiment were three control peptides, DP-116 (SEQ ID:9), DP-125 (SEQ ID:8), and DP-118 (SEQ ID:10). DP-116 (SEQ ID:9) represents a peptide previously shown to be inactive using this assay, and DP-125 (SEQ ID:8; Wild, C. et al., 1992, Proc. Natl. Acad, Sci. USA 89:10,537) and DP-118 (SEQ ID:10) are peptides which have previously been shown to be active in this assay. Each concentration (0, 0.04, 0.4, 4, and 40 μg/ml) of peptide was incubated with 247 TCID₅₀ units of HIV-1_(LAI) virus and CEM cells. After 7 days of culture, cell-free supernatant was tested for the presence of RT activity as a measure of successful infection. The results, shown in FIG. 2, demonstrate that DP178 (SEQ ID:1) inhibited the de novo infection process mediated by the HIV-1 viral isolate at concentrations as low as 90 ng/ml (IC50=90 ng/ml). In contrast, the two positive control peptides, DP-125 (SEQ: ID:8) and DP-118 (SEQ ID:10), had over 60-fold higher IC50 concentrations of approximately 5 μg/ml.

In a separate experiment, the HIV-1 and HIV-2 inhibitory action of DP178 (SEQ ID:1) was tested with CEM cells and either HIV-1_(LAI) or HIV-2_(NHZ). 62 TCID₅₀ HIV-1_(LAI) or 25 GCID₅₀ HIV-2_(NHZ) were used in these experiments, and were incubated for 7 days. As may be seen in FIG. 3, DP178 (SEQ ID:1) inhibited HIV-1 infection with an IC50 of about 31 ng/ml. In contrast, DP178 (SEQ ID:1) exhibited a much higher IC50 for HIV-2_(NHZ), thus making DP178 (SEQ ID:1) two logs more potent as a HIV-1 inhibitor than a HIV-2 inhibitor. This finding is consistent with the results of the fusion inhibition assays described, above, in Section 6.2.1, and further supports a significant level of selectivity (i.e., for HIV-1 over HIV-2).

7. EXAMPLE The HIV-1 Inhibitor, DP178 (SEQ ID:1) is Non-Cytotoxic

In this Example, the 36 amino acid synthetic peptide inhibitor DP178 (SEQ ID:1) is shown to be non-cytotoxic to cells in culture, even at the highest peptide concentrations (40 μg/ml) tested.

7.1. Materials and Methods

Cell proliferation and toxicity assay: Approximately 3.8×10⁵ CEM cells for each peptide concentration were incubated for 3 days at 37° C. in T25 flasks. Peptides tested were DP178 (SEQ ID:1) and DP-116 (SEQ ID:9), as described in FIG. 1. Peptides were synthesized as described, above, in Section 6.1. The concentrations of each peptide used were 0, 2.5, 10, and 40 μg/ml. Cell counts were taken at incubation times of 0, 24, 48, and 72 hours.

7.2. Results

Whether the potent HIV-1 inhibitor DP178 (SEQ ID:1) exhibited any cytotoxic effects was assessed by assaying the peptide's effects on the proliferation and viability of cells in culture. CEM cells were incubated in the presence of varying concentrations of DP178 (SEQ ID:1), and DP-116 (SEQ ID:9), a peptide previously shown to be ineffective as a HIV inhibitor (Wild, C. et al., 1992, Proc. Natl. Acad. Sci. USA 89:10,537-10,541). Additionally, cells were incubated in the absence of either peptide.

The results of the cytotoxicity study demonstrate that DP178 (SEQ ID:1) exhibits no cytotoxic effects on cells in culture. As can be seen, below, in Table XXIV, even the proliferation and viability characteristics of cells cultured for 3 days in the presence of the highest concentration of DP178 (SEQ ID:1) tested (40 μg/ml) do not significantly differ from the DP-116 (SEQ ID:9) or the no-peptide controls. The cell proliferation data is also represented in graphic form in FIG. 6. As was demonstrated in the Working Example presented above in Section 6, DP178 (SEQ ID:1) completely inhibits HIV-1 mediated syncytia formation at peptide concentrations between 1 and 10 ng/ml, and completely inhibits cell-free viral infection at concentrations of at least 90 ng/ml. Thus, this study demonstrates that even at peptide concentrations greater than 3 log higher than the HIV inhibitory dose, DP178 (SEQ ID:1) exhibits no cytotoxic effects.

TABLE XXIV % Viability Peptide at time (hours) Peptide Concentration μg/ml 0 24 48 72 DP178 40 98 97 95 97 (SEQ 10 98 97 98 98 ID:1) 2.5 98 93 96 96 DP116 40 98 95 98 97 (SEQ 10 98 95 93 98 ID:9) 2.5 98 96 98 99 No 0 98 97 99 98 Peptide

8. EXAMPLE The Interaction of DP178 and DP107

Soluble recombinant forms of gp41 used in the example described below provide evidence that the DP178 peptide associates with a distal site on gp41 whose interactive structure is influenced by the DP107 leucine zipper motif. A single mutation disrupting the coiled-coil structure of the leucine zipper domain transformed the soluble recombinant gp41 protein from an inactive to an active inhibitor of HIV-1 fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107, determinant. The results also indicate that the anti-HIV activity of various gp41 derivatives (peptides and recombinant proteins) may be due to their ability to form complexes with viral gp41 and interfere with its fusogenic process.

8.1. Materials and Methods 8.1.1. Construction of Fusion proteins and GP41 Mutants

Construction of fusion proteins and mutants shown in FIG. 7 was accomplished as follows: the DNA sequence corresponding to the extracellular domain of gp41 (540-686) was cloned into the Xmn I site of the expression vector pMal-p2 (New England Biolab) to give M41. The gp41 sequence was amplified from pgtat (Malim et al., 1988, Nature 355: 181-183) by using polymerase chain reaction (PCR) with upstream primer 5′-ATGACGCTGACGGTACAGGCC-3′ (SEQ ID NO:11) (primer A) and downstream primer 5′-TGACTAAGCTTAATACCACAGCCAATTTGTTAT-3′ (SEQ ID NO:12)(primer B). M41-P was constructed by using the T7-Gen in vitro mutagenesis kit from United States Biochemicals (USB) following the supplier's instructions. The mutagenic primer (5′-GGAGCTGCTTGGGGCCCCAGAC-3′ (SEQ ID NO:13) introduces an Ile to Pro mutation in M41 at position 578. M41Δ107, from which the DP-107 region has been deleted, was made using a deletion mutagenic primer 5′-CCAAATCCCCAGGAGCTGCTCGAGCTGCACTATACCAGAC-3′ (SEQ ID NO:14) (primer C) following the USB T7-Gen mutagenesis protocol. M41Δ178, from which the DP-178 region has been deleted, was made by cloning the DNA fragment corresponding to gp41 amino acids 540-642 into the Xmn I site of pMal-p2. Primer A and 5′-ATAGCTTCTAGATTAATTGTTAATTTCTCTGTCCC-3′ (SEQ ID NO:15) (primer D) were used in the PCR with the template pgtat to generate the inserted DNA fragments. M41-P was used as the template with primer A and D in PCR to generate M41-PΔ178. All inserted sequences and mutated residues were checked by restriction enzyme analysis and confirmed by DNA sequencing.

8.1.2. Purification and Characterization of Fusion Proteins

The fusion proteins were purified according to the protocol described in the manufacturer's brochure of protein fusion and purification systems from New England Biolabs (NEB). Fusion proteins (10 ng) were analyzed by electrophoresis on 8% SDS polyacrylamide gels. Western blotting analysis was performed as described by Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, 2d Ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., Ch. 18, pp. 64-75. An HIV-1 positive serum diluted 1000-fold, or a human Fab derived from repertoire cloning was used to react with the fusion proteins. The second antibody was HRP-conjugated goat antihuman Fab. An ECL Western blotting detection system (Amersham) was used to detect the bound antibody. A detailed protocol for this detection system was provided by the manufacturer. Rainbow molecular weight markers (Amersham) were used to estimate the size of fusion proteins.

8.1.3. Cell Fusion Assays for Anti-HIV Activity

Cell fusion assays were performed as previously described (Matthews et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5481). CEM cells (7×10⁴) were incubated with HIV-1_(IIIB) chronically infected CEM cells (104) in 96-well flat-bottomed half-area plates (Costar) in 100 μl culture medium. Peptide and fusion proteins at various concentrations in 10 μl culture medium were incubated with the cell mixtures at 37° C. for 24 hours. Multinucleated syncytia were estimated with microscopic examination. Both M41 and M41-P did not show cytotoxicity at the concentrations tested and shown in FIG. 8.

Inhibition of HIV-1 induced cell-cell fusion activity was carried out in the presence of 10 nM DP178 and various concentrations of M41Δ178 or M41-PΔ178 as indicated in FIG. 9. There was no observable syncytia in the presence of 10 nM DP178. No peptide or fusion protein was added in the control samples.

8.1.4. Elisa Analysis of DP178 Binding to the Leucine Zipper Motif of GP41

The amino acid sequence of DP178 used is: YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF. For enzyme linked immunoassay (ELISA), M41Δ178 or M41-PΔ178 (5 μg/ml) in 0.1M NaHCO₃, pH 8.6, were coated on 96 wells Linbro ELISA plates (Flow Lab, Inc.) overnight. Each well was washed three times with distilled water then blocked with 3% bovine serum albumin (BSA) for 2 hours. After blocking, peptides with 0.5% BSA in TBST (40 mM Tris-HCl pH7.5, 150 mM NaCl, 0.05% Tween 20) were added to the ELISA plates and incubated at room temperature for 1 hour. After washing three times with TBST, Fab-d was added at a concentration of 10 ng/ml with 0.5% BSA in TBST. The plates were washed three times with TBST after incubation at room temperature for 1 hour. Horse radish peroxidase (HRP) conjugated goat antihuman Fab antiserum at a 2000 fold dilution in TBST with 0.5% BSA was added to each well and incubated at room temperature for 45 minutes. The plates were then washed four times with TBST. The peroxidase substrate o-phenylene diamine (2.5 mg/ml) and 0.15% H₂O₂ were added to develop the color. The reaction was stopped with an equal volume of 4.5 N H₂SO₄ after incubation at room temperature for 10 minutes. The optical density of the stopped reaction mixture was measured with a micro plate reader (Molecular Design) at 490 nm. Results are shown in FIG. 10.

8.2. Results 8.2.1. The Expression and Characterization of the Ectodomain of gp41

As a step toward understanding the roles of the two helical regions in gp41 structure and function, the ectodomain of gp41 was expressed as a maltose binding fusion protein (M41) (FIG. 7). The fusogenic peptide sequence at the N-terminal of gp41 was omitted from this recombinant protein and its derivatives to improve solubility. The maltose binding protein facilitated purification of the fusion proteins under relatively mild, non-denaturing conditions. Because the M41 soluble recombinant gp41 was not glycosylated, lacked several regions of the transmembrane protein (i.e., the fusion peptide, the membrane spanning, and the cytoplasmic domains), and was expressed in the absence of gp120, it was not expected to precisely reflect the structure of native gp41 on HIV-1 virions. Nevertheless, purified M41 folded in a manner that preserved certain discontinuous epitopes as evidenced by reactivity with human monoclonal antibodies, 98-6, 126-6, and 50-69, previously shown to bind conformational epitopes on native gp41 expressed in eukaryotic cells (Xu et al., 1991, J. Virol. 65: 4832-4838; Chen, 1994, J. Virol. 68:2002-2010). Thus, at least certain regions of native gp41 defined by these antibodies appear to be reproduced in the recombinant fusion protein M41. Furthermore, M41 reacted with a human recombinant Fab (Fab-d) that recognizes a conformational epitope on gp41 and binds HIV-1 virions as well as HIV-1 infected cells but not uninfected cells as analyzed by FACS. Deletion of either helix motif, i.e., DP107 or DP178, of the M41 fusion protein eliminated reactivity with Fab-d. These results indicate that both helical regions, separated by 60 amino acids in the primary sequence, are required to maintain the Fab-d epitope.

8.2.2. Anti-HIV Activity of the Recombinant Ectodomain of GP41

The wild type M41 fusion protein was tested for anti-HIV-1 activity. As explained, supra, synthetic peptides corresponding to the leucine zipper (DP107) and the C-terminal putative helix (DP178) show potent anti-HIV activity. Despite inclusion of both these regions, the recombinant M41 protein did not affect HIV-1 induced membrane fusion at concentrations as high as 50 μM (Table XXV, below).

TABLE XXV DISRUPTION OF THE LEUCINE ZIPPER OF GP41 FREES THE ANTI-HIV MOTIF DP107 DP178 M41 M41-P M41-PΔ178 Cell fusion 1 μM  1 nM >50 μM 83 nM >50 μM (IC₉₀) Fab-D — — 3.5 × 10⁻⁹ 2.5 × 10⁻⁸ — binding (k_(D)) HIV infec- 1 μM 80 nM >16 μM 66 nM  >8 μM tivity (IC₉₀)

-   -   The affinity constants of Fab-d binding to the fusion proteins         were determined using a protocol described by B. Friguet et al.,         1985, J. Immunol. Method. 77:305-319.     -   −=No detectable binding of Fab-d to the fusion proteins.     -   Antiviral Infectivity Assays. 20 μl of serially diluted virus         stock was incubated for 60 minutes at ambient temperature with         20 μl of the indicated concentration of purified recombinant         fusion protein in RPMI 1640 containing 10% fetal bovine serum         and antibiotics in a 96-well microtiter plate. 20 μl of CEM4         cells at 6×10⁵ cells/ml were added to each well, and cultures         were incubated at 37° C. in a humidified CO₂ incubator. Cells         were cultured for 9 days by the addition of fresh medium every 2         to 3 days. On days 5, 7, and 9 postinfection, supernatant         samples were assayed for reverse transcriptase (RT) activity, as         described below, to monitor viral replication. The 50% tissue         culture infectious dose (TCID₅₀) was calculated for each         condition according to the formula of Reed & Muench, 1937,         Am. J. Hyg. 27:493-497. RT activity was determined by a         modification of the published methods of Goff et al., 1981, J.         Virol. 38:239-248 and Willey et al., 1988, J. Virol. 62:139-147         as described in Chen et al., 1993, AIDS Res. Human Retroviruses         9:1079-1086.

Surprisingly, a single amino acid substitution, proline in place of isoleucine in the middle of the leucine zipper motif, yielded a fusion protein (M41-P) which did exhibit antiviral activity (Table XXV and FIG. 8). As seen in Table XXV, M41-P blocked syncytia formation by 90% at approximately 85 nM and neutralized HIV-1_(IIIB) infection by 90% at approximately 70 nM concentrations. The anti-HIV-1 activity of M41-P appeared to be mediated by the C-terminal helical sequence since deletion of that region from M41-P yielded an inactive fusion protein, M41Δ178 (Table XXV). This interpretation was reinforced by experiments demonstrating that a truncated fusion protein lacking the DP178 sequence, M41178, abrogated the potent anti-fusion activity of the DP178 peptide in a concentration-dependent manner (FIG. 9). The same truncated fusion protein containing the proline mutation disrupting the leucine zipper, M41-PΔ178, was not active in similar competition experiments (FIG. 9). The results indicate that the DP178 peptide associates with a second site on gp41 whose interactive structure is dependent on a wild type leucine zipper sequence. A similar interaction may occur within the wild type fusion protein, M41, and act to form an intramolecular clasp which sequesters the DP178 region, making it unavailable for anti-viral activity.

A specific association between these two domains is also indicated by other human monoclonal Fab-d studies. For example, Fab-d failed to bind either the DP178 peptide or the fusion protein M41178, but its epitope was reconstituted by simply mixing these two reagents together (FIG. 10). Again, the proline mutation in the leucine zipper domain of the fusion protein, M41-PΔ178, failed to reconstitute the epitope in similar mixing experiments.

9. EXAMPLE Method for Computer-Assisted Identification of DP107-like and DP178-Like Sequences

A number of known coiled-coil sequences have been well described in the literature and contain heptad repeat positioning for each amino acid. Coiled-coil nomenclature labels each of seven amino acids of a heptad repeat A through G, with amino acids A and D tending to be hydrophobic positions. Amino acids E and G tend to be charged. These four positions (A, D, E, and G) form the amphipathic backbone structure of a monomeric alpha-helix. The backbones of two or more amphipathic helices interact with each other to form di-, tri-, tetrameric, etc., coiled-coil structures. In order to begin to design computer search motifs, a series of well characterized coiled coils were chosen including yeast transcription factor GCN4, Influenza Virus hemagglutinin loop 36, and human proto-oncogenes c-Myc, c-Fos, and c-Jun. For each peptide sequence, a strict homology for the A and D positions, and a list of the amino acids which could be excluded for the B, C, E, F, and G positions (because they are not observed in these positions) was determined. Motifs were tailored to the DP107 and DP178 sequences by deducing the most likely possibilities for heptad positioning of the amino acids of HIV-1 Bru DP-107, which is known to have coiled-coil structure, and HIV-1 Bru DP178, which is still structurally undefined. The analysis of each of the sequences is contained in FIG. 12. For example, the motif for GCN4 was designed as follows:

-   1. The only amino acids (using standard single letter amino acid     codes) found in the A or D positions of GCN4 were [LMNV]. -   2. All amino acids were found at B, C, E, F, and G positions except     {CFGIMPTW}. -   3. The PESEARCH motif would, therefore, be written as follows:

[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)−

[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)−

[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)−

[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)

Translating or reading the motif: “at the first A position either L, M, N, or V must occur; at positions B and C (the next two positions) accept everything except C, F, G. I, M, P, T, or W; at the D position either L, M, N, or V must occur; at positions E, F, and G (the next 3 positions) accept everything except C, F, G, I, M, P, T, or W.” This statement is contained four times in a 28-mer motif and five times in a 35-mer motif. The basic motif key then would be: [LMNV]−{CFGIMPTW}. The motif keys for the remaining well described coiled-coil sequences are summarized in FIG. 12.

The motif design for DP107 and DP178 was slightly different than the 28-mer model sequences described above due to the fact that heptad repeat positions are not defined and the peptides are both longer than 28 residues. FIG. 13 illustrates several possible sequence alignments for both DP107 and DP178 and also includes motif designs based on 28-mer, 35-mer, and full-length peptides. Notice that only slight differences occur in the motifs as the peptides are lengthened. Generally, lengthening the base peptide results in a less stringent motif. This is very useful in broadening the possibilities for identifying DP107- or DP-178-like primary amino acid sequences referred to in this document as “hits”.

In addition to making highly specific motifs for each type peptide sequence to be searched, it is also possible to make “hybrid” motifs. These motifs are made by “crossing” two or more very stringent motifs to make a new search algorithm which will find not only both “parent” motif sequences but also any peptide sequences which have similarities to one, the other, or both “parents”. For example, in FIG. 14 the “parent” sequence of GCN4 is crossed with each of the possible “parent” motifs of DP-107. Now the hybrid motif must contain all of the amino acids found in the A and D positions of both parents, and exclude all of the amino acids not found in either parent at the other positions. The resulting hybrid from crossing GCN4 or [LMNV] {CFGIMPTW} and DP107 (28-mer with the first L in the D position) or [ILQT] {CDFIMPST}, is [ILMNQTV] {CFIMPT}. Notice that now only two basic hybrid motifs exist which cover both framing possibilities, as well as all peptide lengths of the parent DP-107 molecule. FIG. 15 represents the “hybridizations” of GCN4 with DP-178. FIG. 16 represents the “hybridizations” of DP107 and DP178. It is important to keep in mind that the represented motifs, both parent and hybrid, are motif keys and not the depiction of the full-length motif needed to actually do the computer search.

Hybridizations can be performed on any combination of two or more motifs. FIG. 17 summarizes several three-motif hybridizations including GCN4, DP107 (both frames), and DP178 (also both frames). Notice that the resulting motifs are now becoming much more similar to each other. In fact, the first and third hybrid motifs are actually subsets of the second and fourth hybrid motifs respectively. This means that the first and third hybrid motifs are slightly more stringent than the second and fourth. It should also be noted that with only minor changes in these four motifs, or by hybridizing them, a single motif could be obtained which would find all of the sequences. However, it should be remembered that stringency is also reduced. Finally, the most broad-spectrum and least-stringent hybrid motif is described in FIG. 18 which summarizes the hybridization of GCN4, DP107 (both frames), DP178 (both frames), c-Fos, c-Jun, c-Myc, and Flu loop 36.

A special set of motifs was designed based on the fact that DP-178 is located only approximately ten amino acids upstream of the transmembrane spanning region of gp41 and just C-terminal to a proline which separates DP107 and DP178. It has been postulated that DP178 may be an amphipathic helix when membrane associated, and that the proline might aid in the initiation of the helix formation. The same arrangement was observed in Respiratory Syncytial Virus; however, the DP178-like region in this virus also had a leucine zipper just C-terminal to the proline. Therefore, N-terminal proline-leucine zipper motifs were designed to analyze whether any other viruses might contain this same pattern. The motifs are summarized in FIG. 19.

The PC/Gene protein database contains 5879 viral amino acid sequences (library file PVIRUSES; CD-ROM release 11.0). Of these, 1092 are viral enveloped or glycoprotein sequences (library file PVIRUSE1). Tables V through XIV contain lists of protein sequence names and motif hit locations for all the motifs searched.

10. EXAMPLE Computer-Assisted Identification of DP107 and DP178-Like Sequences in Human Immunodeficiency Virus

FIG. 20 represents search results for HIV-1 BRU isolate gp41 (PC/Gene protein sequence PENV_HV1BR). Notice that the hybrid motif which crosses DP-107 and DP-178 (named 107×178×4; the same motif as found in FIG. 16 found three hits including amino acids 550-599, 636-688, and 796-823. These areas include DP-107 plus eight N-terminal and four C-terminal amino acids; DP178 plus seven N-terminal and ten C-terminal amino acids; and an area inside the transmembrane region (cytoplasmic). FIG. 20 also contains the results obtained from searching with the motif named ALLMOTI5, for which the key is found in FIG. 17 ({CDGHP} {CFP}×5). This motif also found three hits including DP107 (amino acids 510-599), DP178 (615-717), and a cytoplasmic region (772-841). These hits overlap the hits found by the motif 107×178×4 with considerable additional sequences on both the amino and carboxy termini. This is not surprising in that 107×178×4 is a subset of the ALLMOTI5 hybrid motif. Importantly, even though the stringency of ALLMOTI5 is considerably less than 107×178×4, it still selectively identifies the DP107 and DP178 regions of gp41 shown to contain sequences for inhibitory peptides of HIV-1. The results of these two motif searches are summarized in Table V under the PC/Gene protein sequence name PENV HV1BR. The proline-leucine zipper motifs also gave several hits in HIV-1 BRU including 503-525 which is at the very C-terminus of gp120, just upstream of the cleavage site (P7LZIPC and P12LZIPC); and 735-768 in the cytoplasmic domain of gp41 (P23LZIPC). These results are found in Tables VIII, IX, and X under the same sequence name as mentioned above. Notice that the only area of HIV-1 BRU which is predicted by the Lupas algorithm to contain a coiled-coil region, is from amino acids 635-670. This begins eight amino acids N-terminal to the start and ends eight amino acids N-terminal to the end of DP178. DP107, despite the fact that it is a known coiled coil, is not predicted to contain a coiled-coil region using the Lupas method.

11. EXAMPLE Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Human Respiratory Syncytial Virus

FIG. 21 represents search results for Human Respiratory Syncytial Virus (RSV; Strain A2) fusion glycoprotein F1 (PC/Gene protein sequence name PVGLF_HRSVA). Motif 107×178×4 finds three hits including amino acids 152-202, 213-243, and 488-515. The arrangement of these hits is similar to what is found in HIV-1 except that the motif finds two regions with similarities to DP-178, one just downstream of what would be called the DP107 region or amino acids 213-243, and one just upstream of the transmembrane region (also similar to DP178) or amino acids 488-515. Motif ALLMOTI5 also finds three areas including amino acids 116-202, 267-302, and 506-549. The proline-leucine zipper motifs also gave several hits including amino acids 205-221 and 265-287 (P1LZIPC 265-280, P12LZIPC), and 484-513 (P7LZIPC and P12LZIPC 484-506, P23LZIPC). Notice that the PLZIP motifs also identify regions which share location similarities with DP-178 of HIV-1.

12. EXAMPLE Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Simian Immunodeficiency Virus

Motif hits for Simian immunodeficiency Virus gp41 (AGM3 isolate; PC/Gene protein sequence name PENV_SIVAG) are shown in FIG. 22. Motif 107×178×4 finds three hits including amino acids 566-593, 597-624, and 703-730. The first two hits only have three amino acids between them and could probably be combined into one hit from 566-624 which would represent a DP107-like hit. Amino acids 703 to 730 would then represent a DP178-like hit. ALLMOTI5 also finds three hits including amino acids 556-628 (DP107-like), 651-699 (DP178-like), and 808-852 which represents the transmembrane spanning region. SIV also has one region from 655-692 with a high propensity to form a coiled coil as predicted by the Lupas algorithm. Both 107×178×4 and ALLMOTI5 motifs find the same region. SIV does not have any PLZIP motif hits in gp41.

The identification of DP178/DP107 analogs for a second SIV isolate (MM251) is demonstrated in the Example presented, below, in Section 19.

13. EXAMPLE Computer-Assisted Identification of DP107-Like and DP178 Like Sequences in Canine Distemper Virus

Canine Distemper Virus (strain Onderstepoort) fusion glycoprotein F1 (PC/Gene Protein sequence name PVGLF_CDVO) has regions similar to Human RSV which are predicted to be DP107-like and DP178-like (FIG. 23). Motif 107×178×4 highlights one area just C-terminal to the fusion peptide at amino acids 252-293. Amino acids 252-286 are also predicted to be coiled coil using the Lupas algorithm. Almost 100 amino acids C-terminal to the first region is a DP178-like area at residues 340-367. ALLMOTI5 highlights three areas of interest including: amino acids 228-297, which completely overlaps both the Lupas prediction and the DP107-like 107×178×4 hit; residues 340-381, which overlaps the second 107×178×4 hit; and amino acids 568-602, which is DP178-like in that it is located just N-terminal to the transmembrane region. It also overlaps another region (residues 570-602) predicted by the Lupas method to have a high propensity to form a coiled coil. Several PLZIP motifs successfully identified areas of interest including P6 and P12LZIPC which highlight residues 336-357 and 336-361 respectively; P1 and P12LZIPC which find residues 398-414; and P12 and P23LZIPC which find residues 562-589 and 562-592 respectively.

14. EXAMPLE Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Newcastle Disease Virus

FIG. 24 shows the motif hits found in Newcastle Disease Virus (strain Australia-Victoria/32; PC Gene protein sequence name PVGLF_NDVA). Motif 107×178×4 finds two areas including a DP107-like hit at amino acids 151-178 and a DP178-like hit at residues 426-512. ALLMOTI5 finds three areas including residues 117-182, 231-272, and 426-512. The hits from 426-512 include a region which is predicted by the Lupas method to have a high coiled-coil propensity (460-503). The PLZIP motifs identify only one region of interest at amino acids 273-289 (P1 and 12LZIPC).

15. EXAMPLE Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Human Parainfluenza Virus

Both motifs 107×178×4 and ALLMOTI5 exhibit DP107-like hits in the same region, 115-182 and 117-182 respectively, of Human Parainfluenza Virus (strain NIH 47885; PC/Gene protein sequence name PVGLF_p13H4; (FIG. 25). In addition, the two motifs have a DP178-like hit just slightly C-terminal at amino acids 207-241. Both motifs also have DP178-like hits nearer the transmembrane region including amino acids 457-497 and 462-512 respectively. Several PLZIP motif hits are also observed including 283-303 (P5LZIPC), 283-310 (P12LZIPC), 453-474 (P6LZIPC), and 453-481 (P23LZIPC). The Lupas algorithm predicts that amino acids 122-176 may have a propensity to form a coiled-coil.

16. EXAMPLE Computer-Assisted Identification of DP107-Like and DP178-Like Sequences of Influenza a Virus

FIG. 26 illustrates the Lupas prediction for a coiled coil in Influenza A Virus (strain A/Aichi/2/68) at residues 379-436, as well as the motif hits for 107×178×4 at amino acids 387-453, and for ALLMOTI5 at residues 380-456. Residues 383-471 (38-125 of HA2) were shown by Carr and Kim to be an extended coiled coil when under acidic pH (Carr and Kim, 1993, Cell 73: 823-832). The Lupas algorithm predicts a coiled-coil at residues 379-436. All three methods successfully predicted the region shown to actually have coiled-coil structure; however, ALLMOTI5 predicted the greatest portion of the 88 residue stretch.

17. EXAMPLE Potential Respiratory Syncytial Virus DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, respiratory syncytial virus (RSV) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 11, above, were tested for anti-RSV activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.

17.1 Materials and Methods

Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptides were synthesized according to the methods described, above, in Section 6.1. Peptide concentrations were determined from A₂₈₀ using Edlehoch's method (1967, Biochemistry 6:1948).

Anti-RSV antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of HEp2 cells acutely infected with RSV (i.e., cells which are infected with a multiplicity of infection of greater than 2) to fuse and cause syncytial formation on a monolayer of uninfected an uninfected line of Hep-2 cells. The lower the observed level of fusion, the greater the antiviral activity of the peptide was determined to be.

Uninfected confluent monolayers of Hep-2 cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics (penicillin/streptomycin; Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.

To prepare Hep2 cells for addition to uninfected cells, cultures of acutely infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected Hep-2 cells.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Hep-2 cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 100 acutely RSV-infected Hep2 cells per well. Wells were then incubated at 37° C. for 48 hours.

After incubation, cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of either Crystal Violet stain or XTT. With respect to Crystal Violet, approximately 50 μl 0.25% Crystal Violet stain in methanol were added to each well. The wells were rinsed immediately, to remove excess stain, and were allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

With respect to XTT (2,3-bis[2-Methoxy-4-nitro-5-sulfophenyl]-2H-tetrazolium-5-carboxyanilide inner salt), 50 μl XTT (1 mg/ml in RPMI buffered with 100 mM HEPES, pH 7.2-7.4, plus 5% DMSO) were added to each well. The OD_(450/690) was measured (after blanking against growth medium without cells or reagents, and against reagents) according to standard procedures.

Peptides: The peptides characterized in the study presented herein were:

1) peptides T-142 to T-155, as shown in FIGS. 27A-B, and peptides T-22 to T-27, T-68, T-334 and T-371 to T-375 and T-575, as shown in FIG. 27C;

2) peptides T-120 to T-141 and T-576, as shown in FIGS. 27D-E, and peptides T-12, T-13, T-15, T-19, T-28 to T-30, T-66, T-69, T-70 and T-576, as shown in FIG. 27F; and

3) peptides T-67 and T-104 to T-119, as shown in FIGS. 28A-B, and peptides T-71, T-384, T-613 to T-617, T-662 to T-676 and T-730, as shown in FIG. 28C.

The peptides of group 1 represent portions of the RSV F2 protein DP178/107-like region. The peptides of group 2 represent portions of the RSV F1 protein DP107-like region. The peptides of groups 3 represent portions of the RSV F1 protein DP178-like region.

Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used. The IC₅₀ data for each peptide represents the average of several experiments conducted utilizing that peptide.

17.2 Results

The data summarized in FIGS. 27A-C and 28A-C represent antiviral and structural information obtained from peptides derived from the RSV F2 DP178/DP107-like F2 region (FIGS. 27A-C), the RSV F1 DP-107-like region (FIGS. 27D-F) and the RSV DP178-like F1 region (FIGS. 28A-C)

As shown in FIGS. 27A-F, a number of the RSV DP178/DP107-like peptides exhibited a detectable level of antiviral activity. Peptides from the RSV DP178/DP 107-like F2 region (FIGS. 27A-C), for example, T-142 to T-145 and T-334 purified peptides, exhibited detectable levels of antiviral activity, as evidenced by their IC₅₀ values. Further, a number of RSV F1 DP107-like peptides (FIGS. 27D-F) exhibited a sizable level of antiviral activity as purified peptides, including, for example, peptides T-124 to T-127, T-131, T-135 and T-137 to T-139, as demonstrated by their low IC₅₀ values. In addition, CD analysis (FIGS. 27B, 27E) reveals that many of the peptides exhibit some detectable level of helical structure.

The results summarized in FIGS. 28A-C demonstrate that a number of DP178-like purified peptides exhibit a range of potent anti-viral activity. These peptides include, for example, T-67, T-104, T-105 and T-107 to T-119, as listed in FIGS. 28A-B, and T-665 to T-669 and T-671 to T-673, as listed in FIG. 28C. In addition, some of the DP178-like peptides exhibited some level of helicity.

Thus, the computer assisted searches described, hereinabove, successfully identified viral peptide domains that represent highly promising anti-RSV antiviral compounds.

18. EXAMPLE Potential Human Parainfluenza Virus Type 3 DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, human parainfluenza virus type 3 (HPIV3) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 15, above, were tested for anti-HPIV3 activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.

18.1 Materials and Methods

Structural analyses: Structural analyses consisted of circular dichroism (CD) studies. The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A₂₈₀ using Edlehoch's method (1967, Biochemistry 6:1948).

Anti-HPIV3 antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of Hep2 cells chronically infected with HPIV3 to fuse and cause syncytial formation on a monolayer of an uninfected line of CV-1W cells. The more potent the lower the observed level of fusion, the greater the antiviral activity of the peptide.

Uninfected confluent monolayers of CV-1W cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics/antimycotics (Gibco BRL Life Technologies Cat. No. 15040-017) added at 1%, and glutamine added at 1%.

To prepare Hep2 cells for addition to uninfected cells, cultures of chronically infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected CV-1W cells.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected CV-1W cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 500 chronically HPIV3-infected Hep2 cells per well. Wells were then incubated at 37° C. for 24 hours.

On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

Alternatively, instead of Crystal Violet analysis, cells were assayed with XTT, as described, above, in Section 17.1.

Peptides: The peptides characterized in the study presented herein were:

-   1) Peptides 157 to 188, as shown in FIGS. 29A-C, and peptides T-38     to T-40, T-42 to T-46 and T-582, as shown in FIGS. 29D-E. These     peptides are derived from the DP107 region of the HPIV3 F1 fusion     protein (represented by HPF3 107, as shown in FIGS. 29A-B); and -   2) Peptides 189 to 210, as shown in FIGS. 30A-B, and T-269, T-626,     T-383 and T-577 to T-579, as shown in FIG. 30C. These peptides are     primarily derived from the DP178 region of the HPIV3 F1 fusion     protein (represented by HPF3 178, as shown in FIG. 30A). Peptide     T-626 contains two mutated amino acid residues. Additionally,     peptide T-577 represents F1 amino acids 65-100, T-578 represents F1     amino acids 207-242 and T-579 represents F1 amino acids 273-309.

Each peptide was tested at 2-fold serial dilutions ranging from 500 μg/ml to approximately 500 ng/ml. For each of the assays, a well containing no peptide was also used.

18.2 Results

The data summarized in FIGS. 29A-E and 30A-C represent antiviral and structural information obtained from peptides derived from the HPIV3 fusion protein DP107-like region (FIGS. 29A-E) and the HPIV3 fusion protein DP178-like region (FIGS. 30A-C).

As shown in FIGS. 29A-E, a number of the HPIV3 DP107-like peptides exhibited potent levels of antiviral activity. These peptides include, for example, peptides T-40, T-172 to T-175, T-178, T-184 and T-185.

CD analysis reveals that a number of the peptides exhibit detectable to substantial level of helical structure, which is summarized in FIG. 29C.

The results summarized in FIGS. 30A-C demonstrate that a number of the DP178-like peptides tested exhibit a range of anti-viral activity. These peptides include, for example, peptides 194 to 211, as evidence by their low IC₅₀ values. In fact, peptides 201 to 205 exhibit IC₅₀ values in the nanogram/ml range. In addition, many of the DP178-like peptides exhibited some level of helicity.

Thus, the computer assisted searches described, hereinabove, have successfully identified viral peptide domains that represent highly promising anti-HPIV3 antiviral compounds.

19. EXAMPLE Computer-Assisted Identification of DP178/DP107 Analogs in Simian Immunodeficiency Virus

FIG. 31 represents search results for SIV isolate MM251 (PC/Genes protein sequence PENV_SIVM2). Both 107×178×4 and ALLMOTI5 search motifs identified two regions with similarities to DP107 and/or DP178.

The peptide regions found by 107×178×4 were located at amino acid residues 156-215 and 277-289. The peptide regions found by ALLMOTI5 were located at amino acid residues 156-219 and 245-286. Both motifs, therefore, identify similar regions.

Interestingly, the first SIV peptide region (i.e., from amino acid residue 156 to approximately amino acid residue 219) correlates with a DP107 region, while the second region identified (i.e., from approximately amino acid residue 245 to approximately amino acid residue 289) correlates with the DP178 region of HIV. In fact, an alignment of SIV isolate MM251 and HIV isolate BRU, followed by a selection of the best peptide matches for HIV DP107 and DP178, reveals that the best matches are found within the peptide regions identified by the 107×178×4 and ALLMOTI5 search motifs.

It should be noted that a potential coiled-coil region at amino acid residues 242-282 is predicted by the Lupas program. This is similar to the observation in HIV in which the coiled-coil is predicted by the Lupas program to be in the DP178 rather than in the DP107 region. It is possible, therefore, that SIV may be similar to HIV in that it may contain a coiled-coil structure in the DP107 region, despite such a structure being missed by the Lupas algorithm. Likewise, it may be that the region corresponding to a DP178 analog in SIV may exhibit an undefined structure, despite the Lupas program's prediction of a coiled-coil structure.

20. EXAMPLE Computer-Assisted Identification of DP178/DP107 Analogs in Epstein-Barr Virus

The results presented herein describe the identification of DP178/DP107 analogs within two different Epstein-Barr Virus proteins. Epstein-Barr is a human herpes virus which is the causative agent of, for example, infectious mononucleosis (IM), and is also associated with nasopharyngeal carcinomas (NPC), Burkitt's lymphoma and other diseases. The virus predominantly exists in the latent form and is activated by a variety of stimuli.

FIG. 32 depicts the search motif results for the Epstein-Barr Virus (Strain B95-8; PC/Genes protein sequence PVGLB_EBV) glycoprotein gp110 precursor (gp115). The 107×178×4 motif identified two regions of interest, namely the regions covered by amino acid residues 95-122 and 631-658. One PZIP region was identified at amino acid residue 732-752 which is most likely a cytoplasmic region of the protein. The Lupas algorithm predicts a coiled-coil structure for amino acids 657-684. No ALLMOTI5 regions were identified.

FIG. 33 depicts the search motif results for the Zebra (or EB1) trans-activator protein (BZLF1) of the above-identified Epstein-Barr virus. This protein is a transcription factor which represents the primary mediator of viral reactivation. It is a member of the b-ZIP family of transcription factors and shares significant homology with the basic DNA-binding and dimerization domains of the cellular oncogenes c-fos and C/EBP. The Zebra protein functions as a homodimer.

Search results demonstrate that the Zebra protein exhibits a single region which is predicted to be either of DP107 or DP178 similarity, and is found between the known DNA binding and dimerization regions of the protein. Specifically, this region is located at amino acid residues 193-220, as shown in FIG. 33. The Lupas program predicted no coiled-coil regions.

21. EXAMPLE Computer-Assisted Identification of DP178/DP107 Analogs in Measles Virus

FIG. 34 illustrates the motif search results for the fusion protein F1 of measles virus, strain Edmonston (PC Gene® protein sequence PVGLF_MEASE), successfully identifying DP178/DP107 analogs.

The 107×178×4 motif identifies a single region at amino acid residues 228-262. The ALLMOTI5 search motif identifies three regions, including amino acid residues 116-184, 228-269 and 452-500. Three regions containing proline residues followed by a leucine zipper-like sequence were found beginning at proline residues 214, 286 and 451.

The Lupas program identified two regions it predicted had potential for coiled-coil structure, which include amino acid residues 141-172 and 444-483.

22. EXAMPLE Computer-Assisted Identification of DP178/DP107 Analogs in Hepatitis B Virus

FIG. 35 depicts the results of a PZIP motif search conducted on the Hepatitis B virus subtype AYW. Two regions of interest within the major surface antigen precursor S protein were identified. The first lies just C-terminal to the proposed fusion peptide of the major surface antigen (Hbs) which is found at amino acid residues 174-191. The second region is located at amino acid residues 233-267. The Lupas program predicts no coiled-coil repeat regions.

In order to test the potential anti-HBV antiviral activity of these D178/DP107 analog regions, peptides derived from area around the analog regions are synthesized, as shown in FIGS. 52A-B. These peptides represent one amino acid peptide “walks” through the putative DP178/DP107 analog regions. The peptides are synthesized according to standard Fmoc chemistry on Rinkamide MBHA resins to provide for carboxy terminal blockade (Chang, C.D. and Meinhofer, J., 1978, Int. J. Pept. Protein Res. 11:246-249; Fields, G. B. and Noble, R. L., 1990, Int. J. Pept. Protein Res. 35:161-214). Following complete synthesis, the peptide amino-terminus is blocked through automated acetylation and the peptide is cleaved with trifluoroacetic acid (TFA) and the appropriate scavengers (King, D. S. et al., 1990, Int. J. Pept. Res. 36:255-266). After cleavage, the peptide is precipitated with ether and dried under vacuum for 24 hours.

The anti-HBV activity of the peptides is tested by utilizing standard assays to determine the test peptide concentration required to cause an acceptable (e.g., 90%) decrease in the amount of viral progeny formed by cells exposed to an HBV viral inoculum. Candidate antivial peptides are further characterized in model systems such as wood chuck tissue culture and animal sytems, prior to testing on humans.

23. EXAMPLE Computer-Assisted Identification Of DP178/DP107 Analogs in Simian Mason-Pfizer monkey Virus

The results depicted herein illustrate the results of search motifs conducted on the Simian Mason-Pfizer monkey virus. The motifs reveal DP178/DP107 analogs within the enveloped (TM) protein GP20, as shown in FIG. 36.

The 107×178×4 motifs identifies a region at amino acid residues 422-470. The ALLMOTI5 finds a region at amino acid residues 408-474. The Lupas program predicted a coiled-coil structure a amino acids 424-459.

24. EXAMPLE Computer-Assisted Identification of DP178/DP107 Analogs in Bacterial Proteins

The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to sequences present in proteins of a variety of bacterial species.

FIG. 37 depicts the search motif results for the Pseudomonas aeruginosa fimbrial protein (Pilin). Two regions were identified by motifs 107×178×4 and ALLMOTI5. The regions located at amino acid residues 30-67 and 80-144 were identified by the 107×178×4 motif. The regions at amino acid residues 30-68 and 80-125 were identified by the ALLMOTI5.

FIG. 38 depicts the search motif results for the Pseudomonas gonorrhoeae fimbrial protein (Pilin). A single region was identified by both the 107×178×4 and the ALLMOTI5 motifs. The region located at amino acid residues 66-97 was identified by the 107×178×4 motif. The region located at amino acid residues 66-125 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.

FIG. 39 depicts the search motif results for the Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107×178×4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107×178×4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.

FIG. 40 depicts the search motif results for the Staphylococcus aureus toxic shock syndrome Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107×178×4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107×178×4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.

FIG. 41 summarizes the motif search results conducted on the Staphylococcus aureus enterotoxin Type E protein. These results demonstrate the successful identification of DP178/DP107 analogs corresponding to peptide sequences within this protein, as described below.

The ALLMOTI5 motif identified a region at amino acid residues 22-27. The 107×178×4 motif identified two regions, with the first at amino acid residues 26-69 and the second at 88-115. A P12LZIPC motif search identified two regions, at amino acid residues 163-181 and 230-250.

The Lupas program predicted a region with a high propensity for coiling at amino acid residues 25-54. This sequence is completely contained within the first region identified by both ALLMOTI5 and 107×178×4 motifs.

FIG. 42 depicts the search motif results conducted on a second Staphylococcus aureus toxin, enterotoxin A. Two regions were identified by the ALLMOTI5 motif, at amino acid residues 22-70 and amino acid residues 164-205. The 107×178×4 motif found two regions, the first at amino acid residues 26-69 and the second at amino acid residues 165-192. A P23LZIPC motif search revealed a region at amino acid residues 216-250. No coiled-coil regions were predicted by the Lupas program.

FIG. 43 shows the motif search results conducted on the E. coli heat labile enterotoxin A protein, demonstrating that identification of DP178/DP107 analogs corresponding to peptides located within this protein. Two regions were identified by the ALLMOTI5 motif, with the first residing at amino acid residues 55-115, and the second residing at amino acid residues 216-254. The 107×178×4 motif identified a single region at amino acid residues 78-105. No coiled-coil regions were predicted by the Lupas program.

25. EXAMPLE Computer-Assisted Identification of DP178/DP107 Analogs Within Various Human Proteins

The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to peptide sequences present within several different human proteins.

FIG. 44 illustrates the search motif results conducted on the human c-fos oncoprotein. The ALLMOTI5 motif identified a single region at amino acid residues 155-193. The 107×178×4 motif identified one region at amino acid residues 162-193. The Lupas program predicted a region at amino acid residues 148-201 to have coiled-coil structure.

FIG. 45 illustrates the search motif results conducted on the human lupus KU autoantigen protein P70. The ALLMOTI5 motif identified a single region at amino acid residues 229-280. The 107×178×4 motif identified one region at amino acid residues 235-292. The Lupas program predicted a region at amino acid residues 232-267 to have coiled-coil structure.

FIG. 46 illustrates the search motif results conducted on the human zinc finger protein 10. The ALLMOTI5 motif identified a single region at amino acid residues 29-81. The 107×178×4 motif identified one region at amino acid residues 29-56. A P23LZIPC motif search found a single region at amino acid residues 420-457. The Lupas program predicted no coiled-coil regions.

26. EXAMPLE Potential Measles Virus DP178/DP107 Analogs: CD and Antiviral Characterization

In the Example presented herein, measles (MeV) virus DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 21, above, are tested for anti-MeV activity. Additionally, circular dichroism (CD) structural analyses are conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that none of the these peptides exhibit a substantial helical character.

26.1 Materials and Methods

Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A₂₈₀ using Edlehoch's method (1967, Biochemistry 6:1948).

Anti-MeV antiviral activity syncytial reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of Vero cells acutely infected with MeV (i.e., cells which are infected with a multiplicity of infection of 2-3) to fuse and cause syncytial formation on a monolayer of an uninfected line of Vero cells. The more potent the peptide, the lower the observed level of fusion, the greater the antiviral activity of the peptide.

Uninfected confluent monolayers of Vero cells were grown in microtiter wells in 10% FBS EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 10%, antibiotics/antimycotics (Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.

To prepare acutely infected Vero cells for addition to the uninfected cells, cultures of acutely infected Vero cells were washed twice with HBSS (Bio Whittaker Cat. No. 10-543F) and cell monolayers were removed with trypsin (Bio Whittaker Cat. No. 17-161E). Once cells detached, media was added, any remaining clumps of cells were dispersed, and hemacytometer cell counts were performed.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and 50-100 acutely MeV-infected Vero cells per well. Wells were then incubated at 37° C. for a maximum of 18 hours.

On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

Anti-MeV antiviral activity plaque reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of MeV to infect permissive, uninfected Vero cells, leading to the infected cells' fusing with uninfected cells to produce syncytia. The lower the observed level of syncytial formation, the greater the antiviral activity of the peptide.

Monolayers of uninfected Vero cells are grown as described above.

The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and MeV stock virus at a final concentration of 30 plaque forming units (PFU) per well. Wells were then incubated at 37° C. for a minimum of 36 hours and a maximum of 48 hours.

On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.

Peptides: The peptides characterized in the study presented herein were peptides T-252A0 to T-256A0, T-257B1/C1, and T-258B1 to T-265B0, and T-266A0 to T-268A0, as shown in FIG. 47. These peptides represent a walk through the DP178-like region of the MeV fusion protein.

Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.

26.2 Results

The data summarized in FIGS. 47A-B represent antiviral and structural information obtained via “peptide walks” through the DP178-like region of the MeV fusion protein.

As shown in FIGS. 47A-B, the MeV DP178-like peptides exhibited a range of antiviral activity as crude peptides. Several of these peptides were chosen for purification and further antiviral characterization. The IC₅₀ values for such peptides were determined, as shown in FIG. 47B, and ranged from 1.35 μg/ml (T-257B1/C1) to 0.072 μg/ml (T-265B1). None of the DP178-like peptides showed, by CD analysis, a detectable level of helicity.

Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-MeV antiviral compounds.

27. EXAMPLE Potential SIV DP178/DP107 Analogs: Antiviral Characterization

In the Example presented herein, simian immunodeficiency virus (SIV) DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9, 12 and 19, above, were tested for anti-SIV activity. It is demonstrated that several of the identified peptides exhibit potent antiviral capability.

27.1 Materials and Methods

Anti-SIV antiviral assays: The assay utilized herein were as reported in Langolis et al. (Langolis, A. J. et al., 1991, AIDS Research and Human Retroviruses 7:713-720).

Peptides: The peptides characterized in the study presented herein were peptides T-391 to T-400, as shown in FIGS. 48A-B. These peptides represent a walk through the DP178-like region of the SIV TM protein.

Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.

27.2 Results

The data summarized in FIGS. 48A-B represent antiviral information obtained via “peptide walks” through the DPI 78-like region of the SIV TM protein.

As shown in FIG. 48 FIGS. 48A-B, peptides T-391 to T-400 were tested and exhibited a potent antiviral activity as crude peptides.

Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-SIV antiviral compounds.

28. EXAMPLE Anti-Viral Activity of DP107 and DP-178 Peptide Truncations and Mutations

The Example presented in this Section represents a study of the antiviral activity of DP107 and DP178 truncations and mutations. It is demonstrated that several of these DP107 and DP178 modified peptides exhibit substantial antiviral activity.

28.1 Materials and Methods

Anti-HIV assays: The antiviral assays performed were as those described, above, in Section 6.1. Assays utilized HIV-1/IIIb and/or HIV-2 NIHZ isolates. Purified peptides were used, unless otherwise noted in FIGS. 49A-L.

Peptides: The peptides characterized in the study presented herein were:

-   -   1) FIGS. 49A-L present peptides derived from the region around         and containing the DP178 region of the HIV-1 BRU isolate.         Specifically, this region spanned from gp41 amino acid residue         615 to amino acid residue 717. The peptides listed contain         truncations of this region and/or mutations which vary from the         DP178 amino acid sequence. Further, certain of the peptides have         had amino- and/or carboxy-terminal groups either added or         removed, as indicated in the figures; and     -   2) FIGS. 50A-B present peptides which represent truncations of         DP107 and/or the gp41 region surrounding the DP107 amino acid         sequence of HIV-1 BRU isolate. Certain of the peptides are         unblocked or biotinylated, as indicated in the figure.

Blocked peptides contained an acyl N-terminus and an amido C-terminus.

28.2 Results

Anti-HIV antiviral data was obtained with the group 1 DP178-derived peptides listed in FIGS. 49A-L. The full-length, non-mutant DP178 peptide (referred to in FIGS. 49A-L as T20) results shown are for 4 ng/ml.

In FIGS. 49A-D, a number of the DP178 truncations exhibited a high level of antiviral activity, as evidenced by their low IC₅₀ values. These include, for example, test peptides T-50, T-624, T-636 to T-641, T-645 to T-650, T-652 to T-654 and T-656. T-50 represents a test peptide which contains a point mutation (see the “G” glycine residue substitution for a “H” histidine residue in FIG. 49A). The HIV-1-derived test peptides exhibited a distinct strain-specific antiviral activity, in that none of the peptides tested on the HIV-2 NIHZ isolate demonstrated appreciable anti-HIV-2 antiviral activity.

Among the peptides listed in FIGS. 49E-H, test peptides representing the amino (T-4) and carboxy (T-3) terminal halves of DP178 were tested. The amino terminal peptide was not active (IC₅₀=3 μg/ml), whereas the carboxy terminal peptide showed potent antiviral activity (IC₅₀=3 μg/ml). A number of additional test peptides also exhibited a high level of antiviral activity. These included, for example, T-61/T-102, T-217 to T-221, T-235, T-381, T-677, T-377, T-590, T-378, T-591, T-271 to T-272, T-611, T-222 to T-223 and T-60/T-224. Certain of the antiviral peptides contain point mutations and/or amino acid residue additions which vary from the DP178 amino acid sequence.

In FIGS. 49I-L, point mutations and/or amino and/or carboxy-terminal modifications are introduced into the DP178 amino acid sequence itself. As shown in the figures, the majority of the test peptides listed exhibit potent antiviral activity.

Truncations of the DP107 peptide (referred to in FIGS. 50A-B as T21) were also produced and tested, as shown in FIGS. 50A-B. FIGS. 50A-B also present data concerning blocked and unblocked peptides which contain additional amino acid residues from the gp41 region in which the DP107 sequence resides. Most of these peptides showed antiviral activity, as evidenced by their low IC₅₀ values.

Thus, the results presented in this Section demonstrate that not only do the full length DP107 and DP178 peptides exhibit potent antiviral activity, but truncations and/or mutant versions of these peptides can also possess substantial antiviral character.

29: EXAMPLE Potential Epstein-Barr DP178/DP107 Analogs: Antiviral Characterization

In the Example presented herein, peptides derived from the Epstein-Barr (EBV) DP-178/DP107 analog region of the Zebra protein identified, above, in the Example presented in Section 20 are described and tested for anti-EBV activity. It is demonstrated that among these peptides are ones which exhibit potential anti-viral activity.

29.1 Materials and Methods

Electrophoretic Mobility Shift Assays (EMSA): Briefly, an EBV Zebra protein was synthesized utilizing SP6 RNA polymerase in vitro transcription and wheat germ in vitro translation systems (Promega Corporation recommendations; Butler, E. T. and Chamberlain, M. J., 1984, J. Biol. Chem. 257:5772; Pelham, H. R. B. and Jackson, R. J., 1976, Eur. J. Biochem. 67:247). The in vitro translated Zebra protein was then preincubated with increasing amounts of peptide up to 250 ng/ml prior to the addition of 10,000 to 20,000 c.p.m. of a ³²P-labeled Zebra response element DNA fragment. After a 20 minute incubation in the presence of the response element, the reaction was analyzed on a 4% non-denaturing polyacrylamide gel, followed by autoradiography, utilizing standard gel-shift procedures. The ability of a test peptide to prevent Zebra homodimer DNA binding was assayed by the peptide's ability to abolish the response element gel migration retardation characteristic of a protein-bound nucleic acid molecule.

Peptides: The peptides characterized in this study represent peptide walks through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as shown in FIG. 33. Specifically, the peptide walks covered the region from amino acid residue 173 to amino acid residue 246 of the EBV Zebra protein.

Each of the tested peptides were analyzed at a range of concentrations, with 150 ng/ml being the lowest concentration at which any of the peptides exerted an inhibitory effect.

29.2 Results

The EBV Zebra protein transcription factor contains a DP178/DP107 analog region, as demonstrated in the Example presented, above, in Section 20. This protein appears to be the primary factor responsible for the reactivation capability of the virus. A method by which the DNA-binding function of the Zebra virus may be abolished may, therefore, represent an effective antiviral technique. In order to identify potential anti-EBV DP178/DP107 peptides, therefore, peptides derived from the region identified in Section 20, above, were tested for their ability to inhibit Zebra protein DNA binding.

The test peptides' ability to inhibit Zebra protein DNA binding was assayed via the EMSA assays described, above, in Section 28.1. The data summarized in FIGS. 51A-C present the results of EMSA assays of the listed EBV test peptides. These peptides represent amino acid “walks” through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as in FIG. 33. As shown in FIGS. 51A-C, the region from which these peptides are derived lies between EBV Zebra protein amino acid residue 173 to 246. A number of the test peptides which were assayed exhibited an ability to inhibit Zebra protein homodimer DNA binding, including 439, 441, 444 and 445.

Those peptides which exhibit an ability to inhibit Zebra protein DNA binding represent potential anti-EBV antiviral compounds whose ability to inhibit EBV infection can be further characterized.

The present invention is not to be limited in scope by the specific embodiments described which are intended as single illustrations of individual aspects of the invention, and functionally equivalent methods and components are within the scope of the invention. Indeed, various modifications of the invention, in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims. 

1. A method for the inhibition of transmission of a hepatitis B virus to a cell, comprising contacting the virus, in the presence of the cell, with an effective concentration of a peptide having the formula: X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQSP-Z; X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGT-Z; X-LLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTT-Z; X-LVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTV-Z; X-LQAGFFLLTRILTIPQSLDSWWTSLNGLGGTTVCL-Z; X-QAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLG-Z; X-AGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQ-Z; X-GFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQN-Z; X-FFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNS-Z; X-FLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQ-Z; X-LLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS-Z; X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLEPGSSTTSTGPCRTCMTT-Z, X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGML-Z; X-GYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLP-Z X-YRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z; X-RWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z; X-WMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCP-Z; X-MCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPI-Z; X-CLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLI-Z; X-LRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIP-Z; X-RRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPG-Z; X-RFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS-Z; X-FIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSS-Z; IIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSST-Z X-IFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTT-Z: X-FLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTS-Z: X-LFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTST-Z: X-FILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTG-Z; X-ILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGP-Z: X-LLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPC-Z; X-LLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCR-Z; X-LCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRT-Z; X-CLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTC-Z; X-LIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCM-Z; or X-IFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCMT-Z; (SEQ ID NOS: 239-273, respectively) in which: amino acid residues are presented by the single-letter code; X comprises an amino group, an acetyl group, a 9-fluorenylmethoxy-carbonyl group, a hydrophobic group, or a macromolecule carrier group; Z comprises a carboxyl group, an amido group, a hydrophobic group, or a macromolecular carrier group for an effective period of time so that infection of the cell by the virus is inhibited.
 2. The method of claim 1 wherein the peptide has the formula X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQSP-Z (SEQ ID NO: 239).
 3. The method of claim 1 wherein the peptide has the formula X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGT-Z (SEQ ID NO: 240).
 4. The method of claim 1 wherein the peptide has the formula X-LLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTT-Z (SEQ ID NO: 241).
 5. The method of claim 1 wherein the peptide has the formula X-LVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTV-Z (SEQ ID NO: 242).
 6. The method of claim 1 wherein the peptide has the formula X-LQAGFFLLTRILTIPQSLDSWWTSLNGLGGTTVCL-Z (SEQ ID NO: 243).
 7. The method of claim 1 wherein the peptide has the formula X-QAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLG-Z (SEQ ID NO: 244).
 8. The method of claim 1 wherein the peptide has the formula X-AGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQ-Z (SEQ ID NO: 245).
 9. The method of claim 1 wherein the peptide has the formula X-GFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQN-Z (SEQ ID NO: 246).
 10. The method of claim 1 wherein the peptide has the formula X-FFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNS-Z (SEQ ID NO: 247).
 11. The method of claim 1 whereint he peptide has the formula X-FLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQ-Z (SEQ ID NO: 248).
 12. The method of claim 1 wherein the peptide has the formula S-LLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS-Z (SEQ ID NO: 249).
 13. The method of claim 1 wherein the peptide has the formula X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTG PCRTCMTT-Z (SEQ ID NO: 250).
 14. The method of claim 1 wherein the peptide has the formula X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGML-Z (SEQ ID NO: 251).
 15. The method of claim 1 wherein the peptide has the formula X-GYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLP-Z (SEQ ID NO: 252).
 16. The method of claim 1 wherein the peptide has the formula X-YRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPV-Z (SEQ ID NO: 253).
 17. The method of claim 1 wherein the peptide has the formula X-RWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z (SEQ ID NO: 254).
 18. The method of claim 1 wherein the peptide has the formula X-WMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCP-Z (SEQ ID NO: 255).
 19. The method of claim 1 wherein the peptide has the formula X-MCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPI-Z (SEQ ID NO: 256).
 20. The method of claim 1 wherein the peptide has the formula X-CLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLI-Z (SEQ ID NO: 257).
 21. The method of claim 1 wherein the peptide has the formula X-LRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIP-Z (SEQ ID NO: 258).
 22. The method of claim 1 wherein the peptide has the formula X-RRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPG-Z (SEQ ID NO: 259).
 23. The method of claim 1 wherein the peptide has the formula X-RFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS-Z (SEQ ID NO: 260).
 24. The method of claim 1 wherein the peptide has the formula X-FIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSS-Z (SEQ ID NO: 261).
 25. The method of claim 1 wherein the peptide has the formula X-IIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSST-Z (SEQ ID NO: 262).
 26. The method of claim 1 wherein the peptide has the formula X-IFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTT-Z (SEQ ID NO: 263).
 27. The method of claim 1 wherein the peptide has the formula X-FLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTS-Z (SEQ ID NO: 264).
 28. The method of claim 1 wherein the peptide has the formula X-LFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTST-Z (SEQ ID NO: 265).
 29. The method of claim 1 wherein the peptide has the formula X-FILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTG-Z (SEQ ID NO: 266).
 30. The method of claim 1 wherein the peptide has the formula X-ILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGP-Z (SEQ ID NO: 267).
 31. The method of claim 1 wherein the peptide has the formula X-LLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPC-Z (SEQ ID NO: 268).
 32. The method of claim 1 wherein the peptide has the formula X-LLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCR-Z (SEQ ID NO: 269).
 33. The method of claim 1 wherein the peptide has the formula X-LCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRT-Z (SEQ ID NO: 270).
 34. The method of claim 1 wherein the peptide has the formula X-CLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTC-Z (SEQ ID NO: 271).
 35. The method of claim 1 wherein the peptide has the formula X-LIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCM-Z (SEQ ID NO: 272).
 36. The method of claim 1 wherein the peptide has the formula X-IFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCMT-Z (SEQ ID NO: 273).
 37. The method of claim 1 wherein X is an acetyl group, and Z is an amido group. 